Query 048321
Match_columns 641
No_of_seqs 752 out of 4099
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 14:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-43 3.6E-48 383.3 37.9 481 86-579 64-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-42 5.3E-47 374.1 29.7 508 4-562 70-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-27 5.4E-32 242.1 37.6 372 149-565 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.2E-27 2.8E-31 236.7 37.9 352 216-579 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.3E-28 7.9E-33 252.2 19.0 186 107-292 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.9E-32 247.0 20.8 184 210-393 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.5E-24 8.4E-29 227.2 31.3 437 107-552 7-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 7.6E-24 2.6E-28 223.5 30.4 428 142-579 7-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.4E-23 8.3E-28 215.7 31.2 339 207-575 24-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 4.3E-22 1.5E-26 211.3 32.8 420 106-578 25-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 9.2E-22 3.2E-26 203.7 31.8 296 277-579 24-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.7E-20 1.6E-24 195.6 31.0 421 88-552 38-498 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.7E-19 9.1E-24 178.9 33.6 324 245-625 4-355 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.5E-19 1.9E-23 176.6 31.2 326 208-563 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 1.2E-18 4.1E-23 172.0 27.9 289 276-567 19-322 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 7.2E-16 2.5E-20 168.2 47.2 495 22-572 842-1377(1630)
17 2ooe_A Cleavage stimulation fa 99.8 9.3E-17 3.2E-21 169.5 37.4 413 140-579 12-492 (530)
18 1b89_A Protein (clathrin heavy 99.8 5.1E-19 1.7E-23 173.6 17.7 287 187-511 14-309 (449)
19 3hym_B Cell division cycle pro 99.8 8.6E-18 3E-22 165.8 26.6 265 307-578 19-298 (330)
20 1fch_A Peroxisomal targeting s 99.8 2.8E-18 9.7E-23 172.3 22.8 279 289-575 35-355 (368)
21 1b89_A Protein (clathrin heavy 99.8 3.5E-18 1.2E-22 167.7 22.1 286 87-406 15-308 (449)
22 2xm6_A Protein corresponding t 99.8 1.6E-16 5.5E-21 166.0 36.0 366 175-562 38-452 (490)
23 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.6E-19 158.4 49.6 368 23-431 989-1375(1630)
24 2ooe_A Cleavage stimulation fa 99.8 5.9E-16 2E-20 163.4 36.5 410 103-548 10-495 (530)
25 4g1t_A Interferon-induced prot 99.8 2.2E-16 7.4E-21 164.4 32.3 369 176-590 51-470 (472)
26 4eqf_A PEX5-related protein; a 99.8 7.9E-18 2.7E-22 168.9 19.0 259 309-575 64-352 (365)
27 3mkr_A Coatomer subunit epsilo 99.8 4.8E-16 1.6E-20 149.6 29.5 268 289-572 9-287 (291)
28 2xm6_A Protein corresponding t 99.8 4.2E-15 1.4E-19 155.2 38.3 351 207-580 37-433 (490)
29 1fch_A Peroxisomal targeting s 99.7 6.3E-17 2.2E-21 162.4 21.4 249 186-474 35-313 (368)
30 3cv0_A Peroxisome targeting si 99.7 5.3E-17 1.8E-21 159.9 20.4 258 312-576 23-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 1.2E-16 4E-21 153.9 21.3 246 317-579 6-264 (291)
32 4eqf_A PEX5-related protein; a 99.7 8.3E-17 2.9E-21 161.4 19.2 230 345-579 65-310 (365)
33 4g1t_A Interferon-induced prot 99.7 1.9E-15 6.6E-20 157.2 26.4 384 140-558 50-472 (472)
34 3cv0_A Peroxisome targeting si 99.7 4.7E-15 1.6E-19 145.9 24.7 265 209-510 21-312 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-17 7.7E-22 174.6 6.9 150 175-324 126-286 (1134)
36 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.5E-20 139.4 17.4 193 377-576 2-211 (217)
37 3uq3_A Heat shock protein STI1 99.7 5.8E-15 2E-19 139.7 19.8 214 351-579 11-236 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-16 4.2E-21 169.0 8.2 127 377-506 124-258 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-14 8.9E-19 136.7 20.7 242 321-573 16-269 (275)
40 3uq3_A Heat shock protein STI1 99.6 9.4E-15 3.2E-19 138.3 16.9 232 312-558 7-255 (258)
41 3u4t_A TPR repeat-containing p 99.6 4.5E-14 1.5E-18 134.9 18.0 244 282-565 6-270 (272)
42 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-13 5.8E-18 129.2 19.3 196 380-579 37-238 (252)
43 2q7f_A YRRB protein; TPR, prot 99.6 5.8E-14 2E-18 131.5 15.6 172 381-557 58-234 (243)
44 2q7f_A YRRB protein; TPR, prot 99.5 8.1E-14 2.8E-18 130.5 16.0 197 378-579 21-222 (243)
45 2vq2_A PILW, putative fimbrial 99.5 3.4E-13 1.2E-17 124.4 19.7 198 378-579 6-211 (225)
46 2h6f_A Protein farnesyltransfe 99.5 3.8E-13 1.3E-17 133.8 21.1 245 311-563 98-366 (382)
47 2h6f_A Protein farnesyltransfe 99.5 2.4E-13 8.2E-18 135.2 19.6 225 346-578 98-347 (382)
48 2ho1_A Type 4 fimbrial biogene 99.5 5.1E-13 1.7E-17 125.9 20.3 204 310-553 37-246 (252)
49 3e4b_A ALGK; tetratricopeptide 99.5 1E-12 3.6E-17 134.9 23.7 369 148-576 10-418 (452)
50 3vtx_A MAMA; tetratricopeptide 99.5 6.5E-13 2.2E-17 118.5 19.1 165 410-580 4-171 (184)
51 2vq2_A PILW, putative fimbrial 99.5 8.1E-13 2.8E-17 121.9 20.1 201 351-556 14-222 (225)
52 3u4t_A TPR repeat-containing p 99.5 3E-12 1E-16 122.1 24.3 227 244-474 3-249 (272)
53 4e6h_A MRNA 3'-END-processing 99.5 9.6E-11 3.3E-15 124.3 37.3 420 104-560 64-584 (679)
54 2pl2_A Hypothetical conserved 99.5 8.2E-13 2.8E-17 121.2 18.9 191 312-510 7-211 (217)
55 1ouv_A Conserved hypothetical 99.5 3.2E-12 1.1E-16 122.1 23.8 224 309-580 5-252 (273)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.2E-13 2.8E-17 126.2 18.2 218 355-580 15-245 (275)
57 3e4b_A ALGK; tetratricopeptide 99.5 3.9E-12 1.3E-16 130.6 24.3 340 214-581 8-389 (452)
58 4a1s_A PINS, partner of inscut 99.5 2.4E-13 8.2E-18 138.5 15.0 260 316-578 54-371 (411)
59 4abn_A Tetratricopeptide repea 99.5 2E-13 7E-18 141.1 14.5 208 361-575 84-317 (474)
60 1ouv_A Conserved hypothetical 99.5 3.8E-12 1.3E-16 121.6 21.8 230 277-548 4-254 (273)
61 3sf4_A G-protein-signaling mod 99.5 5.1E-13 1.7E-17 135.7 16.4 270 278-576 8-333 (406)
62 3ro2_A PINS homolog, G-protein 99.5 6.9E-13 2.4E-17 130.6 16.7 260 317-579 12-332 (338)
63 3sf4_A G-protein-signaling mod 99.4 7.7E-13 2.6E-17 134.3 15.4 295 242-567 7-364 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 4.8E-12 1.6E-16 112.7 16.1 166 378-549 3-174 (184)
65 2ond_A Cleavage stimulation fa 99.4 4.8E-11 1.7E-15 116.0 24.6 220 327-552 33-277 (308)
66 4gyw_A UDP-N-acetylglucosamine 99.4 4.1E-12 1.4E-16 136.5 17.9 162 410-578 8-173 (723)
67 4e6h_A MRNA 3'-END-processing 99.4 6.2E-10 2.1E-14 118.2 32.4 435 121-579 47-570 (679)
68 4a1s_A PINS, partner of inscut 99.4 5.9E-12 2E-16 128.1 16.2 266 249-548 53-375 (411)
69 4i17_A Hypothetical protein; T 99.4 1.2E-11 4.1E-16 114.5 16.2 187 380-579 7-209 (228)
70 3as5_A MAMA; tetratricopeptide 99.4 1.5E-11 5.2E-16 109.3 16.3 159 415-578 12-172 (186)
71 2ond_A Cleavage stimulation fa 99.4 3.3E-11 1.1E-15 117.1 19.9 212 362-580 33-271 (308)
72 4abn_A Tetratricopeptide repea 99.3 1.3E-11 4.3E-16 127.6 16.8 177 396-579 84-287 (474)
73 3ro2_A PINS homolog, G-protein 99.3 1.2E-11 4.2E-16 121.6 15.8 266 249-548 10-335 (338)
74 3ulq_A Response regulator aspa 99.3 1.3E-11 4.5E-16 124.2 15.6 223 355-578 113-367 (383)
75 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-12 4.2E-17 127.4 7.6 237 311-578 28-306 (311)
76 3nf1_A KLC 1, kinesin light ch 99.3 4.6E-12 1.6E-16 123.3 10.7 241 277-548 25-310 (311)
77 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.8E-15 102.9 19.4 168 380-552 8-180 (186)
78 3ulq_A Response regulator aspa 99.3 4.6E-11 1.6E-15 120.2 17.6 232 316-547 109-370 (383)
79 4i17_A Hypothetical protein; T 99.3 8.5E-11 2.9E-15 108.7 17.3 205 343-561 5-225 (228)
80 1hz4_A MALT regulatory protein 99.3 1.8E-09 6.3E-14 108.0 26.3 257 320-578 24-321 (373)
81 3q15_A PSP28, response regulat 99.2 8.9E-11 3E-15 117.8 15.9 221 355-578 111-364 (378)
82 3qky_A Outer membrane assembly 99.2 8.6E-10 3E-14 104.2 17.5 203 379-625 14-247 (261)
83 3q15_A PSP28, response regulat 99.2 6.3E-09 2.1E-13 104.3 23.9 228 316-545 107-365 (378)
84 3edt_B KLC 2, kinesin light ch 99.1 2E-10 7E-15 109.7 11.8 198 380-578 43-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.1 3E-10 1E-14 122.1 14.0 164 378-547 7-176 (723)
86 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.7E-15 99.7 6.5 140 420-565 6-149 (150)
87 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.6E-09 1.6E-13 96.6 17.9 179 382-582 6-216 (225)
88 3mv2_B Coatomer subunit epsilo 99.1 9.6E-09 3.3E-13 96.7 19.7 174 399-579 85-282 (310)
89 1qqe_A Vesicular transport pro 99.1 1.5E-09 5.3E-14 104.3 14.7 228 328-577 3-267 (292)
90 2fo7_A Synthetic consensus TPR 99.1 1.9E-09 6.6E-14 89.7 13.3 129 413-578 3-131 (136)
91 4ga2_A E3 SUMO-protein ligase 99.1 2.9E-10 9.9E-15 97.1 8.1 121 453-578 4-128 (150)
92 1hz4_A MALT regulatory protein 99.1 3.8E-08 1.3E-12 98.4 24.9 192 282-473 96-320 (373)
93 3qky_A Outer membrane assembly 99.1 2E-09 7E-14 101.6 14.5 204 343-570 13-252 (261)
94 1qqe_A Vesicular transport pro 99.1 2.4E-09 8.3E-14 102.9 15.2 217 294-549 32-273 (292)
95 2fo7_A Synthetic consensus TPR 99.0 6.6E-09 2.2E-13 86.4 15.7 124 382-510 3-129 (136)
96 2pzi_A Probable serine/threoni 99.0 8.1E-10 2.8E-14 119.4 12.5 147 411-564 433-582 (681)
97 3qou_A Protein YBBN; thioredox 99.0 3.8E-09 1.3E-13 101.2 15.1 173 398-577 104-282 (287)
98 3mv2_B Coatomer subunit epsilo 99.0 2.4E-08 8.2E-13 94.0 18.8 238 291-552 25-289 (310)
99 3gyz_A Chaperone protein IPGC; 99.0 1.2E-09 4.2E-14 92.7 8.8 100 480-579 31-133 (151)
100 4gco_A Protein STI-1; structur 99.0 2.9E-09 1E-13 87.5 10.6 99 480-578 8-109 (126)
101 3edt_B KLC 2, kinesin light ch 99.0 7.9E-09 2.7E-13 98.5 15.3 165 381-545 86-281 (283)
102 2r5s_A Uncharacterized protein 99.0 4.2E-09 1.4E-13 92.7 12.1 76 502-577 92-171 (176)
103 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.6E-11 90.6 29.9 371 119-544 7-412 (493)
104 3urz_A Uncharacterized protein 98.9 1.5E-08 5.1E-13 91.9 14.3 127 415-548 58-189 (208)
105 2vgx_A Chaperone SYCD; alterna 98.9 3.4E-09 1.2E-13 90.0 9.1 97 483-579 20-118 (148)
106 2pzi_A Probable serine/threoni 98.9 1.9E-08 6.7E-13 108.6 17.3 190 356-553 402-610 (681)
107 2vsy_A XCC0866; transferase, g 98.9 8.1E-09 2.8E-13 109.6 14.1 159 393-557 2-169 (568)
108 4gco_A Protein STI-1; structur 98.9 6.7E-09 2.3E-13 85.4 10.5 115 442-560 8-125 (126)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 3E-08 1E-12 96.0 16.3 220 323-572 4-254 (307)
110 3rjv_A Putative SEL1 repeat pr 98.9 6E-08 2E-12 88.1 17.0 161 409-580 16-198 (212)
111 2vsy_A XCC0866; transferase, g 98.9 2.8E-08 9.5E-13 105.5 16.5 147 358-511 2-155 (568)
112 3urz_A Uncharacterized protein 98.9 2E-08 6.9E-13 91.0 13.0 157 416-579 9-186 (208)
113 3dra_A Protein farnesyltransfe 98.9 2.6E-07 9E-12 87.9 20.7 192 381-578 68-286 (306)
114 2yhc_A BAMD, UPF0169 lipoprote 98.8 9E-08 3.1E-12 87.9 16.7 186 345-553 4-221 (225)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.6E-08 5.6E-13 97.9 11.3 199 357-577 3-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1E-07 3.5E-12 86.6 14.7 128 413-548 8-153 (213)
117 2xcb_A PCRH, regulatory protei 98.8 4.7E-08 1.6E-12 82.3 11.5 96 484-579 18-115 (142)
118 2r5s_A Uncharacterized protein 98.8 6.9E-08 2.4E-12 84.8 13.0 156 382-544 8-172 (176)
119 3upv_A Heat shock protein STI1 98.8 3.3E-08 1.1E-12 81.3 10.3 119 484-622 4-124 (126)
120 3u3w_A Transcriptional activat 98.8 5.3E-07 1.8E-11 86.5 20.2 161 416-578 80-265 (293)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 2.2E-07 7.4E-12 89.3 16.9 165 413-577 77-264 (293)
122 1a17_A Serine/threonine protei 98.7 9.1E-08 3.1E-12 82.8 12.6 127 448-578 15-145 (166)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.5E-07 8.5E-12 84.0 15.9 132 382-516 8-154 (213)
124 2e2e_A Formate-dependent nitri 98.7 2.7E-08 9.4E-13 87.5 9.0 118 458-579 22-144 (177)
125 3qou_A Protein YBBN; thioredox 98.7 3.8E-07 1.3E-11 87.1 17.5 159 346-509 118-280 (287)
126 1na0_A Designed protein CTPR3; 98.7 1.2E-07 4.2E-12 77.3 12.2 114 447-564 10-125 (125)
127 2lni_A Stress-induced-phosphop 98.7 9.8E-08 3.3E-12 79.0 11.6 114 448-565 18-133 (133)
128 2vyi_A SGTA protein; chaperone 98.7 1E-07 3.4E-12 78.6 11.6 116 448-567 14-131 (131)
129 3dra_A Protein farnesyltransfe 98.7 3.3E-06 1.1E-10 80.4 23.2 228 323-558 46-301 (306)
130 2uy1_A Cleavage stimulation fa 98.7 9.4E-06 3.2E-10 83.5 27.8 355 70-438 11-411 (493)
131 2c2l_A CHIP, carboxy terminus 98.7 3.6E-08 1.2E-12 93.9 9.0 192 379-579 3-199 (281)
132 1p5q_A FKBP52, FK506-binding p 98.7 9E-08 3.1E-12 93.8 11.2 142 411-576 147-291 (336)
133 3sz7_A HSC70 cochaperone (SGT) 98.7 1.5E-07 5.1E-12 81.5 11.3 95 484-578 11-107 (164)
134 2vgx_A Chaperone SYCD; alterna 98.6 6E-08 2.1E-12 82.2 8.0 108 443-554 17-127 (148)
135 1hxi_A PEX5, peroxisome target 98.6 8.3E-08 2.8E-12 78.1 7.9 95 486-580 19-115 (121)
136 1elw_A TPR1-domain of HOP; HOP 98.6 4.2E-07 1.4E-11 73.2 11.8 95 484-578 4-100 (118)
137 2e2e_A Formate-dependent nitri 98.6 4.2E-07 1.5E-11 79.7 12.5 126 422-553 21-152 (177)
138 3rjv_A Putative SEL1 repeat pr 98.6 1.4E-06 4.9E-11 78.9 16.2 172 364-547 5-199 (212)
139 3gyz_A Chaperone protein IPGC; 98.6 3.1E-07 1.1E-11 77.7 10.6 103 443-549 32-137 (151)
140 2kck_A TPR repeat; tetratricop 98.6 2.4E-07 8.1E-12 73.9 9.4 98 483-580 5-107 (112)
141 4f3v_A ESX-1 secretion system 98.6 1.5E-07 5.2E-12 87.4 9.1 181 392-579 18-237 (282)
142 3q49_B STIP1 homology and U bo 98.6 3.3E-07 1.1E-11 76.4 10.5 98 482-579 7-106 (137)
143 2lni_A Stress-induced-phosphop 98.6 3.7E-07 1.3E-11 75.5 10.5 99 481-579 13-113 (133)
144 2fbn_A 70 kDa peptidylprolyl i 98.6 3.8E-08 1.3E-12 88.4 4.6 169 387-578 11-185 (198)
145 1na0_A Designed protein CTPR3; 98.6 5.7E-07 1.9E-11 73.2 11.4 96 484-579 9-106 (125)
146 3u3w_A Transcriptional activat 98.6 6.7E-06 2.3E-10 78.7 20.6 160 386-545 81-266 (293)
147 2xcb_A PCRH, regulatory protei 98.5 3.3E-07 1.1E-11 77.1 9.9 107 448-558 20-128 (142)
148 4f3v_A ESX-1 secretion system 98.5 5.8E-07 2E-11 83.5 12.2 137 415-558 106-249 (282)
149 2hr2_A Hypothetical protein; a 98.5 8.6E-08 2.9E-12 80.2 5.9 61 518-578 59-130 (159)
150 3gw4_A Uncharacterized protein 98.5 8.3E-07 2.9E-11 79.7 13.0 131 448-578 28-175 (203)
151 4gcn_A Protein STI-1; structur 98.5 3E-07 1E-11 75.6 8.9 94 485-578 9-111 (127)
152 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-06 3.7E-11 70.7 12.1 109 448-560 6-116 (118)
153 2vyi_A SGTA protein; chaperone 98.5 6.7E-07 2.3E-11 73.5 11.0 97 483-579 11-109 (131)
154 3rkv_A Putative peptidylprolyl 98.5 4E-07 1.4E-11 78.5 9.8 85 516-626 63-148 (162)
155 2qfc_A PLCR protein; TPR, HTH, 98.5 2.6E-06 8.9E-11 81.6 16.3 163 381-545 76-266 (293)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 1.4E-07 4.7E-12 84.7 6.6 96 484-579 38-151 (198)
157 1wao_1 Serine/threonine protei 98.5 4.3E-07 1.5E-11 93.4 10.7 118 454-575 14-135 (477)
158 2dba_A Smooth muscle cell asso 98.5 1.2E-06 4E-11 74.0 11.5 96 483-578 27-127 (148)
159 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.4E-11 75.5 11.9 107 448-558 13-121 (164)
160 3q7a_A Farnesyltransferase alp 98.5 9.5E-06 3.3E-10 78.0 18.8 192 382-579 90-331 (349)
161 3upv_A Heat shock protein STI1 98.5 9.5E-07 3.3E-11 72.4 10.3 109 448-560 6-122 (126)
162 2dba_A Smooth muscle cell asso 98.4 2.1E-06 7.1E-11 72.4 12.2 110 448-562 30-145 (148)
163 3gw4_A Uncharacterized protein 98.4 3.2E-06 1.1E-10 75.8 13.4 153 392-546 4-177 (203)
164 1a17_A Serine/threonine protei 98.4 5.3E-06 1.8E-10 71.4 14.3 128 412-544 14-145 (166)
165 1wao_1 Serine/threonine protei 98.4 5.6E-07 1.9E-11 92.6 9.1 124 420-549 15-154 (477)
166 3q49_B STIP1 homology and U bo 98.4 2E-06 6.8E-11 71.5 10.2 100 445-548 8-109 (137)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.8E-06 9.6E-11 86.9 13.3 144 411-578 268-414 (457)
168 2xev_A YBGF; tetratricopeptide 98.4 2E-06 6.7E-11 70.7 10.0 91 489-579 7-105 (129)
169 1elr_A TPR2A-domain of HOP; HO 98.4 1.7E-06 5.9E-11 71.0 9.7 96 484-579 4-108 (131)
170 3dss_A Geranylgeranyl transfer 98.3 4.8E-05 1.6E-09 72.8 20.0 178 396-578 90-303 (331)
171 3q7a_A Farnesyltransferase alp 98.3 0.00023 7.8E-09 68.4 24.6 232 319-558 63-345 (349)
172 2kck_A TPR repeat; tetratricop 98.3 3.8E-06 1.3E-10 66.6 10.5 99 448-550 8-111 (112)
173 1hxi_A PEX5, peroxisome target 98.3 3.7E-06 1.3E-10 68.2 9.9 99 448-550 19-119 (121)
174 3k9i_A BH0479 protein; putativ 98.3 3.7E-07 1.3E-11 73.7 3.5 82 497-578 3-89 (117)
175 1p5q_A FKBP52, FK506-binding p 98.3 8.2E-06 2.8E-10 79.7 13.7 119 379-503 146-283 (336)
176 3dss_A Geranylgeranyl transfer 98.3 9.7E-05 3.3E-09 70.6 20.5 192 361-559 90-318 (331)
177 2c2l_A CHIP, carboxy terminus 98.3 3.8E-06 1.3E-10 79.8 10.8 113 445-561 3-117 (281)
178 2if4_A ATFKBP42; FKBP-like, al 98.3 2.2E-06 7.4E-11 83.9 9.2 147 412-580 180-329 (338)
179 1ihg_A Cyclophilin 40; ppiase 98.2 3.7E-06 1.3E-10 83.2 10.0 138 412-572 224-363 (370)
180 1dce_A Protein (RAB geranylger 98.2 3E-05 1E-09 81.1 17.3 168 395-568 44-244 (567)
181 4gcn_A Protein STI-1; structur 98.2 4.6E-06 1.6E-10 68.3 8.9 105 412-548 9-115 (127)
182 2l6j_A TPR repeat-containing p 98.2 4.8E-07 1.6E-11 72.1 2.7 94 482-575 2-103 (111)
183 1elr_A TPR2A-domain of HOP; HO 98.2 4.2E-06 1.4E-10 68.6 8.6 46 516-562 79-124 (131)
184 2hr2_A Hypothetical protein; a 98.2 3.2E-06 1.1E-10 70.7 7.3 71 486-556 59-142 (159)
185 3rkv_A Putative peptidylprolyl 98.2 3.8E-06 1.3E-10 72.2 8.1 78 484-561 63-143 (162)
186 2xev_A YBGF; tetratricopeptide 98.2 1.8E-05 6E-10 64.8 11.8 102 453-556 9-116 (129)
187 4b4t_Q 26S proteasome regulato 98.2 1.1E-05 3.6E-10 82.2 12.4 166 413-578 57-244 (434)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-05 3.5E-10 82.8 11.9 64 516-579 317-380 (457)
189 3ro3_A PINS homolog, G-protein 98.1 3.5E-06 1.2E-10 72.1 7.0 128 449-578 12-157 (164)
190 1ihg_A Cyclophilin 40; ppiase 98.1 1E-05 3.5E-10 80.0 10.5 65 515-579 272-336 (370)
191 3k9i_A BH0479 protein; putativ 98.1 1.9E-06 6.6E-11 69.4 4.4 92 459-552 3-97 (117)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 1E-05 3.5E-10 79.1 10.0 150 380-550 179-333 (338)
193 3ma5_A Tetratricopeptide repea 98.1 1.3E-05 4.3E-10 62.4 8.0 65 514-578 5-69 (100)
194 3n71_A Histone lysine methyltr 98.1 9.5E-06 3.3E-10 82.8 9.3 125 456-580 319-465 (490)
195 1na3_A Designed protein CTPR2; 98.0 1.3E-05 4.4E-10 60.8 7.6 81 484-564 9-91 (91)
196 3ro3_A PINS homolog, G-protein 98.0 2.5E-05 8.5E-10 66.6 9.4 133 413-547 11-160 (164)
197 2kat_A Uncharacterized protein 98.0 9.4E-06 3.2E-10 65.0 6.1 78 502-579 3-82 (115)
198 4b4t_Q 26S proteasome regulato 98.0 6.9E-05 2.4E-09 76.1 13.7 159 418-578 11-203 (434)
199 1zu2_A Mitochondrial import re 97.9 4.4E-06 1.5E-10 69.7 2.9 85 496-580 14-121 (158)
200 3bee_A Putative YFRE protein; 97.8 6E-05 2.1E-09 57.2 7.6 68 513-580 3-73 (93)
201 1dce_A Protein (RAB geranylger 97.8 0.00029 9.8E-09 73.7 14.4 148 425-578 43-220 (567)
202 2l6j_A TPR repeat-containing p 97.7 0.00031 1.1E-08 55.3 10.9 65 515-579 3-67 (111)
203 1zu2_A Mitochondrial import re 97.7 2.9E-05 1E-09 64.7 4.6 87 460-550 16-125 (158)
204 1na3_A Designed protein CTPR2; 97.7 0.00017 5.9E-09 54.3 8.4 65 515-579 8-72 (91)
205 1klx_A Cysteine rich protein B 97.6 0.00043 1.5E-08 57.3 11.0 89 490-580 31-127 (138)
206 2kat_A Uncharacterized protein 97.6 7.3E-05 2.5E-09 59.7 5.8 81 464-548 3-85 (115)
207 3n71_A Histone lysine methyltr 97.6 0.00025 8.7E-09 72.3 10.9 124 420-544 318-463 (490)
208 3qwp_A SET and MYND domain-con 97.6 6E-05 2.1E-09 75.7 6.0 89 518-624 331-427 (429)
209 1pc2_A Mitochondria fission pr 97.4 0.00035 1.2E-08 57.5 7.2 63 515-577 31-98 (152)
210 3qww_A SET and MYND domain-con 97.4 7E-05 2.4E-09 75.0 3.6 82 518-617 342-431 (433)
211 2kc7_A BFR218_protein; tetratr 97.3 0.00051 1.7E-08 52.8 7.0 63 491-553 7-72 (99)
212 3ly7_A Transcriptional activat 97.3 0.0047 1.6E-07 59.2 14.6 63 515-578 276-338 (372)
213 1klx_A Cysteine rich protein B 97.3 0.0011 3.8E-08 54.7 9.2 113 424-547 8-128 (138)
214 3qww_A SET and MYND domain-con 97.2 0.001 3.6E-08 66.5 10.0 93 459-551 311-422 (433)
215 2kc7_A BFR218_protein; tetratr 97.2 0.00098 3.4E-08 51.1 7.8 87 452-550 6-95 (99)
216 3qwp_A SET and MYND domain-con 97.1 0.0022 7.6E-08 64.3 10.9 96 457-552 298-412 (429)
217 3ly7_A Transcriptional activat 97.1 0.0047 1.6E-07 59.2 12.0 154 396-555 180-348 (372)
218 1wy6_A Hypothetical protein ST 97.1 0.061 2.1E-06 42.4 15.7 140 422-582 18-157 (172)
219 3ma5_A Tetratricopeptide repea 97.1 0.0027 9.1E-08 48.9 8.6 63 410-474 6-69 (100)
220 3lvg_A Clathrin heavy chain 1; 97.0 2E-05 7E-10 76.6 -4.8 438 21-538 56-534 (624)
221 3u64_A Protein TP_0956; tetrat 96.8 0.0035 1.2E-07 57.5 7.9 87 500-586 179-276 (301)
222 3lvg_A Clathrin heavy chain 1; 96.7 0.00057 2E-08 66.8 2.3 237 175-431 53-324 (624)
223 3bee_A Putative YFRE protein; 96.5 0.023 7.9E-07 42.7 9.7 76 481-557 3-83 (93)
224 1nzn_A CGI-135 protein, fissio 96.4 0.0084 2.9E-07 47.3 7.1 68 482-549 33-107 (126)
225 1pc2_A Mitochondria fission pr 96.3 0.012 4.1E-07 48.4 7.6 85 462-550 14-105 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.2 0.014 4.9E-07 45.0 7.3 73 484-556 5-86 (104)
227 3mkq_A Coatomer beta'-subunit; 96.2 0.041 1.4E-06 60.6 13.7 98 391-511 610-708 (814)
228 1y8m_A FIS1; mitochondria, unk 96.1 0.08 2.7E-06 42.5 11.0 65 514-578 37-105 (144)
229 3mkq_B Coatomer subunit alpha; 96.1 0.43 1.5E-05 40.3 16.0 129 388-542 13-141 (177)
230 4gns_B Protein CSD3, chitin bi 96.1 0.02 6.8E-07 60.9 9.7 123 450-577 252-398 (754)
231 3mkq_A Coatomer beta'-subunit; 95.8 0.17 5.9E-06 55.6 16.4 154 114-304 607-761 (814)
232 3u64_A Protein TP_0956; tetrat 95.3 0.022 7.5E-07 52.3 5.7 63 486-548 201-272 (301)
233 3mkq_B Coatomer subunit alpha; 95.3 0.57 1.9E-05 39.5 13.9 127 289-437 15-141 (177)
234 3o48_A Mitochondria fission 1 95.2 0.069 2.3E-06 42.3 7.4 63 516-578 40-106 (134)
235 4ady_A RPN2, 26S proteasome re 95.2 4.6 0.00016 44.0 28.2 255 254-519 384-664 (963)
236 1nzn_A CGI-135 protein, fissio 94.9 0.21 7.3E-06 39.4 9.5 86 425-515 15-106 (126)
237 2v5f_A Prolyl 4-hydroxylase su 94.8 0.15 5E-06 39.2 8.5 64 515-578 4-74 (104)
238 1qsa_A Protein (soluble lytic 94.7 4.9 0.00017 41.9 25.2 114 425-544 228-347 (618)
239 2wpv_A GET4, UPF0363 protein Y 93.4 5.1 0.00018 37.4 19.0 169 281-475 35-217 (312)
240 4h7y_A Dual specificity protei 92.9 0.19 6.5E-06 40.7 5.8 100 445-548 12-126 (161)
241 1wy6_A Hypothetical protein ST 92.0 3.9 0.00013 32.5 12.6 84 292-377 74-157 (172)
242 4h7y_A Dual specificity protei 91.9 1.8 6.2E-05 35.1 10.2 100 103-204 10-122 (161)
243 2wpv_A GET4, UPF0363 protein Y 91.0 10 0.00035 35.4 16.2 131 178-321 35-176 (312)
244 4b4t_P 26S proteasome regulato 90.4 11 0.00037 37.6 17.0 258 119-410 29-325 (445)
245 1v54_E Cytochrome C oxidase po 90.0 1.6 5.6E-05 32.4 7.6 63 426-492 25-87 (109)
246 3lpz_A GET4 (YOR164C homolog); 89.8 13 0.00046 34.9 21.4 168 281-474 37-215 (336)
247 3ffl_A Anaphase-promoting comp 88.3 4.1 0.00014 33.7 9.8 27 485-511 123-149 (167)
248 4fhn_B Nucleoporin NUP120; pro 87.6 6.1 0.00021 45.0 14.4 81 449-531 902-986 (1139)
249 2qx5_A Nucleoporin NIC96; mRNA 87.3 11 0.00038 39.4 14.9 83 316-409 300-385 (661)
250 3ffl_A Anaphase-promoting comp 87.2 1.1 3.7E-05 37.2 5.8 125 440-578 12-150 (167)
251 4ady_A RPN2, 26S proteasome re 86.9 39 0.0013 36.9 32.9 249 287-544 382-657 (963)
252 3o48_A Mitochondria fission 1 86.8 2.4 8.1E-05 33.6 7.2 71 481-551 37-113 (134)
253 2uwj_G Type III export protein 86.5 8 0.00028 28.6 9.5 87 360-451 21-107 (115)
254 3lpz_A GET4 (YOR164C homolog); 86.5 22 0.00075 33.5 18.1 131 179-322 38-179 (336)
255 2p58_C Putative type III secre 86.1 8.5 0.00029 28.5 9.7 87 360-451 22-108 (116)
256 1y8m_A FIS1; mitochondria, unk 85.7 4.5 0.00015 32.5 8.4 70 481-550 36-111 (144)
257 2y69_E Cytochrome C oxidase su 85.4 3.9 0.00013 32.2 7.6 63 426-492 68-130 (152)
258 2ff4_A Probable regulatory pro 85.2 1.5 5.1E-05 43.0 6.9 60 519-578 174-233 (388)
259 4gns_B Protein CSD3, chitin bi 85.0 8.3 0.00028 41.1 12.7 53 455-511 346-398 (754)
260 2uwj_G Type III export protein 84.9 9.7 0.00033 28.1 9.0 86 259-349 21-106 (115)
261 2p58_C Putative type III secre 84.5 10 0.00036 28.0 9.2 86 259-349 22-107 (116)
262 4b4t_P 26S proteasome regulato 84.4 34 0.0012 34.0 19.9 99 413-511 139-245 (445)
263 1zbp_A Hypothetical protein VP 83.5 10 0.00035 34.3 10.7 123 420-551 6-135 (273)
264 3txn_A 26S proteasome regulato 83.1 35 0.0012 33.1 15.9 163 346-509 20-206 (394)
265 3txn_A 26S proteasome regulato 82.6 19 0.00065 35.0 13.2 28 381-408 20-47 (394)
266 2ff4_A Probable regulatory pro 80.6 12 0.0004 36.5 11.2 73 414-489 174-250 (388)
267 1v54_E Cytochrome C oxidase po 80.4 13 0.00045 27.7 8.3 63 121-184 25-87 (109)
268 1zbp_A Hypothetical protein VP 79.3 4.5 0.00015 36.6 6.8 112 454-579 5-129 (273)
269 3esl_A Checkpoint serine/threo 78.1 14 0.00048 31.7 9.3 80 501-581 61-146 (202)
270 4fhn_B Nucleoporin NUP120; pro 77.7 13 0.00045 42.3 11.9 62 519-580 902-968 (1139)
271 1wdy_A 2-5A-dependent ribonucl 72.8 54 0.0018 29.5 13.6 28 23-54 6-33 (285)
272 1qsa_A Protein (soluble lytic 69.1 1.1E+02 0.0039 31.7 35.0 325 86-436 83-438 (618)
273 2qx5_A Nucleoporin NIC96; mRNA 68.7 81 0.0028 33.0 14.2 46 107-154 154-199 (661)
274 2y69_E Cytochrome C oxidase su 67.9 35 0.0012 27.0 8.3 61 123-184 70-130 (152)
275 4b4t_R RPN7, 26S proteasome re 67.0 41 0.0014 33.2 11.4 97 381-477 132-239 (429)
276 4a1g_A Mitotic checkpoint seri 66.2 29 0.00098 28.3 8.1 78 501-581 52-132 (152)
277 4b4t_R RPN7, 26S proteasome re 65.3 8.4 0.00029 38.2 5.9 62 448-510 133-194 (429)
278 1k1a_A B-cell lymphoma 3-encod 62.8 53 0.0018 28.7 10.5 87 113-203 13-103 (241)
279 1wdy_A 2-5A-dependent ribonucl 62.6 45 0.0016 30.0 10.3 16 289-304 155-170 (285)
280 2wvi_A Mitotic checkpoint seri 60.5 42 0.0014 27.7 8.2 75 501-581 47-127 (164)
281 3ltj_A Alpharep-4; protein eng 60.3 78 0.0027 26.8 17.9 48 277-324 26-73 (201)
282 3ltm_A Alpha-REP4; protein eng 58.4 87 0.003 26.7 17.6 60 378-438 124-183 (211)
283 3ltj_A Alpharep-4; protein eng 55.5 94 0.0032 26.2 16.6 16 278-293 120-135 (201)
284 3ltm_A Alpha-REP4; protein eng 52.9 1.1E+02 0.0037 26.1 16.7 17 278-294 125-141 (211)
285 3b7b_A Euchromatic histone-lys 52.7 43 0.0015 29.3 8.0 22 352-373 214-235 (237)
286 4g8k_A 2-5A-dependent ribonucl 51.2 1.5E+02 0.0053 27.4 15.1 49 23-76 26-78 (337)
287 1n11_A Ankyrin; clathrin, BAND 51.2 1.2E+02 0.004 29.7 11.7 141 89-243 25-173 (437)
288 1oyz_A Hypothetical protein YI 49.8 1.5E+02 0.005 26.7 19.0 244 197-458 27-279 (280)
289 3eiq_C Programmed cell death p 49.3 84 0.0029 29.9 9.5 63 383-445 220-287 (358)
290 3eiq_C Programmed cell death p 45.5 96 0.0033 29.5 9.2 26 108-133 56-81 (358)
291 3jxi_A Vanilloid receptor-rela 45.4 32 0.0011 30.8 6.0 89 113-201 9-115 (260)
292 4b4t_S RPN3, 26S proteasome re 44.6 70 0.0024 32.2 8.3 63 447-511 232-297 (523)
293 3hra_A Ankyrin repeat family p 44.4 71 0.0024 26.9 7.9 148 88-243 15-172 (201)
294 3bqo_A Telomeric repeat-bindin 42.7 1.3E+02 0.0046 25.5 8.3 61 500-560 94-161 (211)
295 3hra_A Ankyrin repeat family p 40.6 96 0.0033 26.0 8.1 153 116-278 12-172 (201)
296 3esl_A Checkpoint serine/threo 40.0 1.8E+02 0.0061 24.9 10.4 61 413-474 82-143 (202)
297 3ljn_A Hypothetical protein; a 40.0 2.2E+02 0.0074 26.8 11.3 28 113-140 88-115 (364)
298 2zu6_B Programmed cell death p 40.0 1.6E+02 0.0056 27.2 9.7 26 179-204 6-31 (307)
299 2d2s_A Exocyst complex compone 39.9 86 0.0029 27.8 7.5 88 417-510 24-117 (235)
300 3jxi_A Vanilloid receptor-rela 39.7 67 0.0023 28.6 7.2 53 26-78 9-70 (260)
301 1k1a_A B-cell lymphoma 3-encod 38.6 1.9E+02 0.0065 24.9 12.7 31 25-55 12-42 (241)
302 3kea_A K1L; tropism, ANK repea 38.5 1.6E+02 0.0053 26.7 9.6 18 184-201 100-117 (285)
303 3ygs_P Procaspase 9; apoptosis 38.4 32 0.0011 25.5 3.8 39 89-127 51-89 (97)
304 2d2s_A Exocyst complex compone 38.1 1.1E+02 0.0039 27.0 8.0 23 112-134 24-46 (235)
305 3kea_A K1L; tropism, ANK repea 38.0 1.3E+02 0.0045 27.2 9.0 19 527-545 169-187 (285)
306 2nsz_A Programmed cell death p 37.3 93 0.0032 24.4 6.6 62 383-444 10-76 (129)
307 2p1h_A APAF-1, apoptotic prote 34.4 77 0.0026 23.1 5.4 38 88-125 49-86 (94)
308 2nsz_A Programmed cell death p 31.9 87 0.003 24.6 5.6 25 283-307 11-35 (129)
309 2rfa_A Transient receptor pote 31.9 2.1E+02 0.0072 24.5 9.1 21 321-341 162-182 (232)
310 3aji_A 26S proteasome non-ATPa 31.5 1.8E+02 0.0063 24.8 8.6 19 113-131 10-28 (231)
311 3eyy_A Putative iron uptake re 30.8 63 0.0021 26.0 4.7 65 2-68 2-66 (145)
312 2ion_A PDCD4, programmed cell 30.0 81 0.0028 25.6 5.2 61 383-443 12-77 (152)
313 4b4t_S RPN3, 26S proteasome re 30.0 75 0.0026 32.0 5.9 67 484-550 231-304 (523)
314 2pm7_A Protein WEB1, protein t 29.8 3.7E+02 0.013 26.0 10.7 26 552-577 338-363 (399)
315 3eu9_A Huntingtin-interacting 29.5 2.7E+02 0.0091 23.8 10.1 18 184-201 114-131 (240)
316 1bpo_A Protein (clathrin); cla 28.4 4.4E+02 0.015 26.0 10.8 138 359-511 343-483 (494)
317 2ko4_A Mediator of RNA polymer 28.3 1.2E+02 0.0042 21.1 4.9 40 196-235 23-62 (81)
318 1n11_A Ankyrin; clathrin, BAND 28.0 4.1E+02 0.014 25.5 12.6 119 113-244 84-207 (437)
319 1oai_A Nuclear RNA export fact 27.0 43 0.0015 22.0 2.5 24 119-142 33-57 (59)
320 2r9g_A AAA ATPase, central reg 27.0 3E+02 0.01 23.5 9.0 61 315-376 16-84 (204)
321 2ion_A PDCD4, programmed cell 26.9 1.1E+02 0.0039 24.7 5.6 24 283-306 13-36 (152)
322 1bd8_A P19INK4D CDK4/6 inhibit 26.9 1E+02 0.0036 24.4 5.7 15 290-304 109-123 (156)
323 2fe3_A Peroxide operon regulat 26.8 65 0.0022 25.9 4.2 64 5-69 8-71 (145)
324 2wvi_A Mitotic checkpoint seri 26.6 2.7E+02 0.0092 22.9 8.5 46 429-474 78-124 (164)
325 4a1g_A Mitotic checkpoint seri 26.5 2.6E+02 0.0088 22.7 8.4 53 123-175 82-135 (152)
326 3eu9_A Huntingtin-interacting 26.5 2.9E+02 0.01 23.5 9.1 54 523-577 181-234 (240)
327 2zu6_B Programmed cell death p 26.3 1.8E+02 0.0062 26.9 7.6 69 212-281 169-239 (307)
328 3i5p_A Nucleoporin NUP170; hel 25.4 3.1E+02 0.011 27.6 9.6 69 512-580 174-247 (525)
329 2rfa_A Transient receptor pote 25.0 3.2E+02 0.011 23.2 9.3 46 230-275 135-182 (232)
330 2xig_A Ferric uptake regulatio 24.9 1.9E+02 0.0067 23.2 6.8 45 417-461 32-76 (150)
331 3ljn_A Hypothetical protein; a 24.7 1.4E+02 0.0047 28.2 6.9 16 390-405 180-195 (364)
332 4aez_C MAD3, mitotic spindle c 24.4 3.2E+02 0.011 23.8 8.2 47 428-474 131-178 (223)
333 2fe3_A Peroxide operon regulat 24.3 1.5E+02 0.0051 23.7 5.9 60 132-192 13-72 (145)
334 2b7e_A PRE-mRNA processing pro 24.1 72 0.0025 21.0 3.0 35 35-69 2-37 (59)
335 4gq2_M Nucleoporin NUP120; bet 24.1 6.8E+02 0.023 27.6 12.9 113 444-564 808-950 (950)
336 1ug3_A EIF4GI, eukaryotic prot 23.9 4E+02 0.014 25.0 9.7 61 282-342 14-78 (339)
337 2yru_A Steroid receptor RNA ac 23.8 49 0.0017 25.5 2.7 72 21-92 21-99 (118)
338 3re2_A Predicted protein; meni 22.9 3E+02 0.01 26.0 7.9 52 549-621 295-347 (472)
339 3u84_A Menin; MLL, JUND, ledgf 22.9 2.8E+02 0.0097 26.7 7.9 52 549-621 317-369 (550)
340 3qye_A TBC1 domain family memb 22.8 4.6E+02 0.016 24.3 11.7 75 230-304 209-287 (331)
341 3ygs_P Procaspase 9; apoptosis 22.7 90 0.0031 23.0 3.9 37 394-430 51-87 (97)
342 1s6c_A KV4 potassium channel-i 22.6 3.1E+02 0.011 22.2 9.7 23 245-267 157-179 (183)
343 3aji_A 26S proteasome non-ATPa 22.6 3.5E+02 0.012 22.9 11.1 20 25-44 9-28 (231)
344 3l6a_A Eukaryotic translation 22.2 3.2E+02 0.011 26.0 8.6 27 282-308 15-41 (364)
345 3ctd_A Putative ATPase, AAA fa 21.9 3.8E+02 0.013 23.0 8.1 64 313-376 35-106 (213)
346 3bge_A Predicted ATPase; struc 21.4 3.7E+02 0.013 22.9 7.6 44 316-359 10-56 (201)
347 2fu4_A Ferric uptake regulatio 20.9 2.1E+02 0.0073 19.7 6.6 61 131-192 7-68 (83)
348 4ets_A Ferric uptake regulatio 20.6 59 0.002 26.8 2.8 66 2-68 16-83 (162)
349 1ya0_A SMG-7 transcript varian 20.6 1.7E+02 0.0059 29.3 6.6 73 488-560 156-230 (497)
350 3twe_A Alpha4H; unknown functi 20.4 98 0.0033 15.6 2.4 17 609-625 3-19 (27)
351 2pk8_A Uncharacterized protein 20.3 80 0.0027 22.8 2.8 26 609-634 15-40 (103)
352 2xig_A Ferric uptake regulatio 20.1 2E+02 0.0069 23.1 5.9 62 131-193 17-78 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-43 Score=383.26 Aligned_cols=481 Identities=10% Similarity=-0.044 Sum_probs=404.7
Q ss_pred cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 048321 86 VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHS 165 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 165 (641)
.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4567788888999999989999999999999999999999999999985 57899999999999999999999999999
Q ss_pred HHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-----------------CCCchhHHHHHHHHhcCCCchHH
Q 048321 166 FGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-----------------LRTVVSWNSMVAGCTYGDKFDDS 228 (641)
Q Consensus 166 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A 228 (641)
.+.. .+++..+++.++.+|.++|++++|.++|+++... +.+..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 8864 3678999999999999999999999999954331 12478999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHH--HH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 229 LNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGR--LV-HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 229 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
+++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+|+.++.+|.+.|++++|.++|++
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999998864 44 344455555444443332221 11 44455555555667788889999999999999999999
Q ss_pred CCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhH
Q 048321 305 ICD--RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 305 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
+.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 976 788999999999999999999999999999865 3366788999999999999999999999999765 667899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT 459 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (641)
++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 99999999999999999999998754 568899999999999999999999999999863 44677999999999999
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-------CCCC--hhHHHHHHHHHHHcC
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD--AGIWGTLLCACKIHL 530 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~ll~~~~~~g 530 (641)
|++++|.++|+.+.+..+ .+..+|+.++.+|.+.|++++|+++|+++. ..|+ ..+|..++.+|...|
T Consensus 455 g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQ----YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp TCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999996543 568899999999999999999999999984 3676 679999999999999
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++++|+..++++++++|+++..|..++.+|.+.|++++|.+.++++.+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-42 Score=374.12 Aligned_cols=508 Identities=8% Similarity=-0.047 Sum_probs=407.2
Q ss_pred CchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhc
Q 048321 4 SSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKS 83 (641)
Q Consensus 4 ~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~ 83 (641)
..++..|+.+|.+++. .|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+
T Consensus 70 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~----------------- 129 (597)
T 2xpi_A 70 LKERNAQNTDSLSRED-YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCC----------------- 129 (597)
T ss_dssp ------------CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH-----------------
T ss_pred CCCCCccccchHHHHH-HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHH-----------------
Confidence 3456778888878888 999999999999999999999999985 55777888888888854
Q ss_pred cCcCCCChhHHHHHhhcc--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 048321 84 PFVKCDRLDCAYKIFDEM--AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 84 ~~~~~~~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 161 (641)
.|++++|..+|+.+ ..++..+|+.++.+|.+.|++++|+++|+++. |+.. ...++...++.
