Query 048322
Match_columns 498
No_of_seqs 376 out of 3277
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 3.4E-20 7.4E-25 207.9 15.6 307 133-465 550-908 (1153)
2 PLN03210 Resistant to P. syrin 99.8 1.7E-19 3.7E-24 202.3 17.7 259 165-464 625-944 (1153)
3 PLN00113 leucine-rich repeat r 99.7 4.7E-18 1E-22 190.1 11.0 111 135-262 254-366 (968)
4 PLN00113 leucine-rich repeat r 99.7 6.3E-18 1.4E-22 189.0 10.4 76 381-462 499-583 (968)
5 KOG0444 Cytoskeletal regulator 99.6 2.8E-18 6.1E-23 167.8 -5.6 259 136-464 98-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.6 4.7E-17 1E-21 159.4 -4.9 281 135-460 49-349 (1255)
7 KOG4194 Membrane glycoprotein 99.5 3.2E-15 7E-20 145.6 3.0 145 198-356 148-303 (873)
8 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.3E-18 144.4 13.9 249 141-461 201-456 (788)
9 KOG4194 Membrane glycoprotein 99.5 2.2E-14 4.8E-19 140.0 4.4 257 143-443 80-356 (873)
10 PRK15387 E3 ubiquitin-protein 99.4 1.3E-12 2.9E-17 137.4 12.6 227 174-461 201-433 (788)
11 KOG0472 Leucine-rich repeat pr 99.4 2.8E-15 6.1E-20 140.0 -8.7 79 381-461 435-539 (565)
12 PRK15370 E3 ubiquitin-protein 99.3 1E-11 2.3E-16 131.4 11.7 217 174-438 199-426 (754)
13 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.4E-16 131.2 10.9 233 174-461 178-426 (754)
14 KOG0472 Leucine-rich repeat pr 99.2 7.3E-14 1.6E-18 130.7 -8.5 256 141-461 45-308 (565)
15 KOG0618 Serine/threonine phosp 99.2 1.4E-12 3E-17 134.1 -4.0 116 323-462 358-488 (1081)
16 KOG4658 Apoptotic ATPase [Sign 99.1 9.3E-11 2E-15 126.2 8.1 178 140-338 544-731 (889)
17 KOG0618 Serine/threonine phosp 99.1 1E-11 2.2E-16 127.8 0.2 46 419-466 422-467 (1081)
18 KOG0617 Ras suppressor protein 98.9 1.9E-10 4.1E-15 95.9 -1.1 146 171-356 30-183 (264)
19 KOG4658 Apoptotic ATPase [Sign 98.8 3.1E-09 6.8E-14 114.6 3.4 170 175-358 546-729 (889)
20 KOG4341 F-box protein containi 98.8 1.1E-10 2.4E-15 110.3 -6.7 288 174-487 138-457 (483)
21 KOG0617 Ras suppressor protein 98.7 3E-10 6.5E-15 94.7 -5.7 143 136-306 28-172 (264)
22 PRK15386 type III secretion pr 98.7 6.9E-08 1.5E-12 93.9 8.7 151 282-464 52-214 (426)
23 KOG4237 Extracellular matrix p 98.4 5.9E-08 1.3E-12 91.5 -0.2 69 174-244 67-137 (498)
24 cd00116 LRR_RI Leucine-rich re 98.4 1.2E-08 2.6E-13 99.4 -5.6 90 136-232 18-118 (319)
25 KOG4237 Extracellular matrix p 98.3 4.6E-08 9.9E-13 92.2 -2.3 76 379-461 272-357 (498)
26 cd00116 LRR_RI Leucine-rich re 98.3 3.3E-07 7.1E-12 89.3 3.6 39 397-437 250-288 (319)
27 PF14580 LRR_9: Leucine-rich r 98.3 4.4E-07 9.6E-12 78.8 2.7 110 172-295 17-126 (175)
28 KOG4341 F-box protein containi 98.3 1.3E-08 2.7E-13 96.6 -7.4 276 141-446 138-445 (483)
29 PRK15386 type III secretion pr 98.2 3.6E-06 7.7E-11 82.1 8.6 32 427-460 156-187 (426)
30 KOG3207 Beta-tubulin folding c 98.2 2.9E-07 6.2E-12 88.1 0.3 148 172-356 119-281 (505)
31 KOG3207 Beta-tubulin folding c 98.2 3.1E-07 6.6E-12 87.9 -0.3 100 250-356 144-256 (505)
32 KOG1259 Nischarin, modulator o 97.9 3.2E-06 6.9E-11 77.2 1.5 101 322-439 305-411 (490)
33 PF14580 LRR_9: Leucine-rich r 97.8 9.1E-06 2E-10 70.6 1.3 134 136-292 14-150 (175)
34 PF13855 LRR_8: Leucine rich r 97.7 4.1E-05 8.9E-10 54.2 3.7 40 200-241 2-43 (61)
35 PF13855 LRR_8: Leucine rich r 97.6 0.00011 2.3E-09 52.0 4.5 60 222-293 1-60 (61)
36 COG4886 Leucine-rich repeat (L 97.5 7E-05 1.5E-09 75.3 3.0 165 173-356 115-287 (394)
37 KOG2120 SCF ubiquitin ligase, 97.3 1.1E-05 2.5E-10 73.7 -4.1 181 141-337 185-376 (419)
38 KOG2120 SCF ubiquitin ligase, 97.3 7.2E-06 1.6E-10 74.9 -5.4 190 166-391 176-373 (419)
39 PLN03150 hypothetical protein; 97.3 0.00023 5E-09 75.5 4.2 109 175-296 419-529 (623)
40 COG4886 Leucine-rich repeat (L 97.3 0.00023 5E-09 71.5 4.0 124 281-444 162-294 (394)
41 KOG1909 Ran GTPase-activating 97.2 0.0001 2.2E-09 69.1 1.0 93 135-232 24-130 (382)
42 PLN03150 hypothetical protein; 97.2 0.00062 1.3E-08 72.3 6.3 93 200-305 419-512 (623)
43 KOG0532 Leucine-rich repeat (L 97.2 5.4E-05 1.2E-09 75.3 -1.7 162 174-356 75-244 (722)
44 KOG1259 Nischarin, modulator o 97.1 6.1E-05 1.3E-09 69.0 -1.4 55 174-231 284-338 (490)
45 KOG0532 Leucine-rich repeat (L 96.9 9.7E-05 2.1E-09 73.5 -2.2 147 166-334 113-270 (722)
46 PF12799 LRR_4: Leucine Rich r 96.9 0.00061 1.3E-08 44.3 2.0 32 200-232 2-34 (44)
47 KOG1859 Leucine-rich repeat pr 96.8 6.4E-05 1.4E-09 76.8 -5.1 55 399-462 234-291 (1096)
48 KOG3665 ZYG-1-like serine/thre 96.7 0.00083 1.8E-08 71.4 2.1 73 281-356 172-260 (699)
49 KOG0531 Protein phosphatase 1, 96.7 0.00057 1.2E-08 69.0 0.7 188 139-356 70-265 (414)
50 PF12799 LRR_4: Leucine Rich r 96.6 0.0013 2.8E-08 42.8 1.9 41 174-217 1-41 (44)
51 KOG3665 ZYG-1-like serine/thre 96.3 0.00084 1.8E-08 71.4 -0.4 81 252-354 122-203 (699)
52 KOG1947 Leucine rich repeat pr 96.0 0.00031 6.7E-09 72.5 -5.5 112 173-295 187-308 (482)
53 KOG2982 Uncharacterized conser 95.8 0.0031 6.7E-08 58.2 0.8 85 139-231 69-155 (418)
54 KOG2982 Uncharacterized conser 95.8 0.0029 6.2E-08 58.4 0.6 84 173-261 70-155 (418)
55 KOG1909 Ran GTPase-activating 95.8 0.0031 6.8E-08 59.4 0.5 257 162-461 18-309 (382)
56 KOG1644 U2-associated snRNP A' 95.5 0.025 5.4E-07 49.4 4.9 84 198-293 41-124 (233)
57 KOG2123 Uncharacterized conser 95.4 0.00062 1.3E-08 62.0 -5.1 60 198-263 40-99 (388)
58 KOG1947 Leucine rich repeat pr 95.2 0.00071 1.5E-08 69.8 -6.5 117 198-337 187-308 (482)
59 KOG0531 Protein phosphatase 1, 94.3 0.015 3.3E-07 58.7 0.9 189 137-355 91-286 (414)
60 KOG1644 U2-associated snRNP A' 94.2 0.063 1.4E-06 47.0 4.0 93 166-262 56-150 (233)
61 KOG2739 Leucine-rich acidic nu 93.2 0.025 5.5E-07 51.4 0.1 55 175-232 44-101 (260)
62 KOG2739 Leucine-rich acidic nu 93.1 0.058 1.2E-06 49.2 2.2 77 283-359 19-104 (260)
63 KOG1859 Leucine-rich repeat pr 93.1 0.006 1.3E-07 63.0 -4.5 139 80-232 124-264 (1096)
64 PF13504 LRR_7: Leucine rich r 92.7 0.074 1.6E-06 26.6 1.3 16 428-444 2-17 (17)
65 KOG2123 Uncharacterized conser 92.6 0.0069 1.5E-07 55.4 -4.4 108 135-258 13-123 (388)
66 KOG3864 Uncharacterized conser 92.3 0.018 4E-07 50.3 -2.0 66 393-463 121-189 (221)
67 KOG3864 Uncharacterized conser 91.7 0.063 1.4E-06 47.0 0.5 41 251-296 124-165 (221)
68 PF00560 LRR_1: Leucine Rich R 88.8 0.17 3.7E-06 27.2 0.5 21 283-305 1-21 (22)
69 KOG4579 Leucine-rich repeat (L 88.3 0.016 3.6E-07 47.3 -5.3 66 372-445 64-140 (177)
70 KOG4579 Leucine-rich repeat (L 87.2 0.056 1.2E-06 44.3 -2.9 64 167-232 46-110 (177)
71 COG5238 RNA1 Ran GTPase-activa 78.4 2.4 5.2E-05 39.3 3.5 63 282-358 185-254 (388)
72 smart00367 LRR_CC Leucine-rich 75.9 1.7 3.7E-05 24.3 1.2 15 427-441 2-16 (26)
73 PF13306 LRR_5: Leucine rich r 75.4 7.3 0.00016 31.6 5.5 13 218-230 77-89 (129)
74 PF13306 LRR_5: Leucine rich r 66.5 23 0.00049 28.6 6.6 76 174-260 12-89 (129)
75 smart00369 LRR_TYP Leucine-ric 56.4 7.5 0.00016 21.5 1.3 18 175-192 3-20 (26)
76 smart00370 LRR Leucine-rich re 56.4 7.5 0.00016 21.5 1.3 18 175-192 3-20 (26)
77 PF12061 DUF3542: Protein of u 52.4 11 0.00023 35.7 2.3 42 1-42 332-374 (402)
78 smart00364 LRR_BAC Leucine-ric 37.3 20 0.00044 20.2 1.0 16 175-190 3-18 (26)
79 PF13516 LRR_6: Leucine Rich r 35.4 24 0.00051 19.0 1.1 12 282-293 2-13 (24)
80 PRK10869 recombination and rep 32.9 1.5E+02 0.0031 31.4 7.4 69 5-102 249-317 (553)
81 COG4575 ElaB Uncharacterized c 28.6 1.6E+02 0.0034 23.1 4.9 29 15-43 6-34 (104)
82 PF02671 PAH: Paired amphipath 28.2 1E+02 0.0022 19.9 3.5 26 17-42 19-44 (47)
83 PF05725 FNIP: FNIP Repeat; I 27.8 1.1E+02 0.0023 19.5 3.5 30 324-353 12-41 (44)
84 PF00512 HisKA: His Kinase A ( 26.6 1.6E+02 0.0035 20.3 4.6 42 3-44 21-63 (68)
85 PF11328 DUF3130: Protein of u 26.2 67 0.0015 24.2 2.5 24 21-44 41-64 (90)
86 KOG3763 mRNA export factor TAP 20.3 27 0.00058 35.9 -0.7 12 221-232 243-254 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.4e-20 Score=207.94 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=146.3
Q ss_pred HHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCC-CCCCceEEEeecCCCCCCccccC----------------
Q 048322 133 REAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQP-HKCIKKVAIRNYGGARFPLWIGD---------------- 195 (498)
Q Consensus 133 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p~~~~~---------------- 195 (498)
....+.++.+|+.|.+..+.... .......+++++.. +.+|+.|.+.++....+|.++..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~---~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQ---KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccc---cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence 34457789999999886442100 00001112222222 24566666666666666655430
Q ss_pred ----CCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCcccccccc
Q 048322 196 ----PLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTD 271 (498)
Q Consensus 196 ----~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 271 (498)
..+++|+.|+|++|..++.+|.++.+++|+.|++.+|..+..+|..+. .+++|+.|++.+|..++.++..
