BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048322
         (498 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
          Intracellular Mla Immune Receptors Defines A Minimal
          Functional Module For Triggering Cell Death
          Length = 115

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 16 DEAVKMWLDELQDLAYDAEDILDGFGTQA 44
          D   K+W DE+++L+Y  ED++D F  Q 
Sbjct: 54 DSQDKLWADEVRELSYVIEDVVDKFLVQV 82


>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
           Trigonal- Bipyramidal Intermediate In A
           Phosphoryl-Transfer Superfamily.
 pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
           Trigonal- Bipyramidal Intermediate In A
           Phosphoryl-Transfer Superfamily
          Length = 261

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 24/133 (18%)

Query: 55  DSTGQVLSF----IPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGAS 110
           D  G ++SF    IP+S    A+ + ++ G KI   T R + +  +  EL  + +  G  
Sbjct: 8   DIAGTLVSFETHRIPSS-TIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYI 66

Query: 111 SPTAA----AHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHV 166
           +   A      +    S++P E   A  AA CEK  +                + VEEH 
Sbjct: 67  TMNGAYCFVGEEVIYKSAIPQEEVKAM-AAFCEKKGVPC--------------IFVEEHN 111

Query: 167 LDILQPHKCIKKV 179
           + + QP++ +KK+
Sbjct: 112 ISVCQPNEMVKKI 124


>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
           Diversification: Structure And Function Analysis Of The
           Had Subclass Iib Sugar Phosphatase Bt4131
 pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
           Trigonal- Bipyramidal Intermediate In A
           Phosphoryl-transfer Superfamily.
 pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
           Trigonal- Bipyramidal Intermediate In A
           Phosphoryl-transfer Superfamily
          Length = 261

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 24/133 (18%)

Query: 55  DSTGQVLSF----IPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGAS 110
           D  G ++SF    IP+S    A+ + ++ G KI   T R + +  +  EL  + +  G  
Sbjct: 8   DIDGTLVSFETHRIPSS-TIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYI 66

Query: 111 SPTAA----AHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHV 166
           +   A      +    S++P E   A  AA CEK  +                + VEEH 
Sbjct: 67  TMNGAYCFVGEEVIYKSAIPQEEVKAM-AAFCEKKGVPC--------------IFVEEHN 111

Query: 167 LDILQPHKCIKKV 179
           + + QP++ +KK+
Sbjct: 112 ISVCQPNEMVKKI 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,600,622
Number of Sequences: 62578
Number of extensions: 587642
Number of successful extensions: 1310
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 3
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)