T Consensus 130 ----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~---- 192 (597)
T 2xpi_A 130 ----TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ---- 192 (597)
T ss_dssp ----TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC----
T ss_pred ----cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc----
Confidence 45666777777766 36788899999999999999999999998532 2220 01111111111
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHH---HHHHHH
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNF---YRHMMY 237 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~ 237 (641)
..+.+++..+|+.++.+|.+.|++++|.+.|+++... +.+...|..+...+...+..+.+... +..+..
T Consensus 193 -------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 193 -------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp -------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred -------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 1234557788889999999999999999999888765 33455566666555444333322211 455555
Q ss_pred CCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHH
Q 048321 238 NGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWT 314 (641)
Q Consensus 238 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 314 (641)
.+..+...+|+.++..|.+.|++++|..+++.+.+. +++..+++.++.+|.+.|++++|.++|+++ .+.+..+|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHH
Confidence 555566677788888999999999999999998876 578999999999999999999999999988 345778999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
.++.+|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998653 4567889999999999999999999999998865 557889999999999999
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..+...|.+.|++++|.++|+.
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998754 478899999999999999999999999999863 34677999999999999999999999999
Q ss_pred HHhhh---CCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 472 QYDDK---GISYNPE--LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 472 ~~~~~---~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.+.. + ..|+ ..+|..++.+|.+.|++++|.++|+++. .+.+..+|..+...|...|++++|.+.++++++
T Consensus 501 ~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 501 ALLLVKKTQ--SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHSC--CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccc--cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 98543 4 5687 7899999999999999999999999976 444788999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHh
Q 048321 545 LEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~ 562 (641)
++|+++..+..++++|..
T Consensus 579 ~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 579 ISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HCTTCHHHHHHHHHTTC-
T ss_pred cCCCChHHHHHHHHHHhc
Confidence 999999999999998754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-27 Score=242.06 Aligned_cols=372 Identities=12% Similarity=0.049 Sum_probs=262.5
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDD 227 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 227 (641)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666665543 223344445555566666666666666555443 3445566666666666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC--
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI-- 305 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 305 (641)
|++.|+++.+.. | .+...+..+..+|.+.|++++|.+.|+++
T Consensus 86 A~~~~~~al~~~--p----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRLK--P----------------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--c----------------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666655421 2 23344555555555555555555555544
Q ss_pred -CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 306 -CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 306 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
.+.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.+.+ +.+...+.
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 22233345555666666666666666666666542 2234556666666666677777777776666654 44566777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccC
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTG 460 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g 460 (641)
.+...+...|++++|...|++... .+..+|..+...+...|++++|++.|+++.+. .|+ ..++..+...+.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Confidence 778888888888888888876543 35678888999999999999999999999986 454 458888888999999
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++++|...|+.+.+..+ .+...+..++.++.+.|++++|...++++. ..| +..++..+...+...|++++|...
T Consensus 286 ~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCP----THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp CHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999986543 678889999999999999999999999976 434 577899999999999999999999
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
++++++++|+++..|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999988774
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.2e-27 Score=236.74 Aligned_cols=352 Identities=15% Similarity=0.087 Sum_probs=298.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048321 216 VAGCTYGDKFDDSLNFYRHMMYNGFRLDV-TTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 294 (641)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 294 (641)
...+.+.|++++|.+.+.++.+.. |+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345566677777777777766542 433 344445555666777777777777777654 6678899999999999999
Q ss_pred HHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCchHHHHHHHHH
Q 048321 295 IDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSGALELGKWFDNY 370 (641)
Q Consensus 295 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 370 (641)
+++|...|+++ .+.+..+|..+..++.+.|++++|...|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999987 3445668999999999999999999999999886 3543 4566677788899999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-h
Q 048321 371 ACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-R 446 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 446 (641)
+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 55678999999999999999999999998865 35678999999999999999999999999986 565 5
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHH
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 524 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 524 (641)
.++..+...+...|++++|...|+.+.+..+ .+...|..++.+|.+.|++++|++.++++. .+++..+|..+..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP----HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS----SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 6888899999999999999999999996332 347789999999999999999999999986 5567889999999
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+...|++++|+..+++++++.|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.3e-28 Score=252.16 Aligned_cols=186 Identities=15% Similarity=0.015 Sum_probs=176.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC---------hhHHHHHHHHHHHHcCCCChh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKH---------LSLLKSVHSFGIHIGVDADVS 177 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 177 (641)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46899999999999999999999999999999999999999999987664 578999999999999999999
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFV 255 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 255 (641)
+||+||++|++.|++++|.++|++|... .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048321 256 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC 292 (641)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 292 (641)
+.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.1e-27 Score=246.98 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=150.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCc---------hHHHHHHHHHHHHhCCCCchh
Q 048321 210 VSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEA---------LVQGRLVHSHGIHYGFDLDVS 280 (641)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 280 (641)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34677778888888888888888888888888888888888888776543 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 048321 281 VINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
+||+||.+|++.|++++|.++|++| ..||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 8888888888888888888888877 456888888888888888888888888888888888888888888888888
Q ss_pred CcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 357 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
+.|+.++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888887753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-24 Score=227.20 Aligned_cols=437 Identities=10% Similarity=-0.090 Sum_probs=216.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSY 186 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 186 (641)
..|......+.+.|++++|+..|+++.+.. ||..++..+..++...|++++|...++.+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456677788899999999999999998864 788889999999999999999999999998875 33567888888999
Q ss_pred HcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHH
Q 048321 187 AKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRL 265 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 265 (641)
.+.|++++|...|+++... +++......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999888765 344555555555544433333333333333222222222211111100000011111111
Q ss_pred HHHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHhcCCC-----------------CCcchHHHH
Q 048321 266 VHSHGIHYGF---------DLDVSVINTLISMYSK---CGDIDSARVLFDGICD-----------------RTRVSWTAM 316 (641)
Q Consensus 266 ~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~l 316 (641)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1000000000 1112222223332222 4555555555443321 012234444
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI 396 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 396 (641)
...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 555555555555555555554432 224444444445555555555555555554432 22344444455555555555
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 397 GDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 397 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555544321 233444444555555555555555555554431 1122344444445555555555555555544
Q ss_pred hhhCCCCCCC----hhHHHHHHHHhhc---cCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 474 DDKGISYNPE----LDHYSCMADLLGR---KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 474 ~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+..+ -.++ ...+..++..+.+ .|++++|...++++. .+.+..+|..+...+...|++++|...++++++
T Consensus 400 ~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHH--TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhhh--ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 1111 2244444555555 555555555554433 222333444444555555555555555555555
Q ss_pred cCCCCCcc
Q 048321 545 LEPHSAAP 552 (641)
Q Consensus 545 ~~p~~~~~ 552 (641)
++|+++..
T Consensus 478 ~~~~~~~~ 485 (514)
T 2gw1_A 478 LARTMEEK 485 (514)
T ss_dssp HCSSHHHH
T ss_pred hccccHHH
Confidence 55544333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.6e-24 Score=223.46 Aligned_cols=428 Identities=9% Similarity=-0.079 Sum_probs=322.2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHh
Q 048321 142 VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCT 220 (641)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 220 (641)
..+......+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+. +.+...|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 346667778889999999999999999976 78999999999999999999999999988776 556788999999999
Q ss_pred cCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCHHH
Q 048321 221 YGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTL---ISMYSKCGDIDS 297 (641)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~ 297 (641)
+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+....... ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988763 44455444444443322222222222222111111111100000 000111111112
Q ss_pred HHHHHhcCC---------CC-CcchHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCCC--------CHHHHHHH
Q 048321 298 ARVLFDGIC---------DR-TRVSWTAMISGYAQ---KGDLDEALRLFFAMEA-----AGELP--------DLVTVLSM 351 (641)
Q Consensus 298 A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~t~~~l 351 (641)
+...+.... .+ +...+......+.. .|++++|..+|+++.+ ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221 11 23344445554554 8999999999999987 31122 24567778
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 428 (641)
...+...|+++.|...++.+.+.... ..++..+...|...|++++|...|+.+.. .+..+|..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987633 88899999999999999999999998765 46678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQ 508 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 508 (641)
+|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+ .+...+..++..|.+.|++++|...++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP----EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST----TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc----cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999863 23456888888899999999999999999986543 457789999999999999999999999
Q ss_pred hCC----CCCC----hhHHHHHHHHHHH---cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 509 SMP----IKSD----AGIWGTLLCACKI---HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 509 ~~~----~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
++. ..++ ...|..+...+.. .|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875 2222 3388999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hC
Q 048321 578 RN 579 (641)
Q Consensus 578 ~~ 579 (641)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.4e-23 Score=215.67 Aligned_cols=339 Identities=9% Similarity=-0.025 Sum_probs=236.5
Q ss_pred CCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048321 207 RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 286 (641)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (641)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345556666666666666666666666665532 1234444555555555555555555555555543 33455556666
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---Cc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc
Q 048321 287 SMYSKCGDIDSARVLFDGICDR---TR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 360 (641)
.+|.+.|++++|...|+++... +. ..|..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 6666666666666666655222 11 3333333331111 11112233455677
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQL 437 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (641)
+++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776654 45677888888888999999999988888764 46788999999999999999999999999
Q ss_pred HHcCCCCChhh-HHHH------------HHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHH
Q 048321 438 MELDLRPNRVT-FLAV------------LQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 438 ~~~g~~p~~~t-~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 502 (641)
... .|+... +..+ ...|.+.|++++|...|+.+.+..+ -.|. ..+|..++.++.+.|++++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHCCCHHH
Confidence 875 566553 3333 6789999999999999999996433 1121 4588999999999999999
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHH------------HHHHhcC----
Q 048321 503 ALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA------------NKYALGG---- 564 (641)
Q Consensus 503 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g---- 564 (641)
|+..++++. .+.+..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999999976 4446889999999999999999999999999999999999999999 4566666
Q ss_pred -CchHHHHHHHH
Q 048321 565 -RWDGVANIRTM 575 (641)
Q Consensus 565 -~~~eA~~~~~~ 575 (641)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 44556666554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.3e-22 Score=211.32 Aligned_cols=420 Identities=9% Similarity=-0.015 Sum_probs=218.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 048321 106 VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISS 185 (641)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 185 (641)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888888999999999999999998864 3466778888888899999999999999998875 3367788888889
Q ss_pred hHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCC------CCCChhhHHHHHHHhcCCCc
Q 048321 186 YAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNG------FRLDVTTVVSLLSSFVCPEA 259 (641)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~ 259 (641)
|...|++++|...|+.+.. +....+..+..+...+...+|...++++.... ..|+.......+. ..+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ 175 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFD 175 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSC
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcC
Confidence 9999999999999864432 22223333445555556677888888875531 2233222222221 122
Q ss_pred hHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhc--------CCHHHHHHHHhcCCCCC---c-------chHHHHHH
Q 048321 260 LVQGRLVHSHGIHYGFDLDV---SVINTLISMYSKC--------GDIDSARVLFDGICDRT---R-------VSWTAMIS 318 (641)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~---~-------~~~~~li~ 318 (641)
.+.+...+.. ....+. .....+...+... |++++|..+|+.+...+ . .+|..+..
T Consensus 176 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 176 SHLEVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp HHHHHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHH
Confidence 2221111111 001111 1222222222211 24555555555442211 1 12334444
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 048321 319 GYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (641)
.+...|++++|...|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----------------- 311 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP----------------- 311 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH-----------------
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH-----------------
Confidence 455555555555555555543 2334444444555555555555555555554433 22334
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 399 ARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 399 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
+|..+...+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+..+
T Consensus 312 --------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 312 --------------TYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444455555555555555555443 222 23444444455555555555555555543222
Q ss_pred CCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C---CC----ChhHHHHHHHHHHHc----------CCHHHHHHHH
Q 048321 478 ISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I---KS----DAGIWGTLLCACKIH----------LNIEIGEYVA 539 (641)
Q Consensus 478 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~ 539 (641)
.+...+..++..+.+.|++++|...++++. . .+ ....+..+...+... |++++|+..+
T Consensus 376 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 376 ----TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp ----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred ----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 223444455555555555555555554432 0 00 111122233344444 5555566666
Q ss_pred HHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 655555555555555556666666666666555555544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.2e-22 Score=203.75 Aligned_cols=296 Identities=12% Similarity=0.007 Sum_probs=226.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMIS 353 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 353 (641)
.+...+..+...|.+.|++++|..+|+.+ .+.+..+|..+...|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34555666666666666666666666655 23345566666666666666666666666666543 223455666666
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHhhCCC---CChhHHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNV---MVCNAL------------IDMYSKCGSIGDARELFYALPE---KIVVSWT 415 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 415 (641)
.+...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+.+.+ .+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 6666666666666666666543 2233 344433 4558899999999999998764 4678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH-----
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM----- 490 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l----- 490 (641)
.++..|...|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+.+.+..+ .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ----DHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHH
Confidence 99999999999999999999999863 34567899999999999999999999999986432 334445444
Q ss_pred -------HHHhhccCChHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 491 -------ADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 491 -------~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
+..+.+.|++++|+..|+++. ..|+ ...|..+...+...|++++|+..++++++++|+++..|..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 889999999999999999986 4454 346788889999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048321 558 NKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|...|++++|.+.++++.+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.7e-20 Score=195.59 Aligned_cols=421 Identities=12% Similarity=-0.025 Sum_probs=269.3
Q ss_pred CCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 048321 88 CDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 164 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 164 (641)
.|++++|...|++.. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555555432 3477889999999999999999999999998864 345677888999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 165 SFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
+ .... .|+. ....+..+...+....|...++.+... .+........+..+....+.+.+...+..... .
T Consensus 117 ~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 189 (537)
T 3fp2_A 117 S-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--Y 189 (537)
T ss_dssp H-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--S
T ss_pred H-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--c
Confidence 6 3322 2322 222344555566678888888888664 12233445566667777777766655544322 1
Q ss_pred CCChhhH-HHHHHHhcCC--------CchHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 241 RLDVTTV-VSLLSSFVCP--------EALVQGRLVHSHGIHYGFDLD-------VSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 241 ~p~~~t~-~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
.+....+ ..+...+... +++++|..+++.+.+.. +.+ ..++..+...+...|++++|...|+.
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2222222 2222333222 47888999999988765 222 23577778889999999999999998
Q ss_pred C--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhH
Q 048321 305 I--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 305 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
. ..|+..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 346 (537)
T 3fp2_A 269 SINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYP 346 (537)
T ss_dssp HHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHH
T ss_pred HHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 7 33456788899999999999999999999998764 3356677788888888888888888888887754 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCC
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGF 461 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 461 (641)
+.. +...+...|++++|+..|+++.+. .|+ ...+..+...+...|+
T Consensus 347 ~~~-------------------------------la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 347 YIQ-------------------------------LACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHH-------------------------------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHH-------------------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCC
Confidence 444 444455555555555555555554 232 3355555555556666
Q ss_pred hHHHHHHHHHHHhhhCCC--CCCChhHHHHHHHHhhcc----------CChHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGIS--YNPELDHYSCMADLLGRK----------GKLKEALDFVQSMP--IKSDAGIWGTLLCACK 527 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (641)
+++|...|+.+.+..+.. .......+..+..++.+. |++++|...|+++. .+.+..+|..+...+.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 666666666555332200 011112233344555555 77777777777755 3335567777778888
Q ss_pred HcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 528 IHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
..|++++|...+++++++.|+++..
T Consensus 474 ~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888888888888888875443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.7e-19 Score=178.91 Aligned_cols=324 Identities=10% Similarity=0.006 Sum_probs=221.2
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHH
Q 048321 245 TTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYA 321 (641)
Q Consensus 245 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 321 (641)
..+..+...+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|+++ .+.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555666666777777777777766654 345566666667777777777777766655 2234456666666666
Q ss_pred hCCChhHHHHHHHHHHHcCCCC---CH-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELP---DL-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
..|++++|...|++..+. .| +. ..+..+... .. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 677777777777666553 33 21 111111100 00 011223356777788888
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 398 DARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 398 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877653 356677778888888888888888888887752 23445777777788888888888888888875
Q ss_pred hhCCCCCCChhHHH------------HHHHHhhccCChHHHHHHHHhCC-CCCC-hh----HHHHHHHHHHHcCCHHHHH
Q 048321 475 DKGISYNPELDHYS------------CMADLLGRKGKLKEALDFVQSMP-IKSD-AG----IWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 475 ~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~----~~~~ll~~~~~~g~~~~a~ 536 (641)
..+ .+...+. .++..+.+.|++++|...++++. ..|+ .. .+..+...+...|++++|.
T Consensus 217 ~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LDQ----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HCT----TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCc----cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 333 2223222 23667888999999999998865 3343 32 3445677888999999999
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHH
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVL 616 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 616 (641)
..++++++.+|+++..+..++.+|...|++++|.+.++++.+. +|....+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l 346 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHH
Confidence 9999999999999999999999999999999999999988763 45666677777
Q ss_pred HHHHHHHHH
Q 048321 617 DCLALHSRE 625 (641)
Q Consensus 617 ~~l~~~~~~ 625 (641)
.++...+++
T Consensus 347 ~~~~~~~~~ 355 (359)
T 3ieg_A 347 EKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.5e-19 Score=176.59 Aligned_cols=326 Identities=9% Similarity=-0.051 Sum_probs=249.3
Q ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048321 208 TVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLIS 287 (641)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (641)
|+..|..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++.+++.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788889999999999999999999988542 456788888999999999999999999999885 556788999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCc------chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCch
Q 048321 288 MYSKCGDIDSARVLFDGICDRTR------VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGAL 361 (641)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 361 (641)
+|...|++++|...|+.....++ ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999998844332 23333321100 01122233445566666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048321 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLM 438 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (641)
++|..+++.+.+.. +.+..++..+...|...|++++|...|+.+.. .+..+|..+...+...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776666654 44566777788888888888888888877654 356788888888888899999999999888
Q ss_pred HcCCCCChh-hHH------------HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh--hHHHHHHHHhhccCChHHH
Q 048321 439 ELDLRPNRV-TFL------------AVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL--DHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 439 ~~g~~p~~~-t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 503 (641)
+. .|+.. .+. .+...+...|++++|...++.+.+..+ -.+.. ..+..+..++.+.|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCHHHH
Confidence 75 45443 222 225568889999999999999986443 11111 3355688999999999999
Q ss_pred HHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 504 LDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 504 ~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
++.+++.. .+.+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999876 3447779999999999999999999999999999999988888887776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-18 Score=172.05 Aligned_cols=289 Identities=11% Similarity=0.000 Sum_probs=225.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048321 276 DLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMI 352 (641)
Q Consensus 276 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 352 (641)
+.+..++..+...+...|++++|.++|+++ .+.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455666777777777788888888888776 33445567777778888888888888888887753 23455666777
Q ss_pred HHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 048321 353 SGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 353 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 428 (641)
..+...| ++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777788 8888888888887765 44567788888889999999999998887754 34567777888899999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-----CCCChhHHHHHHHHhhccCChHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-----YNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
+|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..... .......+..++.+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998762 2344578888888999999999999999888643200 123467888999999999999999
Q ss_pred HHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH-HhcCCch
Q 048321 504 LDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY-ALGGRWD 567 (641)
Q Consensus 504 ~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 567 (641)
+..+++.. .+.+...|..+...+...|++++|...++++++++|+++..+..++.+| ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999876 4446778899999999999999999999999999999999999999988 4555543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=7.2e-16 Score=168.24 Aligned_cols=495 Identities=12% Similarity=0.083 Sum_probs=346.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhH----HHHHHhhccCcCCCChhHHHHH
Q 048321 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQM----IHGHIVKSPFVKCDRLDCAYKI 97 (641)
Q Consensus 22 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~A~~~ 97 (641)
-+.|+...-++++..--+..++.-...|-+ ++.+++.|...|..++.=.+.-- .....+...++...++..|.-.
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~ia 920 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHH
Confidence 456666666677766666667766666655 78889999888876543211100 0000000001111222222222
Q ss_pred hhcc------------------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHH
Q 048321 98 FDEM------------------------AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVG--IQADFVTVMGLTQAA 151 (641)
Q Consensus 98 f~~~------------------------~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~t~~~ll~~~ 151 (641)
+++- .+.|...|+.++.- .+ +.=.++.++-.... -.-|+.-....++++
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~---~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE---SN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC---Cc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 2211 12345555555421 11 11112333322211 123333456788888
Q ss_pred hccCChhHHHHHHHHHHHHc--CCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHH
Q 048321 152 IHAKHLSLLKSVHSFGIHIG--VDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSL 229 (641)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 229 (641)
...|.+.++.++++.+.-.+ +.-+....+.|+.+..+. +..+...+.++... .+ ...+...+...|.+++|.
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHHHHHhCCCHHHHH
Confidence 99999999999999998432 113446667777777766 55666666655543 22 455778889999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 048321 230 NFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT 309 (641)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 309 (641)
.+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|++.|.+. .|
T Consensus 1070 ~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1070 AIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 9999852 12222233333 667889998888764 45788999999999999999999999775 67
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 310 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 7788999999999999999999999877654 33333345888899999888644442 2 4455667779999
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 390 YSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|.+..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999996 48999999999999999999999987 34578999999999999999998875
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHc--CCHHHHHHHHHHhHcc
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH--LNIEIGEYVAYCLFKL 545 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 545 (641)
.. +..+...+..++..|.+.|.+++|+.+++... ..| ....|.-|...+.+. ++..++.+.|..-..+
T Consensus 1274 l~--------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1274 LH--------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred Hh--------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 43 33566778899999999999999999998865 333 344666666666554 5778888888888887
Q ss_pred CC-----CCCccHHHHHHHHHhcCCchHHHHH
Q 048321 546 EP-----HSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 546 ~p-----~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.| .++..|..++-+|.+.|+|+.|...
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77 6788899999999999999999864
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=9.3e-17 Score=169.54 Aligned_cols=413 Identities=8% Similarity=-0.012 Sum_probs=249.4
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHH-
Q 048321 140 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAG- 218 (641)
Q Consensus 140 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~- 218 (641)
|...|..++.. ...|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++.....|++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 4556666666666666653 22344556666666666666666666666666554455555555532
Q ss_pred HhcCCCchHHHH----HHHHHHHC-CCCCC-hhhHHHHHHHhcC---------CCchHHHHHHHHHHHHhCCCCchhHHH
Q 048321 219 CTYGDKFDDSLN----FYRHMMYN-GFRLD-VTTVVSLLSSFVC---------PEALVQGRLVHSHGIHYGFDLDVSVIN 283 (641)
Q Consensus 219 ~~~~g~~~~A~~----~~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (641)
....|+.++|.+ +|++.... |..|+ ...|...+....+ .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 233455555544 44444322 33332 2233333322211 344555555555554410000011222
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH------HcC---CCCCH--------H
Q 048321 284 TLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAME------AAG---ELPDL--------V 346 (641)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~p~~--------~ 346 (641)
.........|. ..+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111100000 00001100 12345566666665532 111 23331 2
Q ss_pred HHHHHHHHhc----CcCch----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHh
Q 048321 347 TVLSMISGCG----QSGAL----ELGKWFDNYACSGGLKDNVMVCNALIDMYSK-------CGSIG-------DARELFY 404 (641)
Q Consensus 347 t~~~ll~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 404 (641)
.|...+.... ..++. ..+..++++.+... +.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 3333332221 11222 36677888887753 5567888888888875 68877 8999998
Q ss_pred hCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 405 ALPE---K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 405 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
+..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|+++|+...+..+
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~- 387 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 387 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 8764 3 5778999999999999999999999999985 6654 3677788888889999999999999985322
Q ss_pred CCCCChhHHHHHHHH-hhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc----
Q 048321 479 SYNPELDHYSCMADL-LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA---- 551 (641)
Q Consensus 479 ~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 551 (641)
.+...|...+.. +...|++++|..+|+... ..| ++..|..++..+...|+.+.|..++++++...|.++.
T Consensus 388 ---~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 388 ---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp ---CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ---CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 223333332222 336899999999999865 334 6778999999999999999999999999998776655
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.|...+......|+.+.+.++.+.+.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888899999999998887654
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=5.1e-19 Score=173.61 Aligned_cols=287 Identities=9% Similarity=0.021 Sum_probs=135.4
Q ss_pred HcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHH
Q 048321 187 AKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLV 266 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 266 (641)
-+.|++++|.++++++.. | .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 14 ~~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 367889999999999855 4 48999999999999999999999653 6778999999999999999999998
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 048321 267 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV 346 (641)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 346 (641)
+...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8877764 45578889999999999999998888864 67779999999999999999999999976 3
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 426 (641)
.|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6888999999999999999999887 368899999999999999999988877765 344445568889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHh--ccCChHHHHHHHHHHHhhhCCCCCC------ChhHHHHHHHHhhcc
Q 048321 427 FVEALDLFHQLMELDLRPNR-VTFLAVLQACT--HTGFLEKGWAISIIQYDDKGISYNP------ELDHYSCMADLLGRK 497 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~ 497 (641)
+++|+.+++..... .+.. ..|+.+.-+|+ +.+++.+..+.|..- -. ++| +...|.-++.+|...