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~------~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ------YLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh------ccCCCCEEeCCCCCCcCccCCc
Confidence 124445555554444444444444455555555555554444443322 2455555555555444444321
Q ss_pred ccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC---CccccEEEecCCCcceecC------
Q 048322 272 IKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS---YPRLCRLEVDECKELVCRT------ 341 (498)
Q Consensus 272 ~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~---l~~L~~L~l~~~~~~~~~~------ 341 (498)
. . +++|+.|++++|..+. .+|....+|+.| +.++. +. .+|. +++|++|.+.++....+..
T Consensus 701 i--~-----l~sL~~L~Lsgc~~L~-~~p~~~~nL~~L~L~~n~-i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 701 I--N-----LKSLYRLNLSGCSRLK-SFPDISTNISWLDLDETA-IE-EFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred C--C-----CCCCCEEeCCCCCCcc-ccccccCCcCeeecCCCc-cc-cccccccccccccccccccchhhccccccccc
Confidence 1 1 4455555555554443 444433444444 33322 11 1221 3334444333322111000
Q ss_pred ---CCCCCCccEEEEeccEe------eeecCCCCc----cCCCCCCcCCCC--CCCCCeEEecCC-CCCCC----CCccE
Q 048322 342 ---PIDSKLIKFMTISNSSL------DMIGCKGML----YDSQAGSSLPKP--MTTTNVLEFGKL-LEPGF----QILET 401 (498)
Q Consensus 342 ---~~~~~~L~~L~l~~~~l------~~~~~~~l~----~~~~~l~~lp~~--l~~L~~L~i~~~-~~~~l----p~L~~ 401 (498)
...+++|+.|++++|.. .+..++.|. .+|..+..+|.. +++|+.|++++| ....+ ++|+.
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCE
Confidence 00123455555544310 011111111 233334444332 234444444444 11111 12444
Q ss_pred EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCchhHh
Q 048322 402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPRLKK 465 (498)
Q Consensus 402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l~~ 465 (498)
|++++ +.+ ..+|.++..+++|+.|++.+|++++.+|.. ..+++|+.+++++|++|+.
T Consensus 851 L~Ls~-n~i------~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 851 LNLSR-TGI------EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred eECCC-CCC------ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 44433 122 234888888999999999999999998865 3457888899999988864
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.7e-19 Score=202.30 Aligned_cols=259 Identities=22% Similarity=0.335 Sum_probs=181.9
Q ss_pred HhhhcCCCCCCCceEEEeecC-CCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccc
Q 048322 165 HVLDILQPHKCIKKVAIRNYG-GARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEV 242 (498)
Q Consensus 165 ~~l~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~ 242 (498)
.++++++.+++|+.|+++++. ...+|. +. .+++|+.|+|++|..+..+|. ++++++|+.|++++|..++.+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 345667778999999999865 455665 44 589999999999999999997 9999999999999999999998643
Q ss_pred cCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCC--c-----------------
Q 048322 243 YGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPEL--L----------------- 303 (498)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~--l----------------- 303 (498)
.+++|+.|++++|..++.++.. ..+|+.|++.++. +. .+|.. +
T Consensus 702 -------~l~sL~~L~Lsgc~~L~~~p~~---------~~nL~~L~L~~n~-i~-~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 702 -------NLKSLYRLNLSGCSRLKSFPDI---------STNISWLDLDETA-IE-EFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred -------CCCCCCEEeCCCCCCccccccc---------cCCcCeeecCCCc-cc-cccccccccccccccccccchhhcc
Confidence 3889999999998766554310 3455666665542 32 44432 2
Q ss_pred --------------chHHHH-HHhccccc---ccCCCCccccEEEecCCCcce-ecCCCCCCCccEEEEeccEeeeecCC
Q 048322 304 --------------PSLEIL-VSKCEKLV---VSLSSYPRLCRLEVDECKELV-CRTPIDSKLIKFMTISNSSLDMIGCK 364 (498)
Q Consensus 304 --------------~~L~~L-i~~~~~l~---~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~ 364 (498)
++|+.| +.+|+.+. ..+..+++|+.|++++|..+. ++....+++|+.|+++
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls---------- 833 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS---------- 833 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC----------
Confidence 344445 44444322 122235666666666654433 3333345566666664
Q ss_pred CCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecC
Q 048322 365 GMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNC 437 (498)
Q Consensus 365 ~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c 437 (498)
+|..+..+|....+|+.|+++++ .+..+++|+.|++.+|++++.+ |..+..+++|+.|++++|
T Consensus 834 ----~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l------~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 834 ----GCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV------SLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ----CCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc------CcccccccCCCeeecCCC
Confidence 45677788877789999999998 3456778999999999999765 778889999999999999
Q ss_pred CCCCcCCCCCcc--------------ccccceeeccCchhH
Q 048322 438 PNLTLFPEVGLP--------------SSLLDLYVNNCPRLK 464 (498)
Q Consensus 438 ~~l~~lp~~~~~--------------~sL~~L~i~~c~~l~ 464 (498)
+++..++-...+ ++...+.+.+|.+|.
T Consensus 904 ~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 904 GALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 999876532222 222345677787664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=4.7e-18 Score=190.06 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=74.2
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCV 213 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~ 213 (498)
..+.++++|+.|+++++.- ...++..+..+++|++|+++++... .+|.++. .+++|++|++++|....
T Consensus 254 ~~l~~l~~L~~L~L~~n~l---------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKL---------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTG 322 (968)
T ss_pred hhHhCCCCCCEEECcCCee---------eccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCC
Confidence 4577888999999987642 1112334455678888888877643 5677766 57788888888776656
Q ss_pred CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322 214 SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL 262 (498)
Q Consensus 214 ~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 262 (498)
.+|. ++.+++|+.|++++|.-...+|..+. .+++|+.|+++++
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~Ls~n 366 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLG------KHNNLTVLDLSTN 366 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHh------CCCCCcEEECCCC
Confidence 6665 77788888888877654344554332 3667777777655
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=6.3e-18 Score=189.05 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccccc
Q 048322 381 TTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSS 451 (498)
Q Consensus 381 ~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~s 451 (498)
++|+.|++++| .++.+++|++|++++|.-... +|..+..+++|++|++++|.....+|.. ..+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ------IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc------CChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 56666666666 234456677777766442221 3777778888888888887766677764 34578
Q ss_pred ccceeeccCch
Q 048322 452 LLDLYVNNCPR 462 (498)
Q Consensus 452 L~~L~i~~c~~ 462 (498)
|+.|++++|+-
T Consensus 573 L~~l~ls~N~l 583 (968)
T PLN00113 573 LVQVNISHNHL 583 (968)
T ss_pred cCEEeccCCcc
Confidence 88888888763
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=2.8e-18 Score=167.83 Aligned_cols=259 Identities=22% Similarity=0.230 Sum_probs=121.7
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL 215 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l 215 (498)
++..++.|..|+|+.|. ..+++..|..-.++-+|+++++.+.++|..+.. .+..|-.|+|++ +.+..+
T Consensus 98 diF~l~dLt~lDLShNq----------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~-NrLe~L 165 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQ----------LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSN-NRLEML 165 (1255)
T ss_pred hhcccccceeeecchhh----------hhhcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhcccc-chhhhc
Confidence 34445555555554442 233444444445555566665555555555432 345555555555 345555
Q ss_pred CC-CCCccccceeecccccc----ceecCccccCCCCCCCCCCCceeeccCCCc-cccccccccCCccccCCCccceeee
Q 048322 216 PS-LGLLSSLKHLAVKGLKK----LKSIESEVYGEGFSMPFPSLKILRFENLPE-WWHWDTDIKGNVHVDIFPRLQELSV 289 (498)
Q Consensus 216 p~-i~~l~~L~~L~l~~~~~----l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~l 289 (498)
|+ +..|.+|+.|.+++++. +..+| .+++|+.|.+++... +..+++.. ..+.+|..+++
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP----------smtsL~vLhms~TqRTl~N~Ptsl------d~l~NL~dvDl 229 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLP----------SMTSLSVLHMSNTQRTLDNIPTSL------DDLHNLRDVDL 229 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCc----------cchhhhhhhcccccchhhcCCCch------hhhhhhhhccc
Confidence 55 55555566665555421 11122 233444444433211 11111111 11444444444
Q ss_pred ccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCC-CCCCccEEEEeccEeeeecCCCCcc
Q 048322 290 VKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPI-DSKLIKFMTISNSSLDMIGCKGMLY 368 (498)
Q Consensus 290 ~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~ 368 (498)
+.+ ++. .+|+++-+ +++|++|++++|....+.... ...+|++|+++.|
T Consensus 230 S~N-~Lp-~vPecly~-----------------l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN------------ 278 (1255)
T KOG0444|consen 230 SEN-NLP-IVPECLYK-----------------LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN------------ 278 (1255)
T ss_pred ccc-CCC-cchHHHhh-----------------hhhhheeccCcCceeeeeccHHHHhhhhhhccccc------------
Confidence 422 333 34433222 445555555555444332211 1344555555443
Q ss_pred CCCCCCcCCCCC---CCCCeEEecCC--CCCCCCC-------ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec
Q 048322 369 DSQAGSSLPKPM---TTTNVLEFGKL--LEPGFQI-------LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN 436 (498)
Q Consensus 369 ~~~~l~~lp~~l---~~L~~L~i~~~--~~~~lp~-------L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~ 436 (498)
.|+.+|..+ +.|+.|.+.+| .+.++|+ |+.+...+ ++|.-. |+++..+..|+.|.++
T Consensus 279 ---QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV------PEglcRC~kL~kL~L~- 347 (1255)
T KOG0444|consen 279 ---QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV------PEGLCRCVKLQKLKLD- 347 (1255)
T ss_pred ---hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC------chhhhhhHHHHHhccc-
Confidence 344444333 44555555554 2333332 44444443 333322 6666666677777664
Q ss_pred CCCCCcCCCC-CccccccceeeccCchhH
Q 048322 437 CPNLTLFPEV-GLPSSLLDLYVNNCPRLK 464 (498)
Q Consensus 437 c~~l~~lp~~-~~~~sL~~L~i~~c~~l~ 464 (498)
|+.+..+|+. .+++-|+.|++...|+|.
T Consensus 348 ~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 348 HNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccceeechhhhhhcCCcceeeccCCcCcc
Confidence 3566666665 555667777777766664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=4.7e-17 Score=159.38 Aligned_cols=281 Identities=17% Similarity=0.230 Sum_probs=192.0
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecC--CCCCCccccCCCCCCccEEeEeCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYG--GARFPLWIGDPLFSKIEFLELENCNNC 212 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~c~~~ 212 (498)
.++..+.+|+.|.+..|. ...+...|..++.|+.+.++.+. ...+|..+. .+..|..|+|+.+ .+
T Consensus 49 eEL~~lqkLEHLs~~HN~----------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~lDLShN-qL 115 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQ----------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTILDLSHN-QL 115 (1255)
T ss_pred HHHHHHhhhhhhhhhhhh----------hHhhhhhhccchhhHHHhhhccccccCCCCchhc--ccccceeeecchh-hh
Confidence 456666777777665543 34455566666778888777665 344677666 5788888888884 67
Q ss_pred CCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeecc
Q 048322 213 VSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK 291 (498)
Q Consensus 213 ~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (498)
+..|. +..-+++-.|++++ ++++.||...|- .++.|-.|+++++ .++..+|.+.. +.+|++|.+++
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfi-----nLtDLLfLDLS~N-rLe~LPPQ~RR------L~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSY-NNIETIPNSLFI-----NLTDLLFLDLSNN-RLEMLPPQIRR------LSMLQTLKLSN 182 (1255)
T ss_pred hhcchhhhhhcCcEEEEccc-CccccCCchHHH-----hhHhHhhhccccc-hhhhcCHHHHH------HhhhhhhhcCC
Confidence 78886 77788888888887 568888877664 4667777777765 55555544332 77889999998
Q ss_pred CCCcc---ccCCCCcchHHHH-HHhcccccccCC----CCccccEEEecCCCcceecC-CCCCCCccEEEEeccEeeeec
Q 048322 292 CPKLS---GKLPELLPSLEIL-VSKCEKLVVSLS----SYPRLCRLEVDECKELVCRT-PIDSKLIKFMTISNSSLDMIG 362 (498)
Q Consensus 292 c~~l~---~~lp~~l~~L~~L-i~~~~~l~~~~~----~l~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~ 362 (498)
+|-.. .++|. +.+|+.| +++......-+| .+.+|..++++.|....+|. ...+++|+.|++++|.+.-.+
T Consensus 183 NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN 261 (1255)
T ss_pred ChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee
Confidence 86432 24553 5666666 666654333344 48899999999887766654 345899999999988443321
Q ss_pred CCCCccCCCCCCcCCCCCCCCCeEEecCCC-------CCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeee
Q 048322 363 CKGMLYDSQAGSSLPKPMTTTNVLEFGKLL-------EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIW 435 (498)
Q Consensus 363 ~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~-------~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~ 435 (498)
.. -....+|++|+++.|. +..++.|+.|.+.+ ++|+ ++++|.+++.|.+|+.+...