T Consensus 223 ~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---in--i~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 223 FEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VN--IPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SC--HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hc--CcHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998854 3433 35555544444 455666666665432 22 444 467799999999999
Q ss_pred CChHHHHHHHHhCC
Q 048321 498 GKLKEALDFVQSMP 511 (641)
Q Consensus 498 g~~~~A~~~~~~~~ 511 (641)
++++.|...+-+-+
T Consensus 296 ~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 296 EEYDNAIITMMNHP 309 (449)
T ss_dssp TCHHHHHHHHHHST
T ss_pred chHHHHHHHHHhCC
Confidence 99999988766653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=8.6e-18 Score=165.82 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=228.3
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 048321 307 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL 386 (641)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (641)
..+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3466678888999999999999999999998764 2334455566777888999999999999999865 5577889999
Q ss_pred HHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 048321 387 IDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFL 462 (641)
Q Consensus 387 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 462 (641)
...|...| ++++|...|++... .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998765 356789999999999999999999999999863 23345777788899999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C----------CCChhHHHHHHHHHHHcCC
Q 048321 463 EKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I----------KSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 463 ~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g~ 531 (641)
++|...++.+.+..+ .+...+..++..+.+.|++++|...++++. . +.+..+|..+...+...|+
T Consensus 176 ~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 176 KLAERFFSQALSIAP----EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999986433 457889999999999999999999998864 1 3346789999999999999
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999987664
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=2.8e-18 Score=172.29 Aligned_cols=279 Identities=13% Similarity=0.001 Sum_probs=220.3
Q ss_pred HHhcCCHHHHHH-HHhcCC---CC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc
Q 048321 289 YSKCGDIDSARV-LFDGIC---DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 289 ~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 360 (641)
+.-.|++++|.. .|++.. +. +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888887 777542 11 34568888888999999999999999988763 3456677888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHH---------------HHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTT---------------MIAGCA 422 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 422 (641)
+++|...++.+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888875 55778888899999999999999999987654 2 2222221 233344
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC
Q 048321 423 LNGEFVEALDLFHQLMELDLRPN---RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK 499 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 499 (641)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+..+ .+...+..++.++.+.|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP----NDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTC
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHcCC
Confidence 889999999999999986 454 56888889999999999999999999986433 457889999999999999
Q ss_pred hHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-----------CccHHHHHHHHHhcCCc
Q 048321 500 LKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-----------AAPYVEMANKYALGGRW 566 (641)
Q Consensus 500 ~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 566 (641)
+++|+..++++. .+.+..+|..+...+...|++++|...+++++++.|++ +..|..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999976 44467789999999999999999999999999999887 68899999999999999
Q ss_pred hHHHHHHHH
Q 048321 567 DGVANIRTM 575 (641)
Q Consensus 567 ~eA~~~~~~ 575 (641)
++|..++++
T Consensus 347 ~~A~~~~~~ 355 (368)
T 1fch_A 347 DAYGAADAR 355 (368)
T ss_dssp GGHHHHHTT
T ss_pred HhHHHhHHH
Confidence 999998763
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.5e-18 Score=167.66 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=122.4
Q ss_pred CCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 048321 87 KCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 166 (641)
Q Consensus 87 ~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 166 (641)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4688999999999997664 899999999999999999999975 36888999999999999999999998888
Q ss_pred HHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhh
Q 048321 167 GIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTT 246 (641)
Q Consensus 167 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 246 (641)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 8774 45678899999999999999999988853 77789999999999999999999999977 47
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 048321 247 VVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDL 326 (641)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (641)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888889999999999988888877 377888888999999999999877776654 3333345678888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHh--cCcCchHHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhcCCHHH
Q 048321 327 DEALRLFFAMEAAGELPDLVTVLSMISGC--GQSGALELGKWFDNYACSGGLKD------NVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 327 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 398 (641)
++|..+++...... +-....|+-+--++ -+.+++.+..+.|.. +.+++| +...|.-++-.|..-++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 88888888876543 33333444443333 334455555444431 222222 34566667777777777776
Q ss_pred HHHHHhhC
Q 048321 399 ARELFYAL 406 (641)
Q Consensus 399 A~~~~~~~ 406 (641)
|....-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 66654433
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.6e-16 Score=165.96 Aligned_cols=366 Identities=10% Similarity=-0.048 Sum_probs=264.8
Q ss_pred ChhHHHHHHHHhHc----CCChhHHHHHHhcccCCCCCchhHHHHHHHHhc----CCCchHHHHHHHHHHHCCCCCChhh
Q 048321 175 DVSVCNTWISSYAK----CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTY----GDKFDDSLNFYRHMMYNGFRLDVTT 246 (641)
Q Consensus 175 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 246 (641)
+...+..|...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|++.|++..+.| +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 44455555555555 56666666666655442 345556666666666 666677777777666654 3344
Q ss_pred HHHHHHHhcC----CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCcchHHHHH
Q 048321 247 VVSLLSSFVC----PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----CGDIDSARVLFDGIC-DRTRVSWTAMI 317 (641)
Q Consensus 247 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li 317 (641)
+..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|++.. ..+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444544 567777777777776654 45666677777776 678888888887653 34566777777
Q ss_pred HHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 318 SGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 318 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
..|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 77777 788888888888887764 44455555555543 678889999888888765 34566677777
Q ss_pred HHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 390 YSK----CGSIGDARELFYALPE-KIVVSWTTMIAGCALN-----GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT 459 (641)
Q Consensus 390 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (641)
|.. .++.++|...|+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...|...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 877 8899999999988765 4667778888888877 89999999999999864 345666666666665
Q ss_pred C---ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----
Q 048321 460 G---FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI---- 528 (641)
Q Consensus 460 g---~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 528 (641)
| ++++|.+.|+...+. .+...+..+..+|.. .+++++|...|++.....++..+..|...+..
T Consensus 342 g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 6 789999999998842 357788888888888 89999999999997645567788888888888
Q ss_pred cCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHh
Q 048321 529 HLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYAL 562 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 562 (641)
.++.++|...++++.+.+|+ ++.....++.++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 66677777766554
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.3e-14 Score=158.41 Aligned_cols=368 Identities=10% Similarity=0.075 Sum_probs=237.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhCCC--CCCcccHHHHHHHHhccCCchHHhHHHHHHhh-------ccCcCCCChhH
Q 048321 23 NSQIREAVNKNEAHKTLLLFRQMKQNDI--EPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK-------SPFVKCDRLDC 93 (641)
Q Consensus 23 ~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~ 93 (641)
...+.+|...|.+.+|++++++..-.+- .-+....+.++..-.+. +...+.......-. .-+...|.+++
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 5678899999999999999999984321 11223444455444443 33333333332210 00145678888
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCC
Q 048321 94 AYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVD 173 (641)
Q Consensus 94 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (641)
|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+.+++...|++++|...|...
T Consensus 1068 Af~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1068 AFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 8888888642 1222233322 567788888877754 23567778888888888888888777553
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048321 174 ADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSS 253 (641)
Q Consensus 174 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 253 (641)
.|...|..++..+.+.|++++|.+.+.......+++...+.++.+|++.+++++...+. . .|+...+..+...
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 46667777888888888888888888765554344444445777888887777533332 1 2566667777788
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 048321 254 FVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLF 333 (641)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (641)
|...|++++|...|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888888888774 36778888888888888888888766 44567777777777777777776655
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHHhhCCC---
Q 048321 334 FAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK--CGSIGDARELFYALPE--- 408 (641)
Q Consensus 334 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--- 408 (641)
.. +..++..+..++..|.+.|.+++|..+++..+... +-....|+-|...|++ -+++.++.+.|..-..
T Consensus 1274 l~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 43 23344455567777777777777777776666544 3344455555555554 3455555555554332
Q ss_pred -----CChhHHHHHHHHHHHcCChHHHH
Q 048321 409 -----KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 409 -----~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
.+...|..++..|.+.|+++.|.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 24456777777777777777776
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.9e-16 Score=163.41 Aligned_cols=410 Identities=10% Similarity=0.035 Sum_probs=290.4
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (641)
+.|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+++++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347789999998 58899999999999999875 23455578999999999999999999999999864 677788777
Q ss_pred HHH-hHcCCChhHHHH----HHhcccC----CCCCchhHHHHHHHHhc---------CCCchHHHHHHHHHHHCCCCCCh
Q 048321 183 ISS-YAKCDDLKMAEL----VFCGIEE----RLRTVVSWNSMVAGCTY---------GDKFDDSLNFYRHMMYNGFRLDV 244 (641)
Q Consensus 183 l~~-~~~~g~~~~A~~----~~~~~~~----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 244 (641)
+.. ....|+.+.|.+ +|+.... .+.+...|...+....+ .|++++|..+|++.... |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 753 345688877765 6665532 13456788888876654 68899999999999872 432
Q ss_pred ---hhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-------CC------CC
Q 048321 245 ---TTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG-------IC------DR 308 (641)
Q Consensus 245 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 308 (641)
..|...... +.. .| ..+...++. .+.+++..|..++.. +. .|
T Consensus 163 ~~~~~~~~~~~~-------e~~---------~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKY-------EEG---------IN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHH-------HHH---------HC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHH-------HHh---------hc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222211110 000 00 001111111 122334445444332 11 12
Q ss_pred C--------cchHHHHHHHHHhC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-------cCchH---
Q 048321 309 T--------RVSWTAMISGYAQK----GDL----DEALRLFFAMEAAGELPDLVTVLSMISGCGQ-------SGALE--- 362 (641)
Q Consensus 309 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~~~~~--- 362 (641)
+ ...|...+...... ++. +++..+|++..... +-+...|......+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 23555555433322 232 37788898888752 3345566666666553 68877
Q ss_pred ----HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHH
Q 048321 363 ----LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IV-VSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 363 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
.|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999988633355688999999999999999999999998764 3 33 58999999999999999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHH-HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 435 HQLMELDLRPNR-VTFLAVLQA-CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 435 ~~m~~~g~~p~~-~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
++..+. .|+. ..+...... +...|+.++|..+|+...+..+ .+...|..+++.+.+.|+.++|..+|++..
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999985 3432 333332222 3468999999999999997654 467889999999999999999999999975
Q ss_pred C---CCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 512 I---KSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 512 ~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
. .|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 232 338988899999999999999999999999885
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.2e-16 Score=164.40 Aligned_cols=369 Identities=8% Similarity=-0.075 Sum_probs=190.7
Q ss_pred hhHHHHHHHHhHcCCChhHHHHHHhcccCC----------CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCC------
Q 048321 176 VSVCNTWISSYAKCDDLKMAELVFCGIEER----------LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNG------ 239 (641)
Q Consensus 176 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 239 (641)
...||.|...|...|+.++|++.|++..+. +....+|+.+...|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666677777777776666554221 2234556666666666666666666666554310
Q ss_pred CCC-ChhhHHHHHHHh--cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHH
Q 048321 240 FRL-DVTTVVSLLSSF--VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAM 316 (641)
Q Consensus 240 ~~p-~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 316 (641)
..+ ...++.....++ ...+++++|...|+..++.. +.++..+..+..++.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~------------------------- 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR------------------------- 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------------------------
Confidence 001 112222222221 12234444444444444432 1222222222222111
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH----hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISG----CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
+...++.++|++.|++..+.. +.+...+..+... ....++.++|..+++...... +.+..++..+...|.+
T Consensus 185 ---l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 185 ---LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp ---HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred ---hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 223344455555555544432 1122222222221 122344555555555555443 3344455555555555
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCChhhHH
Q 048321 393 CGSIGDARELFYALPE---KIVVSWTTMIAGCAL-------------------NGEFVEALDLFHQLMELDLRPNRVTFL 450 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~ 450 (641)
.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 6666666555555433 223344444333321 234678888898888763 23345788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh----HHHHHHH-HhhccCChHHHHHHHHhCC-CCCChhHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD----HYSCMAD-LLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLC 524 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~ 524 (641)
.+...+...|++++|...|+++.+ +.|+.. .+..+.. .+.+.|++++|+..|++.. ..|+...+..
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--- 410 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFS-----KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--- 410 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---
T ss_pred hHHHHHHHhccHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---
Confidence 888899999999999999999885 334332 2333333 3457899999999998865 6666544332
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEE
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLF 590 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~ 590 (641)
....+..++++.++.+|+++.+|..+|.+|...|++++|.+.+++..+.+.....+.+|+
T Consensus 411 ------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 ------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234556778888999999999999999999999999999999999988766555555554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=7.9e-18 Score=168.85 Aligned_cols=259 Identities=9% Similarity=-0.073 Sum_probs=213.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALID 388 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 388 (641)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999988763 3456788888888999999999999999988865 556788999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhhHHHH
Q 048321 389 MYSKCGSIGDARELFYALPEKI-------------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP---NRVTFLAV 452 (641)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 452 (641)
.|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999998876521 123345578889999999999999999986 44 46688889
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 530 (641)
...+...|++++|...|+.+.+..+ .+...|..++.+|.+.|++++|+..|+++. ..| +..+|..+...|...|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP----EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999996543 568899999999999999999999999976 344 5778999999999999
Q ss_pred CHHHHHHHHHHhHccCCC------------CCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 531 NIEIGEYVAYCLFKLEPH------------SAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
++++|...+++++++.|+ +...|..++.++...|+.+.|.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999876 366789999999999999999887654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=4.8e-16 Score=149.62 Aligned_cols=268 Identities=10% Similarity=-0.062 Sum_probs=212.9
Q ss_pred HHhcCCHHHHHHHHhcCCCCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHH
Q 048321 289 YSKCGDIDSARVLFDGICDRTR----VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELG 364 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 364 (641)
....|++..|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456888888888887654432 2445567888999999998886654 2356677888888888888999999
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 048321 365 KWFDNYACSGGL-KDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLR 443 (641)
Q Consensus 365 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (641)
...++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..+.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 999999888764 44567777888999999999999999999 567889999999999999999999999999987 4
Q ss_pred CChhhHH---HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhH
Q 048321 444 PNRVTFL---AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGI 518 (641)
Q Consensus 444 p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 518 (641)
|+..... ..+..+...|++++|..+|+++.+..+ .+...++.++.++.+.|++++|+..++++. ..| ++.+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7654221 233444556999999999999997654 678899999999999999999999999976 444 6778
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 519 WGTLLCACKIHLNIEI-GEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
|..++..+...|+.++ +.++++++++++|+++. +.++..+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 9999999999998865 67899999999999754 34566666667666543
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.2e-15 Score=155.17 Aligned_cols=351 Identities=12% Similarity=0.052 Sum_probs=293.6
Q ss_pred CCchhHHHHHHHHhc----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcC----CCchHHHHHHHHHHHHhCCCCc
Q 048321 207 RTVVSWNSMVAGCTY----GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVC----PEALVQGRLVHSHGIHYGFDLD 278 (641)
Q Consensus 207 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 278 (641)
.++..+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 577788888888887 899999999999998874 45666677777776 899999999999998876 6
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048321 279 VSVINTLISMYSK----CGDIDSARVLFDGICD-RTRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVL 349 (641)
Q Consensus 279 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~ 349 (641)
...+..|..+|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778889999988 8899999999998743 456678888888887 789999999999998875 566666
Q ss_pred HHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHH
Q 048321 350 SMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK----CGSIGDARELFYALPE-KIVVSWTTMIAG 420 (641)
Q Consensus 350 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 420 (641)
.+...+.. .++.++|..++....+.| +...+..+..+|.. .+++++|...|+...+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666665 789999999999999875 45677888888886 8999999999998765 466778888888
Q ss_pred HHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc-----CChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 421 CAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT-----GFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 421 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
|.. .+++++|+..|++..+.| +...+..+...|... +++++|...|+...+ .+ +...+..+.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~-----~~~a~~~lg 335 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG-----DATAQANLG 335 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT-----CHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC-----CHHHHHHHH
Confidence 888 899999999999998764 445666677777776 899999999999984 23 456777888
Q ss_pred HHhhccC---ChHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh--
Q 048321 492 DLLGRKG---KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL-- 562 (641)
Q Consensus 492 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 562 (641)
.+|.+.| ++++|++.|++.....++..+..|...|.. .++.++|...++++.+.. ++..+..++.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 789999999997755678889999999988 899999999999998864 57899999999998
Q ss_pred --cCCchHHHHHHHHHHhCC
Q 048321 563 --GGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 563 --~g~~~eA~~~~~~m~~~~ 580 (641)
.+++++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988866
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=6.3e-17 Score=162.41 Aligned_cols=249 Identities=10% Similarity=-0.006 Sum_probs=117.0
Q ss_pred hHcCCChhHHHH-HHhcccCCCC-----CchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCc
Q 048321 186 YAKCDDLKMAEL-VFCGIEERLR-----TVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEA 259 (641)
Q Consensus 186 ~~~~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 259 (641)
+.-.|++++|.. .|++.....| +...|..+...+.+.|++++|+..|+++.+..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------- 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------------------- 94 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------
Confidence 334466666666 6665443311 24456666666666666666666666666542
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 048321 260 LVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAM 336 (641)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (641)
+.+..++..+..+|.+.|++++|...|+++ .+.+..+|..+...|...|++++|...|+++
T Consensus 95 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 95 ----------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223344444555555555555555555443 2234445555555566666666666666655
Q ss_pred HHcCCCCCHHH-HHH---------------HHHHhcCcCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHH
Q 048321 337 EAAGELPDLVT-VLS---------------MISGCGQSGALELGKWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 337 ~~~~~~p~~~t-~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 399 (641)
.... |+... +.. .+..+...|++++|...++.+.+..... +..++..+...|.+.|++++|
T Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 159 LRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5532 21110 000 1111224455555555555555433111 344555555555555555555
Q ss_pred HHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 400 RELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 400 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
...|+++.. .+..+|..+...+...|++++|+..|+++.+. .|+ ..++..+..+|...|++++|...|+.+.+
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554432 23445555555555555555555555555543 222 23444445555555555555555555543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=5.3e-17 Score=159.88 Aligned_cols=258 Identities=12% Similarity=-0.060 Sum_probs=184.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 391 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 391 (641)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 1234444455555555555555555555555543 334555556666666
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 392 KCGSIGDARELFYALPE---KIVVSWTTM--------------IA-GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL 453 (641)
Q Consensus 392 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 453 (641)
..|++++|.+.|+++.. .+...+..+ .. .+...|++++|+..++++.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666655433 112222222 22 3667789999999999999863 33556888888
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 531 (641)
..+...|++++|...++.+.+..+ .+...+..++..+.+.|++++|...++++. .+.+..+|..+...+...|+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999986433 457889999999999999999999999976 34467789999999999999
Q ss_pred HHHHHHHHHHhHccCCC------------CCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 532 IEIGEYVAYCLFKLEPH------------SAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+++|...+++++++.|+ ++..+..++.+|...|++++|.+++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6788999999999999999999987643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.2e-16 Score=153.88 Aligned_cols=246 Identities=8% Similarity=-0.052 Sum_probs=202.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDL--VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3456678999999999887643 34544 3445667889999999999875543 23667888899999999999
Q ss_pred CHHHHHHHHhhCC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 395 SIGDARELFYALP----EK-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 395 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566778888999999999999999987 345668888889999999999999999
Q ss_pred HHHHhhhCCCCCCChh---HHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 470 IIQYDDKGISYNPELD---HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.+.+. .|+.. ...+++..+...|++++|..+|+++. .+.++..|+.+..++...|++++|+..++++++
T Consensus 154 ~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 154 KKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999863 35532 12344566667799999999999987 566788999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHhcCCchH-HHHHHHHHHhC
Q 048321 545 LEPHSAAPYVEMANKYALGGRWDG-VANIRTMMKRN 579 (641)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~m~~~ 579 (641)
++|+++.++..++.++...|++++ +.++++++.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987 56888888764
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=8.3e-17 Score=161.38 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 048321 345 LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGC 421 (641)
Q Consensus 345 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 421 (641)
...+..+...+.+.|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777888899999999999999999876 56788999999999999999999999998764 4678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChh-h----------HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRV-T----------FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t----------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|++++|+..|+++.+. .|+.. . +..+...+...|++++|...|+.+.+..+ -.++...+..+
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~l 219 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG--DMIDPDLQTGL 219 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC--SSCCHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc--CccCHHHHHHH
Confidence 9999999999999999985 34432 2 23346788999999999999999997554 22368899999
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
+.+|.+.|++++|++.++++. .+.+..+|..+...|...|++++|+..+++++++.|+++..+..++.+|...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999976 445678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 048321 569 VANIRTMMKRN 579 (641)
Q Consensus 569 A~~~~~~m~~~ 579 (641)
|.+.++++.+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.9e-15 Score=157.17 Aligned_cols=384 Identities=9% Similarity=-0.040 Sum_probs=237.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHH-----c--CCC-ChhHHHHHHHHhHcCCChhHHHHHHhcccCC------
Q 048321 140 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI-----G--VDA-DVSVCNTWISSYAKCDDLKMAELVFCGIEER------ 205 (641)
Q Consensus 140 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 205 (641)
....|+.+-..+...|+.++|.+.+++.++. + ..| ...+|+.+..+|...|++++|...|++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456889999999999999999999988763 1 122 3567889999999999999999998876432
Q ss_pred ---CCCchhHHHHHHHHhc--CCCchHHHHHHHHHHHCCCCCChh-hHHHHHHH---hcCCCchHHHHHHHHHHHHhCCC
Q 048321 206 ---LRTVVSWNSMVAGCTY--GDKFDDSLNFYRHMMYNGFRLDVT-TVVSLLSS---FVCPEALVQGRLVHSHGIHYGFD 276 (641)
Q Consensus 206 ---~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~ 276 (641)
.....+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1224456655555544 45799999999999875 35543 33333333 445677888999999888875 4
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 048321 277 LDVSVINTLISMYSK----CGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD-LVTV 348 (641)
Q Consensus 277 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~ 348 (641)
.+..++..+...+.. .|++++|.+.+++. .+.+..++..+...|...|++++|...|++..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 456666666555544 46778899988865 4456678889999999999999999999998875 344 3444
Q ss_pred HHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcC
Q 048321 349 LSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNG 425 (641)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 425 (641)
..+...+...+.. ..... ...........+..+.|...|+.... .+..+|..+...+...|
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 4444333211100 00000 00011111122345677777766543 45678889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChh--hHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRV--TFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 502 (641)
++++|+..|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+........ +.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-----i~~~~~~~~~~~---------~~ 414 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-----INQKSREKEKMK---------DK 414 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-----SCCCCHHHHHHH---------HH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCcccHHHHHHH---------HH
Confidence 9999999999999864333221 2333332 34578999999999999886 556644333222 23
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 503 ALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 503 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+..+++... .+.++.+|..|...+...|++++|++.+++++++.|.+|.++.-+|+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 334444432 34567799999999999999999999999999999998887776653
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=4.7e-15 Score=145.87 Aligned_cols=265 Identities=9% Similarity=-0.055 Sum_probs=144.5
Q ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048321 209 VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM 288 (641)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (641)
...|..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...++.+.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 44556666666677777777777776655321 133333444444444444444444444444432
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HH-------------HHH-HH
Q 048321 289 YSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV-TV-------------LSM-IS 353 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~-------------~~l-l~ 353 (641)
+.+..+|..+...|...|++++|...|+++.... |+.. .+ ..+ ..
T Consensus 86 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 86 ------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred ------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2233445555555555555555555555555432 1111 11 111 11
Q ss_pred -HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHH
Q 048321 354 -GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVE 429 (641)
Q Consensus 354 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 429 (641)
.+...|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2566677777777777777654 34556666677777777777777776666543 345566666666666777777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC--------ChhHHHHHHHHhhccCChH
Q 048321 430 ALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP--------ELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~ 501 (641)
|+..|+++.+.. +.+..++..+...+...|++++|.+.|+.+.+..+....+ +...|..+..++.+.|+++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 777776666642 2233456666666666667777766666666433200000 2445555556666666666
Q ss_pred HHHHHHHhC
Q 048321 502 EALDFVQSM 510 (641)
Q Consensus 502 ~A~~~~~~~ 510 (641)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 666555543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=174.59 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=126.0
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCC-----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHH
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEER-----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVS 249 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 249 (641)
-..+||+||++||++|++++|.++|++|.+. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999876532 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHhC
Q 048321 250 LLSSFVCPEAL-VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDR-----TRVSWTAMISGYAQK 323 (641)
Q Consensus 250 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 323 (641)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999875 789999999999999999999999998888876666666665555321 233445566666665
Q ss_pred C
Q 048321 324 G 324 (641)
Q Consensus 324 g 324 (641)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.6e-15 Score=139.36 Aligned_cols=193 Identities=12% Similarity=-0.026 Sum_probs=157.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAV 452 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 452 (641)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677888889999999999999999998765 46778999999999999999999999999986 5654 477788
Q ss_pred HHHHhcc-----------CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHH
Q 048321 453 LQACTHT-----------GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIW 519 (641)
Q Consensus 453 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 519 (641)
..++... |++++|...|+...+..+ .+...+..+..+|...|++++|+..|++.. . .++..|
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP----RYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 8888899 999999999999996433 347788999999999999999999999976 5 778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988754
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.8e-15 Score=139.71 Aligned_cols=214 Identities=9% Similarity=-0.017 Sum_probs=159.2
Q ss_pred HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----C----hhHHHHHHHH
Q 048321 351 MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K----I----VVSWTTMIAG 420 (641)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~ 420 (641)
+...+...|++++|..+++.+.+.. .+..++..+..+|...|++++|...|+.... | + ..+|..+...
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333444444444444444444433 3444555555555555555555555555433 1 1 4677888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 500 (641)
+...|++++|+..|+++.+. .|+. ..+...|++++|...++.+....+ .+...+..++..+.+.|++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP----EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc----chHHHHHHHHHHHHHhcCH
Confidence 88889999999999988885 4553 345666888999999998885322 3466788889999999999
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 501 KEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 501 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++|+..++++. .+.+..+|..+...+...|++++|+..++++++..|+++..|..++.+|...|++++|.+.+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999876 4456778999999999999999999999999999999999999999999999999999999988776
Q ss_pred C
Q 048321 579 N 579 (641)
Q Consensus 579 ~ 579 (641)
.
T Consensus 236 ~ 236 (258)
T 3uq3_A 236 K 236 (258)
T ss_dssp H
T ss_pred h
Confidence 4
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=169.02 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=100.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALP-------EKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF 449 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 449 (641)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888886653 478888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHH
Q 048321 450 LAVLQACTHTGFL-EKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDF 506 (641)
Q Consensus 450 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 506 (641)
+++|.++++.|.. ++|.++|++|. ..| +.||..+|++++....|.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~-~kG--~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMS-QEG--LKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH-HHT--CCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-HcC--CCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888888874 67888888888 567 888888888887766665444443333
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.6e-14 Score=136.71 Aligned_cols=242 Identities=11% Similarity=-0.091 Sum_probs=191.2
Q ss_pred HhCCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 321 AQKGDLDEALRLFFAMEAAGEL--P-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
...|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457788888888888775321 1 34567777778888888999988888888765 456788888999999999999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 398 DARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 398 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+|.+.|++... .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988765 46788999999999999999999999999986 57666555566666778999999999988886
Q ss_pred hhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 475 DKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 475 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..+ ++...+. ++..+...++.++|++.+++.. ..|+ ..+|..+...+...|++++|...++++++++|+
T Consensus 173 ~~~----~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 KSD----KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HSC----CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cCC----cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 543 4444444 7777888888999999998866 3332 568888999999999999999999999999997
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHH
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIR 573 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~ 573 (641)
+. ...+.++...|++++|.+.+
T Consensus 248 ~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC---HHHHHHHHHHHHHHHC----
T ss_pred hH---HHHHHHHHHHHHHHhhHHHH
Confidence 64 34477888999999998765
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.4e-15 Score=138.26 Aligned_cols=232 Identities=10% Similarity=-0.064 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC--CCc----hhHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDN----VMVCNA 385 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 385 (641)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555666666666666666666666654 5555666666666666666666666666655321 111 466777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCCh
Q 048321 386 LIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFL 462 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 462 (641)
+...|.+.|++++|...|++... ++ ...+...|++++|+..++++... .|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 77788888888888888877654 33 23456678889999999988875 4544 4677777788899999
Q ss_pred HHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 463 EKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 463 ~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
++|...|+.+.+..+ .+...+..++.+|.+.|++++|+..++++. .+.+...|..+...+...|++++|...++
T Consensus 156 ~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999886443 457788889999999999999999998876 44457788889999999999999999999
Q ss_pred HhHccC------CCCCccHHHHHH
Q 048321 541 CLFKLE------PHSAAPYVEMAN 558 (641)
Q Consensus 541 ~~~~~~------p~~~~~~~~l~~ 558 (641)
+++++. |++...+..+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 999988 776555555443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=4.5e-14 Score=134.89 Aligned_cols=244 Identities=9% Similarity=-0.082 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhc
Q 048321 282 INTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD--LVTVLSMISGCG 356 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~ 356 (641)
+......+...|++++|+..|++. .+.+...|..+...|...|++++|+..|++..+....|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444556666666777776666655 223444666666666666666666666666665321111 123444555555
Q ss_pred CcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 048321 357 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
..|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~-------------- 150 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ-------------- 150 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH--------------
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH--------------
Confidence 5555555555555555533 22334444455555555555555555544443 12333333331
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC---hHHHHHHHHhC
Q 048321 434 FHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK---LKEALDFVQSM 510 (641)
Q Consensus 434 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 510 (641)
.+...+++++|...|+.+.+..+ .+...+..+..++...|+ +++|...++++
T Consensus 151 ---------------------~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 151 ---------------------AYYYNKEYVKADSSFVKVLELKP----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp ---------------------HHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 22223345555555555443211 223344444444444444 44444444443
Q ss_pred C----CCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 511 P----IKSD------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 511 ~----~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
. ..|+ ..+|..+...+...|++++|...++++++++|+++.++..+..+....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 2 1122 13667788888899999999999999999999988888777776665543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.7e-13 Score=129.20 Aligned_cols=196 Identities=9% Similarity=-0.076 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC 456 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 456 (641)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677777888888888888888887653 356788888888888999999999999888763 23455777778888
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIE 533 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~ 533 (641)
...|++++|..+|+.+.+ .+ ..| +...+..++..|.+.|++++|.+.++++. .+.+...+..+...+...|+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DT--LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHh-Cc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 889999999999988875 22 334 46678888888999999999999998865 3345778888888899999999
Q ss_pred HHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999999999999999888764
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=5.8e-14 Score=131.53 Aligned_cols=172 Identities=11% Similarity=0.040 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
.++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3333444444444444444444443322 233444444455555555555555555554431 122334444444555
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
..|++++|...++.+.+..+ .+...+..++..+.+.|++++|+..++++. .+.+..+|..+...+...|++++|
T Consensus 137 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELNE----NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HhccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 55555555555555543221 234444445555555555555555554433 222344455555555555555555
Q ss_pred HHHHHHhHccCCCCCccHHHHH
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
...++++++++|+++..+..++
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHccCcchHHHHHHHH
Confidence 5555555555555444444433
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=8.1e-14 Score=130.51 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=156.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677778888899999999999988754 467889999999999999999999999999863 334568888888
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|.+.++.+.+..+ .+...+..++..+.+.|++++|...++++. .+.+...+..+...+...|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM----ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC----CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999986543 567889999999999999999999999976 445677899999999999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999998764
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=3.4e-13 Score=124.43 Aligned_cols=198 Identities=9% Similarity=-0.087 Sum_probs=157.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.+..++..+...|...|++++|...|+.+.+ .+...|..+...+...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456677778888888888888888877653 356678888888888899999999998888762 234557777788
Q ss_pred HHhcc-CChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC
Q 048321 455 ACTHT-GFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL 530 (641)
Q Consensus 455 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g 530 (641)
.+... |++++|...++.+.+ .+ ..|+ ...+..++..+.+.|++++|+..++++. .+.+...|..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DP--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-ST--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHc-Cc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 88888 999999999988885 32 2333 6678888888889999999999888865 3345678888888888999
Q ss_pred CHHHHHHHHHHhHccCC-CCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 531 NIEIGEYVAYCLFKLEP-HSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++++|...++++++..| +++..+..++.++...|+.++|..+++.+...
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999988 88888888888889999999999988887653
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=3.8e-13 Score=133.80 Aligned_cols=245 Identities=8% Similarity=-0.022 Sum_probs=192.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc-hHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA-LELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+...+...|+ +++|...++.+++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 356777777888888888888888887753 2235566777777777785 888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhc-cCChHH
Q 048321 390 YSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTH-TGFLEK 464 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~-~g~~~~ 464 (641)
|.+.|++++|...|+++.. .+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8899999999999988765 46788999999999999999999999999986 554 4578888888888 666577
Q ss_pred H-----HHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC--ChHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcC------
Q 048321 465 G-----WAISIIQYDDKGISYNPELDHYSCMADLLGRKG--KLKEALDFVQSMPIKS-DAGIWGTLLCACKIHL------ 530 (641)
Q Consensus 465 a-----~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g------ 530 (641)
| +..|+.+++..+ -+...|..+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l~P----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP----HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 588888886332 34678888889999888 6899999998875444 4567788888887764
Q ss_pred ---CHHHHHHHHHHh-HccCCCCCccHHHHHHHHHhc
Q 048321 531 ---NIEIGEYVAYCL-FKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 531 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 563 (641)
..++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999999888888887776654
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2.4e-13 Score=135.22 Aligned_cols=225 Identities=8% Similarity=-0.033 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhHHHHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS-IGDARELFYALPE---KIVVSWTTMIAGC 421 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 421 (641)
..|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666667788899999999999999876 5678899999999999997 9999999998875 4678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc-cCC
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR-KGK 499 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~ 499 (641)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+.+++..+ -+...|+.+..+|.+ .|.
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999986 565 45888888899999999999999999997433 457889999999999 666
Q ss_pred hHHH-----HHHHHhCC-CCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC------
Q 048321 500 LKEA-----LDFVQSMP-IKS-DAGIWGTLLCACKIHL--NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG------ 564 (641)
Q Consensus 500 ~~~A-----~~~~~~~~-~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 564 (641)
.++| ++.|++.. ..| +...|..+...+...| ++++|+..++++ +.+|+++..+..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6888 47777765 444 6779999999998888 689999999998 999999999999999999985
Q ss_pred --C-chHHHHHHHHH-Hh
Q 048321 565 --R-WDGVANIRTMM-KR 578 (641)
Q Consensus 565 --~-~~eA~~~~~~m-~~ 578 (641)
+ +++|.++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 3 58999999988 44
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=5.1e-13 Score=125.90 Aligned_cols=204 Identities=14% Similarity=0.005 Sum_probs=136.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 310 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
...|..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3456666666777777777777777665542 2233344445555
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHH
Q 048321 390 YSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a 465 (641)
|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 24456666667777777777777777777663334543 3566666677778888888
Q ss_pred HHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 048321 466 WAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLF 543 (641)
Q Consensus 466 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (641)
...|+.+.+..+ .+...+..++..|.+.|++++|...++++. .+.+...+..+...+...|+.++|...++++.
T Consensus 161 ~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 161 KEYFEKSLRLNR----NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888887775332 346677778888888888888888888764 33456677778888888999999999999999
Q ss_pred ccCCCCCccH
Q 048321 544 KLEPHSAAPY 553 (641)
Q Consensus 544 ~~~p~~~~~~ 553 (641)
++.|+++...
T Consensus 237 ~~~p~~~~~~ 246 (252)
T 2ho1_A 237 RLYPGSLEYQ 246 (252)
T ss_dssp HHCTTSHHHH
T ss_pred HHCCCCHHHH
Confidence 9988865443
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1e-12 Score=134.86 Aligned_cols=369 Identities=11% Similarity=0.009 Sum_probs=185.4
Q ss_pred HHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh---hHHHHHHhcccCCCCCchhHHHHHHHHhcCC-
Q 048321 148 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL---KMAELVFCGIEERLRTVVSWNSMVAGCTYGD- 223 (641)
Q Consensus 148 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 223 (641)
...+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+ .++..+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--TSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--CCHHHHHHHHHHHHhCCC
Confidence 344455566667777776666655 233344455555666666 778888877776 36666666666555554
Q ss_pred ----CchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---
Q 048321 224 ----KFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL---VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG--- 293 (641)
Q Consensus 224 ----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--- 293 (641)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......| ++.....|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 5678888888887765422 444444444433332 23444444444444 3455666667777666
Q ss_pred -CHHHHHHHHhcCCCCCcchHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc----CchHHHH
Q 048321 294 -DIDSARVLFDGICDRTRVSWTAMISGYAQKG---DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQS----GALELGK 365 (641)
Q Consensus 294 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----~~~~~a~ 365 (641)
..+.+..+++.....++.++..|...|...| +.++|+..|++..+.|. ++...+..+...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 3444455555555555567777777777777 66777777776666552 3333333333333332 3555555
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCC
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAG-C--ALNGEFVEALDLFHQLMELDL 442 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~ 442 (641)
.+++... .| +...+..+... + ...+++++|++.|++..+.|
T Consensus 238 ~~~~~aa-~g----------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 238 ALLEKIA-PG----------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHHHG-GG----------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHc-CC----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 5555544 21 23333333333 2 23556666666666666544
Q ss_pred CCChhhHHHHHHHHhccC-----ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCC
Q 048321 443 RPNRVTFLAVLQACTHTG-----FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIK 513 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 513 (641)
+......+...|. .| ++++|...|+... . -+...+..|..+|.. ..++++|...|++....
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~-----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--G-----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--T-----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--C-----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 3334444444444 33 6666666666554 1 234455555555544 23667777777665544
Q ss_pred CChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh--cCCchHHHHHHHHH
Q 048321 514 SDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL--GGRWDGVANIRTMM 576 (641)
Q Consensus 514 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~eA~~~~~~m 576 (641)
.++.....|...|.. ..|.++|...++++.+..+. .....+..+... .++.++|.++.++-
T Consensus 352 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 352 GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444555555555543 34777777777777776543 333344444322 33455666655543
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=6.5e-13 Score=118.45 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
+...|..+...|...|++++|++.|++..+. .|+. .++..+..++...|++++|...+.......+ .+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT----TSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----hhHHHHH
Confidence 4567888888999999999999999999886 5654 4777888889999999999999998885433 4566777
Q ss_pred HHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCc
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRW 566 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (641)
.+...+...+++++|.+.+.+.. .+.+...+..+...+...|++++|+..++++++++|+++..|..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 88888899999999999988866 4446778888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 048321 567 DGVANIRTMMKRNQ 580 (641)
Q Consensus 567 ~eA~~~~~~m~~~~ 580 (641)
++|.+.+++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887653
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=8.1e-13 Score=121.89 Aligned_cols=201 Identities=11% Similarity=-0.070 Sum_probs=136.2
Q ss_pred HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc-CC
Q 048321 351 MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALN-GE 426 (641)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~ 426 (641)
+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.. .+..+|..+...+... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333344444444444444444332 22344555556666666666666666665432 3456677777778888 88
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHH
Q 048321 427 FVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALD 505 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 505 (641)
+++|+..++++.+.+..|+. ..+..+...+...|++++|...|+.+.+..+ .+...+..++.++.+.|++++|..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP----QFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888773334443 4667777788888888888888888875432 346778888888888889998888
Q ss_pred HHHhCC--CC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 506 FVQSMP--IK-SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 506 ~~~~~~--~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
.++++. .+ .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888865 33 4566777777777889999999999999998899876555443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=3e-12 Score=122.06 Aligned_cols=227 Identities=12% Similarity=-0.056 Sum_probs=158.4
Q ss_pred hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCcc----hHHHHH
Q 048321 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD--RTRV----SWTAMI 317 (641)
Q Consensus 244 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 317 (641)
...+......+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|++... ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667788889999999999999999875 45566888999999999999999999987733 2322 388999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALI-DMYSKCGSI 396 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 396 (641)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998863 2345688888999999999999999999988764 45667777777 4444 3466
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCCh------hhHHHHHHHHhccCChH
Q 048321 397 GDARELFYALPE---KIVVSWTTMIAGCALNGE---FVEALDLFHQLMELD-LRPNR------VTFLAVLQACTHTGFLE 463 (641)
Q Consensus 397 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~~~~~~g~~~ 463 (641)
++|.+.|+++.+ .+...|..+...+...|+ +++|+..|+++.+.. -.|+. .++..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 666666665543 234455555555555555 555666655555421 11321 23334444444555555
Q ss_pred HHHHHHHHHHh
Q 048321 464 KGWAISIIQYD 474 (641)
Q Consensus 464 ~a~~~~~~~~~ 474 (641)
+|...|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=9.6e-11 Score=124.35 Aligned_cols=420 Identities=10% Similarity=0.046 Sum_probs=268.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHHcC-CCChhHH
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKH---LSLLKSVHSFGIHIGV-DADVSVC 179 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 179 (641)
.|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.+. .+.+.++|+..+.... +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47778888888888888888888888888775 34445556667777667777 8888888888877541 3677777
Q ss_pred HHHHHHhHcCCCh--------hHHHHHHhcccC-----CCCCchhHHHHHHHHhc---------CCCchHHHHHHHHHHH
Q 048321 180 NTWISSYAKCDDL--------KMAELVFCGIEE-----RLRTVVSWNSMVAGCTY---------GDKFDDSLNFYRHMMY 237 (641)
Q Consensus 180 ~~ll~~~~~~g~~--------~~A~~~~~~~~~-----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 237 (641)
...+....+.++. +...++|+.... .+.+...|...+.-... .++.+.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777655555443 233466665332 12234567776654432 2335566677777664
Q ss_pred CCCCCCh---hhHH---HHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-------
Q 048321 238 NGFRLDV---TTVV---SLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG------- 304 (641)
Q Consensus 238 ~g~~p~~---~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------- 304 (641)
+ |.. .+|. ..-... +...+..++.+. ..+++.|...+..
T Consensus 223 --i-P~~~~~~~w~~Y~~fe~~~----~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 223 --Q-PMDCLESMWQRYTQWEQDV----NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp --S-CCSSHHHHHHHHHHHHHHH----CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTT
T ss_pred --C-ccHHHHHHHHHHHHHHHhc----CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHh
Confidence 2 221 1111 111111 000011111110 0122223332221
Q ss_pred CCC--------------C--C------cchHHHHHHHHHhCC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048321 305 ICD--------------R--T------RVSWTAMISGYAQKG-------DLDEALRLFFAMEAAGELPDLVTVLSMISGC 355 (641)
Q Consensus 305 ~~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 355 (641)
+.. | + ...|...+.---.++ ..+.+..+|++.+.. ..-+...|.....-+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 110 0 0 123555554433332 123456678777765 233556666666666
Q ss_pred cCcCchHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------C------------
Q 048321 356 GQSGALELGK-WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-------------K------------ 409 (641)
Q Consensus 356 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------ 409 (641)
...|+.+.|. .+++..+... +.+...+..++...-+.|+++.|.++|+.+.. |
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 6778888886 9999998743 56777888899999999999999999998764 2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHhhhCCCCCCChhHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMEL-DLRPNRVTFLAVLQACTH-TGFLEKGWAISIIQYDDKGISYNPELDHY 487 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~p~~~~~ 487 (641)
....|...+....+.|..+.|..+|.++++. + .+....|......-.+ .++.+.|+.+|+...+.++ -+...|
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p----~~~~~w 507 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA----TDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT----TCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC----CchHHH
Confidence 1236888888888899999999999999885 2 1122333322222223 3569999999999998766 566678
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
...++.....|+.+.|..+|++.. ..| ....|...+..-..+|+.+.+..+.+++.+..|+++ ....+++=|
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 899999999999999999999976 333 345899999999999999999999999999999864 333344433
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=8.2e-13 Score=121.15 Aligned_cols=191 Identities=17% Similarity=0.030 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 391 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 391 (641)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33444444444444444444444443321 1122333333344444444444444444444432 223344444444444
Q ss_pred hc-----------CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 392 KC-----------GSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 392 ~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
+. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 666666666665543 244566666666777777777777777777654 45556666666777
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
..|++++|...|+.+.+..+ .+...+..+..++.+.|++++|+..+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAP----KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777665322 34556666667777777777777666553
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=3.2e-12 Score=122.08 Aligned_cols=224 Identities=11% Similarity=-0.074 Sum_probs=136.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555666666666666666655542 122333333333443 444444444444444432
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc--
Q 048321 385 ALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH-- 458 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 458 (641)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34455555555555 666666666666666643 44455555556666
Q ss_pred --cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----
Q 048321 459 --TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI---- 528 (641)
Q Consensus 459 --~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 528 (641)
.+++++|...|+...+ . .+...+..+...|.+ .+++++|+..+++.....++..+..+...+..
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~-----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-L-----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHh-c-----CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 6667777777766663 1 134455556666665 67777777777665533345666677777777
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~m~~~~ 580 (641)
.+++++|+..++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7788888888888877765 5677778888887 888888888887776654
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=8.2e-13 Score=126.18 Aligned_cols=218 Identities=13% Similarity=0.014 Sum_probs=181.0
Q ss_pred hcCcCchHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 048321 355 CGQSGALELGKWFDNYACSGGL---KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 428 (641)
....|++++|...++.+.+... +.+..++..+...|...|++++|...|+++.+ .+..+|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4556899999999999998642 22467888899999999999999999998764 46789999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHH
Q 048321 429 EALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFV 507 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 507 (641)
+|+..|+++.+. .| +..++..+...+...|++++|...|+.+.+. .|+..........+...|++++|...+
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999986 44 4568888889999999999999999999963 355555555556667789999999999
Q ss_pred HhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 508 QSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 508 ~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
++.. .+++...| .++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 168 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7755 44444444 4677778888999999999999988774 36789999999999999999999999988653
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=3.9e-12 Score=130.60 Aligned_cols=340 Identities=11% Similarity=-0.022 Sum_probs=228.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048321 214 SMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL---VQGRLVHSHGIHYGFDLDVSVINTLISMYS 290 (641)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 290 (641)
.+...+.+.|++++|+++|++..+.|. ...+..+...+...|+. ++|...+....+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 466778889999999999999988763 33444455555667777 8999999988854 5555666777555
Q ss_pred hcC-----CHHHHHHHHhcCCC-CCcchHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC--
Q 048321 291 KCG-----DIDSARVLFDGICD-RTRVSWTAMISGYAQKGDLD---EALRLFFAMEAAGELPDLVTVLSMISGCGQSG-- 359 (641)
Q Consensus 291 ~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-- 359 (641)
..+ +.++|...|++... .+...+..|...|...+..+ ++.+.+......|. | .....+...+...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~--~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-P--EAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-T--THHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-H--HHHHHHHHHHHcCCCc
Confidence 555 78899999987733 35558888888888766544 45555555555554 2 23334444454445
Q ss_pred --chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CChhHHHHHHHHHHHc----CCh
Q 048321 360 --ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE---KIVVSWTTMIAGCALN----GEF 427 (641)
Q Consensus 360 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~ 427 (641)
+.+.+..++.... ..++..+..|..+|.+.| +.++|.+.|+...+ ++...+..+...|... +++
T Consensus 158 ~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 3444444444433 233448888999999999 99999999987754 3444446677777554 689
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHH-H--hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC-----C
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQA-C--THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG-----K 499 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~ 499 (641)
++|+..|++.. .| +...+..+... + ...+++++|...|+...+ . .+...+..|..+|. .| +
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~-----g~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-A-----DQPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHH-HCSSSCCC
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-C-----CCHHHHHHHHHHHH-cCCCCCCC
Confidence 99999999987 33 34455555554 3 568999999999999883 3 36677778888887 55 9
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHH
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVAN 571 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~ 571 (641)
+++|+..|++.. +.++..+..|...|.. ..|.++|...++++.+. .++.....|+.+|.. ..+.++|..
T Consensus 303 ~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999999999988 6677788888877765 34999999999999874 568899999999985 558999999
Q ss_pred HHHHHHhCCC
Q 048321 572 IRTMMKRNQV 581 (641)
Q Consensus 572 ~~~~m~~~~~ 581 (641)
.++...+.|.
T Consensus 380 ~~~~A~~~g~ 389 (452)
T 3e4b_A 380 FSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 9999988774
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=2.4e-13 Score=138.49 Aligned_cols=260 Identities=10% Similarity=-0.014 Sum_probs=169.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCchHHHHHHHHHHHHc----C-CCCchhHHHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----G-LKDNVMVCNAL 386 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 386 (641)
+...+...|++++|+..|++..+.... +. ..+..+...+...|++++|...++...+. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444555555555555555443211 11 23444444445555555555555544431 1 01223455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 048321 387 IDMYSKCGSIGDARELFYALPEK---------IVVSWTTMIAGCALNGE-----------------FVEALDLFHQLMEL 440 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 440 (641)
...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66777777777777776655431 23467777777888888 88888887776542
Q ss_pred ----CCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 441 ----DLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 441 ----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+-.|.. .++..+...+...|++++|...++...+... -.++ ...+..++.+|...|++++|...+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR--EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 111222 3666777788889999999999888875332 1112 2367888889999999999999988764
Q ss_pred -C---CC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 512 -I---KS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 512 -~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
. .. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 14577788888999999999999999998875543 3478889999999999999999998876
Q ss_pred h
Q 048321 578 R 578 (641)
Q Consensus 578 ~ 578 (641)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 5
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=2e-13 Score=141.10 Aligned_cols=208 Identities=8% Similarity=-0.024 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI-GDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQ 436 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (641)
++.+...++...... +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34566677777777777777 777777776543 3567888888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHhcc---------CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc--------CC
Q 048321 437 LMELDLRPNRVTFLAVLQACTHT---------GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK--------GK 499 (641)
Q Consensus 437 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~ 499 (641)
..+. .|+...+..+...+... |++++|...|+++.+..+ .+...|..+..+|... |+
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV----LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhhccccch
Confidence 9886 57777888888888888 999999999999986433 4578889999999988 99
Q ss_pred hHHHHHHHHhCC-CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 500 LKEALDFVQSMP-IKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 500 ~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
+++|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999976 345 677999999999999999999999999999999999999999999999999999987543
Q ss_pred H
Q 048321 575 M 575 (641)
Q Consensus 575 ~ 575 (641)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=3.8e-12 Score=121.55 Aligned_cols=230 Identities=15% Similarity=0.030 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICDR-TRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVLSM 351 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 351 (641)
.++..+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35678888999999999999999999887444 55688889999999 999999999999998875 56667777
Q ss_pred HHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 048321 352 ISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEF 427 (641)
Q Consensus 352 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 427 (641)
...+.. .++.++|...++...+.+ +...+..+..+|.... ...+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCH
Confidence 777766 788888888887777654 3445555555554400 004455
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCC
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTH----TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGK 499 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 499 (641)
++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. .+...+..+..+|.+ .++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL------KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCcc
Confidence 55555555555433 23334444444444 55566666665555531 123445555555555 666
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCC
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 548 (641)
+++|+..+++.....+...+..+...+.. .++.++|...++++.+++|+
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666654422234455566666666 67777777777777777665
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=5.1e-13 Score=135.66 Aligned_cols=270 Identities=11% Similarity=0.026 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC----cchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-H
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGIC---DRT----RVSWTAMISGYAQKGDLDEALRLFFAMEAA----GELPD-L 345 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~ 345 (641)
....+..+...+...|++++|...|++.. +.+ ...|..+...|...|++++|...|++.... +..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34445555666666666666666666541 122 134555666666666666666666655431 11111 2
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGL-KDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALN 424 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 424 (641)
..+..+...+...|++++|...+....+... .++.. ....++..+...|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------GEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc---------------------------chHHHHHHHHHHHHHc
Confidence 2334444444555555555555544443100 00000 0012344444444444
Q ss_pred CC--------------------hHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCC
Q 048321 425 GE--------------------FVEALDLFHQLMEL----DLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS 479 (641)
Q Consensus 425 g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (641)
|+ +++|+..+++.... +-.|. ..++..+...+...|++++|...++...+...
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 218 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-- 218 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH--
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--
Confidence 44 45555444443321 10111 11344444455555555555555555443221
Q ss_pred CCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 480 YNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 480 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
-.++ ...+..++.+|...|++++|...+++.. ..++ ..++..+...+...|++++|...+++++++.+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 1111 1244455555555555555555555432 0011 22444455555555555555555555554433
Q ss_pred CC------CccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 548 HS------AAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 548 ~~------~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
.. ...+..++.+|...|++++|.+.+++.
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 234455555555555555555555544
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=6.9e-13 Score=130.63 Aligned_cols=260 Identities=12% Similarity=0.020 Sum_probs=172.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCchHHHHHHHHHHHHc----CCC-CchhHHHHHH
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPD----LVTVLSMISGCGQSGALELGKWFDNYACSG----GLK-DNVMVCNALI 387 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li 387 (641)
...+...|++++|...|++..+.... + ...+..+...+...|+++.|...++...+. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555555555555555543211 1 133444444555555555555555544331 111 1244566667
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 048321 388 DMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGE--------------------FVEALDLFHQLM 438 (641)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 438 (641)
..|...|++++|...|++..+ .+ ..++..+...+...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766543 12 2367777777888888 888888887765
Q ss_pred Hc----CCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 439 EL----DLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 439 ~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
.. +-.|. ..++..+...+...|++++|...++...+... -.++ ...+..++..+.+.|++++|...+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 11121 23666777788889999999999988875332 1122 33678888899999999999999887
Q ss_pred CC----CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------CccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 510 MP----IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 510 ~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.. ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 64 1112 4467778888999999999999999998876543 33788899999999999999999998
Q ss_pred HHhC
Q 048321 576 MKRN 579 (641)
Q Consensus 576 m~~~ 579 (641)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=7.7e-13 Score=134.29 Aligned_cols=295 Identities=13% Similarity=0.009 Sum_probs=205.6
Q ss_pred CChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----
Q 048321 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLD----VSVINTLISMYSKCGDIDSARVLFDGICD-----R---- 308 (641)
Q Consensus 242 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~---- 308 (641)
+....+......+...|++++|...++.+++.+ +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445556677788889999999999999999885 233 35788899999999999999999886511 1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcCcCc--------------------hHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE-LPD----LVTVLSMISGCGQSGA--------------------LEL 363 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~--------------------~~~ 363 (641)
...++..+...|...|++++|...+++...... .++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 234688888999999999999999998865311 011 2244445555555555 444
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048321 364 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK--IVVSWTTMIAGCALNGEFVEALDLFHQLMELD 441 (641)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (641)
|...+....+ ++.....+ ...+|..+...+...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4444333322 22222111 12466777777888888888888888776531
Q ss_pred C-CCC----hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 442 L-RPN----RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 442 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
. .++ ..++..+...+...|++++|...++...+... -.++ ...+..++..|.+.|++++|...+++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0 122 12667777788888899999888888775332 1112 4567788888999999999999888764
Q ss_pred ---CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC------CCccHHHHHHHHHhcCCch
Q 048321 512 ---IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH------SAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 512 ---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~ 567 (641)
..++ ..++..+...+...|++++|...+++++++.+. ....+..++.+|...|+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 447778888899999999999999999877432 3456788899999888764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=4.8e-12 Score=112.72 Aligned_cols=166 Identities=8% Similarity=-0.043 Sum_probs=142.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVL 453 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 453 (641)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+. ..+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567888899999999999999999998765 46788999999999999999999999999886 4544 4666677
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 531 (641)
..+...++++.+...+.......+ .+...+..+..+|.+.|++++|++.|++.. .+.+..+|..+...+...|+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 788899999999999999986433 457788999999999999999999999876 44467789999999999999
Q ss_pred HHHHHHHHHHhHccCCCC
Q 048321 532 IEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~ 549 (641)
+++|+..++++++++|++
T Consensus 157 ~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 999999999999999975
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=4.8e-11 Score=115.96 Aligned_cols=220 Identities=10% Similarity=-0.022 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-------CcCch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 327 DEALRLFFAMEAAGELPDLVTVLSMISGCG-------QSGAL-------ELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 327 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
++|..+|++..... +-+...|..+...+. ..|+. ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 233444544444443 34664 7888888888873224456788888999999
Q ss_pred cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH-hccCChHHHHH
Q 048321 393 CGSIGDARELFYALPE--K-IVV-SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC-THTGFLEKGWA 467 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~ 467 (641)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988765 3 333 79999999999999999999999998753 22333444333332 23699999999
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCC----CC--ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 468 ISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPI----KS--DAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 468 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
+|+.+.+..+ .+...|..++..+.+.|++++|..+|++... +| ....|..++......|+.+.|..++++
T Consensus 191 ~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHhCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987655 4678889999999999999999999998752 44 355888889888999999999999999
Q ss_pred hHccCCCCCcc
Q 048321 542 LFKLEPHSAAP 552 (641)
Q Consensus 542 ~~~~~p~~~~~ 552 (641)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999986544
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=4.1e-12 Score=136.54 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=142.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHY 487 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~ 487 (641)
+..+|+.|...|.+.|++++|++.|++..+. .|+. .++..+..+|.+.|++++|.+.|+++.+. .|+ ...|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~~a~ 80 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 3467888899999999999999999999886 6665 48888888999999999999999999863 344 7889
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
..++.+|.+.|++++|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 999999999999999999999876 444 567999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHh
Q 048321 566 WDGVANIRTMMKR 578 (641)
Q Consensus 566 ~~eA~~~~~~m~~ 578 (641)
|++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=6.2e-10 Score=118.18 Aligned_cols=435 Identities=9% Similarity=-0.046 Sum_probs=277.3
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC---hhHHHH
Q 048321 121 FLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD---LKMAEL 197 (641)
Q Consensus 121 ~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~ 197 (641)
...+.+..|++..... +-|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555566665554 457788999999888888899999999988876 45567788888888888888 899999
Q ss_pred HHhcccCCC---CCchhHHHHHHHHhcCCCc----hH----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHhcC-------
Q 048321 198 VFCGIEERL---RTVVSWNSMVAGCTYGDKF----DD----SLNFYRHMMY-NGF-RLDV-TTVVSLLSSFVC------- 256 (641)
Q Consensus 198 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------- 256 (641)
+|++..... |++..|...+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 998888774 7888888877655554443 22 3356665443 355 4443 344444433221
Q ss_pred --CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 048321 257 --PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFF 334 (641)
Q Consensus 257 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (641)
.++++.+..+|..++......-..+|......-...+. ..+.+++.+ ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 12345566666666532111111222222111111000 001111110 0113344445554
Q ss_pred HHHH--cCCC---------------C-----CH---HHHHHHHHHhcCcC-------chHHHHHHHHHHHHcCCCCchhH
Q 048321 335 AMEA--AGEL---------------P-----DL---VTVLSMISGCGQSG-------ALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 335 ~m~~--~~~~---------------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
++.. .++. | +. ..|...+.---..+ ..+.+..+|++.+... +.+..+
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 4322 1110 1 11 12333332221111 1234556788777753 557888
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------CCC----
Q 048321 383 CNALIDMYSKCGSIGDAR-ELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL---------RPN---- 445 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~---- 445 (641)
|...+..+...|+.++|. ++|++... .+...|-..+...-+.|+++.|.++|+++..... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 888899888999999996 99987654 3566788888888999999999999999986410 142
Q ss_pred --------hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC-ChHHHHHHHHhCC--CCC
Q 048321 446 --------RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG-KLKEALDFVQSMP--IKS 514 (641)
Q Consensus 446 --------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p 514 (641)
...|...+....+.|.++.|+.+|..+.+..+ .+....|...+.+-.+.| +.+.|..+|+... .+.
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 22567777777788999999999999986412 123344544444444554 5899999999876 455
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|...+......|+.+.|..+|++++...|+ ....|....+.-...|..+.+.++.+.+.+.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888888888899999999999999998873 3456777788888899999999999988653
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=5.9e-12 Score=128.14 Aligned_cols=266 Identities=14% Similarity=0.011 Sum_probs=164.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCcchHHH
Q 048321 249 SLLSSFVCPEALVQGRLVHSHGIHYGFDLDV----SVINTLISMYSKCGDIDSARVLFDGICD---------RTRVSWTA 315 (641)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 315 (641)
.+...+...|++++|...++.+++.+. .+. .++..+...|...|++++|...|++... ....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344455556666666666666665531 122 3455555555556666666555544311 01223444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcC
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG-LKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 394 (641)
+...|...|++++|...|++...... +.+ .+....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHcC
Confidence 44555555555555555554432100 001 0112334555566666666
Q ss_pred C-----------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC--
Q 048321 395 S-----------------IGDARELFYALPE-----K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-RPN-- 445 (641)
Q Consensus 395 ~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-- 445 (641)
+ +++|.+.+++... . ...+|..+...|...|++++|+..|++..+... .++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 6666666555432 1 234677788888888999999998888876311 112
Q ss_pred --hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC----ChhHHHHHHHHhhccCChHHHHHHHHhCC-C---CCC
Q 048321 446 --RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP----ELDHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD 515 (641)
Q Consensus 446 --~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~ 515 (641)
..++..+...+...|++++|...++.+.+... -.. ....+..+..+|.+.|++++|...+++.. . .++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV--ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12677778888999999999999988875332 111 14677888899999999999999998864 1 111
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 516 ----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 516 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..++..+...+...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888999999999999999999988764
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.2e-11 Score=114.48 Aligned_cols=187 Identities=11% Similarity=-0.045 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQ 454 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 454 (641)
+..+......|...|++++|...|+...+ ++...|..+..++...|++++|+..|++..+. .|+.. .+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444444445555555555555544322 23334444444444555555555555554443 33322 3444444
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCCh-------hHHHHHHHHhhccCChHHHHHHHHhCC-CCCC---hhHHHHHH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPEL-------DHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLL 523 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~ll 523 (641)
.+...|++++|...|+...+..+ .+. ..|..+...+.+.|++++|++.|++.. ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 44455555555555554443222 112 234444444444444444444444433 2332 22333333
Q ss_pred HHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 524 CACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+.. .+...++++..+.+.++..| ........|.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33322 22233333344433322222 122223334448899998887763
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=1.5e-11 Score=109.29 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..+ .+...+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~ 86 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP----DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHH
Confidence 333444444444444444444443321 11223344444444445555555555555443211 2344445555555
Q ss_pred hccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 495 GRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
...|++++|.+.++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555543 2334556666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHh
Q 048321 573 RTMMKR 578 (641)
Q Consensus 573 ~~~m~~ 578 (641)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=3.3e-11 Score=117.15 Aligned_cols=212 Identities=6% Similarity=-0.040 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHH
Q 048321 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYS-------KCGSI-------GDARELFYALPE---K-IVVSWTTMIAGCAL 423 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 423 (641)
+.|..+|+++++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 567788888888776 35886 899999998654 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh-ccCCh
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG-RKGKL 500 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~ 500 (641)
.|++++|..+|+++.+. .|+.. .|..+...+.+.|++++|..+|+++.+..+ ++...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----CCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999984 67643 788888899999999999999999985332 34555554444422 37999
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc---CCC-CCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 501 KEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL---EPH-SAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 501 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
++|..+|++.. .+.+...|..++..+...|+.++|+.+++++++. .|+ ....|..++..+.+.|++++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999976 3446779999999999999999999999999995 553 56688899999999999999999999
Q ss_pred HHHhCC
Q 048321 575 MMKRNQ 580 (641)
Q Consensus 575 ~m~~~~ 580 (641)
.+.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=1.3e-11 Score=127.65 Aligned_cols=177 Identities=7% Similarity=-0.072 Sum_probs=155.9
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHH
Q 048321 396 IGDARELFYALPE---KIVVSWTTMIAGCALNGEF-VEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 396 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++++...++.... .+...|..+...+...|++ ++|++.|++..+. .|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666655433 4678899999999999999 9999999999986 565 5588889999999999999999999
Q ss_pred HHHhhhCCCCCCChhHHHHHHHHhhcc---------CChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc--------CC
Q 048321 471 IQYDDKGISYNPELDHYSCMADLLGRK---------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH--------LN 531 (641)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~--------g~ 531 (641)
.+.+ +.|+...+..+..+|... |++++|++.+++.. .+.+...|..+..++... |+
T Consensus 162 ~al~-----~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT-----HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh-----hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9985 557888899999999999 99999999999976 444677999999999988 99
Q ss_pred HHHHHHHHHHhHccCC---CCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 532 IEIGEYVAYCLFKLEP---HSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+++|+..++++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999 89999999999999999999999999998764
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.2e-11 Score=121.61 Aligned_cols=266 Identities=13% Similarity=0.018 Sum_probs=160.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCcchHHH
Q 048321 249 SLLSSFVCPEALVQGRLVHSHGIHYGFDLD----VSVINTLISMYSKCGDIDSARVLFDGICD---------RTRVSWTA 315 (641)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 315 (641)
.....+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++... ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33444556666666666666666653 112 24455555666666666666665554310 01223444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGE-LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
+...|...|++++|...+++..+... .++. .....++..+...|...|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHHcC
Confidence 45555555555555555554433100 0110 001224445555555555
Q ss_pred C--------------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CC
Q 048321 395 S--------------------IGDARELFYALPE-----K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-RP 444 (641)
Q Consensus 395 ~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 444 (641)
+ +++|...+++... . ...++..+...+...|++++|+..+++..+... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 5 5666555554322 1 134677777888888888888888888765310 11
Q ss_pred C----hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-C---
Q 048321 445 N----RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP-I--- 512 (641)
Q Consensus 445 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--- 512 (641)
+ ..++..+...+...|++++|...++...+... -.++ ...+..+...|...|++++|...+++.. .
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 12667777788889999999999888775332 1122 5567788889999999999999988764 1
Q ss_pred CCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 513 KSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 513 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.++ ..++..+...+...|++++|...+++++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 111 346778888999999999999999999988765
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=1.3e-11 Score=124.23 Aligned_cols=223 Identities=9% Similarity=-0.076 Sum_probs=132.4
Q ss_pred hcCcCchHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhHHHHHHH
Q 048321 355 CGQSGALELGKWFDNYACSG----GLKD-NVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----IVVSWTTMIA 419 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 419 (641)
+...|++++|...+....+. +-++ ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44455555555555555542 1011 234555566666666666666666555432 1 1245666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-C-CCChhHHHHHHH
Q 048321 420 GCALNGEFVEALDLFHQLMELDL-RPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-Y-NPELDHYSCMAD 492 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~p~~~~~~~l~~ 492 (641)
.|...|++++|+..|++..+... .++. .++..+...|...|++++|...|+...+..... . .....++..++.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777777664210 1111 256666667777777777777777776421100 1 122455677777
Q ss_pred HhhccCChHHHHHHHHhCC------CCCC-hhHHHHHHHHHHHcCC---HHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 493 LLGRKGKLKEALDFVQSMP------IKSD-AGIWGTLLCACKIHLN---IEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
+|.+.|++++|...+++.. ..|. ...+..+...+...|+ .++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 7777788777777777654 1121 1224455556666677 66666666665 3333445567778888888
Q ss_pred cCCchHHHHHHHHHHh
Q 048321 563 GGRWDGVANIRTMMKR 578 (641)
Q Consensus 563 ~g~~~eA~~~~~~m~~ 578 (641)
.|++++|.+.+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888877654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=127.44 Aligned_cols=237 Identities=14% Similarity=0.105 Sum_probs=116.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc------CC-
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAA-------GELPDLVTVLSMISGCGQSGALELGKWFDNYACSG------GL- 376 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 376 (641)
.+|..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...++.+.+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888888888888888888887652 11222334555555566666666666666655542 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCh-hhH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL------DLRPNR-VTF 449 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~ 449 (641)
+....++..+...|.. .|++++|+..|+++.+. +-.|+. ..+
T Consensus 108 ~~~~~~~~~l~~~~~~-------------------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGK-------------------------------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHT-------------------------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------------------------------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1123344444444444 44555555444444432 111211 234
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCC---CCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC----------CCC-
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGIS---YNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP----------IKS- 514 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p- 514 (641)
..+...+...|++++|..+|+.+.+..... ..|. ...+..++.+|.+.|++++|...++++. ..+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 444445555555555555555554321000 0111 2344555555555566666555555532 011
Q ss_pred ChhHH------HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 DAGIW------GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
....| ..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 11222233344455555566666666677777777888888888888888887776654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=4.6e-12 Score=123.29 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=148.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---CcchHHHHHHHHHhCCChhHHHHHHHHHHHc------
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICD--------R---TRVSWTAMISGYAQKGDLDEALRLFFAMEAA------ 339 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 339 (641)
.+..++..+...|...|++++|..+|+++.. . ...++..+...|...|++++|...|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3457888999999999999999999987733 1 2346888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHhcCcCchHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 048321 340 GELP-DLVTVLSMISGCGQSGALELGKWFDNYACSG------GLKD-NVMVCNALIDMYSKCGSIGDARELFYALPEKIV 411 (641)
Q Consensus 340 ~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 411 (641)
+..| ....+..+...+...|++++|...++.+.+. +..| ...++..+...|...|+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------------- 168 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK---------------- 168 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC----------------
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC----------------
Confidence 2223 3456778888899999999999999988763 1111 22334444444444454
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCC----CC
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMEL------DLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGI----SY 480 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~ 480 (641)
+++|+++|+++.+. +-.|+. .++..+...+...|++++|...++.+.+.... ..
T Consensus 169 ---------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 169 ---------------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444444444432 111221 24444555555556666666555555532100 00
Q ss_pred CC-------ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 481 NP-------ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 481 ~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+ ....+..+...+...+.+.+|...+.... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11222333344555666677777777765 334 4557888999999999999999999999998775
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.4e-10 Score=102.94 Aligned_cols=168 Identities=10% Similarity=-0.039 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC 456 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 456 (641)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999999876 366788999999999999999999999999862 33456788888899
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 534 (641)
...|++++|.+.++.+.+..+ .+...+..++..+.+.|++++|.+.++++. .+.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986543 567888999999999999999999999976 44467789999999999999999
Q ss_pred HHHHHHHhHccCCCCCcc
Q 048321 535 GEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~ 552 (641)
|...+++++++.|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999999987544
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=4.6e-11 Score=120.21 Aligned_cols=232 Identities=10% Similarity=0.018 Sum_probs=166.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhcCcCchHHHHHHHHHHHHc--CC----CCchhHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAG-ELPD----LVTVLSMISGCGQSGALELGKWFDNYACSG--GL----KDNVMVCN 384 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 384 (641)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445666777777777777765420 0122 245566666677777777777777766652 11 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hhHH
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNR-VTFL 450 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~ 450 (641)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888899999999888877653 11 247888999999999999999999998872 222443 4788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCC---hHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGK---LKEALDFVQSMPIKSD-AGIWGTLLCA 525 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~ 525 (641)
.+...+...|++++|...++...+.....-.|. ...+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899999999999999998875332000122 2335778889999999 9999999999875444 3367778889
Q ss_pred HHHcCCHHHHHHHHHHhHccCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p 547 (641)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=8.5e-11 Score=108.67 Aligned_cols=205 Identities=10% Similarity=-0.032 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIA 419 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 419 (641)
.|+..+......+...|++++|...++..++...+++...+..+..+|...|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999977437777777799999999999999999998765 35678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCh--------hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC---hhHHH
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNR--------VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE---LDHYS 488 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~---~~~~~ 488 (641)
.|...|++++|+..|++..+. .|+. ..+..+...+...|++++|...|+.+.+ +.|+ ...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~ 157 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD-----VTSKKWKTDALY 157 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SSCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-----cCCCcccHHHHH
Confidence 999999999999999999986 4553 3466677788899999999999999985 4465 56788
Q ss_pred HHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
.+..+|...|+. .++++. ...+...+.... ....+.+++|+..++++++++|+++.....+..+..
T Consensus 158 ~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 158 SLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888888766653 223322 122333343332 345677999999999999999999887777776654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=1.8e-09 Score=108.01 Aligned_cols=257 Identities=12% Similarity=-0.051 Sum_probs=152.5
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCcCchHHHHHHHHHHHHcC--C-CC--chhHHHHHHHHH
Q 048321 320 YAQKGDLDEALRLFFAMEAAGELPDLV----TVLSMISGCGQSGALELGKWFDNYACSGG--L-KD--NVMVCNALIDMY 390 (641)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~li~~~ 390 (641)
+...|++++|...+++........+.. .+..+...+...|+++.|...+....... . .+ ...++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334455555555555444432111111 22233334444555555555555444310 0 11 112344556666
Q ss_pred HhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C-C-hhhHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPE-------K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLR--P-N-RVTFLAVLQA 455 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~-~~t~~~ll~~ 455 (641)
...|++++|...+++... + ...++..+...+...|++++|...+++....... | . ..++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 777777777776665432 1 1234556677778888888888888887764221 1 1 1355666667
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHHH-----HHHHHhhccCChHHHHHHHHhCC-CCCC-----hhHHHHHHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHYS-----CMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLC 524 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~ 524 (641)
+...|++++|...++....... -......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHh--ccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 7888888888888888775432 111111222 23345778899999998888875 2221 224566777
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCC------CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHS------AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888899999999988887654321 13666778889999999999988877654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=8.9e-11 Score=117.84 Aligned_cols=221 Identities=10% Similarity=-0.031 Sum_probs=136.8
Q ss_pred hcCcCchHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhHHHHHHH
Q 048321 355 CGQSGALELGKWFDNYACSGG--LK---DNVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----IVVSWTTMIA 419 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 419 (641)
+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445666666666666665421 11 1234556666777777777776666655432 1 1346677777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHhccCChHHHHHHHHHHHhhh---CCCCCCChhHHHHHH
Q 048321 420 GCALNGEFVEALDLFHQLMELDL-RPN----RVTFLAVLQACTHTGFLEKGWAISIIQYDDK---GISYNPELDHYSCMA 491 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~p~~~~~~~l~ 491 (641)
.|...|++++|++.|++..+..- .++ ..++..+...|...|++++|...|+...+.. + .+.....+..++
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~la 268 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVLFGLS 268 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHHHHHH
Confidence 77788888888887777665210 111 1256666677778888888888887777411 1 112355677777
Q ss_pred HHhhccCChHHHHHHHHhCC----C--CCC-hhHHHHHHHHHHHcCC---HHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP----I--KSD-AGIWGTLLCACKIHLN---IEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
.+|.+.|++++|...+++.. . .|. ...+..+...+...++ .++|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 88888888888888877753 1 122 2234444445556666 66666666652 222333456677888888
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
..|++++|.+.+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888877643
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=8.6e-10 Score=104.22 Aligned_cols=203 Identities=10% Similarity=-0.043 Sum_probs=121.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hh
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--K-I---VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR----VT 448 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 448 (641)
+...+..+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++..+. .|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344444555555666666666666665543 2 2 345555555566666666666666666554 2321 13
Q ss_pred HHHHHHHHhc--------cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHH
Q 048321 449 FLAVLQACTH--------TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWG 520 (641)
Q Consensus 449 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 520 (641)
+..+..++.. .|++++|...|+.+.+..+ .+.....++.......+.+ ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~a~~~~~~~~~~~---------------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP----NHELVDDATQKIRELRAKL---------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT----TCTTHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc----CchhHHHHHHHHHHHHHHH---------------HHHHH
Confidence 3344444444 5566666666666554332 1111111111110000000 01235
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCC---ccHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCccCCce
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSA---APYVEMANKYALG----------GRWDGVANIRTMMKRNQVKKFPGQ 587 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~eA~~~~~~m~~~~~~~~~~~ 587 (641)
.+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+...
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------ 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------ 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC------
Confidence 667888999999999999999999999854 4788999999977 999999999998876421
Q ss_pred eEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHH
Q 048321 588 SLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSRE 625 (641)
Q Consensus 588 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 625 (641)
.+|........+..+..++.+
T Consensus 227 -----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHH
Confidence 255556677777777776654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=6.3e-09 Score=104.27 Aligned_cols=228 Identities=8% Similarity=0.006 Sum_probs=164.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhcCcCchHHHHHHHHHHHHc--CC---C-CchhHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAG-ELPD----LVTVLSMISGCGQSGALELGKWFDNYACSG--GL---K-DNVMVCN 384 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~ 384 (641)
....+...|++++|+..|++..... -.++ ..++..+...+...|+++.|...+....+. .. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445567777888888777776431 1122 235566666777778888887777776652 11 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCC-hhhH
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLME-----LDLRPN-RVTF 449 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~~t~ 449 (641)
.+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+ . .|+ ..++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHH
Confidence 788888889999988888876543 12 24778888899999999999999999887 3 333 4477
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCC---hHHHHHHHHhCCCCCCh-hHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGK---LKEALDFVQSMPIKSDA-GIWGTLLC 524 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~ 524 (641)
..+...+.+.|++++|...++...+.....-.|. ...+..+...+...|+ +++|+..+++....|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7888899999999999999999886443111122 3456777788888888 99999999997644433 35667888
Q ss_pred HHHHcCCHHHHHHHHHHhHcc
Q 048321 525 ACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~ 545 (641)
.+...|++++|...+++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999988764
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=2e-10 Score=109.70 Aligned_cols=198 Identities=14% Similarity=0.135 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CC
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE-----------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL------DL 442 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 442 (641)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|+++... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555555555555555554331 12345666666666667777777666666543 11
Q ss_pred CCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhh----CCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-----
Q 048321 443 RPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDK----GISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP----- 511 (641)
Q Consensus 443 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 511 (641)
.|+ ..++..+...+...|++++|...|+.+.+.. +. -.| ....+..++.+|.+.|++++|..+++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 2355666667777777777777777766431 10 022 24456667777777777777777776643
Q ss_pred -----CCCC-hhHHHHHHHHHHHcC------CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 512 -----IKSD-AGIWGTLLCACKIHL------NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 512 -----~~p~-~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+. ...|..+.......+ .+..+...++......|..+..+..++.+|...|++++|.+++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 223333333333222 233333334433344455566788889999999999999998887664
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=3e-10 Score=122.12 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=137.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVL 453 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 453 (641)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+. ..+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3467788888899999999999999988764 45778999999999999999999999999886 5664 4888888
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 531 (641)
.++...|++++|.+.|+++.+..+ -+...|..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP----AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 899999999999999999986332 347789999999999999999999999876 455 56688999999999999
Q ss_pred HHHHHHHHHHhHccCC
Q 048321 532 IEIGEYVAYCLFKLEP 547 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p 547 (641)
+++|++.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999998887654
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=1.1e-10 Score=99.74 Aligned_cols=140 Identities=6% Similarity=-0.092 Sum_probs=101.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
.+...|++++|+..+++.... .|+. ..+..+...|...|++++|.+.|+...+..+ -+...|..+..+|.+.|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE----RDPKAHRFLGLLYELEE 79 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 344456777777777776543 3433 3555666777778888888888887775332 34677777888888888
Q ss_pred ChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHH-HHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 499 KLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYV-AYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
++++|+..|++.. ..| ++.+|..+...+...|+.++|.+. ++++++++|+++..|...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887765 344 566788888888888888766554 588999999999999988888888875
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=4.6e-09 Score=96.64 Aligned_cols=179 Identities=9% Similarity=-0.041 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----hHHH
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPE--KI----VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV----TFLA 451 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ 451 (641)
.+..+...+.+.|++++|...|+.+.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455556666666666666666543 21 134555666666666666666666666654 34332 2222
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh-hHH----------
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIW---------- 519 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~---------- 519 (641)
+..++...|. .. ...|..+...+...|++++|+..|+++. ..|+. ..+
T Consensus 84 ~g~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 84 RGLTNMALDD-----SA---------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHC----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhh-----hh---------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 2223322100 00 0000000111112344444444444433 22221 111
Q ss_pred -------HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048321 520 -------GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA---APYVEMANKYALGGRWDGVANIRTMMKRNQVK 582 (641)
Q Consensus 520 -------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~ 582 (641)
..+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 3455678889999999999999999999875 57899999999999999999999998887643
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=9.6e-09 Score=96.68 Aligned_cols=174 Identities=9% Similarity=-0.027 Sum_probs=100.2
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 399 ARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 399 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455554432 33444455666666667777777777666554321222 3555555666677777777777776653
Q ss_pred hhCCCCCC-----ChhHHHHHHHH--hhc--cCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 475 DKGISYNP-----ELDHYSCMADL--LGR--KGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 475 ~~~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
..| +-.+...++.+ ... .+++++|..+|+++. ..|+..+-..++.++.+.|++++|+..++.+.+
T Consensus 165 -----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 -----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp -----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred -----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 335 23333333333 222 236777777777765 334422333344466677777777777776666
Q ss_pred c----------CCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 545 L----------EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 545 ~----------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
. +|+++.++..++.+....|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 5 36667777666666666676 677777777654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.5e-09 Score=104.29 Aligned_cols=228 Identities=10% Similarity=-0.014 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 048321 328 EALRLFFAMEAAGELPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYA 405 (641)
Q Consensus 328 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (641)
+|.+++.+..+. .++....| .++ .. .+++++|...+... ...|...|++++|...|.+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466666666554 22221112 222 22 22478887777665 3467788999988888876
Q ss_pred CCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHhcc-CChHHHHHHHH
Q 048321 406 LPE-------K--IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL---RPN--RVTFLAVLQACTHT-GFLEKGWAISI 470 (641)
Q Consensus 406 ~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~-g~~~~a~~~~~ 470 (641)
... + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+...|... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 543 1 146888999999999999999999998876311 111 23777888899996 99999999999
Q ss_pred HHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh--------HHHHHHHHHHHcCCHHHHHH
Q 048321 471 IQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG--------IWGTLLCACKIHLNIEIGEY 537 (641)
Q Consensus 471 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--------~~~~ll~~~~~~g~~~~a~~ 537 (641)
+..+..+ -..+ ..++..++..|.+.|++++|+..|++.. ..|+.. .|..+...+...|+++.|+.