T Consensus 262 ~~------------~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~-NkL~----FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 262 MT------------EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN-NKLT----FEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred cc------------HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc-Cccc----ccCCccchhhhhhhHHHHhh
Confidence 10 0122789999999983 44566688888866 4453 23459999999999999998
Q ss_pred cCCCCCcCCCC-CccccccceeeccC
Q 048322 436 NCPNLTLFPEV-GLPSSLLDLYVNNC 460 (498)
Q Consensus 436 ~c~~l~~lp~~-~~~~sL~~L~i~~c 460 (498)
+ +++.-+|++ .....|+.|.++..
T Consensus 325 n-N~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 325 N-NKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred c-cccccCchhhhhhHHHHHhccccc
Confidence 7 688888874 23356666666543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=3.2e-15 Score=145.65 Aligned_cols=145 Identities=15% Similarity=0.240 Sum_probs=62.8
Q ss_pred CCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC
Q 048322 198 FSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN 275 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 275 (498)
++-|++|+|+.+ .+..+|. +..=.++++|++.+ +.++.+....|. .+.+|-.|.++++ .++.++...
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~-----~lnsL~tlkLsrN-rittLp~r~--- 216 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFD-----SLNSLLTLKLSRN-RITTLPQRS--- 216 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecc-cccccccccccc-----ccchheeeecccC-cccccCHHH---
Confidence 344444444442 3333332 33334455555554 234444443332 2444555555433 222222111
Q ss_pred ccccCCCccceeeeccCCCcc---ccCCCCcchHHHH-HHhcc--cccc-cCCCCccccEEEecCCCccee--cCCCCCC
Q 048322 276 VHVDIFPRLQELSVVKCPKLS---GKLPELLPSLEIL-VSKCE--KLVV-SLSSYPRLCRLEVDECKELVC--RTPIDSK 346 (498)
Q Consensus 276 ~~~~~l~~L~~L~l~~c~~l~---~~lp~~l~~L~~L-i~~~~--~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~ 346 (498)
+..+|+|+.|++..+. ++ +.--.++++|+.| +.... .+.+ .|-.+.++++|++..|....+ .+.++++
T Consensus 217 --Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 217 --FKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred --hhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 1225666666665441 11 0001234555555 33321 1221 122255666666665554432 2344566
Q ss_pred CccEEEEecc
Q 048322 347 LIKFMTISNS 356 (498)
Q Consensus 347 ~L~~L~l~~~ 356 (498)
+|+.|++++|
T Consensus 294 ~L~~L~lS~N 303 (873)
T KOG4194|consen 294 SLEQLDLSYN 303 (873)
T ss_pred hhhhhccchh
Confidence 6666666666
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.5e-13 Score=144.44 Aligned_cols=249 Identities=23% Similarity=0.188 Sum_probs=163.9
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL 220 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~ 220 (498)
..-..|+++.+.- ..++..+ +.+|+.|.+.+|....+|. .+++|++|++++| .++.+|..
T Consensus 201 ~~~~~LdLs~~~L----------tsLP~~l--~~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l-- 260 (788)
T PRK15387 201 NGNAVLNVGESGL----------TTLPDCL--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN-QLTSLPVL-- 260 (788)
T ss_pred CCCcEEEcCCCCC----------CcCCcch--hcCCCEEEccCCcCCCCCC-----CCCCCcEEEecCC-ccCcccCc--
Confidence 4456677766541 1133333 2478899999888888875 2578999999885 67778753
Q ss_pred ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322 221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP 300 (498)
Q Consensus 221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp 300 (498)
.++|+.|++.++ .+..+|. .+.+|+.|++.++ .++.++. . +++|+.|++++| .++ .+|
T Consensus 261 p~sL~~L~Ls~N-~L~~Lp~---------lp~~L~~L~Ls~N-~Lt~LP~----~-----p~~L~~LdLS~N-~L~-~Lp 318 (788)
T PRK15387 261 PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGN-QLTSLPV----L-----PPGLQELSVSDN-QLA-SLP 318 (788)
T ss_pred ccccceeeccCC-chhhhhh---------chhhcCEEECcCC-ccccccc----c-----ccccceeECCCC-ccc-cCC
Confidence 468888888875 4666664 2457888888776 4444331 1 578999999987 665 677
Q ss_pred CCcchHHHH-HHhcccccccCCCC-ccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC
Q 048322 301 ELLPSLEIL-VSKCEKLVVSLSSY-PRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK 378 (498)
Q Consensus 301 ~~l~~L~~L-i~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~ 378 (498)
..+.+|+.| +.+|. +. .+|.+ .+|+.|++++|....++.. +++|+.|++++| .+..+|.
T Consensus 319 ~lp~~L~~L~Ls~N~-L~-~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N---------------~L~~LP~ 379 (788)
T PRK15387 319 ALPSELCKLWAYNNQ-LT-SLPTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN---------------RLTSLPA 379 (788)
T ss_pred CCcccccccccccCc-cc-cccccccccceEecCCCccCCCCCC--Ccccceehhhcc---------------ccccCcc
Confidence 766678888 66543 33 45653 4799999998876665542 567888888765 3445555
Q ss_pred CCCCCCeEEecCCCCCCCC----CccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccccccc
Q 048322 379 PMTTTNVLEFGKLLEPGFQ----ILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLL 453 (498)
Q Consensus 379 ~l~~L~~L~i~~~~~~~lp----~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~ 453 (498)
...+|+.|++++|.+..+| .|+.|+++++ .++.+ |.. ..+|+.|++++ ++++.+|.. ..+++|+
T Consensus 380 l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N-~LssI------P~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 380 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSL------PML---PSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred cccccceEEecCCcccCCCCcccCCCEEEccCC-cCCCC------Ccc---hhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 5567888888887443333 3778888774 34433 432 23566777776 466777754 3346777
Q ss_pred ceeeccCc
Q 048322 454 DLYVNNCP 461 (498)
Q Consensus 454 ~L~i~~c~ 461 (498)
.|++++++
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 77777765
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.48 E-value=2.2e-14 Score=139.95 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=162.5
Q ss_pred cccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCC
Q 048322 143 LHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGL 220 (498)
Q Consensus 143 L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~ 220 (498)
-+.|+++.|.- .... ++.+.++++|+.+.+..|....+|.... ...+|+.|+|.++ .+..+.+ +..
T Consensus 80 t~~LdlsnNkl------~~id---~~~f~nl~nLq~v~l~~N~Lt~IP~f~~--~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 80 TQTLDLSNNKL------SHID---FEFFYNLPNLQEVNLNKNELTRIPRFGH--ESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred eeeeecccccc------ccCc---HHHHhcCCcceeeeeccchhhhcccccc--cccceeEEeeecc-ccccccHHHHHh
Confidence 34588877641 1112 3344556999999999999999999776 4678999999985 5555554 778
Q ss_pred ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322 221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP 300 (498)
Q Consensus 221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp 300 (498)
++.|+.|+++. +.+.+++..-|. .-.++++|++.++ .++.+..+. +..+.+|-+|.++.+ .++ .+|
T Consensus 148 l~alrslDLSr-N~is~i~~~sfp-----~~~ni~~L~La~N-~It~l~~~~-----F~~lnsL~tlkLsrN-rit-tLp 213 (873)
T KOG4194|consen 148 LPALRSLDLSR-NLISEIPKPSFP-----AKVNIKKLNLASN-RITTLETGH-----FDSLNSLLTLKLSRN-RIT-TLP 213 (873)
T ss_pred Hhhhhhhhhhh-chhhcccCCCCC-----CCCCceEEeeccc-ccccccccc-----ccccchheeeecccC-ccc-ccC
Confidence 89999999998 468888865443 3467999999876 444443222 233789999999987 454 777
Q ss_pred C----CcchHHHH-HHhcc-cccc--cCCCCccccEEEecCCCcceecCCC--CCCCccEEEEeccEeeeecCCCCccCC
Q 048322 301 E----LLPSLEIL-VSKCE-KLVV--SLSSYPRLCRLEVDECKELVCRTPI--DSKLIKFMTISNSSLDMIGCKGMLYDS 370 (498)
Q Consensus 301 ~----~l~~L~~L-i~~~~-~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~ 370 (498)
. .++.|++| +.... .+.. .|..+++|+.|.+..|+...+..+. .+.++++|++..|.+.-.+-..
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~----- 288 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW----- 288 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc-----
Confidence 4 34566666 33221 1111 3455899999999988877655443 3889999999887332211100
Q ss_pred CCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCc
Q 048322 371 QAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTL 442 (498)
Q Consensus 371 ~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~ 442 (498)
--++..|+.|++++| .....++|+.|++++ +.++.+. ++.+..|++|++|.+++ +.+.+
T Consensus 289 ------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~-----~~sf~~L~~Le~LnLs~-Nsi~~ 355 (873)
T KOG4194|consen 289 ------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLD-----EGSFRVLSQLEELNLSH-NSIDH 355 (873)
T ss_pred ------ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCC-----hhHHHHHHHhhhhcccc-cchHH
Confidence 012366777777777 122345677777766 4444331 23344445555555544 24444
Q ss_pred C
Q 048322 443 F 443 (498)
Q Consensus 443 l 443 (498)
+
T Consensus 356 l 356 (873)
T KOG4194|consen 356 L 356 (873)
T ss_pred H
Confidence 3
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.3e-12 Score=137.42 Aligned_cols=227 Identities=25% Similarity=0.253 Sum_probs=169.1
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
.+-..|++++++...+|..+. ++|+.|++.+| .++.+|.. +++|++|+++++ .++.+|. .+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~---------lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV---------LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCC-ccCcccC---------cccc
Confidence 456789999999999998764 47999999984 78888863 589999999985 6888874 2578
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC-CccccEEEe
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS-YPRLCRLEV 331 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~-l~~L~~L~l 331 (498)
|+.|++.++ .+..+.. . +.+|+.|++++| .++ .+|..+++|+.| ++++ .+. .+|. ..+|+.|.+
T Consensus 264 L~~L~Ls~N-~L~~Lp~----l-----p~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N-~L~-~Lp~lp~~L~~L~L 329 (788)
T PRK15387 264 LLELSIFSN-PLTHLPA----L-----PSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDN-QLA-SLPALPSELCKLWA 329 (788)
T ss_pred cceeeccCC-chhhhhh----c-----hhhcCEEECcCC-ccc-cccccccccceeECCCC-ccc-cCCCCccccccccc
Confidence 999999876 3444331 1 568999999998 666 788877889988 7765 444 4454 457888999
Q ss_pred cCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCC----CccEEEEcCC
Q 048322 332 DECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQ----ILETLVIGNS 407 (498)
Q Consensus 332 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp----~L~~L~l~~c 407 (498)
.+|....++. .+.+|+.|++++| +++.+|...++|+.|++++|.+..+| +|+.|+++++
T Consensus 330 s~N~L~~LP~--lp~~Lq~LdLS~N---------------~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N 392 (788)
T PRK15387 330 YNNQLTSLPT--LPSGLQELSVSDN---------------QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN 392 (788)
T ss_pred ccCccccccc--cccccceEecCCC---------------ccCCCCCCCcccceehhhccccccCcccccccceEEecCC
Confidence 8887665553 2468999999876 55666665578999999988444444 4999999884
Q ss_pred CCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCc
Q 048322 408 EQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 408 ~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 461 (498)
.++.+ |.. .++|+.|+++++ .+.++|. .+.+|+.|+++++.