T Consensus 143 ~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 143 LAGEWYA--QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH--hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9986432 1111 3568889999999999999999999865 333221 46777778889999999999
Q ss_pred HHHHhHccCCCCCcc-----HHHHHHHHH--hcCCchHHHHHHHHHH
Q 048321 538 VAYCLFKLEPHSAAP-----YVEMANKYA--LGGRWDGVANIRTMMK 577 (641)
Q Consensus 538 ~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~eA~~~~~~m~ 577 (641)
.++++++++|+.... +..++..|. ..+++++|.+.++.+.
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999999986553 334556664 5677888888875543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.9e-09 Score=89.71 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 34555555555566666666665555432 122334444444555555555555555555432
Q ss_pred HhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 493 LLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 65 -------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 65 -------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp -------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -------------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 1223344555555555666666666666666666666566666666666666666666666
Q ss_pred HHHHHh
Q 048321 573 RTMMKR 578 (641)
Q Consensus 573 ~~~m~~ 578 (641)
++++.+
T Consensus 126 ~~~~~~ 131 (136)
T 2fo7_A 126 YQKALE 131 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 665544
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=2.9e-10 Score=97.07 Aligned_cols=121 Identities=12% Similarity=-0.032 Sum_probs=101.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHc
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH 529 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~ 529 (641)
...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|++.|++.. ..| ++.+|..+...+...
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~-----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP-----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC-----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3456677899999999988774 2233 4456678999999999999999999976 444 677999999999999
Q ss_pred CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH-HHHHHh
Q 048321 530 LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI-RTMMKR 578 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~-~~~m~~ 578 (641)
|++++|+..++++++++|+++..|..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 566654
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=3.8e-08 Score=98.36 Aligned_cols=192 Identities=14% Similarity=-0.015 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-------CC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--C--CHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGIC-------DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEL--P--DLV 346 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~ 346 (641)
+..+...+...|++++|...+++.. .+ ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445555555666666655554431 11 1123444555566666666666666665542211 1 123
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc-hhHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCC-------hhH
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDN-VMVCN-----ALIDMYSKCGSIGDARELFYALPEKI-------VVS 413 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 413 (641)
++..+...+...|++++|...++......-.++ ...+. ..+..+...|++++|...++.....+ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 444455555556666666666665554211111 01111 22333556667777766666655421 113
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCChh-hHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445556666666666666666665432 1111111 33333445555566666665555554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=2e-09 Score=101.63 Aligned_cols=204 Identities=10% Similarity=-0.059 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----ChhH
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN---VMVCNALIDMYSKCGSIGDARELFYALPE--K----IVVS 413 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 413 (641)
.+...+......+...|++++|...++.+++.. +.+ ..++..+..+|.+.|++++|...|+...+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667777778889999999999999999864 223 67888899999999999999999998765 2 1346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh
Q 048321 414 WTTMIAGCAL--------NGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL 484 (641)
Q Consensus 414 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~ 484 (641)
+..+..++.. .|++++|+..|+++.+. .|+.. ....+ ..+...... ..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-------~~ 148 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-------LA 148 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-------HH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-------HH
Confidence 7778888888 99999999999999986 56654 22221 111111110 11
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHc----------CCHHHHHHHHHHhHccCCCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIH----------LNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 549 (641)
..+..++..|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|+..++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 235566788888899999998888865 3333 33666677777655 89999999999999999987
Q ss_pred Cc---cHHHHHHHHHhcCCchHHH
Q 048321 550 AA---PYVEMANKYALGGRWDGVA 570 (641)
Q Consensus 550 ~~---~~~~l~~~~~~~g~~~eA~ 570 (641)
+. ....+..++.+.|+++++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 53 4556666666666655443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.4e-09 Score=102.91 Aligned_cols=217 Identities=11% Similarity=-0.037 Sum_probs=131.4
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCcCchHHHHHHH
Q 048321 294 DIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA----GELPD-LVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
++++|...|+.. ...|...|++++|...|.+.... |-.++ ..+|..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766543 66677788888888877766542 11111 234444555555555555555554
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC-
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALN-GEFVEALDLFHQLMELDLR-PN- 445 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~- 445 (641)
+..++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 444331 1111222111 23567777778875 8888888888887763110 01
Q ss_pred ---hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-----hHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh
Q 048321 446 ---RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL-----DHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA 516 (641)
Q Consensus 446 ---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 516 (641)
..++..+...+...|++++|...|+.+.+..+ -.+.. ..|..++.++...|++++|+..+++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM--GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 23567777788888888888888888885333 11221 156677788888888888888888865 44432
Q ss_pred h------HHHHHHHHHH--HcCCHHHHHHHHHHhHccCCCC
Q 048321 517 G------IWGTLLCACK--IHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 517 ~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
. .+..++.++. ..+++++|+..++++..++|.+
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2 2344555554 3467888888888888888864
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=6.6e-09 Score=86.39 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998754 467788999999999999999999999999863 3345577778888889
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
.|++++|.+.++.+.+..+ .+...+..++..+.+.|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999999988885322 34555556666666666666666665553
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=8.1e-10 Score=119.41 Aligned_cols=147 Identities=15% Similarity=-0.086 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC 489 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 489 (641)
...|..+...+...|++++|+..|+++.+. .|+. ..+..+..++...|++++|...|+++.+..+ .+...|..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~ 506 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----GELAPKLA 506 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCSHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHH
Confidence 344444455555555555555555555543 2322 2444444445555555555555555543211 22444445
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 490 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555555 55554443 222 33445555555555555555555555555555555555555555554433
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=3.8e-09 Score=101.16 Aligned_cols=173 Identities=11% Similarity=-0.029 Sum_probs=135.7
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhh
Q 048321 398 DARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDK 476 (641)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 476 (641)
.....+......+...+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 3334444444445566777788888999999999999999886 5655 4777778889999999999999998874
Q ss_pred CCCCCCChhHHHHH-HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC--Cc
Q 048321 477 GISYNPELDHYSCM-ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS--AA 551 (641)
Q Consensus 477 ~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 551 (641)
..|+....... ...+.+.|+.++|+..+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 33554433333 234667788888888888865 44467789999999999999999999999999999987 78
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.+..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988776543
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=2.4e-08 Score=93.98 Aligned_cols=238 Identities=10% Similarity=-0.049 Sum_probs=157.5
Q ss_pred hcCCHHHHHHHHhcCCCCCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHH
Q 048321 291 KCGDIDSARVLFDGICDRTRV-SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDN 369 (641)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 369 (641)
-.|.+..++.-...+.+.+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 346666666655555332222 222244667777766531 11234433333333332 222 556666
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 370 YACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 370 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
.....+ .++..+...+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 666554 44555556788888999999999999988743 24567778888999999999999999999875 67
Q ss_pred -----ChhhHHHHHHH--HhccC--ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCC---
Q 048321 445 -----NRVTFLAVLQA--CTHTG--FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPI--- 512 (641)
Q Consensus 445 -----~~~t~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 512 (641)
+..+...+..+ ....| ++.+|..+|+++.+.+ |+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 35566666655 33334 8999999999987532 5433334444488899999999999876431
Q ss_pred --------CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 513 --------KS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 513 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.| |+.+...++......|+ .|.++++++.+..|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 55566677766677787 8899999999999997543
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=1.2e-09 Score=92.66 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=89.0
Q ss_pred CCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 480 YNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 480 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
+.|+ ...+..+...+.+.|++++|+..|++.. .+.++..|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3444 5677888889999999999999999976 444678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+.+|...|++++|.+.+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=2.9e-09 Score=87.55 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 480 YNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 480 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 3455666777777777777777777754 333566777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 048321 557 ANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=7.9e-09 Score=98.51 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCC
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE-----------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL------DLR 443 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 443 (641)
.++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555555555555554332 12345666667777777777777777777653 112
Q ss_pred CC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhC----CCCCCC-hhHHHHHHHHhhc------cCChHHHHHHHHhCC
Q 048321 444 PN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKG----ISYNPE-LDHYSCMADLLGR------KGKLKEALDFVQSMP 511 (641)
Q Consensus 444 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~------~g~~~~A~~~~~~~~ 511 (641)
|+ ..++..+...+...|++++|...++.+.+... ....+. ...|..+...+.. ...+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 22 23566667777788888888888877764311 001122 2233333333332 233455555555554
Q ss_pred -CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 512 -IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 512 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
..| ...++..+...+...|++++|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3447788888999999999999999998875
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=4.2e-09 Score=92.69 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=60.9
Q ss_pred HHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC--CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 502 EALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS--AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 502 ~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+|+..+++.. ..| +...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3455555543 234 56788888888999999999999999999999875 4588999999999999999999887654
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=1.1e-06 Score=90.65 Aligned_cols=371 Identities=10% Similarity=-0.039 Sum_probs=203.5
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC-hhHHH
Q 048321 119 MG-FLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD-LKMAE 196 (641)
Q Consensus 119 ~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~ 196 (641)
.| +++.|..+|+.+... .|. ++.+.+.++|+..+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366777777777652 343 7788888888887773 4677788777776666553 34455
Q ss_pred HHHhcccC----CCCCchhHHHHHHHHhc----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHH
Q 048321 197 LVFCGIEE----RLRTVVSWNSMVAGCTY----GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHS 268 (641)
Q Consensus 197 ~~~~~~~~----~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 268 (641)
.+|+.... .+.+...|...+.-+.. +++.+.+..+|++.+.. |.. .+..+-..| .
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y-------------~ 131 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDF-------------E 131 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHH-------------H
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHH-------------H
Confidence 56655443 13455667777665442 34566777777777762 211 111111111 1
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCC-------hhHHHHHHHHHH
Q 048321 269 HGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGD-------LDEALRLFFAME 337 (641)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~ 337 (641)
.+.... +..+...++.-+. +.+..|..+++.+ ...+...|...+.--..++. .+.+..+|+++.
T Consensus 132 ~fE~~~---~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 132 NFELEL---NKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHHHHH---CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---ccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 111100 0111111111110 1222223222222 11133355555444322211 234567777777
Q ss_pred HcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC---------
Q 048321 338 AAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA-RELFYALP--------- 407 (641)
Q Consensus 338 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~--------- 407 (641)
... +.+...|...+.-+...|+.+.|..++++.+.. +.+...+.. |....+.++. ..+.+...
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 643 334555665666666778888888888888877 444433332 2221111111 11111110
Q ss_pred -C--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCChHHHHHHHHHHHhhhCCCCCCC
Q 048321 408 -E--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQA-CTHTGFLEKGWAISIIQYDDKGISYNPE 483 (641)
Q Consensus 408 -~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~p~ 483 (641)
. .....|-..+..+.+.+..+.|..+|+++ ... .++...|...... +...++.+.|+.+|+...+..+ -+
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~----~~ 353 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP----DS 353 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT----TC
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC----CC
Confidence 0 11245777777777778889999999988 321 1222333321111 1123368999999999887654 23
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
...+...++...+.|+.+.|..+|+.+. .....|...+..-..+|+.+.+..++++..+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556777888888899999999999974 3566888888888888998888888877763
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.5e-08 Score=91.85 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
+.+...|...|++++|+..|++..+. .|+. ..+..+...+...|++++|...|+++.+..+ .+...|..+..+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~ 131 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA----DNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 33888899999999999999999986 5654 5788888899999999999999999996433 457788888888
Q ss_pred hhccCC--hHHHHHHHHhCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 494 LGRKGK--LKEALDFVQSMPIKSDA--GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 494 ~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|...|. .+.+...++... .|++ ..+..+..++...|++++|+..+++++++.|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 876654 455666776655 3333 34555566677789999999999999999997
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=3.4e-09 Score=90.03 Aligned_cols=97 Identities=9% Similarity=-0.054 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
+...+..+...+.+.|++++|+..|++.. .+.+...|..+..+|...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35667778888999999999999999876 4447778999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.9e-08 Score=108.61 Aligned_cols=190 Identities=12% Similarity=-0.013 Sum_probs=149.9
Q ss_pred cCcCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 048321 356 GQSGALELGKWFDNYAC--------SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALN 424 (641)
Q Consensus 356 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 424 (641)
...|++++|...++... +.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 45677888899999999999999999998875 4678999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 425 GEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
|++++|++.|++..+. .|+. ..+..+..++...|++++ .+.|+++.+..+ .+...|..+..+|.+.|++++|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND----GVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC----chHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999986 5654 578888889999999999 999999986433 4577899999999999999999
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHHcCC-----HHHHHHHHHHhHccCCCCCccH
Q 048321 504 LDFVQSMP-IKSD-AGIWGTLLCACKIHLN-----IEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 504 ~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
++.|+++. ..|+ ...|..+..++...++ .+...++.+.+..+.++++...
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99999987 6665 5577777777766554 3444555555555655554443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=8.1e-09 Score=109.62 Aligned_cols=159 Identities=9% Similarity=-0.018 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHH
Q 048321 393 CGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998876 35678999999999999999999999999986 565 45788888899999999999999
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc---CCHHHHHHHHHHhH
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---LNIEIGEYVAYCLF 543 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~ 543 (641)
|++..+..+ .+...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+.++|...+++++
T Consensus 80 ~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAAP----EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999996433 457889999999999999999999999976 344677888999999999 99999999999999
Q ss_pred ccCCCCCccHHHHH
Q 048321 544 KLEPHSAAPYVEMA 557 (641)
Q Consensus 544 ~~~p~~~~~~~~l~ 557 (641)
+.+|++...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99999888888777
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=6.7e-09 Score=85.36 Aligned_cols=115 Identities=10% Similarity=-0.075 Sum_probs=92.8
Q ss_pred CCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhH
Q 048321 442 LRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGI 518 (641)
Q Consensus 442 ~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 518 (641)
+.|+.. .+......+.+.|++++|.+.|++..+..+ .+...|..+..+|.+.|++++|++.+++.. .+.+...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP----ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 455543 566677788888888888888888885433 457788888888888899999988888865 3446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
|..+..++...|++++|+..++++++++|+++.++..+++++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999988888777653
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=3e-08 Score=95.99 Aligned_cols=220 Identities=9% Similarity=-0.029 Sum_probs=150.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048321 323 KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL 402 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (641)
.|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4566777777776654311 10 011146666666666543 3456777888887777
Q ss_pred HhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHhccCChHHHHHH
Q 048321 403 FYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLMELDL---RPN--RVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 403 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766543 11 34788888899999999999999998775311 122 2367777788888 999999999
Q ss_pred HHHHHhhhCCCCCC----ChhHHHHHHHHhhccCChHHHHHHHHhCC-C---CCC----hhHHHHHHHHHHHcCCHHHHH
Q 048321 469 SIIQYDDKGISYNP----ELDHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD----AGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 469 ~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~ 536 (641)
|++..+... -.. ....+..+..+|.+.|++++|+..|++.. . .++ ...+..+...+...|++++|.
T Consensus 138 ~~~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 138 YQQAAAVFE--NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH--hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999885432 111 14678888999999999999999999865 1 111 225566667777889999999
Q ss_pred HHHHHhHccCCCCCcc-----HHHHHHHHHhcCCchHHHHH
Q 048321 537 YVAYCLFKLEPHSAAP-----YVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~eA~~~ 572 (641)
..+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99976544 33445545 56776666553
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=6e-08 Score=88.07 Aligned_cols=161 Identities=6% Similarity=-0.108 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC----ChHHHHHHHHHHHhhhCCCCCCCh
Q 048321 409 KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTG----FLEKGWAISIIQYDDKGISYNPEL 484 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~p~~ 484 (641)
.++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|...|+...+ . .+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~-----g~~ 85 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A-----GSK 85 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T-----TCH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C-----CCH
Confidence 356677777777778888888888888888764 45566666666776 6 88999999998873 2 356
Q ss_pred hHHHHHHHHhhc----cCChHHHHHHHHhCC-CCCC---hhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCcc
Q 048321 485 DHYSCMADLLGR----KGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 485 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
..+..|..+|.. .+++++|+++|++.. ..|. +..+..|...|.. .++.++|...++++.++ |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 677778888877 889999999999877 3332 6788888888888 78999999999999998 667889
Q ss_pred HHHHHHHHHhc-C-----CchHHHHHHHHHHhCC
Q 048321 553 YVEMANKYALG-G-----RWDGVANIRTMMKRNQ 580 (641)
Q Consensus 553 ~~~l~~~~~~~-g-----~~~eA~~~~~~m~~~~ 580 (641)
+..|+.+|... | ++++|.+.+++..+.|
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999864 3 8999999999988765
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=2.8e-08 Score=105.50 Aligned_cols=147 Identities=12% Similarity=-0.106 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 048321 358 SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367778888887777654 44567777888888888888888888887654 35667888888888888888888888
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc---CChHHHHHHHHhC
Q 048321 435 HQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK---GKLKEALDFVQSM 510 (641)
Q Consensus 435 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 510 (641)
++..+. .|+ ...+..+..++...|++++|.+.|+++.+..+ .+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888875 444 44777777788888888888888888875332 3466777788888888 8888888888776
Q ss_pred C
Q 048321 511 P 511 (641)
Q Consensus 511 ~ 511 (641)
.
T Consensus 155 l 155 (568)
T 2vsy_A 155 V 155 (568)
T ss_dssp H
T ss_pred H
Confidence 5
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=2e-08 Score=90.96 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=118.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHH----------------HHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLA----------------VLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
.....+...|++++|+..|++..+. .|+.. .+.. +..++...|++++|...|+...+..+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP- 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence 3445566778888888888888775 45543 4555 77789999999999999999996433
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHHhHccCCCCCccHH
Q 048321 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL--NIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 479 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
.+...+..+..+|...|++++|+..|++.. ..| +..+|..+...+...| +.+.+...++++....|. ...+.
T Consensus 86 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 86 ---NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp ---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 457889999999999999999999999976 444 6778888888876655 345566667776654443 23466
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++.++...|++++|...+++..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7788999999999999999988764
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=2.6e-07 Score=87.90 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCC-Chh
Q 048321 381 MVCNALIDMYSKCG--SIGDARELFYALPE---KIVVSWTTMIAGC----ALN---GEFVEALDLFHQLMELDLRP-NRV 447 (641)
Q Consensus 381 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~ 447 (641)
.+|+.--..+...| +++++++.++.+.. ++..+|+.--..+ ... +++++++.+++++.+. .| |..
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~ 145 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHH 145 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHH
Confidence 33444444444444 55555555554433 2334444433333 333 5667777777777765 33 334
Q ss_pred hHHHHHHHHhccCChH--HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC------hHHHHHHHHhCC--CCCChh
Q 048321 448 TFLAVLQACTHTGFLE--KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK------LKEALDFVQSMP--IKSDAG 517 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~ 517 (641)
++..-...+.+.|.++ ++++.++.+.+... -+...|+.-..++.+.|+ ++++++.++++. .+-|..
T Consensus 146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~----~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL----KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 5555555555566665 77777777765433 445556555555555555 677777776655 334666
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHhHccC---CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLN-IEIGEYVAYCLFKLE---PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.|+.+...+.+.|+ .+......+++++++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777777766665 333555666666665 66667777777777777788888887777764
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=9e-08 Score=87.90 Aligned_cols=186 Identities=12% Similarity=-0.086 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHH
Q 048321 345 LVTVLSMISGCGQSGALELGKWFDNYACSGGLK--DNVMVCNALIDMYSKCGSIGDARELFYALPE--KI-V---VSWTT 416 (641)
Q Consensus 345 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 416 (641)
...+..+...+...|++++|...++.+++.... .....+..+..+|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999985422 1245778889999999999999999998764 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 417 MIAGCAL------------------NGEFVEALDLFHQLMELDLRPNRVT-FLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 417 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
+..++.. .|++++|+..|+++.+. .|+... ...... . ..+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555554 34556666666665553 344331 111100 0 0000000
Q ss_pred CCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 478 ISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 478 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
......++..|.+.|++++|+..|+++. ..|+. ..+..+..++...|+.++|+..++++....|++.++
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112346678899999999999999876 33432 468888899999999999999999999999987665
Q ss_pred H
Q 048321 553 Y 553 (641)
Q Consensus 553 ~ 553 (641)
.
T Consensus 221 ~ 221 (225)
T 2yhc_A 221 H 221 (225)
T ss_dssp T
T ss_pred c
Confidence 3
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.6e-08 Score=97.87 Aligned_cols=199 Identities=7% Similarity=-0.116 Sum_probs=150.2
Q ss_pred CcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 048321 357 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQ 436 (641)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (641)
..|++++|..++++..+..- .. .+...++++.|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35788889998888776321 11 11115788888887665 45678889999999999998
Q ss_pred HHHcCC---CC-C-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 437 LMELDL---RP-N-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 437 m~~~g~---~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
..+... .+ . ..+|..+...|...|++++|...|++..+.....-.|. ..++..+..+|.+ |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 23778888899999999999999998875432001122 4578888999988 999999999988
Q ss_pred CC-CCC---C----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc------cHHHHHHHHHhcCCchHHHHHHHH
Q 048321 510 MP-IKS---D----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA------PYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 510 ~~-~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.. ..| + ..++..+...+...|++++|+..+++++++.|++.. .+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65 111 1 357888889999999999999999999998776542 667788899999999999999998
Q ss_pred HH
Q 048321 576 MK 577 (641)
Q Consensus 576 m~ 577 (641)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=1e-07 Score=86.58 Aligned_cols=128 Identities=10% Similarity=-0.060 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...|+...+..+ .+...+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----HLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHH
Confidence 4445556666677777777776654 456666666666677777777777777777664322 34556666666
Q ss_pred HhhccCChHHHHHHHHhCC-CCC-Ch----------------hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 493 LLGRKGKLKEALDFVQSMP-IKS-DA----------------GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+|.+.|++++|++.|++.. ..| +. ..|..+...+...|++++|...+++++++.|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 6666666666666666643 112 22 45556666666666666666666666666664
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=4.7e-08 Score=82.32 Aligned_cols=96 Identities=14% Similarity=-0.070 Sum_probs=84.1
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556677788889999999999998876 34467788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 048321 562 LGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~ 579 (641)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887754
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=6.9e-08 Score=84.77 Aligned_cols=156 Identities=8% Similarity=-0.049 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-H-H
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-A-C 456 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~-~ 456 (641)
....+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +..+.. . +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 345566778888999999999998876 46678888888999999999999999988765 44333 222222 1 1
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC---hhHHHHHHHHHHHcCCH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKIHLNI 532 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~~g~~ 532 (641)
...+...+|...++...+..+ .+...+..+..++.+.|++++|...|+++. ..|+ ...+..+...+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP----DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 222233346788888875332 347888889999999999999999998865 4554 45788888899999999
Q ss_pred HHHHHHHHHhHc
Q 048321 533 EIGEYVAYCLFK 544 (641)
Q Consensus 533 ~~a~~~~~~~~~ 544 (641)
++|...+++++.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887764
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.3e-08 Score=81.26 Aligned_cols=119 Identities=8% Similarity=-0.027 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..++..+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556777788889999999999998865 44467789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHH
Q 048321 562 LGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALH 622 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 622 (641)
..|++++|.+.+++..+.... ....|....+...+..+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999999888764210 01236677777766665544
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=5.3e-07 Score=86.49 Aligned_cols=161 Identities=9% Similarity=-0.032 Sum_probs=120.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCChh----hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDL-RPNRV----TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDH 486 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~ 486 (641)
..+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+.+.+... -.++ ...
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~--~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL--TGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC--CCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 346677888999999999999887421 12211 223455567777899999999999885322 1233 336
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-----C---CCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------Cc
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-----I---KSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AA 551 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~ 551 (641)
++.++..|...|++++|+..++++. . .+. ..++..+...|...|++++|+..+++++++.+.. +.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8889999999999999999888865 1 111 2377888899999999999999999998876433 45
Q ss_pred cHHHHHHHHHhcCC-chHHHHHHHHHHh
Q 048321 552 PYVEMANKYALGGR-WDGVANIRTMMKR 578 (641)
Q Consensus 552 ~~~~l~~~~~~~g~-~~eA~~~~~~m~~ 578 (641)
.|..+|.+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78899999999995 6999998887653
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=2.2e-07 Score=89.28 Aligned_cols=165 Identities=8% Similarity=-0.037 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hh
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LD 485 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~ 485 (641)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888999998888888775321111 1233344566778899999999888874322111122 44
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC----CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC------CC
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH------SA 550 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 550 (641)
.|+.++..|...|++++|+..++++. ..|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999999988754 1222 257888889999999999999999999876532 14
Q ss_pred ccHHHHHHHHHhcCCchHH-HHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGV-ANIRTMMK 577 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA-~~~~~~m~ 577 (641)
..|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5688999999999999999 77677654
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=9.1e-08 Score=82.85 Aligned_cols=127 Identities=9% Similarity=-0.096 Sum_probs=92.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+...+..+ .+...+..++.++...|++++|+..+++.. .+.+...|..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 344455556666777777777776664322 346666677777777777777777777654 33456678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHH--HHHHhcCCchHHHHHHHHHHh
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA--NKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+...|++++|...+++++++.|+++..+..++ ..+...|++++|.+.++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998887775444 448888999999998877643
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=2.5e-07 Score=84.00 Aligned_cols=132 Identities=12% Similarity=-0.020 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF 461 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 461 (641)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345567777888888888888888877778888888888888888888888888888753 2234577777778888888
Q ss_pred hHHHHHHHHHHHhhhCCCCCC--------------ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh
Q 048321 462 LEKGWAISIIQYDDKGISYNP--------------ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA 516 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 516 (641)
+++|...|+.+.+..+ -.+ ....+..++.+|.+.|++++|.+.|++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLR--GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTT--TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCC--CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888875433 111 12667778888888888888888888765 45543
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=2.7e-08 Score=87.46 Aligned_cols=118 Identities=5% Similarity=-0.008 Sum_probs=72.6
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH-HHHcCCH--
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA-CKIHLNI-- 532 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~-~~~~g~~-- 532 (641)
..|++++|...++...+..+ .+...|..++..|...|++++|+..|++.. .+.+...|..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP----QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHCC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 44556666666666554322 345556666666666666666666666654 22345556666666 5566776
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777766654
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=3.8e-07 Score=87.11 Aligned_cols=159 Identities=8% Similarity=-0.043 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHH-HHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWT-TMIAGCA 422 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~ 422 (641)
..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+..... .....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344455555666677777777777776654 44566777777777778888888888877765 3332222 2222355
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
..++.++|+..|++.... .|+. ..+..+...+...|++++|...|..+.+..+ -..+...+..++.+|...|+.+
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL--TAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TGGGGHHHHHHHHHHHHHCTTC
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHcCCCC
Confidence 566677777777777765 4443 4666666677777777777777777775332 1122456666677777777776
Q ss_pred HHHHHHHh
Q 048321 502 EALDFVQS 509 (641)
Q Consensus 502 ~A~~~~~~ 509 (641)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66666654
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=1.2e-07 Score=77.27 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=82.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHH
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 524 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 524 (641)
..+..+...+...|++++|...|+.+.+..+ .+...+..++..+.+.|++++|..+++++. .+.+..+|..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3555555666667777777777776664322 345566667777777777777777777654 3345667788888
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888899999999999999999988888888888877654
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=9.8e-08 Score=79.03 Aligned_cols=114 Identities=9% Similarity=-0.086 Sum_probs=82.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+...+..+ .+...+..++.+|...|++++|+..+++.. .+.+...|..+...
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP----KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 555555566666666677666666664222 345566666677777777777777776654 33356678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
+...|++++|+..++++++++|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999888888888888887764
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=1e-07 Score=78.58 Aligned_cols=116 Identities=7% Similarity=-0.119 Sum_probs=87.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+.+....+ .+...+..++..+...|++++|++.+++.. .+.+...|..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455555566667777777777777664322 345666677777777777777777777654 33356678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
+...|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999998889999999999888763
No 129
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.3e-06 Score=80.37 Aligned_cols=228 Identities=8% Similarity=-0.069 Sum_probs=164.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCcC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc--
Q 048321 323 KGDLDEALRLFFAMEAAGELPDLV-TVLSMISGCGQSG--ALELGKWFDNYACSGGLKDNVMVCNALIDMY----SKC-- 393 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 393 (641)
....++|+.++..++.. .|+.. .++.--..+...+ +++++..+++.++..+ +-+..+|+---..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33445778887777764 34443 3444444455555 7888888888877765 44455555544444 444
Q ss_pred -CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC------
Q 048321 394 -GSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV--EALDLFHQLMELDLRPNRVTFLAVLQACTHTGF------ 461 (641)
Q Consensus 394 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 461 (641)
+++++++++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 788899998888765 56778888777788888888 9999999999874 2344566665556666665
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH-HHHHHHhCC-C----CCChhHHHHHHHHHHHcCCHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE-ALDFVQSMP-I----KSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
++++++.++.++...+ -|...|+.+..++.+.|+..+ +.++..+.. . ..++..+..++..+.+.|+.++|
T Consensus 202 ~~eEl~~~~~aI~~~p----~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP----QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCC----CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 8999999999986543 567888888889989888555 555776654 2 34677888999999999999999
Q ss_pred HHHHHHhHc-cCCCCCccHHHHHH
Q 048321 536 EYVAYCLFK-LEPHSAAPYVEMAN 558 (641)
Q Consensus 536 ~~~~~~~~~-~~p~~~~~~~~l~~ 558 (641)
.++++.+.+ .+|-+...|...+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999996 89987777766554
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=9.4e-06 Score=83.55 Aligned_cols=355 Identities=10% Similarity=0.006 Sum_probs=163.1
Q ss_pred chHHhHHHHHHhhccCcCCCChhHHHHHhhccC--CCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CCCC-ChhhH
Q 048321 70 LIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMA--VRDVASWNAMLVGFAQMGF-LENVLRLFYNMRLV-GIQA-DFVTV 144 (641)
Q Consensus 70 ~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~-g~~p-~~~t~ 144 (641)
+..++.+++..+..-+ .+.++.+..+|++.. .|++..|...+.-..+.+. .+....+|+..... |..| +...|
T Consensus 11 i~~aR~vyer~l~~~P--~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYM--SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp -CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred hHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3444444444433221 156777777777654 4688888888887776663 35566777776653 4333 44556
Q ss_pred HHHHHHHh----ccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHc-------------CCChhHHHHHHhcccCC--
Q 048321 145 MGLTQAAI----HAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAK-------------CDDLKMAELVFCGIEER-- 205 (641)
Q Consensus 145 ~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~-- 205 (641)
...++-+. ..++.+.+..+++.++......-..+|......-.. .+.+..|..+++.+...
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 66666544 235677888888888873211111222222111000 01122233333322221
Q ss_pred CCCchhHHHHHHHHhcCCC-------chHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc
Q 048321 206 LRTVVSWNSMVAGCTYGDK-------FDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLD 278 (641)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (641)
..+...|...+.--...+. .+.+..+|+++.... +.+...|...+.-+.+.|+++.|..+++..+.. +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 0123345444433222110 123455666665532 233444555555555666777777777777666 333
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHhcCC--C----------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 048321 279 VSVINTLISMYSKCGDIDSA-RVLFDGIC--D----------RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL 345 (641)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~--~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 345 (641)
...+.. |....+.++. .++.+... . .....|...+....+.++.+.|..+|.+. .. ...+.
T Consensus 246 ~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~ 319 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGP 319 (493)
T ss_dssp SHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCH
T ss_pred HHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCCh
Confidence 333222 2211111111 11111100 0 01123444444444455566666666655 21 11122
Q ss_pred HHHHH--HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 048321 346 VTVLS--MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL 423 (641)
Q Consensus 346 ~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 423 (641)
..|.. .+... ..++.+.|..+++...+.. +.++..+...++...+.|+.+.|..+|+.+. .....|...+..-..
T Consensus 320 ~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 320 HVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 22221 11111 1124566666666555532 2223344445555555666666666666653 234455555554455
Q ss_pred cCChHHHHHHHHHHH
Q 048321 424 NGEFVEALDLFHQLM 438 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~ 438 (641)
.|+.+.+..+++++.
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555554
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=3.6e-08 Score=93.95 Aligned_cols=192 Identities=10% Similarity=-0.069 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQ 454 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 454 (641)
+...+..+...+.+.|++++|...|+.... .+...|..+...|...|++++|+..+++..+. .|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344556666777777777777777776543 35667777778888888888888888887764 4544 46667777
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 534 (641)
++...|++++|...|+.+.+..+ -.+. .+...+....+..+... .........+++......+ ..+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p--~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK--EQRL--NFGDDIPSALRIAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH--HTTC--CCCSHHHHHHHHHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc--cchh--hHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 88888888888888887775322 1110 11111111111111111 1112222334444444433 223 3689999
Q ss_pred HHHHHHHhHccCCCCCccHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEMANKYALG-GRWDGVANIRTMMKRN 579 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~m~~~ 579 (641)
|.+.++++++++|++......+..++.+. +++++|.++++++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998877777788888877 7799999999887653
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=9e-08 Score=93.77 Aligned_cols=142 Identities=11% Similarity=-0.037 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++ . .-....|..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~----~-------~~~~~~~~nl 202 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA----Q-------ALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH----H-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH----H-------HHHHHHHHHH
Confidence 446666666677777777777777777665 3433210 00111110 0 0114677888
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999888876 344677899999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 048321 569 V-ANIRTMM 576 (641)
Q Consensus 569 A-~~~~~~m 576 (641)
| .++++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 9 4455555
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=1.5e-07 Score=81.48 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..+...+.+.|++++|++.|++.. .+.+...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555555555666666666555544 22244555556666666666666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666655544
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=6e-08 Score=82.23 Aligned_cols=108 Identities=6% Similarity=-0.098 Sum_probs=84.4
Q ss_pred CCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHH
Q 048321 443 RPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIW 519 (641)
Q Consensus 443 ~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 519 (641)
.|+.. .+..+...+...|++++|...|+.+....+ .+...|..+..+|.+.|++++|+..|++.. .+.++..|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH----YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 45433 556666677888888888888888875433 457777888888888888888888888865 33466788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
..+..++...|++++|+..+++++++.|+++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88889999999999999999999999998776543
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=8.3e-08 Score=78.13 Aligned_cols=95 Identities=11% Similarity=-0.073 Sum_probs=81.8
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
.+..++..+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567778888999999999998876 3446778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048321 564 GRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 564 g~~~eA~~~~~~m~~~~ 580 (641)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999998887643
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=4.2e-07 Score=73.16 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=63.4
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..++..+...|++++|...+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445556666666666666666666654 23355566666666677777777777777777777776677777777777
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777766654
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=4.2e-07 Score=79.70 Aligned_cols=126 Identities=9% Similarity=0.039 Sum_probs=101.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH-hhccCC
Q 048321 422 ALNGEFVEALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL-LGRKGK 499 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 499 (641)
...|++++|+..+++..+. .| +...+..+...|...|++++|...|+.+.+..+ .+...+..++.+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCC
Confidence 4568889999999998876 45 445788888899999999999999999986544 457778888888 778999
Q ss_pred h--HHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 500 L--KEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 500 ~--~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+ ++|+..++++. ..| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8 99999999876 334 567888899999999999999999999999999875543
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=1.4e-06 Score=78.88 Aligned_cols=172 Identities=6% Similarity=-0.099 Sum_probs=127.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 048321 364 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-KIVVSWTTMIAGCALNG----EFVEALDLFHQLM 438 (641)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 438 (641)
|...+....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445566666543 556667777777778888888888877655 356677777777766 6 8899999999987
Q ss_pred HcCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHhhhCCCCCCC---hhHHHHHHHHhhc----cCChHHHHHHH
Q 048321 439 ELDLRPNRVTFLAVLQACTH----TGFLEKGWAISIIQYDDKGISYNPE---LDHYSCMADLLGR----KGKLKEALDFV 507 (641)
Q Consensus 439 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 507 (641)
+.| +...+..+...|.. .+++++|...|+...+ .+ |. ...+..|..+|.. .+++++|+..|
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-ST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 754 45566677777766 7889999999998873 33 53 7788888888887 78899999999
Q ss_pred HhCC-CCCChhHHHHHHHHHHHc-C-----CHHHHHHHHHHhHccCC
Q 048321 508 QSMP-IKSDAGIWGTLLCACKIH-L-----NIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 508 ~~~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 547 (641)
++.. ..+++..+..|...|... | +.++|...++++.+..+
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9875 335666777777777643 3 89999999999988754
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=3.1e-07 Score=77.71 Aligned_cols=103 Identities=9% Similarity=-0.106 Sum_probs=72.9
Q ss_pred CCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHH
Q 048321 443 RPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIW 519 (641)
Q Consensus 443 ~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~ 519 (641)
.|+.. .+..+...+.+.|++++|...|+.+....+ .+...|..+..+|.+.|++++|+..|++.. . +.++..|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 44433 555555666777777777777777775322 346667777777777777777777777765 3 3356678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888888888888874
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=2.4e-07 Score=73.89 Aligned_cols=98 Identities=11% Similarity=0.014 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--CCccHHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--SAAPYVEMAN 558 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 558 (641)
+...+..++..+.+.|++++|...+++.. .+.+...|..+...+...|++++|+..++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556677777888888888888887765 3445677888888889999999999999999999998 8889999999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCC
Q 048321 559 KYALG-GRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 559 ~~~~~-g~~~eA~~~~~~m~~~~ 580 (641)
+|... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999998887654
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.5e-07 Score=87.36 Aligned_cols=181 Identities=9% Similarity=-0.080 Sum_probs=128.9
Q ss_pred hcCCHHHHHHHHhhCCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCChh--------------
Q 048321 392 KCGSIGDARELFYALPE--K-IVVSWTTM-------IAGCALNGEFVEALDLFHQLMELDLRPNRV-------------- 447 (641)
Q Consensus 392 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 447 (641)
..++.+.|.+.|.+... | ....|..+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777664 2 34567766 4555555566666665555544 333321
Q ss_pred --------hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCCh---
Q 048321 448 --------TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA--- 516 (641)
Q Consensus 448 --------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--- 516 (641)
....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|++
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 122345567788999999999988763 2355446666777888999999999999876544433
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHhHccC--CC-CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 517 -GIWGTLLCACKIHLNIEIGEYVAYCLFKLE--PH-SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 517 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...++++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 367778888999999999999999987543 44 4457788999999999999999999988874
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=3.3e-07 Score=76.36 Aligned_cols=98 Identities=10% Similarity=-0.133 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
.+...+..++..+...|++++|+..|++.. .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456778888888888999999998888865 344567888888899999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 048321 560 YALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 560 ~~~~g~~~eA~~~~~~m~~~ 579 (641)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=3.7e-07 Score=75.46 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=88.8
Q ss_pred CCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 481 NPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
..+...+..++..+.+.|++++|+..+++.. ..| +...|..+...+...|++++|+..+++++++.|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456778889999999999999999999965 444 67788999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 048321 559 KYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 559 ~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988763
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=3.8e-08 Score=88.39 Aligned_cols=169 Identities=12% Similarity=-0.032 Sum_probs=103.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChH
Q 048321 387 IDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 463 (641)
+......|++++|.+.++.-.. .....|..+...+...|++++|+..|++..+. .|+...+... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~- 79 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL- 79 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH-
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH-
Confidence 3344555666666666654332 13345666677777777777777777777764 2322111000 00
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
..-. . ......|..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..+++
T Consensus 80 ------~~~~--~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 80 ------LDKK--K----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp ------HHHH--H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHH--H----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000 0 0113566777788888888888888888865 344667888899999999999999999999
Q ss_pred hHccCCCCCccHHHHHHHHHhcCCchHHH-HHHHHHHh
Q 048321 542 LFKLEPHSAAPYVEMANKYALGGRWDGVA-NIRTMMKR 578 (641)
Q Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~eA~-~~~~~m~~ 578 (641)
+++++|+++..+..++.++...|+.+++. ..+..|..
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998888777 44554443
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=5.7e-07 Score=73.20 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=87.5
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..++..+.+.|++++|.+.++++. .+.+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999976 44467788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 048321 562 LGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~ 579 (641)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=6.7e-06 Score=78.73 Aligned_cols=160 Identities=11% Similarity=-0.067 Sum_probs=119.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCh----hhHHH
Q 048321 386 LIDMYSKCGSIGDARELFYALPEK-----I----VVSWTTMIAGCALNGEFVEALDLFHQLMELDLR-PNR----VTFLA 451 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 451 (641)
.+..+...|++++|...++...+. + ...+..+...+...|++++|+..|++....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999886541 1 113334666677778999999999999984322 222 26888
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCC--CCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-------CCCC-hhHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGI--SYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWG 520 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 520 (641)
+...|...|++++|...|+.+.+.... ...+. ...+..++..|.+.|++++|+..+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999999999998842210 01122 3467889999999999999999998764 1122 55788
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhHcc
Q 048321 521 TLLCACKIHL-NIEIGEYVAYCLFKL 545 (641)
Q Consensus 521 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 545 (641)
.+...+...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999 579999999988764
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=3.3e-07 Score=77.08 Aligned_cols=107 Identities=10% Similarity=-0.113 Sum_probs=79.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+.+....+ .+...|..+..+|.+.|++++|+..|++.. .+.++..|..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH----YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 444555567777888888888877775332 356667777788888888888888887765 33456678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+...|++++|+..+++++++.|+++........
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 899999999999999999999987766554433
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=5.8e-07 Score=83.46 Aligned_cols=137 Identities=9% Similarity=-0.100 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHH
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMAD 492 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~ 492 (641)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .+ .|. ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~---d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP---DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC---CcccHHHHHHHHHH
Confidence 34555666777777777777777654 35444444444466777788888777764432 10 111 235666777
Q ss_pred HhhccCChHHHHHHHHhCCCC---CC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 493 LLGRKGKLKEALDFVQSMPIK---SD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
++.+.|++++|+..|++.... |. ...+..+..++.+.|+.++|...+++++..+|+ +..+..|.+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 788888888888888876411 32 336667777888899999999999999998887 555555533
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=8.6e-08 Score=80.22 Aligned_cols=61 Identities=10% Similarity=-0.149 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc-------CCCCCccH----HHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL-------EPHSAAPY----VEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.|..+..++...|++++|+..+++++++ +|+++..| ...+.+|...|+++||.+.+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888888888888888888888 99999999 9999999999999999999988765
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=8.3e-07 Score=79.65 Aligned_cols=131 Identities=5% Similarity=-0.127 Sum_probs=67.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-CC-CChhHHHHHHHHhhccCChHHHHHHHHhCC----CCC-C----h
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-YN-PELDHYSCMADLLGRKGKLKEALDFVQSMP----IKS-D----A 516 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~----~ 516 (641)
++..+...+...|++++|...+++..+..... .. .....+..+...|...|++++|...+++.. ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 33444444444455555544444444211100 00 112334445555555555555555555432 011 1 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--C----CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--S----AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+..+...+...|++++|+..+++++++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 24555566666677777777777766654321 1 12346777888888888888877776554
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=3e-07 Score=75.56 Aligned_cols=94 Identities=3% Similarity=-0.094 Sum_probs=80.3
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc-------cHHH
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA-------PYVE 555 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 555 (641)
..+..++..+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..++++++++|++.. .|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 456678888999999999999998876 344 6778999999999999999999999999999987654 5667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048321 556 MANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 556 l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+|.+|...|++++|.+.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988764
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=1.1e-06 Score=70.68 Aligned_cols=109 Identities=10% Similarity=-0.062 Sum_probs=74.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+......+ .+...+..++.++.+.|++++|...+++.. .+.+...|..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 444455555666666666666666664322 345566666666677777777777766654 23356677778888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
+...|++++|...++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888999999999999998888877777666654
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=6.7e-07 Score=73.46 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
+...+..++..+...|++++|...+++.. .+.+...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999876 4446778899999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=4e-07 Score=78.55 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGK 595 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~ 595 (641)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 3578888888999999999999999999999999999999999999999999999999887763
Q ss_pred EEEEeeCCCCCCChh-cHHHHHHHHHHHHHHc
Q 048321 596 TCTFTAEDRYHAESE-LTYPVLDCLALHSREE 626 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~ 626 (641)
+|... .+...+..+...+++.
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 45555 6677777777666543
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=2.6e-06 Score=81.62 Aligned_cols=163 Identities=11% Similarity=-0.058 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--h
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE---KIV------VSWTTMIAGCALNGEFVEALDLFHQLMELDLR---PN--R 446 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 446 (641)
..+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888899888888865432 111 23344556667788999999999988763211 11 2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-----hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-----
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-----LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----- 515 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----- 515 (641)
.+++.+...|...|++++|...|+++.+... ..|+ ...+..++.+|.+.|++++|+..+++.. ..++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~--~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLE--ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3777788888999999999999998873221 1222 2578888899999999999999988754 1111
Q ss_pred --hhHHHHHHHHHHHcCCHHHH-HHHHHHhHcc
Q 048321 516 --AGIWGTLLCACKIHLNIEIG-EYVAYCLFKL 545 (641)
Q Consensus 516 --~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 545 (641)
..++..+...+...|++++| ...+++++.+
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45778888888999999999 7778887654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=1.4e-07 Score=84.69 Aligned_cols=96 Identities=7% Similarity=-0.085 Sum_probs=78.6
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-Ch----------------hHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DA----------------GIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
...+..+...+.+.|++++|+..|++.. ..| +. ..|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445566666777777777777776654 222 22 67888889999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 546 EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988753
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=4.3e-07 Score=93.45 Aligned_cols=118 Identities=7% Similarity=-0.114 Sum_probs=94.3
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 531 (641)
..+...|++++|.+.|+++.+..+ .+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345677888888888888886432 347788888888888899999988888865 444 56788899999999999
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHH--HHhcCCchHHHHHHHH
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANK--YALGGRWDGVANIRTM 575 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~~ 575 (641)
+++|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8899999999999874
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-06 Score=74.01 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
+...+..++..+.+.|++++|++.|++.. ..|+ ...|..+...+...|++++|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34555556666666666666666666643 4444 445666666666677777777777777777776666667777
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 048321 558 NKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777666554
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=1.3e-06 Score=75.49 Aligned_cols=107 Identities=9% Similarity=-0.096 Sum_probs=82.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+...+..+ .+...|..+..+|.+.|++++|+..|++.. .+.+...|..+...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555666677777777777777777775332 356677777788888888888888887765 33357788899999
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+...|++++|+..++++++++|+++..+...+-
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655543
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=9.5e-06 Score=77.96 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 048321 382 VCNALIDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCALN-G-EFVEALDLFHQLMELDLRP-NRVTFLAVLQ 454 (641)
Q Consensus 382 ~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 454 (641)
+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + ++++++++++++.+. .| |...+..-..
T Consensus 90 aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~w 167 (349)
T 3q7a_A 90 VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3333333333344 35555555554433 2334455444444443 4 555666666666553 23 2334443333
Q ss_pred HHhccCChH--------HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC-------hHHHHHHHHhCC--CCCChh
Q 048321 455 ACTHTGFLE--------KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK-------LKEALDFVQSMP--IKSDAG 517 (641)
Q Consensus 455 ~~~~~g~~~--------~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~p~~~ 517 (641)
.+.+.|.++ ++++.++.+.+... -+...|+....++.+.++ ++++++.++++. .+-|..
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp----~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDG----RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 333333333 66666666665332 445556666666666654 567777766654 334666
Q ss_pred HHHHHHHHHHHcCCH--------------------HHHHHHHHHhHccC------CCCCccHHHHHHHHHhcCCchHHHH
Q 048321 518 IWGTLLCACKIHLNI--------------------EIGEYVAYCLFKLE------PHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
.|+.+-..+.+.|+. .........+.... +..+-+...++++|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 777666666555542 22222222332222 3445567789999999999999999
Q ss_pred HHHHHHhC
Q 048321 572 IRTMMKRN 579 (641)
Q Consensus 572 ~~~~m~~~ 579 (641)
+++.+.++
T Consensus 324 ~~~~l~~~ 331 (349)
T 3q7a_A 324 VFEKLSSE 331 (349)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998643
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.5e-07 Score=72.35 Aligned_cols=109 Identities=6% Similarity=-0.195 Sum_probs=70.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~ 525 (641)
.+......+...|++++|...|+...+..+ .+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 344445555666666666666666664322 345566666666667777777777666654 2 3345677777777
Q ss_pred HHHcCCHHHHHHHHHHhHccC------CCCCccHHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLE------PHSAAPYVEMANKY 560 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 560 (641)
+...|++++|+..++++++++ |+++.....+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888887 76665555555544
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.1e-06 Score=72.39 Aligned_cols=110 Identities=9% Similarity=-0.149 Sum_probs=76.3
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT 521 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 521 (641)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|+..+++.. .+.+...|..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 455555566666666666666666653 2344 4556666677777777777777776654 2335667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
+...+...|++++|...++++++++|+++..+..+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888889999999999999999999887777666665543
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=3.2e-06 Score=75.77 Aligned_cols=153 Identities=13% Similarity=-0.033 Sum_probs=93.1
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHhccCChH
Q 048321 392 KCGSIGDARE---LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPN-RVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 392 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~ 463 (641)
..|++++|.+ .+..-......++..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 444433234456666777777777777777777776651 11222 235556666777777788
Q ss_pred HHHHHHHHHHhhhCCCCCC-C----hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcC
Q 048321 464 KGWAISIIQYDDKGISYNP-E----LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHL 530 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g 530 (641)
+|...+++..+... -.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|
T Consensus 84 ~A~~~~~~al~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 84 AARRCFLEERELLA--SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777664321 112 1 3346667777777888888877777653 1112 223466677777888
Q ss_pred CHHHHHHHHHHhHccC
Q 048321 531 NIEIGEYVAYCLFKLE 546 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~ 546 (641)
++++|...+++++++.
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888777653
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=5.3e-06 Score=71.42 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+..+ .+...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHHHH
Confidence 456667777778888888888888887752 22445677777778888888888888888875432 4566777888
Q ss_pred HHhhccCChHHHHHHHHhCC-C-CCChhHHHHH--HHHHHHcCCHHHHHHHHHHhHc
Q 048321 492 DLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTL--LCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 544 (641)
.++.+.|++++|...+++.. . +.+...+..+ ...+...|++++|...+++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888765 2 3344455333 3336677888888888776544
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=5.6e-07 Score=92.59 Aligned_cols=124 Identities=14% Similarity=0.042 Sum_probs=72.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
.+.+.|++++|++.|++..+. .|+ ..++..+..++...|++++|...++++.+..+ .+...|..+..+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 344566777777777776664 343 34666666667777777777777777664222 23556666677777777
Q ss_pred ChHHHHHHHHhCC-CCC-ChhHHHHHHHH--HHHcCCHHHHHHHHH-----------HhHccCCCC
Q 048321 499 KLKEALDFVQSMP-IKS-DAGIWGTLLCA--CKIHLNIEIGEYVAY-----------CLFKLEPHS 549 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~-----------~~~~~~p~~ 549 (641)
++++|++.+++.. ..| +...+..+..+ +...|++++|+..++ ++++++|+.
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 7777777776654 223 33344444444 566677777777777 666666653
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=2e-06 Score=71.53 Aligned_cols=100 Identities=7% Similarity=-0.235 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTL 522 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 522 (641)
+...+..+...+...|++++|...|+......+ .+...|..++.++...|++++|+..+++.. .+.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 344566666667777777777777777664322 345667777777777777777777777655 33356677788
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
...+...|++++|+..+++++++.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888776
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=2.8e-06 Score=86.95 Aligned_cols=144 Identities=8% Similarity=-0.040 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|..+...+.+.|++++|+..|++..+. .|+...+ . -+... ... .-....|..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~-------~~~~~~~~nl 323 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASE-------SFLLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHH-------HHHHHHHHHH
Confidence 346777777788888888888888887764 3332210 0 01100 000 0124567788
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
..+|.+.|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|++...+..++.++...|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998876 344677899999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHHh
Q 048321 569 VAN-IRTMMKR 578 (641)
Q Consensus 569 A~~-~~~~m~~ 578 (641)
|.+ +++.|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 875 4555543
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=2e-06 Score=70.67 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=63.8
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCCC-h---hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHHHHH
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKSD-A---GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMANKY 560 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 560 (641)
.++..+.+.|++++|...|++.. ..|+ . ..+..+...+...|++++|+..++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34555666777777777776654 2232 2 366667777777888888888888888888877 55677788888
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
...|++++|.+.++++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887777653
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=1.7e-06 Score=70.98 Aligned_cols=96 Identities=7% Similarity=-0.002 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-------CccHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-------AAPYV 554 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 554 (641)
...+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456777788888888888888888765 34466778888888899999999999999999988876 67788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=4.8e-05 Score=72.79 Aligned_cols=178 Identities=12% Similarity=0.000 Sum_probs=108.9
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC-hHHHHHHH
Q 048321 396 IGDARELFYALPE---KIVVSWTTMIAGCALNG--EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF-LEKGWAIS 469 (641)
Q Consensus 396 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~ 469 (641)
+++++.+++.+.. ++..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455555555443 35556666555555555 3677777777777652 2234455555555555666 46777777
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhcc--------------CChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc----
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRK--------------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---- 529 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~---- 529 (641)
+.+.+..+ -+...|+....++.+. +.++++++.+.... .+-|...|+-+-..+...
T Consensus 169 ~~~I~~~p----~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNF----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCS----CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCC----CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 77775433 4455555555444443 45777888877765 444677777665555444
Q ss_pred -------CCHHHHHHHHHHhHccCCCCCccHHHHHHHH---HhcCCchHHHHHHHHHHh
Q 048321 530 -------LNIEIGEYVAYCLFKLEPHSAAPYVEMANKY---ALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 530 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~eA~~~~~~m~~ 578 (641)
+.++++++.++++++++|++.-.+..++.+. ...|..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578888889999999998744443333322 235777788888887775
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.33 E-value=0.00023 Score=68.42 Aligned_cols=232 Identities=11% Similarity=-0.047 Sum_probs=158.6
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 048321 319 GYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC-G- 394 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 394 (641)
...+.+..++|++++.+++.. .|+. ..++.--..+...+ .++++..+++.++... +-+..+|+--...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 344455667888888888875 3443 33444334444455 5888888888888766 55667777766666665 6
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV--------EALDLFHQLMELDLRPNRVTFLAVLQACTHTGF-- 461 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-- 461 (641)
++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 78899999988877 45667776665565556666 8999999999873 2355577777777777765
Q ss_pred -----hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh--------------------HHHHHHHHhCC-C---
Q 048321 462 -----LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL--------------------KEALDFVQSMP-I--- 512 (641)
Q Consensus 462 -----~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~--- 512 (641)
++++++.++.+....+ -|...|+-+-.++.+.|+. .+..++..++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIP----HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cchHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6888999988886433 5567777777777776654 34455555544 1
Q ss_pred ----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhH-ccCCCCCccHHHHHH
Q 048321 513 ----KSDAGIWGTLLCACKIHLNIEIGEYVAYCLF-KLEPHSAAPYVEMAN 558 (641)
Q Consensus 513 ----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 558 (641)
.+.+..+.-|+..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2566788888899999999999999999987 778875555554443
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=3.8e-06 Score=66.64 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=66.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC---ChhHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGIWGTLL 523 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~ll 523 (641)
.+..+...+...|++++|...|+.+.+..+ .+...+..+..++.+.|++++|+..+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 455555566667777777777776664322 345566667777777777777777776654 333 456777777
Q ss_pred HHHHHc-CCHHHHHHHHHHhHccCCCCC
Q 048321 524 CACKIH-LNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 524 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 550 (641)
..+... |++++|++.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777777 888888888888888777653
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=3.7e-06 Score=68.17 Aligned_cols=99 Identities=7% Similarity=-0.044 Sum_probs=71.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+.+.+..+ .+...|..+..++.+.|++++|+..|++.. ..| +...|..+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344455567778888888888888875433 456777788888888888888888888765 344 56688888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+...|++++|+..++++++++|+++
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 8899999999999999999988753
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=3.7e-07 Score=73.74 Aligned_cols=82 Identities=16% Similarity=-0.022 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHhCC-C---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHH
Q 048321 497 KGKLKEALDFVQSMP-I---KS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~-~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
.|++++|+..|++.. . .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466667777776654 2 24 344677777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHh
Q 048321 572 IRTMMKR 578 (641)
Q Consensus 572 ~~~~m~~ 578 (641)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=8.2e-06 Score=79.73 Aligned_cols=119 Identities=13% Similarity=-0.014 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--KI----------------VVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+...+..+...|.+.|++++|...|++... |+ ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466888899999999999999999988654 22 356666666777777777777777776664
Q ss_pred CCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 441 DLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 441 g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
.|+ ...+..+..+|...|++++|...|+.+.+..+ .+...+..+..++.+.|++++|
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 343 33555666666666666666666666664222 2244455555555555555554
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=9.7e-05 Score=70.64 Aligned_cols=192 Identities=14% Similarity=0.043 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC-hHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG--SIGDARELFYALPE---KIVVSWTTMIAGCALNGE-FVEALDLF 434 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 434 (641)
++++..+++.+.... +-+..+|+--.-.+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777655 556677776666666667 47888888887765 566788877777777787 58999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhcc--------------CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc---
Q 048321 435 HQLMELDLRPNRVTFLAVLQACTHT--------------GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK--- 497 (641)
Q Consensus 435 ~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 497 (641)
+++.+.. +-|...|+.....+.+. +.++++++.+.......+ -|...|+-+-.++.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P----~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP----NDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccCc
Confidence 9998863 22444555544444333 457888999998886433 4566676565555555
Q ss_pred --------CChHHHHHHHHhCC-CCCChhHHHHHHHHH-----HHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 498 --------GKLKEALDFVQSMP-IKSDAGIWGTLLCAC-----KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 498 --------g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
+.++++++.++++. ..||. .|..+..+. ...|..++....+.++.+++|.....|..+..-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 46789999998877 66765 455433322 235788899999999999999876666655443
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=3.8e-06 Score=79.80 Aligned_cols=113 Identities=6% Similarity=-0.201 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTL 522 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 522 (641)
+...+..+...+...|++++|...|+.+.+..+ .+...|..+..+|.+.|++++|+..+++.. ..| +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345677777888999999999999999986433 367788889999999999999999998866 444 56688888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
..++...|++++|+..++++++++|+++..+...++...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 889999999999999999999999887655544444433
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=2.2e-06 Score=83.90 Aligned_cols=147 Identities=8% Similarity=-0.093 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ ....|..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-------------~~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-------------KNPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-------------HTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-------------HHHHHHHHH
Confidence 46777777788888899999998888875 555432 22334444433221 113677888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH-hcCCchH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA-LGGRWDG 568 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~e 568 (641)
.+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+.. ..+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 334 67789999999999999999999999999999999999999988844 4567788
Q ss_pred HHHHHHHHHhCC
Q 048321 569 VANIRTMMKRNQ 580 (641)
Q Consensus 569 A~~~~~~m~~~~ 580 (641)
+.++++.|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888776543
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=3.7e-06 Score=83.17 Aligned_cols=138 Identities=6% Similarity=-0.109 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..|..+...+.+.|++++|+..|++..+. .|+.. .... .+...+.. ..+...|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~~----~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKLQ----PVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGGH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHHH----HHHHHHHHHHH
Confidence 46777778888888888888888887762 11100 0001 11111111 12356788888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|+..++++++++|++...+..++.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865 445 5678889999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 048321 570 ANI 572 (641)
Q Consensus 570 ~~~ 572 (641)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=3e-05 Score=81.12 Aligned_cols=168 Identities=9% Similarity=0.025 Sum_probs=136.0
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccC
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGE----------FVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTG 460 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g 460 (641)
.-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+. .|.. .+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567777777654 345677776666666666 89999999999986 5554 47877777888888
Q ss_pred --ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC-ChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHc------
Q 048321 461 --FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG-KLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH------ 529 (641)
Q Consensus 461 --~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~------ 529 (641)
+++++.+.++.+.+..+ -+...|+.-..++.+.| .++++++.++++. ..| |...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~----~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEADE----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhcc----ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 67999999999997544 56778888888888889 8999999999987 444 777998888877663
Q ss_pred --------CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 530 --------LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 530 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
+.++++.+.++++++++|++.++|..+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999999665
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=4.6e-06 Score=68.29 Aligned_cols=105 Identities=9% Similarity=-0.011 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-hHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL-DHYSC 489 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~ 489 (641)
.++..+...+.+.|++++|+..|++.++. .|+. ..|..+..+|...|++++|++.|+..++.. |+. ..+..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cccchhhHH
Confidence 34556666666667777777777666664 3443 355556666666666666666666665422 110 00000
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 490 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+ ..+|..+...+...|++++|++.++++++..|+
T Consensus 82 ~-------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 I-------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp H-------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred H-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 0 123444555666666677777777666666654
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.8e-07 Score=72.11 Aligned_cols=94 Identities=6% Similarity=-0.080 Sum_probs=79.0
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------CccH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AAPY 553 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 553 (641)
++...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 355677888889999999999999998876 44467788999999999999999999999999999998 6778
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 048321 554 VEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 554 ~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
..++.++...|++++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 8888888888888877665543
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=4.2e-06 Score=68.59 Aligned_cols=46 Identities=2% Similarity=-0.175 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
..+|..+...+...|++++|...++++++..| ++.....+..++..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777 35555555554443
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=3.2e-06 Score=70.70 Aligned_cols=71 Identities=11% Similarity=-0.037 Sum_probs=57.2
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-C-------CCC-hhHH----HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-I-------KSD-AGIW----GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..++++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67777777777788777777777654 4 775 4478 899999999999999999999999999998766
Q ss_pred HHHH
Q 048321 553 YVEM 556 (641)
Q Consensus 553 ~~~l 556 (641)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5444
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=3.8e-06 Score=72.25 Aligned_cols=78 Identities=17% Similarity=0.058 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC-ccHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA-APYVEMANKY 560 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 560 (641)
...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++...|++++|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567888888899999999999888866 3 34577889999999999999999999999999999876 4444454444
Q ss_pred H
Q 048321 561 A 561 (641)
Q Consensus 561 ~ 561 (641)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=1.8e-05 Score=64.81 Aligned_cols=102 Identities=9% Similarity=-0.121 Sum_probs=62.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHH
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCAC 526 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~ 526 (641)
...+...|++++|...|+.+.+..+ -.+. ...+..++.++.+.|++++|...|++.. ..|+ ...+..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666654322 1110 1355556666666677777766666654 2232 44566777777
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
...|++++|...++++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 888888888888888888888765443333
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.1e-05 Score=82.22 Aligned_cols=166 Identities=7% Similarity=-0.149 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-CCC-Chh
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMEL-DLRPNRV----TFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-YNP-ELD 485 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~p-~~~ 485 (641)
++..+...|...|++++|.+.+.++... +..++.. +.+.+-..+...|.++++..++.......+.. ..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4677888899999999999998887752 1112221 22223334556788999999888776422100 122 245
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-------C
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-------A 550 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~ 550 (641)
.+..++..|...|++++|..++++.. .++. ..++..++..|...|++++|...+++++.+.|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77889999999999999999998754 1222 3477888889999999999999999987764322 2
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+..++.++...|+|++|.+.+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566788888999999999988766643
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=1e-05 Score=82.79 Aligned_cols=64 Identities=5% Similarity=-0.109 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999999999999999999999999999998864
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=3.5e-06 Score=72.07 Aligned_cols=128 Identities=11% Similarity=-0.008 Sum_probs=81.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----h
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----A 516 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~ 516 (641)
+..+...+...|++++|...++...+... -.++ ...+..+...+...|++++|.+.+++.. ..++ .
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34444455555555555555555543211 0011 1355666677777777777777776643 1111 3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC------CCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH------SAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++..+...+...|++++|...+++++++.+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35666777788888888888888888765322 234677889999999999999999887654
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=1e-05 Score=79.98 Aligned_cols=65 Identities=5% Similarity=-0.110 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999988763
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=1.9e-06 Score=69.43 Aligned_cols=92 Identities=7% Similarity=-0.058 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
.|++++|...|++..+... -.| +...+..++.+|.+.|++++|+..|++.. .+.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666677777777664210 012 34566777777777888888887777765 333566777788888888888888
Q ss_pred HHHHHHhHccCCCCCcc
Q 048321 536 EYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~ 552 (641)
+..++++++..|+++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 88888888888887544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=1e-05 Score=79.08 Aligned_cols=150 Identities=9% Similarity=-0.026 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
...+..+...+.+.|++++|...|++... ++... +...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44577788888999999999999998654 22211 222334444433221 136777888899
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHH-HHHcCCHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCA-CKIHLNIEI 534 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~-~~~~g~~~~ 534 (641)
+.|++++|...++.+.+..+ .+...|..+..+|...|++++|+..|++.. ..|+ ...+..|... ....+..+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986432 457888999999999999999999999986 5554 4455555554 234567888
Q ss_pred HHHHHHHhHccCCCCC
Q 048321 535 GEYVAYCLFKLEPHSA 550 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~ 550 (641)
+...++++++..|+++
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 8999999999999764
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.06 E-value=1.3e-05 Score=62.38 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 514 SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++..|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999988765
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=9.5e-06 Score=82.77 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=91.9
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCCh-hHHHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGT 521 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 521 (641)
+..+|++++|..++++..+.....+.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566777777777777664433222232 4567778888888888888888777753 34443 36788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHc-----cCCCCCc---cHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFK-----LEPHSAA---PYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
|...|...|++++|+.+++++++ +.|++|. ....+..++..+|++++|+.+++.+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998875 4677654 45578889999999999999999998753
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.04 E-value=1.3e-05 Score=60.82 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=67.0
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..+...+.+.|++++|+..+++.. .+.+...|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777788888888888888888765 33456688888888999999999999999999999998888999988887
Q ss_pred hcC
Q 048321 562 LGG 564 (641)
Q Consensus 562 ~~g 564 (641)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 665
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2.5e-05 Score=66.63 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLR-PNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE---- 483 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~---- 483 (641)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+... -.++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~ 88 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhCCcHHH
Confidence 4555666666667777777766666542100 111 2555566667777777777777777664322 1111
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
...+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3456667777778888888887777653 1111 33566677788888999999999888876543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=9.4e-06 Score=65.04 Aligned_cols=78 Identities=9% Similarity=-0.001 Sum_probs=64.0
Q ss_pred HHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 502 EALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 502 ~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555543 333 56688888888999999999999999999999998899999999999999999999999887653
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=6.9e-05 Score=76.12 Aligned_cols=159 Identities=9% Similarity=-0.073 Sum_probs=119.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCC
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPNR----------------VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYN 481 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (641)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+....+ ..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~--~~ 88 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM--QF 88 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH--TS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--Hc
Confidence 34567789999999999998875322111 1367788899999999999999999886544 22
Q ss_pred CCh----hHHHHHHHHhhccCChHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC---
Q 048321 482 PEL----DHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE--- 546 (641)
Q Consensus 482 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 546 (641)
++. ...+.+...+...|++++|.++++... ..+. ..++..|...+...|++++|...+++++...
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 332 234555666778899999999987753 2222 4477788899999999999999999887542
Q ss_pred ---CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 547 ---PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 547 ---p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|.....|..++.+|...|+|++|..++++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22245788999999999999999999987754
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=4.4e-06 Score=69.70 Aligned_cols=85 Identities=11% Similarity=-0.076 Sum_probs=61.7
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLN----------IEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
|.+++++|++.++... .+.+...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3344555555555543 22244455555555444443 67999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 048321 564 G-----------RWDGVANIRTMMKRNQ 580 (641)
Q Consensus 564 g-----------~~~eA~~~~~~m~~~~ 580 (641)
| ++++|.+.+++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988753
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.81 E-value=6e-05 Score=57.21 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=60.0
Q ss_pred CCChhHHHHHHHHHHHcCC---HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 513 KSDAGIWGTLLCACKIHLN---IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
++|+..+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|.+.|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567788888888765554 7999999999999999999999999999999999999999999998764
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.00029 Score=73.72 Aligned_cols=148 Identities=7% Similarity=-0.070 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCC----------hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 425 GEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGF----------LEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
...++|++.++++... .|+.. .|+.--.++.+.|+ ++++.+.++.+.+..+ -+...|..-.-+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p----K~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----KSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHH
Confidence 3457889999999986 67765 45554445555666 8999999999997544 557778888888
Q ss_pred hhccC--ChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC-CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc-----
Q 048321 494 LGRKG--KLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL-NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG----- 563 (641)
Q Consensus 494 ~~~~g--~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 563 (641)
+.+.| ++++|+++++++. .+-|..+|+.-.......| .++++.+.++++++.+|.|.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88889 6799999999987 4457889999999999999 999999999999999999999999999998875
Q ss_pred ---------CCchHHHHHHHHHHh
Q 048321 564 ---------GRWDGVANIRTMMKR 578 (641)
Q Consensus 564 ---------g~~~eA~~~~~~m~~ 578 (641)
+++++|.+.+++...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 567889888877654
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00031 Score=55.27 Aligned_cols=65 Identities=9% Similarity=-0.110 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999999999999999999999998864
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=2.9e-05 Score=64.74 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC----------hHHHHHHHHhCC-CCC-ChhHHHHHHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK----------LKEALDFVQSMP-IKS-DAGIWGTLLCACK 527 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 527 (641)
+.+++|.+.++...+..+ .+...|..+..++...|+ +++|+..|++.. ..| +..+|..+..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345555555555554322 334555555555555544 346666666654 334 4456666777666
Q ss_pred Hc-----------CCHHHHHHHHHHhHccCCCCC
Q 048321 528 IH-----------LNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 528 ~~-----------g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.. |++++|+..++++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 55 589999999999999999863
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.67 E-value=0.00017 Score=54.32 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34578888889999999999999999999999999999999999999999999999999988763
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.00043 Score=57.28 Aligned_cols=89 Identities=4% Similarity=-0.148 Sum_probs=53.4
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh---
Q 048321 490 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL--- 562 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 562 (641)
|...|...+.+++|++.|++.....++..+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555544433344555555555555 56666777777666655 446667777777777
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 048321 563 -GGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 563 -~g~~~eA~~~~~~m~~~~ 580 (641)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 677777777777766654
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=7.3e-05 Score=59.68 Aligned_cols=81 Identities=5% Similarity=-0.154 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
++...|+...+..+ .+...+..++..|.+.|++++|+..|++.. .+.+...|..+...+...|++++|+..+++
T Consensus 3 ~a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGT----DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555666654222 345666777777777777777777777755 333456777777788888888888888888
Q ss_pred hHccCCC
Q 048321 542 LFKLEPH 548 (641)
Q Consensus 542 ~~~~~p~ 548 (641)
++++.|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887764
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00025 Score=72.28 Aligned_cols=124 Identities=7% Similarity=-0.082 Sum_probs=81.2
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhh----hCCCCCCC-hhHH
Q 048321 420 GCALNGEFVEALDLFHQLMEL---DLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDD----KGISYNPE-LDHY 487 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~p~-~~~~ 487 (641)
.+...|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..++++..+. .|. -.|+ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 345677888888877776652 122332 26777777888888888888877776632 331 1222 4567
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC---------CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP---------IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.|..+|...|++++|+.++++.. ..|+.. +...+..++...+.+++|+.+++++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887753 334333 333444555677888888888887754
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=6e-05 Score=75.70 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc-----CCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL-----EPHSA---APYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~ 589 (641)
+++.|...|...|++++|+.++++++++ .|++| ..+..|+.+|..+|++++|..++++..+. ..+..|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i-~~~~lG--- 406 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI-MRVTHG--- 406 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTC---
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhcC---
Confidence 5677777777788888888887777643 34444 46788999999999999999999887652 111112
Q ss_pred EEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHH
Q 048321 590 FHINGKTCTFTAEDRYHAESELTYPVLDCLALHSR 624 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 624 (641)
..||...+++..|.....+|+
T Consensus 407 --------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 407 --------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp --------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHh
Confidence 369999999999998888775
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.42 E-value=0.00035 Score=57.53 Aligned_cols=63 Identities=6% Similarity=-0.156 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccC-C-CCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 515 DAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLE-P-HSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+..+...+.+++.+.+ +.++|+.+++.+++.+ | ++...+..++-.|.+.|++++|.+.++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3334444444444443 3334444444444444 3 223444444444444444444444444444
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=7e-05 Score=75.05 Aligned_cols=82 Identities=9% Similarity=-0.060 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc-----CCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL-----EPHSA---APYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~ 589 (641)
+++.|..+|...|++++|+.++++++++ .|++| ..|..|+.+|..+|++++|..++++..+.- .+..|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~-~~~lG--- 417 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM-EVAHG--- 417 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC---
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHcC---
Confidence 5677777777777777777777777642 44444 467789999999999999999988876521 11111
Q ss_pred EEECCEEEEEeeCCCCCCChhcHHHHHH
Q 048321 590 FHINGKTCTFTAEDRYHAESELTYPVLD 617 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 617 (641)
..||...+++..|+
T Consensus 418 --------------~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 418 --------------KDHPYISEIKQEIE 431 (433)
T ss_dssp --------------TTCHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHh
Confidence 25888887776654
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.32 E-value=0.00051 Score=52.78 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=34.2
Q ss_pred HHHhhccCChHHHHHHHHhCC-CCC-Chh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-IKS-DAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+..+.+.|++++|+..+++.. ..| +.. .|..+...+...|++++|+..++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555566666666655543 222 334 555555555556666666666666666666554443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0047 Score=59.22 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++.++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444444445555555555555555543 34445555555555555555555554433
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0011 Score=54.75 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=92.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCC
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGK 499 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 499 (641)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|+...+ . -+...+..|..+|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~-----g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L-----NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCcc
Confidence 356889999999999987 34433 66677777889999999999884 2 366778888888887 889
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCC
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 547 (641)
+++|++.|++.....++..+..|...|.. .+|.++|...++++.+...