T Consensus 393 -~Lt~L------P~l---~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~Nq 433 (788)
T PRK15387 393 -RLTSL------PVL---PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ 433 (788)
T ss_pred -cccCC------CCc---ccCCCEEEccCC-cCCCCCc--chhhhhhhhhccCc
Confidence 45543 543 357999999995 6888886 46788888888763
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=2.8e-15 Score=139.96 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=58.6
Q ss_pred CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCc-----------------cccCCC-CccCCCCCCcCeEeee
Q 048322 381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPW-----------------RQGRGL-SMGFQRLTSLQSLKIW 435 (498)
Q Consensus 381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l-----------------~~l~~l-~~~l~~l~~L~~L~l~ 435 (498)
++|..|++++| ..+++-.||.|+|+.. ....+ .++..+ |+++.++.+|..|++.
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred hcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 77888888888 3445556999998874 23211 122233 4468899999999998
Q ss_pred cCCCCCcCCCC-CccccccceeeccCc
Q 048322 436 NCPNLTLFPEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 436 ~c~~l~~lp~~-~~~~sL~~L~i~~c~ 461 (498)
+ +.+..+|.. |..++|++|++++.|
T Consensus 514 n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 514 N-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred C-CchhhCChhhccccceeEEEecCCc
Confidence 7 688899876 788999999999987
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=1e-11 Score=131.42 Aligned_cols=217 Identities=16% Similarity=0.186 Sum_probs=119.5
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
++|+.|++++|....+|..+. ++|+.|++++| .++.+|. + .++|+.|++++| .+..+|..+ ..
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N-~L~~LP~~l--------~s 262 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ----GNIKTLYANSN-QLTSIPATL--PDTIQEMELSIN-RITELPERL--------PS 262 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc----cCCCEEECCCC-ccccCChhh--hccccEEECcCC-ccCcCChhH--------hC
Confidence 467777777777777776543 46777777765 4566664 2 236777777775 355666432 23
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCc-chHHHH-HHhcccccccCCC--CccccE
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL-PSLEIL-VSKCEKLVVSLSS--YPRLCR 328 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l-~~L~~L-i~~~~~l~~~~~~--l~~L~~ 328 (498)
+|+.|+++++ .+..++... .++|+.|++++| +++ .+|..+ ++|+.| +.++. +. .+|. .++|+.
T Consensus 263 ~L~~L~Ls~N-~L~~LP~~l--------~~sL~~L~Ls~N-~Lt-~LP~~lp~sL~~L~Ls~N~-Lt-~LP~~l~~sL~~ 329 (754)
T PRK15370 263 ALQSLDLFHN-KISCLPENL--------PEELRYLSVYDN-SIR-TLPAHLPSGITHLNVQSNS-LT-ALPETLPPGLKT 329 (754)
T ss_pred CCCEEECcCC-ccCcccccc--------CCCCcEEECCCC-ccc-cCcccchhhHHHHHhcCCc-cc-cCCcccccccee
Confidence 6777777644 444432111 347788888777 565 566544 356666 55542 22 2332 456777
Q ss_pred EEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCCCCCCCCC-----ccEE
Q 048322 329 LEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKLLEPGFQI-----LETL 402 (498)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~~~~~lp~-----L~~L 402 (498)
|++++|....++... +++|+.|++++| .+..+|..+ ++|+.|++++|.+..+|. |+.|
T Consensus 330 L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N---------------~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~L 393 (754)
T PRK15370 330 LEAGENALTSLPASL-PPELQVLDVSKN---------------QITVLPETLPPTITTLDVSRNALTNLPENLPAALQIM 393 (754)
T ss_pred ccccCCccccCChhh-cCcccEEECCCC---------------CCCcCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHH
Confidence 777777655444322 356777777665 333344333 456666666664434432 5666
Q ss_pred EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
+++++ +++.++. .+|.....++++..|.+.+++
T Consensus 394 dLs~N-~L~~LP~--sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 394 QASRN-NLVRLPE--SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hhccC-CcccCch--hHHHHhhcCCCccEEEeeCCC
Confidence 66553 3332200 012222234555666665543
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.1e-11 Score=131.17 Aligned_cols=233 Identities=22% Similarity=0.244 Sum_probs=164.7
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
.+...|++++++...+|..+. ++|+.|++++| .++.+|. +. ++|+.|++++| .++.+|..+ .+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l--------~~ 241 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP----EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATL--------PD 241 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc----cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhh--------hc
Confidence 567899999999999998664 57999999986 7888886 43 58999999985 588887532 45
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCc-chHHHH-HHhcccccccCCC--CccccE
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL-PSLEIL-VSKCEKLVVSLSS--YPRLCR 328 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l-~~L~~L-i~~~~~l~~~~~~--l~~L~~ 328 (498)
+|+.|+++++ .+..++... ..+|+.|++++| +++ .+|..+ ++|+.| +++| .+. .+|. .++|+.
T Consensus 242 ~L~~L~Ls~N-~L~~LP~~l--------~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N-~Lt-~LP~~lp~sL~~ 308 (754)
T PRK15370 242 TIQEMELSIN-RITELPERL--------PSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDN-SIR-TLPAHLPSGITH 308 (754)
T ss_pred cccEEECcCC-ccCcCChhH--------hCCCCEEECcCC-ccC-ccccccCCCCcEEECCCC-ccc-cCcccchhhHHH
Confidence 7999999887 444443211 357999999866 776 778654 467777 7665 343 3443 346888
Q ss_pred EEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCCCCCCC-----CCccEE
Q 048322 329 LEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKLLEPGF-----QILETL 402 (498)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~~~~~l-----p~L~~L 402 (498)
|++++|....++.. .+++|+.|++++| .+..+|..+ ++|+.|++++|.+..+ ++|+.|
T Consensus 309 L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N---------------~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~L 372 (754)
T PRK15370 309 LNVQSNSLTALPET-LPPGLKTLEAGEN---------------ALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTL 372 (754)
T ss_pred HHhcCCccccCCcc-ccccceeccccCC---------------ccccCChhhcCcccEEECCCCCCCcCChhhcCCcCEE
Confidence 88888776554432 2468888888776 444566555 6899999999833322 359999
Q ss_pred EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-----CccccccceeeccCc
Q 048322 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-----GLPSSLLDLYVNNCP 461 (498)
Q Consensus 403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~~sL~~L~i~~c~ 461 (498)
+|++| .++.+ |..+. .+|+.|++++| ++..+|.. ...+++..|++.+.|
T Consensus 373 dLs~N-~Lt~L------P~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 373 DVSRN-ALTNL------PENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCCC-cCCCC------CHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 99886 45443 66554 47899999885 77788763 122567889998887
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.23 E-value=7.3e-14 Score=130.66 Aligned_cols=256 Identities=21% Similarity=0.238 Sum_probs=148.3
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LG 219 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~ 219 (498)
..++.|.++.+. .+.+.+.+.++..+.+|.+..+....+|..++ .+..++.|+.+.+ ++..+|. ++
T Consensus 45 v~l~~lils~N~----------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n-~ls~lp~~i~ 111 (565)
T KOG0472|consen 45 VDLQKLILSHND----------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHN-KLSELPEQIG 111 (565)
T ss_pred cchhhhhhccCc----------hhhccHhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccc-hHhhccHHHh
Confidence 445555555443 23344455556777778888777777777777 4677777777773 5666776 77
Q ss_pred CccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccC
Q 048322 220 LLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKL 299 (498)
Q Consensus 220 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l 299 (498)
.+++|++|+++. +.+.+++.+++. +..|+.++..+. ++...+.+ ...+.+|..+.+.++ +++ .+
T Consensus 112 s~~~l~~l~~s~-n~~~el~~~i~~------~~~l~dl~~~~N-~i~slp~~------~~~~~~l~~l~~~~n-~l~-~l 175 (565)
T KOG0472|consen 112 SLISLVKLDCSS-NELKELPDSIGR------LLDLEDLDATNN-QISSLPED------MVNLSKLSKLDLEGN-KLK-AL 175 (565)
T ss_pred hhhhhhhhhccc-cceeecCchHHH------Hhhhhhhhcccc-ccccCchH------HHHHHHHHHhhcccc-chh-hC
Confidence 788888887777 346666665544 555555554433 22222111 112556666666665 444 55
Q ss_pred CCCcchHHHH--HHhcccccccCCC----CccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322 300 PELLPSLEIL--VSKCEKLVVSLSS----YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG 373 (498)
Q Consensus 300 p~~l~~L~~L--i~~~~~l~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l 373 (498)
|...-+.+.| +..|.++...+|. +.+|+.|++..++...+|.....+.|+.|++..|. +
T Consensus 176 ~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~---------------i 240 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ---------------I 240 (565)
T ss_pred CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH---------------H
Confidence 6555556667 5556665555554 66667777777777666666666667766666542 2
Q ss_pred CcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Cccccc
Q 048322 374 SSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSL 452 (498)
Q Consensus 374 ~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL 452 (498)
+.+|..+ ...+++|..|+++. +++++. |+++.-+.+|++|++++ +.+.++|.. |.. .|
T Consensus 241 ~~lpae~------------~~~L~~l~vLDLRd-Nklke~------Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 241 EMLPAEH------------LKHLNSLLVLDLRD-NKLKEV------PDEICLLRSLERLDLSN-NDISSLPYSLGNL-HL 299 (565)
T ss_pred HhhHHHH------------hcccccceeeeccc-cccccC------chHHHHhhhhhhhcccC-CccccCCcccccc-ee
Confidence 2232211 11234455555555 344433 66666666666666665 455666543 333 45
Q ss_pred cceeeccCc
Q 048322 453 LDLYVNNCP 461 (498)
Q Consensus 453 ~~L~i~~c~ 461 (498)
+.|.+.|.|
T Consensus 300 ~~L~leGNP 308 (565)
T KOG0472|consen 300 KFLALEGNP 308 (565)
T ss_pred eehhhcCCc
Confidence 555555555
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-12 Score=134.08 Aligned_cols=116 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred CccccEEEecCCCcce--ecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC----CCCCCCeEEecCC-----
Q 048322 323 YPRLCRLEVDECKELV--CRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK----PMTTTNVLEFGKL----- 391 (498)
Q Consensus 323 l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~----~l~~L~~L~i~~~----- 391 (498)
++.|+.|.+.+|.... ++-+..+..|+.|++++| .|.++|. .+..|+.|++++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN---------------rL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN---------------RLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccc---------------ccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 4455555555554332 333444566666666654 3333332 2245566666666
Q ss_pred --CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccc-ccccceeeccCch
Q 048322 392 --LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLP-SSLLDLYVNNCPR 462 (498)
Q Consensus 392 --~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~-~sL~~L~i~~c~~ 462 (498)
.+..++.|++|...+ +.|. .+| .+..+++|+.++++ |+.|..+-.. ..| ++|++|++++.+.
T Consensus 423 p~tva~~~~L~tL~ahs-N~l~------~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHS-NQLL------SFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHHhhhhhHHHhhcC-Ccee------ech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 223445566666655 2332 247 66778888888886 4566544221 345 7888888888764
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=9.3e-11 Score=126.23 Aligned_cols=178 Identities=22% Similarity=0.290 Sum_probs=112.4
Q ss_pred cCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecC-CCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYG-GARFPLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
..+|++|.+.++.. ...... .+.+...+.|++|++++|. +.++|+.++ .|-+|++|++++ ..+..+|.
T Consensus 544 ~~~L~tLll~~n~~----~l~~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~L~~-t~I~~LP~~ 613 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD----WLLEIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLDLSD-TGISHLPSG 613 (889)
T ss_pred CCccceEEEeecch----hhhhcC---HHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhcccccC-CCccccchH
Confidence 34689998887741 001111 1223445999999999654 788999998 699999999998 47889998
Q ss_pred CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCC-ccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLP-EWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
+++|+.|.+|++..+..+..++.-. ..+++|++|.+..-. ..... ....+..+.+|+.+.+..+....
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~------~~L~~Lr~L~l~~s~~~~~~~-----~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGIL------LELQSLRVLRLPRSALSNDKL-----LLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred HHHHHhhheeccccccccccccchh------hhcccccEEEeeccccccchh-----hHHhhhcccchhhheeecchhHh
Confidence 9999999999999877666663322 248999999885432 11111 11122336666666665543310
Q ss_pred ccCCCCcchHHHH---HH--hccc--ccccCCCCccccEEEecCCCcce
Q 048322 297 GKLPELLPSLEIL---VS--KCEK--LVVSLSSYPRLCRLEVDECKELV 338 (498)
Q Consensus 297 ~~lp~~l~~L~~L---i~--~~~~--l~~~~~~l~~L~~L~l~~~~~~~ 338 (498)
..-...+..|.++ +. .|.. ....++.+.+|+.|.|.+|....