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999998755678888888888888 8999999999999988743
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.24 E-value=0.001 Score=66.54 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCCh-hHHHHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGTLLC 524 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ll~ 524 (641)
.|++++|..++++..+.....+.|+ ..+++.|..+|...|++++|+.++++.. ..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666554322222233 3456677777777777777777776643 33443 36778888
Q ss_pred HHHHcCCHHHHHHHHHHhHcc-----CCCCCc
Q 048321 525 ACKIHLNIEIGEYVAYCLFKL-----EPHSAA 551 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 551 (641)
.|...|++++|+.++++++++ .|++|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888887753 566543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.24 E-value=0.00098 Score=51.13 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=55.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh-HHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPELD-HYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKI 528 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~ 528 (641)
....+...|++++|...|+.+.+..+ .+.. .+..+..+|.+.|++++|++.|++.. ..|+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 34456677788888888887775322 3455 67777777778888888888777765 3343 333311
Q ss_pred cCCHHHHHHHHHHhHccCCCCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+.+.++...++++...+|+++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCS
T ss_pred -HHHHHHHHHHHHHhccCcccc
Confidence 455666666666666666543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0022 Score=64.29 Aligned_cols=96 Identities=11% Similarity=-0.123 Sum_probs=53.7
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCCh-hHHHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGTL 522 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l 522 (641)
.+.|++++|..++++..+.....+.|+ ..+++.++.+|...|++++|+.+++++. ..|+. .+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 344555555555555543222112222 2345555566666666666666655532 23332 356777
Q ss_pred HHHHHHcCCHHHHHHHHHHhHc-----cCCCCCcc
Q 048321 523 LCACKIHLNIEIGEYVAYCLFK-----LEPHSAAP 552 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 552 (641)
...|...|++++|+.+++++++ +.|++|.+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 7777888888888888777765 35665543
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.0047 Score=59.22 Aligned_cols=154 Identities=13% Similarity=-0.046 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHH--cCC---hHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhc---cC-----C
Q 048321 396 IGDARELFYALPEKIVVSWTTMIAGCAL--NGE---FVEALDLFHQLMELDLRPNRV-TFLAVLQACTH---TG-----F 461 (641)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~---~g-----~ 461 (641)
..++.......+ .+...|...+.+... .++ ..+|..+|++..+. .|+.. .+..+..+|.- .+ .
T Consensus 180 ~~e~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~ 256 (372)
T 3ly7_A 180 QRMQETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQ 256 (372)
T ss_dssp HHHHHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhh
Confidence 334444444433 477888888876543 333 47899999999986 78764 55555555531 11 1
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
.....+.+........ ...+...|..+...+...|++++|...++++. ..|+...|..+...+...|+.++|.+.++
T Consensus 257 ~~~l~~a~~a~~a~~~--~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 257 LAALNTEIDNIVTLPE--LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHHHTCGG--GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1111122222211112 34667888888887888899999999999987 56887788778888899999999999999
Q ss_pred HhHccCCCCCccHHH
Q 048321 541 CLFKLEPHSAAPYVE 555 (641)
Q Consensus 541 ~~~~~~p~~~~~~~~ 555 (641)
+++.++|..+ .|..
T Consensus 335 ~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 335 TAFNLRPGAN-TLYW 348 (372)
T ss_dssp HHHHHSCSHH-HHHH
T ss_pred HHHhcCCCcC-hHHH
Confidence 9999999853 4443
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.06 E-value=0.061 Score=42.40 Aligned_cols=140 Identities=12% Similarity=-0.020 Sum_probs=99.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
...|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+. ...+|++.
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD----------------is~C~NlK 78 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD----------------LDKCQNLK 78 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC----------------GGGCSCTH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC----------------cHhhhcHH
Confidence 3457777777777777653 2344555555544444555555555555543332 34567777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 502 EALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 502 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
.....+-.+. .+...+..-+......|..++-.++...++.-+|-+|+...-++++|.+.|+..+|.+++.+..++|+
T Consensus 79 rVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 79 SVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 7777666654 24445666778888999999999999997666666799999999999999999999999999999997
Q ss_pred c
Q 048321 582 K 582 (641)
Q Consensus 582 ~ 582 (641)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0027 Score=48.86 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+...|..+...|...|++++|+..|++..+. .|+ ...+..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666666666667777777777666664 343 33555666666666777777666666654
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.00 E-value=2e-05 Score=76.65 Aligned_cols=438 Identities=10% Similarity=0.095 Sum_probs=247.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhc
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDE 100 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~ 100 (641)
.|..|-.+....+++.+|++.|-+. -|+..|..++.++.+.|.+ ++-.+.+.-
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~---------------------edLv~yL~M 108 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW---------------------EELVKYLQM 108 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCC---------------------TTHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCH---------------------HHHHHHHHH
Confidence 5888889998888888888766332 2566778888888555444 333333322
Q ss_pred cC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH
Q 048321 101 MA--VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV 178 (641)
Q Consensus 101 ~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 178 (641)
.. .++...=+.|+-+|++.++..+-.+++ -.||..-...+-.-|...|.++.|+-+|.. ..-
T Consensus 109 aRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~---------isN 172 (624)
T 3lvg_A 109 ARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSN 172 (624)
T ss_dssp TSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG---------SCC
T ss_pred HHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh---------Ccc
Confidence 22 235556678888999988866533322 247777777888888888888887766653 233
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
|..|...+.+.|++..|.+.-++. .++.+|-.+-.+|...+.+.-|.-.--.++- ....+..++..|-..|
T Consensus 173 ~akLAstLV~L~~yq~AVdaArKA----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G 243 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRG 243 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTTTTTTC----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCC
Confidence 555666677777777766543333 6788999999999999998877655444432 2233445667788899
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCC-------CcchHHHHHHHHHhCCChh
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDR-------TRVSWTAMISGYAQKGDLD 327 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~ 327 (641)
.+++-..+++...... .....+++-|.-.|+|- +.++..+.++.. .-| ....|.-++-.|++..+++
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 9999888887766322 35678899999999885 455555554433 222 3457889999999888888
Q ss_pred HHHHHHHHHHHc-----------C---CCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 328 EALRLFFAMEAA-----------G---ELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 328 ~A~~~~~~m~~~-----------~---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
.|.... .+. . -..|...|-..|.-|....-. .-..++.-+ ...+.+ +..++.+.+.
T Consensus 322 nA~ltM---i~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~-lL~DLL~vL-~prlDh-----~RvV~~~~k~ 391 (624)
T 3lvg_A 322 NAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL-LLNDLLMVL-SPRLDH-----TRAVNYFSKV 391 (624)
T ss_dssp HHHHTT---TSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCT-TSHHHHHHH-CTTCCS-----TTTHHHHHTT
T ss_pred HHHHHH---HhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChH-HHHHHHHhc-cccCCh-----HHHHHHHHhc
Confidence 775432 111 0 012333333333333322110 000111110 111111 1234556666
Q ss_pred CCHHHHHHHHhhCCCCChhHH-HHHHHHHHHcCChHHHH------------HHHHHHHHcCCCCChhhHHHHHH-HHhcc
Q 048321 394 GSIGDARELFYALPEKIVVSW-TTMIAGCALNGEFVEAL------------DLFHQLMELDLRPNRVTFLAVLQ-ACTHT 459 (641)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~------------~~~~~m~~~g~~p~~~t~~~ll~-~~~~~ 459 (641)
|++.-....+......|...- .++-..|....+++.-. .+-+++.+. +..-|..+.. .|.+.
T Consensus 392 ~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~eFRrIAA~LYkkn 467 (624)
T 3lvg_A 392 KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGN 467 (624)
T ss_dssp TCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSHHHHHHHHHHHHTT
T ss_pred CCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chHHHHHHHHHHHHhc
Confidence 666666666666666554433 34455566666654322 222222221 2223333322 45556
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++++++..+.++ .+ +-.| -|+.-+..|+.+-|.++++-.....+...+.+.+-.|...=+.+.++++
T Consensus 468 ~rw~qsi~l~Kk----Dk--lykD------AietAa~S~~~elaeeLL~yFv~~g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 468 NRWKQSVELCKK----DS--LYKD------AMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CHHHHHSSCSST----TC--CTTG------GGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred ccHHHHHHHHHh----cc--cHHH------HHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHhhccChHHHHHH
Confidence 666665544221 11 1111 1233344455444444444333223334455555555555555555544
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.77 E-value=0.0035 Score=57.54 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=67.6
Q ss_pred hHHHHHHHHhCC-CCCC---hhHHHHHHHHHHH-----cCCHHHHHHHHHHhHccCCCC-CccHHHHHHHHHhc-CCchH
Q 048321 500 LKEALDFVQSMP-IKSD---AGIWGTLLCACKI-----HLNIEIGEYVAYCLFKLEPHS-AAPYVEMANKYALG-GRWDG 568 (641)
Q Consensus 500 ~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~e 568 (641)
..+|...+++.. ..|+ ...|..|...|.. -|+.++|+++|+++++++|+. ..+++.+++.|++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345555555544 4555 5577777777777 489999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048321 569 VANIRTMMKRNQVKKFPG 586 (641)
Q Consensus 569 A~~~~~~m~~~~~~~~~~ 586 (641)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988876543343
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.69 E-value=0.00057 Score=66.77 Aligned_cols=237 Identities=11% Similarity=0.082 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSF 254 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 254 (641)
.+.+|..|..++...+++.+|++-|-+. .|+..|..+|.+..+.|.+++-+..+.-.++.. -+...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 3445666666666666666665544332 455556666666666666666666555444332 2223334556666
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC------------------------CCCCc
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI------------------------CDRTR 310 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------------------~~~~~ 310 (641)
++.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+ ...++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66665544333221 244444445555555666666665555444 12367
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
.+|-.+-.+|...+.+.-|.-.--.++- .||. +..++..|-..|.+++-..+++.-.... .....+++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 7999999999999998877665444442 2221 2235667888888888888877766322 45677888888888
Q ss_pred HhcCCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHHHcCChHHHH
Q 048321 391 SKCGSIGDARELFYALPE----K-------IVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~ 431 (641)
+|- ++++-.+.++.... | ....|.-++-.|.+-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 875 45555555544332 2 3457999999999888888775
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.49 E-value=0.023 Score=42.71 Aligned_cols=76 Identities=9% Similarity=-0.017 Sum_probs=58.0
Q ss_pred CCChhHHHHHHHHhhccCC---hHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHH
Q 048321 481 NPELDHYSCMADLLGRKGK---LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVE 555 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (641)
.++...+..+..++...++ .++|..++++.. ..| ++..+..+...+...|++++|+..++++++.+|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3567778888877765544 689999998876 445 5667778888899999999999999999999998 444444
Q ss_pred HH
Q 048321 556 MA 557 (641)
Q Consensus 556 l~ 557 (641)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.43 E-value=0.0084 Score=47.35 Aligned_cols=68 Identities=12% Similarity=-0.070 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHhhccCChHH---HHHHHHhCCC-C-C--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 482 PELDHYSCMADLLGRKGKLKE---ALDFVQSMPI-K-S--DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
|+..+--.+.-++.+..+..+ ++.++++... . | .-...-.|.-++.+.|+++.|.+.++.+++.+|+|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444444444555555554433 5555555431 1 2 11122333444555555555555555555555553
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.31 E-value=0.012 Score=48.40 Aligned_cols=85 Identities=13% Similarity=-0.050 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC---ChHHHHHHHHhCC-CC-C--ChhHHHHHHHHHHHcCCHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG---KLKEALDFVQSMP-IK-S--DAGIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~~ 534 (641)
+..+++.|..... .+ .++..+.-.+.-++.+.+ +.++++.++++.. .. | +...+-.|.-+|.+.|++++
T Consensus 14 l~~~~~~y~~e~~-~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKA-AG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHH-TT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHc-cC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3444455554442 22 256666666666677666 4557777776654 22 4 24466677788899999999
Q ss_pred HHHHHHHhHccCCCCC
Q 048321 535 GEYVAYCLFKLEPHSA 550 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~ 550 (641)
|.+.++++++++|+|.
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 9999999999999864
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.19 E-value=0.014 Score=45.04 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=51.8
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
..-+-.|+..+.+.|+++.|...++.+. ..+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344455666666666666666665543 0124557888889999999999999999999999999866544
Q ss_pred HH
Q 048321 555 EM 556 (641)
Q Consensus 555 ~l 556 (641)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.041 Score=60.65 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=59.4
Q ss_pred HhcCCHHHHHH-HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 391 SKCGSIGDARE-LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 391 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
...+++++|.+ ++..+..+ .....++..+.+.|..++|+++.+.-.. - .......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHH
Confidence 44677777777 55444311 1226666667777777777765532111 1 12234567777777663
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+ ...+...|..+...+.+.|+++.|.+.|..+.
T Consensus 676 ~---------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 T---------DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp T---------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred H---------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 12456677788888888888888888877765
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.09 E-value=0.08 Score=42.53 Aligned_cols=65 Identities=5% Similarity=-0.103 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCC-CCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 514 SDAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPH-SAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 514 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|+..+-..+.+++.+.. +..+++.+++.++...|. .......|+-.+.+.|+|++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444555554443 334555555555555552 234455555556666666666666655554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.43 Score=40.27 Aligned_cols=129 Identities=14% Similarity=0.047 Sum_probs=75.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHH
Q 048321 388 DMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWA 467 (641)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 467 (641)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777665 4566788888888888888888888877653 3344444555666655544
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 048321 468 ISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 468 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
+-+... ..| -++.-...+.-.|+++++.+++.+...-|.. ......+|-.+.|.++.+++
T Consensus 82 la~iA~-~~g--------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE--------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT--------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc--------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 433333 222 1333334455567777777777665422211 11223456666666665544
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.02 Score=60.86 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=81.2
Q ss_pred HHHHHHHhccCC-hHHHHHHHHHHHhhhCCCCCCChhHH--HHHHHHhhccCCh-HHHHHHHHhCC---------CCC-C
Q 048321 450 LAVLQACTHTGF-LEKGWAISIIQYDDKGISYNPELDHY--SCMADLLGRKGKL-KEALDFVQSMP---------IKS-D 515 (641)
Q Consensus 450 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~---------~~p-~ 515 (641)
..++..+.-.++ ++.|..+|+.+... . |....+ ..++..+.+.+.- -+|..++.+.. .++ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~-~----p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK-D----PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH-C----GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh-C----CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 445555555555 57788888887742 2 443332 2334444444322 23444443321 111 1
Q ss_pred ----------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 516 ----------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 516 ----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
......-...|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|.-.+..++
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222334557788999999999999999999999999999999999999999999998875
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.77 E-value=0.17 Score=55.62 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred HHHHhcCChhHHHH-HHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh
Q 048321 114 VGFAQMGFLENVLR-LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 114 ~~~~~~g~~~~a~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 192 (641)
......+++++|.+ ++..+ |+......++..+...|.++.|.++.+. . ..-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445788888876 44221 1112236666667777777777765421 1 1113445678999
Q ss_pred hHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 048321 193 KMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH 272 (641)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (641)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+....
T Consensus 669 ~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 669 TLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988776 4578899999999999999999999988743 33444444446666655555544444
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 273 YGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 273 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
.|. ++.-..+|.+.|++++|.+++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 431 23334455666777776665544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.33 E-value=0.022 Score=52.33 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcc-----CChHHHHHHHHhCC-CCCC--hhHHHHHHHHHHH-cCCHHHHHHHHHHhHccCCC
Q 048321 486 HYSCMADLLGRK-----GKLKEALDFVQSMP-IKSD--AGIWGTLLCACKI-HLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 486 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 548 (641)
.|..++..|.+. |+.++|.+.|++.. ..|+ ..++..+...++. .|+.+++.+.+++++..+|+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344444444442 44555555554443 3331 3344444444433 25555555555555555554
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.57 Score=39.51 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=74.6
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 289 YSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
...+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45677888887777665 3456788888888888888888888876532 223333344456655555544
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQL 437 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (641)
+.....| . ++.-...+.-.|+++++.++|.+....+. -+......|-.+.|.++.+++
T Consensus 84 ~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 4444444 1 33444455566777777777766654211 111122345666666666554
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.18 E-value=0.069 Score=42.30 Aligned_cols=63 Identities=5% Similarity=-0.113 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCC-CCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 516 AGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPH-SAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+-..+.+++.+.. +..+|+.+++.+++.+|. ....+..|+-.+.+.|++++|.+..+.+.+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333334444444333 233455555555554442 234445555555555555555555555543
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.17 E-value=4.6 Score=43.98 Aligned_cols=255 Identities=12% Similarity=-0.016 Sum_probs=123.6
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----------cchHHHHHHHH
Q 048321 254 FVCPEALVQGRLVHSHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLFDGIC-DRT----------RVSWTAMISGY 320 (641)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~~ 320 (641)
....|+.+++..++...+..+-..+ ...-..+.-+...+|.-+++..++.... ..+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456677777666655433110112 2233334444555565556666554431 111 11122233333
Q ss_pred HhCCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH--hcCC
Q 048321 321 AQKGD-LDEALRLFFAMEAAGELPDLVTVL--SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS--KCGS 395 (641)
Q Consensus 321 ~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~ 395 (641)
+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...++.+++ -.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2456666666655321 1111111 22233556677777777777766532 2233333333333 5667
Q ss_pred HHHHHHHHhhCCC-CCh-hHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHH
Q 048321 396 IGDARELFYALPE-KIV-VSWT---TMIAGCALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 396 ~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~ 468 (641)
.+.+..+.+.+.. .+. .-|. ++..+|+-.|+.....++++.+... ++.. ....+.-++...|..+.+.++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 6666666555542 222 2233 2334566677766555577777763 2222 222222244445665566666
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhhccCCh-HHHHHHHHhCCCCCChhHH
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKL-KEALDFVQSMPIKSDAGIW 519 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 519 (641)
++.+.+. ..|.+..-.++.-+....|.. .+|++++..+...+|..+-
T Consensus 617 v~~L~~~----~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKS----HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTTGGGC----SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHhc----CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 6655532 235555555555555555553 5677777777655554433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.88 E-value=0.21 Score=39.37 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH---HHHHHHHHHhhhCCCCCC--ChhHHHHHHHHhhccCC
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEK---GWAISIIQYDDKGISYNP--ELDHYSCMADLLGRKGK 499 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 499 (641)
.....+.+-|.+....|. |+..+--.+..++.++..... ++.+++.+.+.. .| .....-.|.-++.|.|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhh
Confidence 334445555555555443 555555556666666665544 677777666421 13 23344455566777777
Q ss_pred hHHHHHHHHhCC-CCCC
Q 048321 500 LKEALDFVQSMP-IKSD 515 (641)
Q Consensus 500 ~~~A~~~~~~~~-~~p~ 515 (641)
+++|.+.++.+. ..|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 777777777765 4553
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.77 E-value=0.15 Score=39.18 Aligned_cols=64 Identities=8% Similarity=-0.150 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC-------CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE-------PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++.....+...+...|+++.|...++++++.. +..+..+..++.+|.+.|++++|...++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34456678888999999999999999998753 23356788999999999999999999998875
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.69 E-value=4.9 Score=41.92 Aligned_cols=114 Identities=7% Similarity=-0.041 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTF----LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 500 (641)
.+.+.|..+|....... ..+.... ..+.......+...++...+..... . .++.....-.+....+.|++
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R----SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T----CCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c----CCChHHHHHHHHHHHHCCCH
Confidence 36788888887776543 2233222 2222233344434556666665442 1 23333333344444567888
Q ss_pred HHHHHHHHhCCCCC-ChhHHH-HHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 501 KEALDFVQSMPIKS-DAGIWG-TLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 501 ~~A~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.|...|+.|+..+ +..-|. =+..+....|+.++|...++++.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888887332 222222 233455677888888888888765
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.39 E-value=5.1 Score=37.44 Aligned_cols=169 Identities=9% Similarity=-0.023 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhc
Q 048321 281 VINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRL----FFAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3555666788899999999886432 3445667887666554 455566789999988888887765
Q ss_pred CcCchH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc---CC
Q 048321 357 QSGALE-LGKWFDNYAC----SGG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALN---GE 426 (641)
Q Consensus 357 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 426 (641)
....-+ .=..+.+.++ +.| -.-++.....+...|.+.|++.+|+..|-.-...+...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533111 1123333333 333 2247788899999999999999999888733323455555555444433 43
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhh
Q 048321 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 475 (641)
..++-- ..-..++ -|...|++..|..+|+...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1122223 344568899998888877644
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.92 E-value=0.19 Score=40.71 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHhccCCh------HHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHH------hhccCChHHHHHHHHhCC
Q 048321 445 NRVTFLAVLQACTHTGFL------EKGWAISIIQYDDKGISYNPEL-DHYSCMADL------LGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~ 511 (641)
|..++...+....+.|+. ++.+.+|+++.... +|+. ..|...|.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~----Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL----PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS----CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC----CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334677777776666776 67777777766543 3442 112222211 122355555666655553
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 512 --IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 512 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+.=..+|......-.++|+++.|.+++.+++++.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111445555555555566666666666666665554
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.95 E-value=3.9 Score=32.46 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 292 CGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
||++......+-.+. .+....+.-+..+...|.-++-.+++..+.. +.+|++..+..+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444444332 2233445556666777777777777777543 24566666777777777777777777777777
Q ss_pred HHcCCC
Q 048321 372 CSGGLK 377 (641)
Q Consensus 372 ~~~~~~ 377 (641)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 776643
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.86 E-value=1.8 Score=35.08 Aligned_cols=100 Identities=6% Similarity=0.021 Sum_probs=62.5
Q ss_pred CCCcccHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCChhh----HHHHHHH---HhccCChhHHHHHHHHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFL------ENVLRLFYNMRLVGIQADFVT----VMGLTQA---AIHAKHLSLLKSVHSFGIH 169 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~------~~a~~l~~~m~~~g~~p~~~t----~~~ll~~---~~~~~~~~~a~~~~~~~~~ 169 (641)
+.|..+|=..+...-+.|++ ++.+++|++.... ++|+... |..+.-- +...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888998 8888888887764 6666421 2111111 1123677777777777766
Q ss_pred HcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 170 IGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 170 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
.+-.. ..+|......-.+.|+++.|++++.....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 52222 45555555555666777777777665544
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.98 E-value=10 Score=35.44 Aligned_cols=131 Identities=10% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHH----HHHHHHCCCCCChhhHHHHHHH
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNF----YRHMMYNGFRLDVTTVVSLLSS 253 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~ 253 (641)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+...+.+++++......++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445666678888888888876432 2245566776666554 5555667888888888877777
Q ss_pred hcCCCch-HHHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 048321 254 FVCPEAL-VQGRLVHSHGIH----YG--FDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYA 321 (641)
Q Consensus 254 ~~~~~~~-~~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 321 (641)
+.....- ..-..+...+++ .| ...++.....+...|.+.|++.+|+..|-.-...+...+..++.-+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 6553321 122344444443 32 23477888899999999999999998776332223444444444333
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.37 E-value=11 Score=37.65 Aligned_cols=258 Identities=9% Similarity=-0.019 Sum_probs=125.2
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHH-cCCCChhHHHHHHHHh----Hc
Q 048321 119 MGFLENVLRLFYNMRLV-----GIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI-GVDADVSVCNTWISSY----AK 188 (641)
Q Consensus 119 ~g~~~~a~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~----~~ 188 (641)
.|+++.|++.+..+.+. ...........+++.|...++++...+.+..+.+. |..+ .....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 36788998888776543 23344556778888999999998887766655432 2211 2222333222 22
Q ss_pred CCChh--HHHHHHhcccCCCCC--------chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC
Q 048321 189 CDDLK--MAELVFCGIEERLRT--------VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 189 ~g~~~--~A~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
....+ .-..+.+.+...... ......|...|...|++.+|.+++.++...-...+....
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~----------- 175 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE----------- 175 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-----------
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-----------
Confidence 22222 222233332221000 011234556666667777777776666432111111100
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCC--cchHHHHHHHHHhCCChhH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC--------DRT--RVSWTAMISGYAQKGDLDE 328 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~--~~~~~~li~~~~~~g~~~~ 328 (641)
-..++...++.|...+++..|..++.++. .++ ...+..++..+...+++.+
T Consensus 176 -------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 176 -------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 01233444555666666666655554431 111 1234455556666677777
Q ss_pred HHHHHHHHHHc-CCCCCHHHHH-----HHHHH-hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHH
Q 048321 329 ALRLFFAMEAA-GELPDLVTVL-----SMISG-CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC--GSIGDA 399 (641)
Q Consensus 329 A~~~~~~m~~~-~~~p~~~t~~-----~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A 399 (641)
|...|.+.... ....|...+. .++.. ++..++ +.. .+.........-++...+..++.+|... .+++.+
T Consensus 237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~-~~~-~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~ 314 (445)
T 4b4t_P 237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN-LQN-DLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIV 314 (445)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS-TTH-HHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc-hHH-HHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHH
Confidence 76666655431 1111221111 11111 122221 111 1222222222235677888889888764 567888
Q ss_pred HHHHhhCCCCC
Q 048321 400 RELFYALPEKI 410 (641)
Q Consensus 400 ~~~~~~~~~~~ 410 (641)
.+.|.....++
T Consensus 315 ~~~~~~~L~~~ 325 (445)
T 4b4t_P 315 QKTYEPVLNED 325 (445)
T ss_dssp HHHTCSSTTTC
T ss_pred HHHHHHHhccc
Confidence 88887766543
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.02 E-value=1.6 Score=32.37 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~----~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG----PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc----CchhhHHHHHH
Confidence 4456666677777778889999999999999999999999999999887766 44556766654
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.76 E-value=13 Score=34.90 Aligned_cols=168 Identities=14% Similarity=0.007 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhc
Q 048321 281 VINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLF----FAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
.|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566678899999999987643 234456677776655544 55566788999988888888776
Q ss_pred CcCchH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHH
Q 048321 357 QSGALE-LGKWFDNYAC----SGG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVE 429 (641)
Q Consensus 357 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 429 (641)
....-+ .=..+.+.++ +.| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+--+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655321 1123333333 223 234677888899999999999999998853232333555555444443332111
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 430 ALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+|...-..++. |...+++..|..+|+...+
T Consensus 186 --------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 12222333333 4556788888887766653
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.30 E-value=4.1 Score=33.74 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+.---+..+|.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333335566666666666666666665
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.60 E-value=6.1 Score=45.04 Aligned_cols=81 Identities=7% Similarity=-0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-C--hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHH
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-E--LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLC 524 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~ 524 (641)
|..++..+.+.+.++.+.++-..+.+..+ -.+ + ...|..+...+...|++++|...+-.++ ..--...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~--~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKE--TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455555555555555555554443222 111 1 1135555566666666666666555544 1112234444444
Q ss_pred HHHHcCC
Q 048321 525 ACKIHLN 531 (641)
Q Consensus 525 ~~~~~g~ 531 (641)
..+..|.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 4444333
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.32 E-value=11 Score=39.39 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=46.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK--- 392 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 392 (641)
....+.-.|+++.|++.+... ...|.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455666789999999987754 35677777777766554442 11111110 01 12 2235667777865
Q ss_pred cCCHHHHHHHHhhCCCC
Q 048321 393 CGSIGDARELFYALPEK 409 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~~ 409 (641)
..+..+|.+.|--+..+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 57788888877766433
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.25 E-value=1.1 Score=37.15 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=65.1
Q ss_pred cCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-------hHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 440 LDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL-------DHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 440 ~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+ ..|+. .++..+++++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~--~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSN--NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc--CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34455433 455556677777888888888777664433 23432 24566667777777777777777663
Q ss_pred C-----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 511 P-----IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 511 ~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
. ...+..+..++ . ...... .-..+ +.+.+.-..++.+|.+.|++++|+.+++.++.
T Consensus 90 Lq~~k~l~k~~s~~~~~-~---~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPST-G---NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHhcCCCccccc-c---ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 2 00011011000 0 000000 00111 22235567799999999999999999876543
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.94 E-value=39 Score=36.89 Aligned_cols=249 Identities=10% Similarity=-0.052 Sum_probs=132.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC----Cc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCC--C-----CCHHHHH--HH
Q 048321 287 SMYSKCGDIDSARVLFDGICDR----TR--VSWTAMISGYAQKGDLDEALRLFFAMEAAGE--L-----PDLVTVL--SM 351 (641)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----p~~~t~~--~l 351 (641)
-+....|+.++++.+++..... +. ..-..+.-+....|..+++..++.......- . +....-. .|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888999999887542 21 1223344456667776778888777665321 0 1111111 22
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC--hhHHHHHHHHHHHcCC
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNV--MVCNALIDMYSKCGSIGDARELFYALPE-KI--VVSWTTMIAGCALNGE 426 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~ 426 (641)
--++...++- ++...+..++... .+.. ...-+|...|.-.|+-+....++..+.+ .+ +.-.-.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2233444443 4444444444322 1111 1122333345566777777777665432 22 2223333344557799
Q ss_pred hHHHHHHHHHHHHcCCCCChh-hHH---HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH
Q 048321 427 FVEALDLFHQLMELDLRPNRV-TFL---AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~-t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 502 (641)
.+.+..+.+.+... .+.. -|. .+.-+|+..|+.....+++..+..+. ..++.....+.-++.-.|+.+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~----~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS----NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC----cHHHHHHHHHHHHhhccCCHHH
Confidence 99999898888863 3332 333 33447888899888777888887432 2344444444445555677666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHH--HHHcCC-HHHHHHHHHHhHc
Q 048321 503 ALDFVQSMPIKSDAGIWGTLLCA--CKIHLN-IEIGEYVAYCLFK 544 (641)
Q Consensus 503 A~~~~~~~~~~p~~~~~~~ll~~--~~~~g~-~~~a~~~~~~~~~ 544 (641)
+..+++.+....|+.+-.....+ ....|+ ...+...+.++..
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66777655433344433333222 232333 2556666666653
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.78 E-value=2.4 Score=33.59 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHhhccCCh---HHHHHHHHhCC-CCC-C-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 481 NPELDHYSCMADLLGRKGKL---KEALDFVQSMP-IKS-D-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
.|+..+--.+.-++.+.... .+++.++++.. ..| . ...+-.|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 45555555555556555543 35666666544 234 2 335666777899999999999999999999998643
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.54 E-value=8 Score=28.56 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-++.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777776553 33333333556778999999999999999999999998865 467888888888878887
Q ss_pred cCCCCChhhHHH
Q 048321 440 LDLRPNRVTFLA 451 (641)
Q Consensus 440 ~g~~p~~~t~~~ 451 (641)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.48 E-value=22 Score=33.49 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=80.5
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHH----HHHHHCCCCCChhhHHHHHHHh
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFY----RHMMYNGFRLDVTTVVSLLSSF 254 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~ 254 (641)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...|.++- +...+.++++|..+...++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444556678888998888876432 23455667766655554 5556678888888888777777
Q ss_pred cCCCchH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 048321 255 VCPEALV-QGRLVHSHGIH----YG--FDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQ 322 (641)
Q Consensus 255 ~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 322 (641)
.....-+ .-..+...+++ .| ..-|+.....+...|.+.+++.+|...|-.-.++....+..++.-+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 6554321 12333333333 33 344677888888899999999999888742222222455444444333
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.13 E-value=8.5 Score=28.47 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-++... +.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 56777777777776553 333333334567789999999999999999999999988654 56887888777777777
Q ss_pred cCCCCChhhHHH
Q 048321 440 LDLRPNRVTFLA 451 (641)
Q Consensus 440 ~g~~p~~~t~~~ 451 (641)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 455445543
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.65 E-value=4.5 Score=32.48 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHhhccCCh---HHHHHHHHhCC-CCC-C-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 481 NPELDHYSCMADLLGRKGKL---KEALDFVQSMP-IKS-D-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.|+..+--.+.-++.+..+. .+++.++++.. ..| + -...-.|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 35555555555566666543 35666666644 233 2 22445566789999999999999999999999863
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.40 E-value=3.9 Score=32.25 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-+..+-++.+....+.|++......|.+|.+.+++..|.++|+..+.+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~----~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG----PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC----CchhhHHHHHH
Confidence 3445556666677777889999999999999999999999999999887766 55666776654
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.21 E-value=1.5 Score=43.01 Aligned_cols=60 Identities=12% Similarity=-0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
...++..+...|+.+++...++.++..+|-+-..|..+..+|.+.|+..+|.+.++....
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556667778888888888888888887777888888888888888888887776543
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.02 E-value=8.3 Score=41.08 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
-|...|+++-|+.+-++...-.+ .+..+|..|+.+|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP----seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL----DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCc----hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34567788888888777775322 347778888888888888888888888776
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.93 E-value=9.7 Score=28.14 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
..++|..+-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555442 22222233455678899999999999999999999988765 467888888877777776
Q ss_pred cCCCCCHHHHH
Q 048321 339 AGELPDLVTVL 349 (641)
Q Consensus 339 ~~~~p~~~t~~ 349 (641)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555554
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.50 E-value=10 Score=28.04 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
..++|..|-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555442 22222233455677899999999999999999999988765 466777777777767766
Q ss_pred cCCCCCHHHHH
Q 048321 339 AGELPDLVTVL 349 (641)
Q Consensus 339 ~~~~p~~~t~~ 349 (641)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45554444
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.44 E-value=34 Score=33.96 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCh---hhHHHHHHHHhccCChHHHHHHHHHHHhhh-CCCCCCC--h
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMEL--DLRPNR---VTFLAVLQACTHTGFLEKGWAISIIQYDDK-GISYNPE--L 484 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~p~--~ 484 (641)
....|...+...|++.+|..++..+... |..+.. ..+...+..|...+++.+|..++..+.... .....|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888999999999999998753 222221 255666778899999999999988875211 1001222 3
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..+.+++..+...+++.+|...|.++-
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467888899999999999988877653
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.55 E-value=10 Score=34.26 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
.+.+.|+.++|++....-++. .|... .=..++.-+|-.|+++.|.+-++...+ +.|+...-..+..-+.++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-----l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK-----LFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCchhhHHHHHHHHHHHHH
Confidence 344567777777777666665 45444 333445566777777777766666653 2344322221111111111
Q ss_pred ChHHHHHHHHh--CC-CCCChhHHH-HHHHHH--HHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 499 KLKEALDFVQS--MP-IKSDAGIWG-TLLCAC--KIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 499 ~~~~A~~~~~~--~~-~~p~~~~~~-~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
...+ ++|.. .| ..-.+..|. .|+.+. ...|+.+.|..+-.++++.-|..+.
T Consensus 79 ~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 12222 11 111222243 333333 3457777777777777777665443
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.12 E-value=35 Score=33.08 Aligned_cols=163 Identities=15% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHH---
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSG-GLKD---NVMVCNALIDMYSKCG-SIGDARELFYALPE---KIVVSW--- 414 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~--- 414 (641)
.....+...|.+.|+.++...++...... +.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665554321 1111 2234445566655532 22222333322221 111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH
Q 048321 415 ---TTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-----TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486 (641)
Q Consensus 415 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~ 486 (641)
.-++..|...|++.+|++++.++.+.=-+.|.. .+..-+..|...+++.++...+........ .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~-ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN-AIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc-cCCCCHHH
Confidence 245666777777777777777776532122222 233344456666777777777776653322 01122221
Q ss_pred ----HHHHHHHhh-ccCChHHHHHHHHh
Q 048321 487 ----YSCMADLLG-RKGKLKEALDFVQS 509 (641)
Q Consensus 487 ----~~~l~~~~~-~~g~~~~A~~~~~~ 509 (641)
..+-+-.+. ..++|.+|...|-+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 122223344 56677776666644
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.62 E-value=19 Score=34.97 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE 408 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 408 (641)
.....|...|.+.|+.++..+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677888888888888888777654
No 266
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.62 E-value=12 Score=36.54 Aligned_cols=73 Identities=10% Similarity=-0.030 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh----hhCCCCCCChhHHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD----DKGISYNPELDHYSC 489 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~p~~~~~~~ 489 (641)
...++..+...|++.+|+..++.+.... +-+...+..++.++...|+..+|.+.|+...+ +.| +.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG--~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG--IDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS--CCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHH
Confidence 3445666777788888888887777652 33555778888888888888888888777553 457 7777655443
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.43 E-value=13 Score=27.66 Aligned_cols=63 Identities=3% Similarity=-0.117 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHH
Q 048321 121 FLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 184 (641)
Q Consensus 121 ~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 184 (641)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555666666666788888888888888888888888888888776542 233445665553
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.28 E-value=4.5 Score=36.59 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=75.4
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh----HHHHHHHHHHH
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG----IWGTLLCACKI 528 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~ll~~~~~ 528 (641)
....+.|.++++++....-++..+ -|...-..++.+|+-.|++++|.+-++... ..|+.. .|..++.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P----~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH--
Confidence 345678999999999988886654 678889999999999999999998887765 455433 344444432
Q ss_pred cCCHHHHHHHHHHhHc--cCC---CCCccHH-HHHH--HHHhcCCchHHHHHHHHHHhC
Q 048321 529 HLNIEIGEYVAYCLFK--LEP---HSAAPYV-EMAN--KYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~--~~p---~~~~~~~-~l~~--~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..=++.+. ..| ..+..+. .+.. .....|+.++|.+++.++.+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222 122 2233333 3444 445679999999999998654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.09 E-value=14 Score=31.68 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHHHHhCC-CCCChh---HHHHHHHHHHHcCCHHHHHHHHHHhHc--cCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 501 KEALDFVQSMP-IKSDAG---IWGTLLCACKIHLNIEIGEYVAYCLFK--LEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 501 ~~A~~~~~~~~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
+++...|.... .+.|+. .|-.++..| ..++...+..+|+.+.. +.-..+..|...+..|...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555544 455554 444444443 24556788888887764 455567788999999999999999999998
Q ss_pred HHHhCCC
Q 048321 575 MMKRNQV 581 (641)
Q Consensus 575 ~m~~~~~ 581 (641)
.-.+++.
T Consensus 140 ~GI~~~A 146 (202)
T 3esl_A 140 LGAENNC 146 (202)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8777654
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.66 E-value=13 Score=42.29 Aligned_cols=62 Identities=6% Similarity=-0.113 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc-----cHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA-----PYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
|..++..+.++|.++.+.+..+.+++..+.+.. .|..+.+.+...|+|++|...+-.+++..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 455556666777777777777777665433222 45566677777788888777776655543
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.82 E-value=54 Score=29.52 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhCCCCCCc
Q 048321 23 NSQIREAVNKNEAHKTLLLFRQMKQNDIEPNN 54 (641)
Q Consensus 23 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 54 (641)
++.+...++.|+.+ +++.+.+.|..++.
T Consensus 6 ~~~L~~A~~~g~~~----~v~~Ll~~g~~~~~ 33 (285)
T 1wdy_A 6 NHLLIKAVQNEDVD----LVQQLLEGGANVNF 33 (285)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred chHHHHHHHcCCHH----HHHHHHHcCCCccc
Confidence 34455566777765 44455556655543
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.08 E-value=1.1e+02 Score=31.71 Aligned_cols=325 Identities=10% Similarity=-0.034 Sum_probs=165.1
Q ss_pred cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH--HHH
Q 048321 86 VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL--KSV 163 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a--~~~ 163 (641)
.+.+++......+.. ++.+...--....+....|+..+|......+-..| ......+..++..+...|.+... .+=
T Consensus 83 ~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp HHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 456788888887766 43344444445666778899888888888877665 33455677777777765554332 222
Q ss_pred HHHHHHHc-----------CCCChh-HHHHHHHHhHcCCChhHHHHHHhcccCCCCCch---hHHHHHHHHhcCCCchHH
Q 048321 164 HSFGIHIG-----------VDADVS-VCNTWISSYAKCDDLKMAELVFCGIEERLRTVV---SWNSMVAGCTYGDKFDDS 228 (641)
Q Consensus 164 ~~~~~~~~-----------~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 228 (641)
+..+...| ++++.. ....++..+.+ ...+........ ++.. .+...+.-+.+ .+.+.|
T Consensus 161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~---~~~~~~~~~~~~~~rlar-~d~~~A 233 (618)
T 1qsa_A 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG---ATDFTRQMAAVAFASVAR-QDAENA 233 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC---CCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC---CChhhHHHHHHHHHHHHh-cCHHHH
Confidence 22222211 111110 11122222211 122222222111 1211 11112233333 377899
Q ss_pred HHHHHHHHHCCCCCChhhH----HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 229 LNFYRHMMYNGFRLDVTTV----VSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
...+....+... .+.... ..+.......+...++...+...... ..+.....-.+....+.|+++.|...|+.
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 234 RLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999988865432 233222 23334445555355555555554332 33444444555556678999999999999
Q ss_pred CCCCCc--ch-HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc-h
Q 048321 305 ICDRTR--VS-WTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN-V 380 (641)
Q Consensus 305 ~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 380 (641)
|..... .- .-=+..++...|+.++|..+|..+... . +|-.++.+ .+.|..-.. ......+. .
T Consensus 311 l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~~-------~~~~~~~~~~ 376 (618)
T 1qsa_A 311 LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYEL-------KIDKAPQNVD 376 (618)
T ss_dssp SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCCC-------CCCCCCSCCC
T ss_pred ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCCC-------CCCCCChhHH
Confidence 966422 11 222445677899999999999998642 1 23333322 111110000 00000000 0
Q ss_pred -----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 048321 381 -----MVCNALIDMYSKCGSIGDARELFYALPE-KIVVSWTTMIAGCALNGEFVEALDLFHQ 436 (641)
Q Consensus 381 -----~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (641)
.....-+..+...|....|...+..+.. .+......+.......|.++.++.....
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0111234456677888888777666543 2333333444444566777776655543
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.72 E-value=81 Score=32.99 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHA 154 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 154 (641)
..| ++|-.+.++|++++|.++.++.... +.--...|...+..++..
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 356 5677789999999999999776532 111123566677777643
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.94 E-value=35 Score=27.01 Aligned_cols=61 Identities=3% Similarity=-0.090 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHH
Q 048321 123 ENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 184 (641)
Q Consensus 123 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 184 (641)
-+..+-++.+....+.|++......+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455555566666678888888888888888888888888887766542 333455665543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.00 E-value=41 Score=33.16 Aligned_cols=97 Identities=6% Similarity=-0.068 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHH-
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE------KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAV- 452 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l- 452 (641)
.+...+.+.|.++|+++.|.+.|.++.. .-+..+-..+..+...+++..+...+++....- -.+|...-+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556788888888888888888887754 234567777788888888888888888876421 12232222211
Q ss_pred ---HHHHhccCChHHHHHHHHHHHhhhC
Q 048321 453 ---LQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 453 ---l~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
...+...+++.+|-+.|-.+...+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1133456778888877777664443
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.19 E-value=29 Score=28.28 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=50.5
Q ss_pred HHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc--CCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 501 KEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL--EPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 501 ~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+.+...|.... .+.|+.-...-+..-....+ +..+|+.+... .-..+..|...+..+...|++.+|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555665544 45555433332222222233 67777777654 44567789999999999999999999998877
Q ss_pred hCCC
Q 048321 578 RNQV 581 (641)
Q Consensus 578 ~~~~ 581 (641)
+++.
T Consensus 129 ~~~A 132 (152)
T 4a1g_A 129 QNQA 132 (152)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7654
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.28 E-value=8.4 Score=38.24 Aligned_cols=62 Identities=8% Similarity=-0.065 Sum_probs=34.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
+...+..-+.+.|+++.|.+.|.++..... +..--...+-..+.++...+++..|...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI-STGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455566666666666666666666663321 11222444555555555666666665555554
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.78 E-value=53 Score=28.73 Aligned_cols=87 Identities=15% Similarity=-0.012 Sum_probs=47.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH--HHHHHHHhHc
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVT--VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV--CNTWISSYAK 188 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~ 188 (641)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445667888887777777776665554332 112333344455554 4444555665544321 1233445556
Q ss_pred CCChhHHHHHHhccc
Q 048321 189 CDDLKMAELVFCGIE 203 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~ 203 (641)
.|+.+-+..+++...
T Consensus 89 ~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 89 HRSPTCLRALLDSAA 103 (241)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCC
Confidence 777777777776654
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.55 E-value=45 Score=30.04 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=8.7
Q ss_pred HHhcCCHHHHHHHHhc
Q 048321 289 YSKCGDIDSARVLFDG 304 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~ 304 (641)
.+..|+.+-...+++.
T Consensus 155 A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3445666655555554
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.51 E-value=42 Score=27.71 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=49.4
Q ss_pred HHHHHHHHhCC-CCCChh---HHHHHHHHHHHcCCHHHHHHHHHHhHc--cCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 501 KEALDFVQSMP-IKSDAG---IWGTLLCACKIHLNIEIGEYVAYCLFK--LEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 501 ~~A~~~~~~~~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
+.+...|.... .+.|+. +|-.++..| ++ ...+|+.+.. +.-..+..|...+..|-..|++.+|.++++
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455554444 455554 344344333 44 5556766654 445567789999999999999999999998
Q ss_pred HHHhCCC
Q 048321 575 MMKRNQV 581 (641)
Q Consensus 575 ~m~~~~~ 581 (641)
.-.+++.
T Consensus 121 ~Gi~~~A 127 (164)
T 2wvi_A 121 EGIQQKA 127 (164)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8777654
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.31 E-value=78 Score=26.78 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=20.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKG 324 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 324 (641)
+|..+-...+..+.+.+..+....+.+.+..++...-...+.++...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 344444444444444444333333444444444333333334444444
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.39 E-value=87 Score=26.72 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLM 438 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (641)
++..+-...+.++.+.|..+....+...+..++...-...+.++...+. .++...+.++.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 4444444445555544443333333333333444444444444444443 33444444443
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.50 E-value=94 Score=26.23 Aligned_cols=16 Identities=19% Similarity=-0.004 Sum_probs=6.1
Q ss_pred chhHHHHHHHHHHhcC
Q 048321 278 DVSVINTLISMYSKCG 293 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g 293 (641)
+..+-...+.++.+.+
T Consensus 120 ~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIG 135 (201)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333334443333
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.92 E-value=1.1e+02 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=7.0
Q ss_pred chhHHHHHHHHHHhcCC
Q 048321 278 DVSVINTLISMYSKCGD 294 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~ 294 (641)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33344444444444443
No 285
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=52.66 E-value=43 Score=29.32 Aligned_cols=22 Identities=0% Similarity=-0.147 Sum_probs=12.2
Q ss_pred HHHhcCcCchHHHHHHHHHHHH
Q 048321 352 ISGCGQSGALELGKWFDNYACS 373 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~ 373 (641)
+......|+.+.+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555666666666655544
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.17 E-value=1.5e+02 Score=27.44 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhCCCCCCccc----HHHHHHHHhccCCchHHhHH
Q 048321 23 NSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLT----FPFIAKACAKLSDLIYSQMI 76 (641)
Q Consensus 23 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~~~~i 76 (641)
++.+..-++.|+.+... .+++.|..||... ++.|.-+ +..|+.+-.+.+
T Consensus 26 ~t~L~~Av~~g~~~~V~----~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~~iv~~L 78 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNA-VQMSREDIVELL 78 (337)
T ss_dssp HHHHHHHHHTTCHHHHH----HHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHH----HHHHCCCCCCccCCCCCcCHHHHH-HHcCCHHHHHHH
Confidence 45555557888866544 4445677666432 2333333 455665443333
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.15 E-value=1.2e+02 Score=29.68 Aligned_cols=141 Identities=10% Similarity=0.007 Sum_probs=64.2
Q ss_pred CChhHHHHHhhccCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHHHH
Q 048321 89 DRLDCAYKIFDEMAVRD---VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT--VMGLTQAAIHAKHLSLLKSV 163 (641)
Q Consensus 89 ~~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~ 163 (641)
|+++-...+++.-..++ .... +.+...+..|+.+-+..+++ .|..++... -.+.+...+..|+.+ +
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~----~ 95 (437)
T 1n11_A 25 GHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTN----M 95 (437)
T ss_dssp TCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCHH----H
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHH----H
Confidence 45555555555433222 2222 33444556677655444443 443333211 122334444556654 4
Q ss_pred HHHHHHHcCCCChhH--HHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 164 HSFGIHIGVDADVSV--CNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 164 ~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
.+.+++.|..++... ..+.+...++.|+.+.+..+++.-... ..+...++.+ ...+..|+. ++++.+.+.|.
T Consensus 96 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~ 170 (437)
T 1n11_A 96 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL-HVAAKYGKV----RVAELLLERDA 170 (437)
T ss_dssp HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCH----HHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHcCCH----HHHHHHHhCCC
Confidence 444555565544321 122344556677777777777654331 1222223333 233445553 34445555555
Q ss_pred CCC
Q 048321 241 RLD 243 (641)
Q Consensus 241 ~p~ 243 (641)
.++
T Consensus 171 ~~~ 173 (437)
T 1n11_A 171 HPN 173 (437)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 288
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.79 E-value=1.5e+02 Score=26.72 Aligned_cols=244 Identities=9% Similarity=-0.107 Sum_probs=0.0
Q ss_pred HHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC-chHHHHHHHHHHH-HhC
Q 048321 197 LVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE-ALVQGRLVHSHGI-HYG 274 (641)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~-~~g 274 (641)
.++..+.. +|...-...+.++.+.| ..+++..+..+... ++...-...+.++...+ .......++..+. ..-
T Consensus 27 ~L~~~L~~--~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~ 100 (280)
T 1oyz_A 27 ELFRLLDD--HNSLKRISSARVLQLRG-GQDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL 100 (280)
T ss_dssp HHHHHTTC--SSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHccC-CchHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHh
Q ss_pred CCCchhHHHHHHHHHHhcC------CHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 048321 275 FDLDVSVINTLISMYSKCG------DIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTV 348 (641)
Q Consensus 275 ~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 348 (641)
-.++..+-...+.++.+.+ ...-...+...+..++...-...+.++...|+ ..+...+..+.. .++...-
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHH
Q ss_pred HHHHHHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 048321 349 LSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEF 427 (641)
Q Consensus 349 ~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 427 (641)
...+.++...+ ....+...+..+.+ .++..+-...+.++.+.|+......+...+..++ .-...+.++.+.|.
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~- 250 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD- 250 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
..++..+.++... .++.......+.+..+
T Consensus 251 ~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.30 E-value=84 Score=29.91 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEKI---VVSWTTMIAGCALNGE--FVEALDLFHQLMELDLRPN 445 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 445 (641)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4667888888999999999999998763 2344555555544332 3457777887877665443
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.54 E-value=96 Score=29.50 Aligned_cols=26 Identities=8% Similarity=0.275 Sum_probs=21.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMR 133 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~ 133 (641)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45677888888899999998888874
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.43 E-value=32 Score=30.78 Aligned_cols=89 Identities=11% Similarity=-0.031 Sum_probs=47.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhh-------HHHHHHHHh--ccCChhHHHHHHHHHHHHc---------CCC
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVT-------VMGLTQAAI--HAKHLSLLKSVHSFGIHIG---------VDA 174 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~ 174 (641)
+...++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-++.+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3345667888888888887777776555332 233443332 5577776666665543311 000
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhc
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCG 201 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~ 201 (641)
......+.+...+..|+.+-+..+++.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 000112233444556776666666654
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.56 E-value=70 Score=32.17 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh--H-HHHHHHHhhccCChHHHHHHHHhCC
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD--H-YSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~--~-~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..++.++..|.+.+.+++|..+..... ++....++.. . +-.++..+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 366777778888888888888877664 2200112211 2 2344566777788888888777644
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.39 E-value=71 Score=26.87 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=59.9
Q ss_pred CCChhHHHHHhhccC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHH
Q 048321 88 CDRLDCAYKIFDEMA----VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT--VMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~ 161 (641)
.|+.+....++..-. .+|..-++.|.. .++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-++
T Consensus 15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 89 (201)
T 3hra_A 15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILA 89 (201)
T ss_dssp TTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred hccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 356666666665443 223333334333 34555544 4444445565544322 112222333345544333
Q ss_pred HHHHHHHHHcCCCChh--HHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 048321 162 SVHSFGIHIGVDADVS--VCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY 237 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (641)
.+++. .+..++.. ...+.+...+..|+.+-+..+++.-... .+|..-++.+..+.........-.++++.+.+
T Consensus 90 ~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 90 YMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166 (201)
T ss_dssp HHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred HHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence 33321 12111111 0111233344556666555555543111 23333334444333322223333455555555
Q ss_pred CCCCCC
Q 048321 238 NGFRLD 243 (641)
Q Consensus 238 ~g~~p~ 243 (641)
.|..++
T Consensus 167 ~ga~~~ 172 (201)
T 3hra_A 167 NGADQS 172 (201)
T ss_dssp TTCCTT
T ss_pred CCCCCC
Confidence 554443
No 294
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.68 E-value=1.3e+02 Score=25.49 Aligned_cols=61 Identities=16% Similarity=0.007 Sum_probs=35.5
Q ss_pred hHHHHHHHHhCCCCCChh--HH-----HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 500 LKEALDFVQSMPIKSDAG--IW-----GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
++.|+.+++.+...-|.. .. -..+..|.+.|.+++|.+++++.++-+|.+...-.-|..+-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 467777777776222211 11 22346799999999999999999988776554444444333
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.58 E-value=96 Score=26.00 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=69.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH--HHHHHHHhHcCCChh
Q 048321 116 FAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV--CNTWISSYAKCDDLK 193 (641)
Q Consensus 116 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~ 193 (641)
.+..|+.+....++..-...--..|..-.+. +...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 4567787777766653220000122222223 33344556654 4445556666554321 123344556678888
Q ss_pred HHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCC-CCC---ChhhHHHHHHHhcCCCchHHHHHHH
Q 048321 194 MAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNG-FRL---DVTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 194 ~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
-+..+++.-... ..+...++.+. ..+..|+.+ +++.+.+.| ..+ |..-.+.+..++........-.++.
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSHH-HHHHTTCHH----HHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 877777543321 22322233333 233455543 334444444 222 2222334443333222223335566
Q ss_pred HHHHHhCCCCc
Q 048321 268 SHGIHYGFDLD 278 (641)
Q Consensus 268 ~~~~~~g~~~~ 278 (641)
+.+++.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 66666665544
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.01 E-value=1.8e+02 Score=24.93 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
.|-..+..+ ..+...++.++|..|...|+--... -|......+...|++++|.++|+.-++
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 454444433 1333557777777777777665554 455556666777777777777777763
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.98 E-value=2.2e+02 Score=26.79 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=16.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQAD 140 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~ 140 (641)
+...+..|+.+-+..+++.-...|..|+
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 3444567777777777666554444433
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.95 E-value=1.6e+02 Score=27.21 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=21.8
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45678888888999999999998865
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.90 E-value=86 Score=27.75 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=44.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--cCCCC----ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 417 MIAGCALNGEFVEALDLFHQLME--LDLRP----NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
-+..+..+.++++|++++++... .++++ +.......+..-.....-.-+..+.+.+. ..++.......
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~------~~~~~~~~r~~ 97 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL------SSNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH------TCSSHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHH
Confidence 35566677777777777776554 22222 11222222222222111122223333332 22455556666
Q ss_pred HHHhhccCChHHHHHHHHhC
Q 048321 491 ADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~ 510 (641)
+..+.|.|+.++|.++|-+.
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 77888888888888887553
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.65 E-value=67 Score=28.57 Aligned_cols=53 Identities=8% Similarity=-0.026 Sum_probs=32.2
Q ss_pred HHHHHhCCChhHHHHHHHHhHhCCCCCCccc-------HHHHHHHHh--ccCCchHHhHHHH
Q 048321 26 IREAVNKNEAHKTLLLFRQMKQNDIEPNNLT-------FPFIAKACA--KLSDLIYSQMIHG 78 (641)
Q Consensus 26 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~~~~i~~ 78 (641)
+...++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+..+.+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~ 70 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence 4445677888888888888877777666433 234444432 4555555544444
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.57 E-value=1.9e+02 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=21.7
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhCCCCCCcc
Q 048321 25 QIREAVNKNEAHKTLLLFRQMKQNDIEPNNL 55 (641)
Q Consensus 25 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 55 (641)
.+...++.|+.+....+++.+.+.|..++..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 42 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIY 42 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Confidence 3455567788888888888777777666543
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.53 E-value=1.6e+02 Score=26.72 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=9.1
Q ss_pred HHhHcCCChhHHHHHHhc
Q 048321 184 SSYAKCDDLKMAELVFCG 201 (641)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~ 201 (641)
...+..|+.+-+..+++.
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455555555555544
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.39 E-value=32 Score=25.49 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=31.6
Q ss_pred CChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHH
Q 048321 89 DRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLR 127 (641)
Q Consensus 89 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 127 (641)
.+.+.|+++++.++.+...+|..++.++...|+..-|-.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999998888899999999987777665543
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.14 E-value=1.1e+02 Score=26.98 Aligned_cols=23 Identities=4% Similarity=-0.123 Sum_probs=18.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 048321 112 MLVGFAQMGFLENVLRLFYNMRL 134 (641)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~m~~ 134 (641)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46678888899999998887654
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.01 E-value=1.3e+02 Score=27.25 Aligned_cols=19 Identities=0% Similarity=-0.127 Sum_probs=9.8
Q ss_pred HHcCCHHHHHHHHHHhHcc
Q 048321 527 KIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~ 545 (641)
...|+.+....+++.-...
T Consensus 169 ~~~g~~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 169 IKNGHVDMMILLLDYMTST 187 (285)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcChHHHHHHHHHcCCCC
Confidence 3455666555555544333
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.34 E-value=93 Score=24.39 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEKI---VVSWTTMIAGCALNGE--FVEALDLFHQLMELDLRP 444 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 444 (641)
.+.++.-|...|+.++|...++++..|. .+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567777888888888888888887652 2344444555544432 355667777777665433
No 307
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=34.40 E-value=77 Score=23.05 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=30.9
Q ss_pred CCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHH
Q 048321 88 CDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENV 125 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a 125 (641)
....+.|.++++.++.+....|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 46788899999999888888899999988887765444
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.91 E-value=87 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC
Q 048321 283 NTLISMYSKCGDIDSARVLFDGICD 307 (641)
Q Consensus 283 ~~li~~~~~~g~~~~A~~~~~~~~~ 307 (641)
+.++.-|...|+.++|.+.++++..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~ 35 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEV 35 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4455555555666666666655543
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.88 E-value=2.1e+02 Score=24.50 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=10.7
Q ss_pred HhCCChhHHHHHHHHHHHcCC
Q 048321 321 AQKGDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~ 341 (641)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 445555555555555555443
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.50 E-value=1.8e+02 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=10.2
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 048321 113 LVGFAQMGFLENVLRLFYN 131 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~ 131 (641)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444555666655555544
No 311
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.82 E-value=63 Score=26.00 Aligned_cols=65 Identities=9% Similarity=-0.062 Sum_probs=48.0
Q ss_pred ccCchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccC
Q 048321 2 AVSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLS 68 (641)
Q Consensus 2 a~~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 68 (641)
-.++..+.+...+-+.+. .=..++..+...+ +-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 2 ~~~~~~~~L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 2 VSTDWKSDLRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp -CTTHHHHHHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 346677778777766666 5667788877777 8899999999999887777777666666665544
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.03 E-value=81 Score=25.63 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCC
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEKI---VVSWTTMIAGCALNGE--FVEALDLFHQLMELDLR 443 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 443 (641)
.+.++.-|...|+.++|...++++..|. .+....+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567777888888888888888887652 2344444455544322 34566677777766543
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.95 E-value=75 Score=31.96 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCCCCCCh------hHHH-HHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA------GIWG-TLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
...+++++..|...+.++.|..++.+..++... ..|. .+.......+++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 445777788888888888888888887643221 1221 123345567788888888888877776543
No 314
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=29.77 E-value=3.7e+02 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.+...+++++.+|+++.|.++++.+.
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~lp 363 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSLP 363 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45577889999999999999998654
No 315
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.46 E-value=2.7e+02 Score=23.78 Aligned_cols=18 Identities=6% Similarity=0.052 Sum_probs=8.9
Q ss_pred HHhHcCCChhHHHHHHhc
Q 048321 184 SSYAKCDDLKMAELVFCG 201 (641)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~ 201 (641)
...+..|+.+-+..+++.
T Consensus 114 ~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 114 HLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCHHHHHHHHHhc
Confidence 344445555555555443
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.38 E-value=4.4e+02 Score=26.01 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=71.8
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 048321 359 GALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
.+.+.|.++ +.+.|++--...|..-.+.+...|++++|.++--..+. ++..|.+.+-..=...|+..--+.+|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 344444333 34556665555666667777888888888888776654 444444444333333455566666677
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 436 QLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
.+.+.| +.+..-=.-+.+.-..+|+.+-..+.+. +.. +..+.+. +|+. +..+..-|+.+|.+..
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~----e~K--L~~SEeL----GDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK----EDK--LECSEEL----GDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH----HTC--SCCCHHH----HHHH-HHHCSHHHHHHHHHHC
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh----cCC--ccccHHh----Hhhh-hhcCHHHHHHHHHHcC
Confidence 666665 4444322233343344455444333322 222 4444332 2222 3445556666665544
No 317
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.25 E-value=1.2e+02 Score=21.12 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=29.5
Q ss_pred HHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHH
Q 048321 196 ELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHM 235 (641)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (641)
..++++++..+|++.||+-+...+-+.--..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4577888888889999998877666655566666666655
No 318
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.00 E-value=4.1e+02 Score=25.55 Aligned_cols=119 Identities=12% Similarity=0.030 Sum_probs=55.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChh--HHHHHHHHhHc
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVT--VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVS--VCNTWISSYAK 188 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 188 (641)
+...+..|+.+-+. .+.+.|..|+... -.+.+...+..|+.+.+..++ +.+..++.. ...+.+...+.
T Consensus 84 L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~ 155 (437)
T 1n11_A 84 LHCAARIGHTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAK 155 (437)
T ss_dssp HHHHHHHTCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHH
Confidence 34445667665443 3444455444321 122334445566666555444 344332211 11223455667
Q ss_pred CCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCCh
Q 048321 189 CDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDV 244 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 244 (641)
.|+.+-+..+++.-... ..+...++.|. ..+..|+. ++++.+.+.|..|+.
T Consensus 156 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~ 207 (437)
T 1n11_A 156 YGKVRVAELLLERDAHPNAAGKNGLTPLH-VAVHHNNL----DIVKLLLPRGGSPHS 207 (437)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCSSCCCHHH-HHHHTTCH----HHHHHHGGGTCCSCC
T ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHhCCCCCCC
Confidence 78888777777653331 12222233333 33444553 455555666655543
No 319
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.98 E-value=43 Score=22.03 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=18.5
Q ss_pred cCChhHHHHHHHHHHHcC-CCCChh
Q 048321 119 MGFLENVLRLFYNMRLVG-IQADFV 142 (641)
Q Consensus 119 ~g~~~~a~~l~~~m~~~g-~~p~~~ 142 (641)
.-+++.|+..|.++...| |+|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 458899999999998766 666543
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.96 E-value=3e+02 Score=23.51 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHH---HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc-----hHHHHHHHHHHHHcCC
Q 048321 315 AMISGY---AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA-----LELGKWFDNYACSGGL 376 (641)
Q Consensus 315 ~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 376 (641)
.+|+++ .+..+.+.|+-.+-+|++.| .|....=..++.+....|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344554 45688999999999999999 7776666666666655553 3344444555555554
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.93 E-value=1.1e+02 Score=24.74 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC
Q 048321 283 NTLISMYSKCGDIDSARVLFDGIC 306 (641)
Q Consensus 283 ~~li~~~~~~g~~~~A~~~~~~~~ 306 (641)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 322
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.85 E-value=1e+02 Score=24.40 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHHhc
Q 048321 290 SKCGDIDSARVLFDG 304 (641)
Q Consensus 290 ~~~g~~~~A~~~~~~ 304 (641)
+..|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344555555555544
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.80 E-value=65 Score=25.87 Aligned_cols=64 Identities=9% Similarity=-0.093 Sum_probs=45.5
Q ss_pred chhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC
Q 048321 5 SLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSD 69 (641)
Q Consensus 5 ~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 69 (641)
.+.+.+...+.+.+. .=-.++..+...+.+-.|.++++.+++.+...+..|.-..|+.+...|-
T Consensus 8 ~~~~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 8 EALETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344555555555555 5567788888888888999999999988777777776666776665553
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.55 E-value=2.7e+02 Score=22.89 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 429 EALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
++.++|..|...|+--... -|......+...|++.+|.++|..-++
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3666778787777666554 455556666777788888888777774
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.51 E-value=2.6e+02 Score=22.66 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC
Q 048321 123 ENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD 175 (641)
Q Consensus 123 ~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 175 (641)
+.+.++|..|...||.-... -|..-...+...|++++|.+++..-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44888899998888665543 466666777778888888888888888776663
No 326
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.49 E-value=2.9e+02 Score=23.50 Aligned_cols=54 Identities=4% Similarity=-0.130 Sum_probs=25.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+......|+.+....+++.-...+..+..... -...-.+.|+.+-+.-+++...
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhh
Confidence 44445677887777776654333222222111 1223345566555554544433
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.28 E-value=1.8e+02 Score=26.89 Aligned_cols=69 Identities=1% Similarity=-0.091 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCc--hHHHHHHHHHHHHhCCCCchhH
Q 048321 212 WNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEA--LVQGRLVHSHGIHYGFDLDVSV 281 (641)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~ 281 (641)
.+.++.-|...|+.++|.+.++++..-.+. .......+..+.-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456778888888999999988888421110 11222333344444322 3455666666666665444333
No 328
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=25.45 E-value=3.1e+02 Score=27.65 Aligned_cols=69 Identities=10% Similarity=-0.128 Sum_probs=41.8
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHH----HH-HhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 512 IKSDAGIWGTLLCACKIHLNIEIGEYV----AY-CLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 512 ~~p~~~~~~~ll~~~~~~g~~~~a~~~----~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
...|......|..-+..+|..++-+++ ++ -+.+..|++......|-.-|.+.|++-+|.+++-.+-..+
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 344555555666666666654433222 11 1112346666677788888999999999999998887663
No 329
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.01 E-value=3.2e+02 Score=23.25 Aligned_cols=46 Identities=9% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCChhh--HHHHHHHhcCCCchHHHHHHHHHHHHhCC
Q 048321 230 NFYRHMMYNGFRLDVTT--VVSLLSSFVCPEALVQGRLVHSHGIHYGF 275 (641)
Q Consensus 230 ~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 275 (641)
++++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|.
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 34444555565544322 12334444556666666666666666654
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.87 E-value=1.9e+02 Score=23.17 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=22.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF 461 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 461 (641)
++..+...+..-.|.++++.+.+.+...+..|....|..+...|.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 334444444445555555555555444445555555555555443
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.71 E-value=1.4e+02 Score=28.22 Aligned_cols=16 Identities=0% Similarity=-0.182 Sum_probs=8.3
Q ss_pred HHhcCCHHHHHHHHhh
Q 048321 390 YSKCGSIGDARELFYA 405 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~ 405 (641)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445555555555543
No 332
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.39 E-value=3.2e+02 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 428 VEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+++..+|..|...|+--... -|......+...|++.+|..+|+.-++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46667777777777665554 455556666777778888777777764
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.35 E-value=1.5e+02 Score=23.67 Aligned_cols=60 Identities=3% Similarity=-0.028 Sum_probs=27.9
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh
Q 048321 132 MRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 132 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 192 (641)
|.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4445554443322 22233333334445556666655554444444444445555555543
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.10 E-value=72 Score=20.98 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHH-hccCC
Q 048321 35 AHKTLLLFRQMKQNDIEPNNLTFPFIAKAC-AKLSD 69 (641)
Q Consensus 35 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~ 69 (641)
.++|.+.|.+|++..-.++.-||..+++.+ ++-..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 468899999987654334567899999988 55443
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.10 E-value=6.8e+02 Score=27.57 Aligned_cols=113 Identities=6% Similarity=-0.144 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChh---
Q 048321 444 PNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAG--- 517 (641)
Q Consensus 444 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~--- 517 (641)
.....+..++..|...|.++-+.++ ..- .+.++..--.++.+|...|++++|.+.|+++. ..++..
T Consensus 808 ~~~~~~~~l~~~L~~~~~~~~a~eL------~~~--~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~ 879 (950)
T 4gq2_M 808 TENDLVTELVEKLFLFKQYNACMQL------IGW--LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV 879 (950)
T ss_dssp SSCCHHHHHHHHHHHTTCHHHHHHH------GGG--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG
T ss_pred CCCccHHHHHHHHHHhcHHHHHHHH------Hhh--cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc
Q ss_pred -------------------HHHHHHHHHHHcCCHHHHHHHHHHhH-ccCCCCCc----cHHHHHHHHHhcC
Q 048321 518 -------------------IWGTLLCACKIHLNIEIGEYVAYCLF-KLEPHSAA----PYVEMANKYALGG 564 (641)
Q Consensus 518 -------------------~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~----~~~~l~~~~~~~g 564 (641)
-|..++..+-+++-++.+.+..+.++ .+.++++. .|..+....+..|
T Consensus 880 ~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.89 E-value=4e+02 Score=24.96 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCC
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICDRTR---VSWTAMISGYAQKG-DLDEALRLFFAMEAAGEL 342 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~ 342 (641)
...++.-|...|++++|...++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 45677788888999999999998865531 12222222222211 123455666666665543
No 337
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.81 E-value=49 Score=25.52 Aligned_cols=72 Identities=7% Similarity=-0.022 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhCCC---hhHHH----HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChh
Q 048321 21 QWNSQIREAVNKNE---AHKTL----LLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLD 92 (641)
Q Consensus 21 ~~~~li~~~~~~~~---~~~A~----~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 92 (641)
+++.++..|...-. .+++. .+|+.+....+.|+...--.-|..+...+++..|..+|..+....+..++.+-
T Consensus 21 ~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~~E~~~Wm 99 (118)
T 2yru_A 21 PLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWM 99 (118)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSTHHHHTTTH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCcHHHHHhHH
Confidence 56777776654322 12222 25666667677666544333344455678899999998887765443344443
No 338
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.92 E-value=3e+02 Score=26.03 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=38.1
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCC-CCChhcHHHHHHHHHH
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY-HAESELTYPVLDCLAL 621 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~ 621 (641)
+.-.|..++..|.+.|++.||.+.+-...+- .++.+ .-+.++||.++-++..
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V---------------------i~~YNY~reDeEIYKEf~eIAn 347 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYV---------------------AGKYNYSKDDEEMYKEFHEIAN 347 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTSCCCGGGHHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHH---------------------HHHcCCCccHHHHHHHHHHHHH
Confidence 4667889999999999999999999776541 22222 2456799988766543
No 339
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.85 E-value=2.8e+02 Score=26.73 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=38.3
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCC-CCChhcHHHHHHHHHH
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY-HAESELTYPVLDCLAL 621 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~ 621 (641)
+.-.|..++..|.+.+++.||.+.+-...+ +.++.+ .-+.++||.++-++..
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~---------------------Vi~~YNY~reDeEIYKEf~eIAn 369 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT---------------------VIQDYNYCREDEEIYKEFFEVAN 369 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHTTSCCCGGGHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH---------------------HHHHcCCCcchHHHHHHHHHHHH
Confidence 466788999999999999999999877654 122223 3457899988766543
No 340
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.81 E-value=4.6e+02 Score=24.30 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=52.7
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhcCCHHHHHHHHhc
Q 048321 230 NFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMY----SKCGDIDSARVLFDG 304 (641)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~ 304 (641)
++++.+.+.|+.|...++..++..+++.=.++.+..+++.+...|...-..+.-+++..+ .++.+.++....+..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 566777788998988888999988888878999999999998887542222333333322 234467777777765
No 341
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.68 E-value=90 Score=22.95 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=24.5
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 048321 394 GSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEA 430 (641)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 430 (641)
.+.+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566777777777777777777777777655654444
No 342
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.56 E-value=3.1e+02 Score=22.24 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=9.8
Q ss_pred hhHHHHHHHhcCCCchHHHHHHH
Q 048321 245 TTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 245 ~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
.+|.-++..+.+...+-.....+
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~ 179 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLF 179 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHh
Confidence 34444444444444444443333
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.56 E-value=3.5e+02 Score=22.89 Aligned_cols=20 Identities=5% Similarity=-0.139 Sum_probs=12.8
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 048321 25 QIREAVNKNEAHKTLLLFRQ 44 (641)
Q Consensus 25 li~~~~~~~~~~~A~~~~~~ 44 (641)
.+...++.|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35555667777776666654
No 344
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.15 E-value=3.2e+02 Score=25.97 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICDR 308 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 308 (641)
...++.=|...|++++|...++++..|
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 344555555556666666655555444
No 345
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.93 E-value=3.8e+02 Score=23.03 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=42.9
Q ss_pred HHHHHHHH---HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC-----chHHHHHHHHHHHHcCC
Q 048321 313 WTAMISGY---AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSG-----ALELGKWFDNYACSGGL 376 (641)
Q Consensus 313 ~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~ 376 (641)
.-.+|+++ .+..+.+.|+-.+-+|++.|-.|....=..++.+.-..| -+..|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33455555 356889999999999999998888777666776665544 23444555555555554
No 346
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.36 E-value=3.7e+02 Score=22.87 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=32.4
Q ss_pred HHHHH---HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC
Q 048321 316 MISGY---AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSG 359 (641)
Q Consensus 316 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 359 (641)
+|+++ .+..+.+.|+-.+-+|++.|-.|..+.=..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44444 456889999999999999998887776666666655444
No 347
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.92 E-value=2.1e+02 Score=19.74 Aligned_cols=61 Identities=7% Similarity=0.171 Sum_probs=36.0
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccC-ChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh
Q 048321 131 NMRLVGIQADFVTVMGLTQAAIHAK-HLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 131 ~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 192 (641)
.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556676665543 34555555543 4556677777777665555566655666666665543
No 348
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.63 E-value=59 Score=26.81 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred ccCchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhccC
Q 048321 2 AVSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQN--DIEPNNLTFPFIAKACAKLS 68 (641)
Q Consensus 2 a~~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~ 68 (641)
+++.+.+.+...+.+.+. .=..++..+...+.+-.|.++++.+.+. +...+..|.-.-|+.+...|
T Consensus 16 ~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 16 LLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
No 349
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.59 E-value=1.7e+02 Score=29.33 Aligned_cols=73 Identities=7% Similarity=0.044 Sum_probs=33.9
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
.+|+|+.--...++.|...|..+. .+.+...|+.|.-.....|+.-.|.-.+-+.+-.....+.+...+..++
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344444444445555555555543 2223335555554444455555555555544443322344444444443
No 350
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.37 E-value=98 Score=15.60 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=12.2
Q ss_pred hhcHHHHHHHHHHHHHH
Q 048321 609 SELTYPVLDCLALHSRE 625 (641)
Q Consensus 609 ~~~~~~~l~~l~~~~~~ 625 (641)
..+.|..|++|...+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678888888776654
No 351
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.32 E-value=80 Score=22.79 Aligned_cols=26 Identities=0% Similarity=-0.066 Sum_probs=19.6
Q ss_pred hhcHHHHHHHHHHHHHHccccCCCCC
Q 048321 609 SELTYPVLDCLALHSREEAYSSHLKW 634 (641)
Q Consensus 609 ~~~~~~~l~~l~~~~~~~g~~~~~~~ 634 (641)
...|...++.-..+++..||.||.=+
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 34566677777789999999999643
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.10 E-value=2e+02 Score=23.07 Aligned_cols=62 Identities=5% Similarity=-0.024 Sum_probs=34.1
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChh
Q 048321 131 NMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLK 193 (641)
Q Consensus 131 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 193 (641)
.|.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556655544322 334444444455667777777777665556655555566666666543
Done!