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 0111234555555 22 2222 22245558999999999988754
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=1e-11 Score=127.76 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchhHhh
Q 048322 419 LSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKV 466 (498)
Q Consensus 419 l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~ 466 (498)
+|+.+..+..|++|...+ +.+.++|+...++.|+.++++ |..|.+.
T Consensus 422 Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred hhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhh
Confidence 377777777888887766 577788866667899999997 5555543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-10 Score=95.86 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322 171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
...+++..|.++.+....+|..+. .+.+|+.|++.+ +.++.+|. +..++.|+.|.++ ++.+..+|..|..
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs----- 100 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGS----- 100 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHH--Hhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCccccCC-----
Confidence 334556666666666666665555 366666666665 35666665 6666666666664 3444444443322
Q ss_pred CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH----HHhccc--ccccCCCC
Q 048322 250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL----VSKCEK--LVVSLSSY 323 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L----i~~~~~--l~~~~~~l 323 (498)
||-|+.|++..+.--...+|..|..++.| +.+... +...+..+
T Consensus 101 -------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l 149 (264)
T KOG0617|consen 101 -------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL 149 (264)
T ss_pred -------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence 55555555554422223577777666666 222211 22233348
Q ss_pred ccccEEEecCCCcceecC-CCCCCCccEEEEecc
Q 048322 324 PRLCRLEVDECKELVCRT-PIDSKLIKFMTISNS 356 (498)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~ 356 (498)
++|+.|.+.+++.+.++. ...+..|+.|+|.+|
T Consensus 150 t~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 150 TNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 888888888888777653 334777777777776
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=3.1e-09 Score=114.61 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=100.0
Q ss_pred CCceEEEeecC--CCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 175 CIKKVAIRNYG--GARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 175 ~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
+|+.|-+.++. ....+..+.. .++.|+.|+|++|.....+|. |+.|-+||+|++++ ..+..+|..+.. +
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~-~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~------L 617 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFR-SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN------L 617 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHh-hCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH------H
Confidence 45555555543 2233332121 589999999999999999998 99999999999988 468888876544 8
Q ss_pred CCCceeeccCCCccccccccccCCccccCCCccceeeeccCC-CccccCCC---CcchHHHH-HHhccc-ccccCCCCcc
Q 048322 252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP-KLSGKLPE---LLPSLEIL-VSKCEK-LVVSLSSYPR 325 (498)
Q Consensus 252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~lp~---~l~~L~~L-i~~~~~-l~~~~~~l~~ 325 (498)
.+|.+|++.....+... +++... +++|++|.+..-. ......-. .+.+|+.+ +..+.. +...+-.++.
T Consensus 618 k~L~~Lnl~~~~~l~~~-~~i~~~-----L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~ 691 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI-PGILLE-----LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTR 691 (889)
T ss_pred Hhhheeccccccccccc-cchhhh-----cccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHH
Confidence 88888988876555444 333333 8899999986542 11111111 23334433 222211 0011111233
Q ss_pred cc----EEEecCCCcce-ecCCCCCCCccEEEEeccEe
Q 048322 326 LC----RLEVDECKELV-CRTPIDSKLIKFMTISNSSL 358 (498)
Q Consensus 326 L~----~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l 358 (498)
|. .+.+.+|.... ......+.+|+.|.|.+|..
T Consensus 692 L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred HHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 32 33333333332 33445588999999988843
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.78 E-value=1.1e-10 Score=110.34 Aligned_cols=288 Identities=18% Similarity=0.201 Sum_probs=166.9
Q ss_pred CCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCC--CC-CCccccceeeccccccceecCccccCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLP--SL-GLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp--~i-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
.-|+.|+++|+.....-+. .....++|+++|.+.+|..++.-- ++ ..+++|++|.+..|.+++...-.... .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----E 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----H
Confidence 4588888888875544221 112257888888888887665322 22 35778888888888776654332111 2
Q ss_pred CCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCccc----cCCCCcchHHHH-HHhcccccccC---
Q 048322 250 PFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLSG----KLPELLPSLEIL-VSKCEKLVVSL--- 320 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~----~lp~~l~~L~~L-i~~~~~l~~~~--- 320 (498)
.+++|++|++++|+.+.+-. .... .....++.+...+|..+.. .+....+-+-++ +..|..+++.-
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~-----rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQ-----RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHh-----ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 48888888888887765521 0000 0144566776777754420 001112223334 45565554311
Q ss_pred -C-CCccccEEEecCCCcceec----CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC---
Q 048322 321 -S-SYPRLCRLEVDECKELVCR----TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--- 391 (498)
Q Consensus 321 -~-~l~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--- 391 (498)
. ....|+.|..++|....-. -....++|+.|.+..|..... ..++.+..+-+.|+.+++.+|
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---------~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---------RGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---------hhhhhhhcCChhhhhhccccccee
Confidence 1 1566777777777664411 122357788877766521000 011222233367888888877
Q ss_pred -------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCch
Q 048322 392 -------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCPR 462 (498)
Q Consensus 392 -------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~ 462 (498)
...++|.|+.|.+++|..++.- .+..+...-..+..|..+.+.+||.+..---. ...++|+.+++.+|..
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhh-hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 2346788999999999887632 11122334456678999999999987653222 2236899999999977
Q ss_pred hHh-hhccCCCCCCCCcCCCCeEEEC
Q 048322 463 LKK-VCKRDQGKEWPKIAHIPWVVID 487 (498)
Q Consensus 463 l~~-~~~~~~~~~~~~i~hi~~~~~~ 487 (498)
..+ ..+.. ..|.|.+.+.
T Consensus 439 vtk~~i~~~-------~~~lp~i~v~ 457 (483)
T KOG4341|consen 439 VTKEAISRF-------ATHLPNIKVH 457 (483)
T ss_pred hhhhhhHHH-------HhhCccceeh
Confidence 643 22211 3467776664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.70 E-value=3e-10 Score=94.68 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=105.6
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL 215 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l 215 (498)
.+.++.+++.|.|+.+. ...++..+..+.+|++|.++++...++|..++ ++++|+.|+++- +.+..+
T Consensus 28 gLf~~s~ITrLtLSHNK----------l~~vppnia~l~nlevln~~nnqie~lp~~is--sl~klr~lnvgm-nrl~~l 94 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK----------LTVVPPNIAELKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGM-NRLNIL 94 (264)
T ss_pred cccchhhhhhhhcccCc----------eeecCCcHHHhhhhhhhhcccchhhhcChhhh--hchhhhheecch-hhhhcC
Confidence 35567788888887764 22244555566899999999999999999988 799999999986 467788
Q ss_pred CC-CCCccccceeeccccc-cceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322 216 PS-LGLLSSLKHLAVKGLK-KLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 216 p~-i~~l~~L~~L~l~~~~-~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
|. +|.+|.|+.|+++.++ +-..+|..||. ++.|+.|.+++. .++-++++ .+ .+.+|+.|.+.++.
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~------m~tlralyl~dn-dfe~lp~d-vg-----~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFY------MTTLRALYLGDN-DFEILPPD-VG-----KLTNLQILSLRDND 161 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhH------HHHHHHHHhcCC-CcccCChh-hh-----hhcceeEEeeccCc
Confidence 87 9999999999998753 23457888776 788888888775 33444332 22 38899999999884
Q ss_pred CccccCCCCcchH
Q 048322 294 KLSGKLPELLPSL 306 (498)
Q Consensus 294 ~l~~~lp~~l~~L 306 (498)
-+ .+|..+..|
T Consensus 162 ll--~lpkeig~l 172 (264)
T KOG0617|consen 162 LL--SLPKEIGDL 172 (264)
T ss_pred hh--hCcHHHHHH
Confidence 43 677644333
No 22
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=6.9e-08 Score=93.87 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=80.4
Q ss_pred CccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC--CccccEEEecCCCcceecCCCCCCCccEEEEeccEe
Q 048322 282 PRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS--YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSL 358 (498)
Q Consensus 282 ~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l 358 (498)
.+++.|++++| .++ .+|...++|+.| +.+|..+. .+|. .++|++|.+.+|..+. ..+++|+.|++.+
T Consensus 52 ~~l~~L~Is~c-~L~-sLP~LP~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~Cs~L~----sLP~sLe~L~L~~--- 121 (426)
T PRK15386 52 RASGRLYIKDC-DIE-SLPVLPNELTEITIENCNNLT-TLPGSIPEGLEKLTVCHCPEIS----GLPESVRSLEIKG--- 121 (426)
T ss_pred cCCCEEEeCCC-CCc-ccCCCCCCCcEEEccCCCCcc-cCCchhhhhhhheEccCccccc----ccccccceEEeCC---
Confidence 44444444444 333 444333334444 44444443 2332 2456666666664332 1245666666643
Q ss_pred eeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------C-CCCCCC-ccEEEEcCCCCCCCccccCCCCccCCCCCCcC
Q 048322 359 DMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------L-EPGFQI-LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQ 430 (498)
Q Consensus 359 ~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------~-~~~lp~-L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~ 430 (498)
..|..+..+|. +|+.|.+.++ . ...+|. |+.|.+.+|..+. +|..+. .+|+
T Consensus 122 ---------n~~~~L~~LPs---sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-------LP~~LP--~SLk 180 (426)
T PRK15386 122 ---------SATDSIKNVPN---GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-------LPEKLP--ESLQ 180 (426)
T ss_pred ---------CCCcccccCcc---hHhheeccccccccccccccccCCcccEEEecCCCccc-------Cccccc--ccCc
Confidence 23444555653 4556665432 1 123554 8999998888653 144443 5888
Q ss_pred eEeeecCCC-CCcCCCCCccccccceeeccCchhH
Q 048322 431 SLKIWNCPN-LTLFPEVGLPSSLLDLYVNNCPRLK 464 (498)
Q Consensus 431 ~L~l~~c~~-l~~lp~~~~~~sL~~L~i~~c~~l~ 464 (498)
.|.++.+.. .-.++...+|+++ .|.+.+|-.+.
T Consensus 181 ~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 181 SITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred EEEecccccccccCccccccccc-EechhhhcccC
Confidence 888876431 1133444566778 88888886554
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.38 E-value=5.9e-08 Score=91.51 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYG 244 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~ 244 (498)
+.-..+.+..|++..+|..... .+++|+.|+|+++ .+..+.+ |..+++|-.|.+-+.+.++++|...|+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccCCcccCChhhcc-chhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4556677777777777765443 5777777777774 4555543 666777777777666677777776655
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.36 E-value=1.2e-08 Score=99.42 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=48.2
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-------cccCCCCCCccEEeEeC
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-------WIGDPLFSKIEFLELEN 208 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-------~~~~~~l~~L~~L~l~~ 208 (498)
.+....+|+.|.++++.- .......+.+.+...+++++|.++++.....+. .+. .+++|+.|++++
T Consensus 18 ~~~~l~~L~~l~l~~~~l-----~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~ 90 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTL-----GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT--KGCGLQELDLSD 90 (319)
T ss_pred HHHHHhhccEEeecCCCC-----cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH--hcCceeEEEccC
Confidence 344556688888876641 112223445555566778888777765432221 222 356777777777
Q ss_pred CCCCCCCCC-CCCcc---ccceeecccc
Q 048322 209 CNNCVSLPS-LGLLS---SLKHLAVKGL 232 (498)
Q Consensus 209 c~~~~~lp~-i~~l~---~L~~L~l~~~ 232 (498)
|......+. +..+. +|++|++++|
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCC
Confidence 654333332 32332 3666666654
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.33 E-value=4.6e-08 Score=92.22 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--
Q 048322 379 PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL-- 448 (498)
Q Consensus 379 ~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~-- 448 (498)
.+++|+.|++++| .+.+...+++|.+.. +++..+. ...+..++.|+.|++.+ ++++.+..+.+
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~-----~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVS-----SGMFQGLSGLKTLSLYD-NQITTVAPGAFQT 344 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHH-----HHhhhccccceeeeecC-CeeEEEecccccc
Confidence 3478888888888 345556688887766 3443221 33567899999999999 57776644322
Q ss_pred cccccceeeccCc
Q 048322 449 PSSLLDLYVNNCP 461 (498)
Q Consensus 449 ~~sL~~L~i~~c~ 461 (498)
..+|.+|.+-..|
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 3678888875443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.33 E-value=3.3e-07 Score=89.25 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=21.9
Q ss_pred CCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecC
Q 048322 397 QILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNC 437 (498)
Q Consensus 397 p~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c 437 (498)
+.|++|++.+|. ++.. ....+...+..+++|++++++++
T Consensus 250 ~~L~~L~l~~n~-i~~~-~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCND-ITDD-GAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCCC-CCcH-HHHHHHHHHhcCCCccEEECCCC
Confidence 567777777763 3210 00111334455678888888875
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=4.4e-07 Score=78.76 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
++.++++|++.|+....+. .++. .+.+|+.|++++| .++.++.+..+++|+.|++++ +.+++++..+.. .+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~-~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~-----~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGA-TLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGLDK-----NL 87 (175)
T ss_dssp --------------------S--T-T-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHHHH-----H-
T ss_pred ccccccccccccccccccc-chhh-hhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccchHH-----hC
Confidence 3456788888888776654 3442 4778888888885 677788888888888888887 457777543321 37
Q ss_pred CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322 252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
|+|++|.+.++ .+..+. .-..+..+++|+.|++.++|--
T Consensus 88 p~L~~L~L~~N-~I~~l~----~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLN----ELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS----SCC----CCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCC-cCCChH----HhHHHHcCCCcceeeccCCccc
Confidence 88888888765 444443 1122334889999999988753
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=1.3e-08 Score=96.62 Aligned_cols=276 Identities=15% Similarity=0.162 Sum_probs=169.0
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcccc-CCCCCCccEEeEeCCCCCCCCC--C
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIG-DPLFSKIEFLELENCNNCVSLP--S 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~l~~c~~~~~lp--~ 217 (498)
..|+.|.+....... ...+-.....++++.+|.+.|+...+-.+... ...+++|++|++..|..++..- .
T Consensus 138 g~lk~LSlrG~r~v~-------~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG-------DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCC-------cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 568888887654311 11111223457899999998887332222111 1157899999999998887543 2
Q ss_pred -CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCc
Q 048322 218 -LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 218 -i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
...+++|++|.++.|+.+..=+-..+. .....++.+...+|..++.-. --.... .+-+.++++..|..+
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~----rG~~~l~~~~~kGC~e~~le~l~~~~~~-----~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQ----RGCKELEKLSLKGCLELELEALLKAAAY-----CLEILKLNLQHCNQL 281 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHh----ccchhhhhhhhcccccccHHHHHHHhcc-----ChHhhccchhhhccc
Confidence 346899999999999877662222221 225556666666765543211 011111 455677788888665
Q ss_pred ccc----CCCCcchHHHH-HHhcccccc----cC-CCCccccEEEecCCCcceec---C-CCCCCCccEEEEeccEeeee
Q 048322 296 SGK----LPELLPSLEIL-VSKCEKLVV----SL-SSYPRLCRLEVDECKELVCR---T-PIDSKLIKFMTISNSSLDMI 361 (498)
Q Consensus 296 ~~~----lp~~l~~L~~L-i~~~~~l~~----~~-~~l~~L~~L~l~~~~~~~~~---~-~~~~~~L~~L~l~~~~l~~~ 361 (498)
+.. +......|+.| ..+|..... .+ ...++|+.|.+..|..+.-. . ....+.|+.+++..|.....
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 511 11234566777 777877543 12 23789999999999875521 1 12367888888877643332
Q ss_pred cCCCCccCCCCCCcCCCCCCCCCeEEecCC-------------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCC
Q 048322 362 GCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTS 428 (498)
Q Consensus 362 ~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~ 428 (498)
. .+.++..+-+.|+.|.++.| ...++..|..+.+.+|+.++.- .-+.+...++
T Consensus 362 ~---------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-----~Le~l~~c~~ 427 (483)
T KOG4341|consen 362 G---------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-----TLEHLSICRN 427 (483)
T ss_pred h---------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-----HHHHHhhCcc
Confidence 2 12233333367888888877 1134455999999999988531 1234567789
Q ss_pred cCeEeeecCCCCCcCCCC
Q 048322 429 LQSLKIWNCPNLTLFPEV 446 (498)
Q Consensus 429 L~~L~l~~c~~l~~lp~~ 446 (498)
|+.+++.+|.....-+..
T Consensus 428 Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAIS 445 (483)
T ss_pred cceeeeechhhhhhhhhH
Confidence 999999999887665543
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3.6e-06 Score=82.14 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=24.9
Q ss_pred CCcCeEeeecCCCCCcCCCCCccccccceeeccC
Q 048322 427 TSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNC 460 (498)
Q Consensus 427 ~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c 460 (498)
++|++|.+.+|..+. +|. ++|.+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE-KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Ccc-cccccCcEEEeccc
Confidence 589999999987653 453 47889999998765
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.9e-07 Score=88.10 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=75.8
Q ss_pred CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC---C-CCCccccceeeccccccceecCccccCCCC
Q 048322 172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP---S-LGLLSSLKHLAVKGLKKLKSIESEVYGEGF 247 (498)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp---~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 247 (498)
++.+|+++.+.++.....+.--....+++++.|+|+.+- +...- . ..+||+|+.|.++.+.......
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-------- 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-------- 189 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCcc--------
Confidence 346777788877765444421011157778888887742 22221 1 3456677777666542111111
Q ss_pred CCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc----ccCCCCcchHHHH-HHhccc-ccccCC
Q 048322 248 SMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS----GKLPELLPSLEIL-VSKCEK-LVVSLS 321 (498)
Q Consensus 248 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~----~~lp~~l~~L~~L-i~~~~~-l~~~~~ 321 (498)
+.... .+++|+.|.|+.| .++ +.+-..+|+|+.| +..... +....+
T Consensus 190 ----------------------s~~~~-----~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~ 241 (505)
T KOG3207|consen 190 ----------------------SNTTL-----LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS 241 (505)
T ss_pred ----------------------ccchh-----hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence 11111 1555555555555 221 1122234555555 444421 111222
Q ss_pred C--CccccEEEecCCCcceecC---CCCCCCccEEEEecc
Q 048322 322 S--YPRLCRLEVDECKELVCRT---PIDSKLIKFMTISNS 356 (498)
Q Consensus 322 ~--l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~ 356 (498)
. +..|++|+++++....++. ...++.|+.|.++.|
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 2 6778888888887776553 234777777777765
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.1e-07 Score=87.91 Aligned_cols=100 Identities=19% Similarity=0.334 Sum_probs=55.6
Q ss_pred CCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccc----cCCCCcchHHHH-HHhcccccccC--
Q 048322 250 PFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSG----KLPELLPSLEIL-VSKCEKLVVSL-- 320 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~----~lp~~l~~L~~L-i~~~~~l~~~~-- 320 (498)
.|++++.|+++.. -+..|. ..+... +|+|+.|+|+.+ .+.. ..-..+++|+.| +..|.--...+
T Consensus 144 ~~~~v~~LdLS~N-L~~nw~~v~~i~eq-----Lp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~ 216 (505)
T KOG3207|consen 144 ILPNVRDLDLSRN-LFHNWFPVLKIAEQ-----LPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW 216 (505)
T ss_pred hCCcceeecchhh-hHHhHHHHHHHHHh-----cccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHH
Confidence 4666666666543 234443 122222 899999999876 2320 111245667777 77775432222
Q ss_pred --CCCccccEEEecCCCcceecC--CCCCCCccEEEEecc
Q 048322 321 --SSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNS 356 (498)
Q Consensus 321 --~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~ 356 (498)
-.+|+|+.|.+..|....... ...+..|+.|+|++|
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 127777777777775333221 122667777777766
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=3.2e-06 Score=77.23 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=70.8
Q ss_pred CCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------CCCC
Q 048322 322 SYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------LEPG 395 (498)
Q Consensus 322 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------~~~~ 395 (498)
-+|.++.|+++.|....+.....+++|+.|++++|.+.- |. .+-..+.++++|.+++| ..+.
T Consensus 305 L~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~--~~----------Gwh~KLGNIKtL~La~N~iE~LSGL~K 372 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE--CV----------GWHLKLGNIKTLKLAQNKIETLSGLRK 372 (490)
T ss_pred hccceeEEeccccceeeehhhhhcccceEeecccchhHh--hh----------hhHhhhcCEeeeehhhhhHhhhhhhHh
Confidence 368899999999998888888889999999999872211 11 11123377888999888 2334
Q ss_pred CCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322 396 FQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN 439 (498)
Q Consensus 396 lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~ 439 (498)
+-+|..|++++ +++..+.. -.++++||.|+.|.+.++|.
T Consensus 373 LYSLvnLDl~~-N~Ie~lde----V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 373 LYSLVNLDLSS-NQIEELDE----VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhheeccccc-cchhhHHH----hcccccccHHHHHhhcCCCc
Confidence 44588888877 33433211 34688999999999988664
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.76 E-value=9.1e-06 Score=70.62 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=46.3
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCC-CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQ-PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS 214 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~ 214 (498)
.+.+..++++|+|..+. ....+.+. .+.+|+.|++++|....++. +. .+++|+.|++++| .++.
T Consensus 14 ~~~n~~~~~~L~L~~n~-----------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~--~L~~L~~L~L~~N-~I~~ 78 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ-----------ISTIENLGATLDKLEVLDLSNNQITKLEG-LP--GLPRLKTLDLSNN-RISS 78 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT-------TT--EEE--SS----S
T ss_pred ccccccccccccccccc-----------cccccchhhhhcCCCEEECCCCCCccccC-cc--ChhhhhhcccCCC-CCCc
Confidence 44556678888887664 11234554 35789999999999887764 33 4889999999984 6777
Q ss_pred CCC-C-CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 215 LPS-L-GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 215 lp~-i-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
++. + ..+|+|++|+++++ .+..+..- ..+..+++|+.|++.++|--..-. ...--+..+|+|+.|+-...
T Consensus 79 i~~~l~~~lp~L~~L~L~~N-~I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~~~---YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNN-KISDLNEL----EPLSSLPKLRVLSLEGNPVCEKKN---YRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS----SCCCC----GGGGG-TT--EEE-TT-GGGGSTT---HHHHHHHH-TT-SEETTEET
T ss_pred cccchHHhCCcCCEEECcCC-cCCChHHh----HHHHcCCCcceeeccCCcccchhh---HHHHHHHHcChhheeCCEEc
Confidence 754 4 35899999999874 46554331 123468999999998775422110 00001123788888876554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.70 E-value=4.1e-05 Score=54.22 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=21.0
Q ss_pred CccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCcc
Q 048322 200 KIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESE 241 (498)
Q Consensus 200 ~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~ 241 (498)
+|++|++++| .+..+|+ +..+++|++|++++ +.++.++..
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~ 43 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPD 43 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETT
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHH
Confidence 4555566554 4555553 55555556665554 234555443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.59 E-value=0.00011 Score=52.03 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=48.8
Q ss_pred cccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322 222 SSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 222 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
|+|++|++++| .+..++.+.+. .+++|++|+++++ .++.+.++.... +++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-----~l~~L~~L~l~~N-~l~~i~~~~f~~-----l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-----NLPNLETLDLSNN-NLTSIPPDAFSN-----LPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-----TGTTESEEEETSS-SESEEETTTTTT-----STTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-----CCCCCCEeEccCC-ccCccCHHHHcC-----CCCCCEEeCcCCc
Confidence 58999999996 79999987765 5999999999966 666666544333 9999999999884
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.46 E-value=7e-05 Score=75.27 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=91.5
Q ss_pred CCCCceEEEeecCCCCCCccccCCCCC-CccEEeEeCCCCCCCCC-CCCCccccceeeccccccceecCccccCCCCCCC
Q 048322 173 HKCIKKVAIRNYGGARFPLWIGDPLFS-KIEFLELENCNNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~~~p~~~~~~~l~-~L~~L~l~~c~~~~~lp-~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
...+..|.+.++....+|.... .+. +|+.|++++ +.+..+| +++.+++|+.|++..+ .+..++.... .
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~--~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~------~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIG--LLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLS------N 184 (394)
T ss_pred ccceeEEecCCcccccCccccc--cchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhh------h
Confidence 3667788888887777777766 343 788888877 4667775 4777888888888774 4666654322 2
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcc--cc---cccCCCCc
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCE--KL---VVSLSSYP 324 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~--~l---~~~~~~l~ 324 (498)
.+.|+.|.+++. .+..+.... + ....|++|.+.++... ..+..+..+..+ ...+. .+ ...+..++
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~-~-----~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEI-E-----LLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhheeccCC-ccccCchhh-h-----hhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhcccc
Confidence 566666666654 333332110 0 0334677777665322 344334444444 11111 11 12233355
Q ss_pred cccEEEecCCCcceecCCCCCCCccEEEEecc
Q 048322 325 RLCRLEVDECKELVCRTPIDSKLIKFMTISNS 356 (498)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 356 (498)
+++.|+++++....++....+.+++.|+++++
T Consensus 256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccceeccccccccccccccccCccCEEeccCc
Confidence 56666666655555444444555555555544
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=1.1e-05 Score=73.67 Aligned_cols=181 Identities=18% Similarity=0.154 Sum_probs=94.5
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC---
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--- 217 (498)
..++.|+|+...- . .....--|.++++|+.|++.|+.... |-...-..=.+|+.|+|+.|+.+++...
T Consensus 185 sRlq~lDLS~s~i------t--~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI------T--VSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcchhhe------e--HHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHH
Confidence 4577787765431 0 11122233556778888887765321 1111100235688888888777765542
Q ss_pred CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG 297 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 297 (498)
+..++.|..|+|+.|...++.-.-... ..-++|+.|+++++...-+.. .. ..-...+|+|.+|++++|..++.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~s-h~--~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKS-HL--STLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhh-HH--HHHHHhCCceeeeccccccccCc
Confidence 566777778877777544332111111 123466667776653211110 00 00012267777888877755541
Q ss_pred cCC---CCcchHHHH-HHhcccccc----cCCCCccccEEEecCCCcc
Q 048322 298 KLP---ELLPSLEIL-VSKCEKLVV----SLSSYPRLCRLEVDECKEL 337 (498)
Q Consensus 298 ~lp---~~l~~L~~L-i~~~~~l~~----~~~~l~~L~~L~l~~~~~~ 337 (498)
..- ..|+.|+.| ++.|..+.. .+.+.|+|.+|++.+|-..
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 110 124566666 777765431 2344778888888777443
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=7.2e-06 Score=74.92 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=112.3
Q ss_pred hhhcCCCC-CCCceEEEeecCCCC--CCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCcc
Q 048322 166 VLDILQPH-KCIKKVAIRNYGGAR--FPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESE 241 (498)
Q Consensus 166 ~l~~l~~~-~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~ 241 (498)
+.+...++ +.|++|+++....+. +...+. ++.+|+.|.|.+...-..+-. +.+=.+|+.|+|+.|.++++-...
T Consensus 176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence 33333444 569999999765431 111122 577888888887532222222 677789999999999888765433
Q ss_pred ccCCCCCCCCCCCceeeccCCCccccccc-cccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccC
Q 048322 242 VYGEGFSMPFPSLKILRFENLPEWWHWDT-DIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSL 320 (498)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~ 320 (498)
.. +..+..|..|++++|.-...... .+.. .-++|+.|+|+||..-- - -..+..|...|
T Consensus 254 ll----~~scs~L~~LNlsWc~l~~~~Vtv~V~h-----ise~l~~LNlsG~rrnl---~--~sh~~tL~~rc------- 312 (419)
T KOG2120|consen 254 LL----LSSCSRLDELNLSWCFLFTEKVTVAVAH-----ISETLTQLNLSGYRRNL---Q--KSHLSTLVRRC------- 312 (419)
T ss_pred HH----HHhhhhHhhcCchHhhccchhhhHHHhh-----hchhhhhhhhhhhHhhh---h--hhHHHHHHHhC-------
Confidence 22 13588899999998855444331 1111 14689999999985421 1 12344444444
Q ss_pred CCCccccEEEecCCCcce---ecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC
Q 048322 321 SSYPRLCRLEVDECKELV---CRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL 391 (498)
Q Consensus 321 ~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~ 391 (498)
|+|.+|++++|..+. +.....++.|++|.++.|..-+. +.+-.+ .+.|+|.+|++.+|
T Consensus 313 ---p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p---------~~~~~l-~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 ---PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP---------ETLLEL-NSKPSLVYLDVFGC 373 (419)
T ss_pred ---CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCCh---------HHeeee-ccCcceEEEEeccc
Confidence 455677887776655 22334477788888766511110 000011 34578888888887
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.27 E-value=0.00023 Score=75.52 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 175 ~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
.+..|++.+++.. .+|..+. .+++|+.|+|++|...+.+|. ++.+++|+.|+++++.-...+|..+. .++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~------~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG------QLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh------cCC
Confidence 3677888887753 5677777 589999999999876678886 89999999999998754445665443 488
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
+|+.|+++++ .+.+..+...+. .+.++..+++.+++.+.
T Consensus 491 ~L~~L~Ls~N-~l~g~iP~~l~~----~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 491 SLRILNLNGN-SLSGRVPAALGG----RLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCEEECcCC-cccccCChHHhh----ccccCceEEecCCcccc
Confidence 9999999877 344333221111 13566778888776654
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.26 E-value=0.00023 Score=71.52 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=71.3
Q ss_pred CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCC-CCCCccEEEEeccE-e
Q 048322 281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPI-DSKLIKFMTISNSS-L 358 (498)
Q Consensus 281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-l 358 (498)
+++|+.|++++| .+. .+|. .....+.|+.|+++++....++... .+..|++|.++++. +
T Consensus 162 l~~L~~L~l~~N-~l~-~l~~-----------------~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 162 LPNLKNLDLSFN-DLS-DLPK-----------------LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred cccccccccCCc-hhh-hhhh-----------------hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce
Confidence 788888888887 343 4443 1224678888888888877766653 35558888887762 1
Q ss_pred eeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCe
Q 048322 359 DMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQS 431 (498)
Q Consensus 359 ~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~ 431 (498)
....+ + ..+.++..|.+.++ .++.+++|+.|+++++ .++.+ +. +..+.+|+.
T Consensus 223 ~~~~~------------~-~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i------~~-~~~~~~l~~ 281 (394)
T COG4886 223 ELLSS------------L-SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSI------SS-LGSLTNLRE 281 (394)
T ss_pred ecchh------------h-hhcccccccccCCceeeeccchhccccccceeccccc-ccccc------cc-ccccCccCE
Confidence 11100 0 11133444444444 3445566777777663 33332 33 667777777
Q ss_pred EeeecCCCCCcCC
Q 048322 432 LKIWNCPNLTLFP 444 (498)
Q Consensus 432 L~l~~c~~l~~lp 444 (498)
|++++.......|
T Consensus 282 L~~s~n~~~~~~~ 294 (394)
T COG4886 282 LDLSGNSLSNALP 294 (394)
T ss_pred EeccCccccccch
Confidence 7777744433333
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.24 E-value=0.0001 Score=69.12 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=48.5
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC----CCCcccc---C--CCCCCccEEe
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA----RFPLWIG---D--PLFSKIEFLE 205 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~---~--~~l~~L~~L~ 205 (498)
..+..+..+++++|+.+.- ...-...+-+.|...++|++.+++..-.. ++|..+. . ...++|++|+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~-----G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTF-----GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHhcccCceEEEeccCCch-----hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 3455667777777766642 11112223344555567777777654322 2333221 0 0245777788
Q ss_pred EeCCCCCC-CCCC----CCCccccceeecccc
Q 048322 206 LENCNNCV-SLPS----LGLLSSLKHLAVKGL 232 (498)
Q Consensus 206 l~~c~~~~-~lp~----i~~l~~L~~L~l~~~ 232 (498)
||+|-.=. .++. +..+..|++|++.+|
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 77753211 2221 344667777777775
No 42
>PLN03150 hypothetical protein; Provisional
Probab=97.17 E-value=0.00062 Score=72.25 Aligned_cols=93 Identities=22% Similarity=0.251 Sum_probs=70.6
Q ss_pred CccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccc
Q 048322 200 KIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHV 278 (498)
Q Consensus 200 ~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 278 (498)
.++.|+|+++.....+|. ++.+++|+.|+++++.-...+|..+. .+++|+.|+++++ .+.+..+...+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~------~l~~L~~LdLs~N-~lsg~iP~~l~~--- 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------SITSLEVLDLSYN-SFNGSIPESLGQ--- 488 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh------CCCCCCEEECCCC-CCCCCCchHHhc---
Confidence 378899999876667887 99999999999999754446665543 4899999999987 555444333333
Q ss_pred cCCCccceeeeccCCCccccCCCCcch
Q 048322 279 DIFPRLQELSVVKCPKLSGKLPELLPS 305 (498)
Q Consensus 279 ~~l~~L~~L~l~~c~~l~~~lp~~l~~ 305 (498)
+++|+.|++++| .+.|.+|..+..
T Consensus 489 --L~~L~~L~Ls~N-~l~g~iP~~l~~ 512 (623)
T PLN03150 489 --LTSLRILNLNGN-SLSGRVPAALGG 512 (623)
T ss_pred --CCCCCEEECcCC-cccccCChHHhh
Confidence 899999999988 566788876544
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.16 E-value=5.4e-05 Score=75.28 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=107.1
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
..-...+++.+...++|..+. .|..|+.+.+..+ .+..+|. ++++..|.+|+|+. +.+..+|..++ +-
T Consensus 75 tdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC-------~l 143 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEAC--AFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLC-------DL 143 (722)
T ss_pred cchhhhhccccccccCchHHH--HHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCChhhh-------cC
Confidence 344566777788888888776 5777888888763 4566675 88899999999987 45777777665 33
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH--HHh-cccccccCCC---Cccc
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL--VSK-CEKLVVSLSS---YPRL 326 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L--i~~-~~~l~~~~~~---l~~L 326 (498)
-|+.|-+++. +++....++. . .+.|..|+.+.| ++. .+|..+..|++| +.- -+++. .+|. --.|
T Consensus 144 pLkvli~sNN-kl~~lp~~ig-~-----~~tl~~ld~s~n-ei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpL 213 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPEEIG-L-----LPTLAHLDVSKN-EIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPL 213 (722)
T ss_pred cceeEEEecC-ccccCCcccc-c-----chhHHHhhhhhh-hhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCce
Confidence 4777777765 4454443332 2 788889999877 554 788777666666 221 22233 3333 2346
Q ss_pred cEEEecCCCcceecCCC-CCCCccEEEEecc
Q 048322 327 CRLEVDECKELVCRTPI-DSKLIKFMTISNS 356 (498)
Q Consensus 327 ~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~ 356 (498)
.+|+++.|....++-.+ .+..|++|.+.+|
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccC
Confidence 77888877766665433 3777888888776
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.15 E-value=6.1e-05 Score=69.04 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccc
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKG 231 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~ 231 (498)
..|..|++++|.+..+-.++. ..|.++.|+++++ .+..+..+..+++|++|++++
T Consensus 284 q~LtelDLS~N~I~~iDESvK--L~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVK--LAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSG 338 (490)
T ss_pred hhhhhccccccchhhhhhhhh--hccceeEEecccc-ceeeehhhhhcccceEeeccc
Confidence 344455555554444444433 3455555555542 333333344455555555544
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.94 E-value=9.7e-05 Score=73.50 Aligned_cols=147 Identities=21% Similarity=0.249 Sum_probs=94.1
Q ss_pred hhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccC
Q 048322 166 VLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYG 244 (498)
Q Consensus 166 ~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~ 244 (498)
+++.+..+..|.+|+++.+....+|..++ .--|+.|-+++ ++++.+|. +|.++.|..|+.+.| .+..+|....+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC---~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~ 187 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLC---DLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY 187 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhh---cCcceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhh
Confidence 34555566778888888888888888777 23377888887 47888887 888888888888875 47777776655
Q ss_pred CCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH---HHhcccccccCC
Q 048322 245 EGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL---VSKCEKLVVSLS 321 (498)
Q Consensus 245 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L---i~~~~~l~~~~~ 321 (498)
+.+|+.|.+... .+..+..+.. --.|.+|+++ |.++. .+|-.|.+++.| ..+|+-+. +-|
T Consensus 188 ------l~slr~l~vrRn-~l~~lp~El~-------~LpLi~lDfS-cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP 250 (722)
T KOG0532|consen 188 ------LTSLRDLNVRRN-HLEDLPEELC-------SLPLIRLDFS-CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP 250 (722)
T ss_pred ------HHHHHHHHHhhh-hhhhCCHHHh-------CCceeeeecc-cCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence 677777776544 3333332211 1246777776 44665 788777766666 34444443 222
Q ss_pred C-------CccccEEEecCC
Q 048322 322 S-------YPRLCRLEVDEC 334 (498)
Q Consensus 322 ~-------l~~L~~L~l~~~ 334 (498)
. ..-.++|++..|
T Consensus 251 AqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHHhccceeeeeeecchhc
Confidence 1 233456666555
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.90 E-value=0.00061 Score=44.34 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=15.6
Q ss_pred CccEEeEeCCCCCCCCCC-CCCccccceeecccc
Q 048322 200 KIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGL 232 (498)
Q Consensus 200 ~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~ 232 (498)
+|++|++++| .++.+|+ +++|++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555555553 4445555 555555555555553
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.76 E-value=6.4e-05 Score=76.79 Aligned_cols=55 Identities=29% Similarity=0.327 Sum_probs=30.2
Q ss_pred ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC---CccccccceeeccCch
Q 048322 399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV---GLPSSLLDLYVNNCPR 462 (498)
Q Consensus 399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~c~~ 462 (498)
|+.|.+++ +.++.+ .++.+|.+|+.|+++++ -|....+- ..+.+|++|++.|+|-
T Consensus 234 L~~L~lrn-N~l~tL-------~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRN-NALTTL-------RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeecc-cHHHhh-------hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666666 334332 34566777777777662 33322221 2236677777777663
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.67 E-value=0.00083 Score=71.37 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCccceeeeccCCCccccCC--CCcchHHHH-HHhc-----ccccccCCCCccccEEEecCCCccee--------cCCCC
Q 048322 281 FPRLQELSVVKCPKLSGKLP--ELLPSLEIL-VSKC-----EKLVVSLSSYPRLCRLEVDECKELVC--------RTPID 344 (498)
Q Consensus 281 l~~L~~L~l~~c~~l~~~lp--~~l~~L~~L-i~~~-----~~l~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~ 344 (498)
||+|..|+|+++ +++ .+. +.+.+|+.| +.+- ..+. .+-.+++|+.|||+....... .....
T Consensus 172 FpNL~sLDIS~T-nI~-nl~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 172 FPNLRSLDISGT-NIS-NLSGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred cCccceeecCCC-Ccc-CcHHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 677777777766 332 221 123333333 2221 1111 233477788888876554431 12223
Q ss_pred CCCccEEEEecc
Q 048322 345 SKLIKFMTISNS 356 (498)
Q Consensus 345 ~~~L~~L~l~~~ 356 (498)
+|.|+.|+.++.
T Consensus 249 LpeLrfLDcSgT 260 (699)
T KOG3665|consen 249 LPELRFLDCSGT 260 (699)
T ss_pred CccccEEecCCc
Confidence 666666666654
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.65 E-value=0.00057 Score=69.05 Aligned_cols=188 Identities=19% Similarity=0.169 Sum_probs=112.4
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCC
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSL 218 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i 218 (498)
....+..+.+.++. ...+...+..+.+|..|++.++....+...+. .+++|++|++++ +.++.+.++
T Consensus 70 ~l~~l~~l~l~~n~----------i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~--~~~~L~~L~ls~-N~I~~i~~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL----------IAKILNHLSKLKSLEALDLYDNKIEKIENLLS--SLVNLQVLDLSF-NKITKLEGL 136 (414)
T ss_pred HhHhHHhhccchhh----------hhhhhcccccccceeeeeccccchhhcccchh--hhhcchheeccc-cccccccch
Confidence 34455555555553 22244556777889999999888777665444 588999999998 478888888
Q ss_pred CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcccc
Q 048322 219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGK 298 (498)
Q Consensus 219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 298 (498)
..++.|+.|++.++ .+..+... ..++.|+.+++.++. +..+... . ...+.+|+.+.+.++...
T Consensus 137 ~~l~~L~~L~l~~N-~i~~~~~~-------~~l~~L~~l~l~~n~-i~~ie~~----~-~~~~~~l~~l~l~~n~i~--- 199 (414)
T KOG0531|consen 137 STLTLLKELNLSGN-LISDISGL-------ESLKSLKLLDLSYNR-IVDIEND----E-LSELISLEELDLGGNSIR--- 199 (414)
T ss_pred hhccchhhheeccC-cchhccCC-------ccchhhhcccCCcch-hhhhhhh----h-hhhccchHHHhccCCchh---
Confidence 88888999999885 45555431 236677777776652 2222210 0 122778888888876332
Q ss_pred CCCCcchHHHH-HHh--ccccc--ccCCCCcc--ccEEEecCCCccee-cCCCCCCCccEEEEecc
Q 048322 299 LPELLPSLEIL-VSK--CEKLV--VSLSSYPR--LCRLEVDECKELVC-RTPIDSKLIKFMTISNS 356 (498)
Q Consensus 299 lp~~l~~L~~L-i~~--~~~l~--~~~~~l~~--L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~ 356 (498)
....+..+..+ ..+ -+.+. ..++.+.. |+.+++.++..... .....+..+..|++.++
T Consensus 200 ~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 200 EIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred cccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 22233444444 221 11111 12233333 77777777776655 44455666666666654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.61 E-value=0.0013 Score=42.83 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
++|++|+++++....+|..+. .|++|+.|++++| .++.+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHh--CCCCCCEEEecCC-CCCCCcC
Confidence 478899999998888888666 6899999999986 4555554
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.34 E-value=0.00084 Score=71.36 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=40.6
Q ss_pred CCCceeeccCCCcc-ccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 252 PSLKILRFENLPEW-WHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 252 ~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
.+|++|++++...+ .+|...+... ||+|++|.+.+-.-... .+.....++|+|..|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~-----LPsL~sL~i~~~~~~~~-----------------dF~~lc~sFpNL~sLD 179 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM-----LPSLRSLVISGRQFDND-----------------DFSQLCASFPNLRSLD 179 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh-----CcccceEEecCceecch-----------------hHHHHhhccCccceee
Confidence 35666666554333 3444222222 89999999876411110 0111223355566666
Q ss_pred ecCCCcceecCCCCCCCccEEEEe
Q 048322 331 VDECKELVCRTPIDSKLIKFMTIS 354 (498)
Q Consensus 331 l~~~~~~~~~~~~~~~~L~~L~l~ 354 (498)
|+++....+.+...+.+|+.|.+.
T Consensus 180 IS~TnI~nl~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 180 ISGTNISNLSGISRLKNLQVLSMR 203 (699)
T ss_pred cCCCCccCcHHHhccccHHHHhcc
Confidence 666555444444445555555554
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.03 E-value=0.00031 Score=72.51 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCCCceEEEeecCCCCC---CccccCCCCCCccEEeEeC-CCCCCCCC----C-CCCccccceeeccccccceecCcccc
Q 048322 173 HKCIKKVAIRNYGGARF---PLWIGDPLFSKIEFLELEN-CNNCVSLP----S-LGLLSSLKHLAVKGLKKLKSIESEVY 243 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~l~~-c~~~~~lp----~-i~~l~~L~~L~l~~~~~l~~i~~~~~ 243 (498)
.++|+.|.+.++..... -.... ..++|+.|++++ |......+ . ...+++|+.|++..|..+....-...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 47777777777653322 11122 467888888877 33333222 1 23357788888888766555443333
Q ss_pred CCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCc
Q 048322 244 GEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
. ..+++|+.|.+.+|..++.-. ..+. ..+++|++|++++|..+
T Consensus 265 ~----~~c~~L~~L~l~~c~~lt~~gl~~i~-----~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 A----SRCPNLETLSLSNCSNLTDEGLVSIA-----ERCPSLRELDLSGCHGL 308 (482)
T ss_pred H----hhCCCcceEccCCCCccchhHHHHHH-----HhcCcccEEeeecCccc
Confidence 2 237788888877776543322 1111 12778888888888665
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.0031 Score=58.19 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=45.9
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCC-CCCCCC
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNN-CVSLPS 217 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~-~~~lp~ 217 (498)
..++++.|+|.||. ..+ -.++..-+..++.|++|+++.|.....-..+. ..+.+|++|.|.+... ++...+
T Consensus 69 ~~~~v~elDL~~N~----iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL----ISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred Hhhhhhhhhcccch----hcc---HHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhh
Confidence 35778888888885 112 22333334444888888888776432211111 1356788887766311 112222
Q ss_pred -CCCccccceeeccc
Q 048322 218 -LGLLSSLKHLAVKG 231 (498)
Q Consensus 218 -i~~l~~L~~L~l~~ 231 (498)
+..+|.++.|.++.
T Consensus 141 ~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSD 155 (418)
T ss_pred hhhcchhhhhhhhcc
Confidence 44566666666654
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0029 Score=58.37 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCCCceEEEeecCCCCCCcccc-CCCCCCccEEeEeCCCCCCCCCCC-CCccccceeeccccccceecCccccCCCCCCC
Q 048322 173 HKCIKKVAIRNYGGARFPLWIG-DPLFSKIEFLELENCNNCVSLPSL-GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~l~~c~~~~~lp~i-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
.++++.|++.+|.......-.. -.++|.|+.|+|+.+..-..+..+ ..+.+|+.|.+.|. +++..... +++..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT----~L~w~~~~-s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT----GLSWTQST-SSLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC----CCChhhhh-hhhhc
Confidence 4788999999887654322111 127899999999875422222221 34557888888662 22221111 23344
Q ss_pred CCCCceeeccC
Q 048322 251 FPSLKILRFEN 261 (498)
Q Consensus 251 ~~~L~~L~l~~ 261 (498)
+|+++.|.++.
T Consensus 145 lP~vtelHmS~ 155 (418)
T KOG2982|consen 145 LPKVTELHMSD 155 (418)
T ss_pred chhhhhhhhcc
Confidence 56666665543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.75 E-value=0.0031 Score=59.40 Aligned_cols=257 Identities=15% Similarity=0.106 Sum_probs=119.7
Q ss_pred hHHHhhhcCCCCCCCceEEEeecCC-CCCCccccC--CCCCCccEEeEeCCCCCC----CCCCCCCccccceeecccccc
Q 048322 162 VEEHVLDILQPHKCIKKVAIRNYGG-ARFPLWIGD--PLFSKIEFLELENCNNCV----SLPSLGLLSSLKHLAVKGLKK 234 (498)
Q Consensus 162 ~~~~~l~~l~~~~~L~~L~l~~~~~-~~~p~~~~~--~~l~~L~~L~l~~c~~~~----~lp~i~~l~~L~~L~l~~~~~ 234 (498)
....+.+.+.+...+.+|+++|+.. .+-..|+.+ .+.++|+.-++++- ..+ .+|+ .|+.|
T Consensus 18 d~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e-----~L~~l------- 84 (382)
T KOG1909|consen 18 DEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPE-----ALKML------- 84 (382)
T ss_pred hhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHH-----HHHHH-------
Confidence 3456777778889999999999873 333344432 13456666666652 111 1221 01100
Q ss_pred ceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcc
Q 048322 235 LKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCE 314 (498)
Q Consensus 235 l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~ 314 (498)
.... ...|+|++|+++++.--..-..+. ..-+..+..|++|.+.+| .+ =|..=..|-.-+..|.
T Consensus 85 ----~~aL------~~~~~L~~ldLSDNA~G~~g~~~l--~~ll~s~~~L~eL~L~N~-Gl---g~~ag~~l~~al~~l~ 148 (382)
T KOG1909|consen 85 ----SKAL------LGCPKLQKLDLSDNAFGPKGIRGL--EELLSSCTDLEELYLNNC-GL---GPEAGGRLGRALFELA 148 (382)
T ss_pred ----HHHH------hcCCceeEeeccccccCccchHHH--HHHHHhccCHHHHhhhcC-CC---ChhHHHHHHHHHHHHH
Confidence 0001 113455555554431100000000 000122567777777777 22 1211111111122233
Q ss_pred cccccCCCCccccEEEecCCCcceecC------CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC---CCCCCCCe
Q 048322 315 KLVVSLSSYPRLCRLEVDECKELVCRT------PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP---KPMTTTNV 385 (498)
Q Consensus 315 ~l~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp---~~l~~L~~ 385 (498)
. ....++-+.|+.+...+|.....+. ....+.|+.+.+..|.+...+. +.+. ..-++|+.
T Consensus 149 ~-~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~----------~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 149 V-NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV----------TALAEALEHCPHLEV 217 (382)
T ss_pred H-HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh----------HHHHHHHHhCCccee
Confidence 1 1245556777777777665433110 1124677777776653322211 0000 11167777
Q ss_pred EEecCC------------CCCCCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCCCCCc------CCCC
Q 048322 386 LEFGKL------------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCPNLTL------FPEV 446 (498)
Q Consensus 386 L~i~~~------------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~------lp~~ 446 (498)
|++.+| ....+|.|+.|++++|..=+. ....+-..+ ...++|+.|.+.+|.--.. .+-.
T Consensus 218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~--Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE--GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA 295 (382)
T ss_pred eecccchhhhHHHHHHHHHhcccchheeecccccccccc--cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence 888777 345667788888887753210 000000111 2357788888777532111 0101
Q ss_pred CccccccceeeccCc
Q 048322 447 GLPSSLLDLYVNNCP 461 (498)
Q Consensus 447 ~~~~sL~~L~i~~c~ 461 (498)
. -+.|..|++++|.
T Consensus 296 e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 296 E-KPDLEKLNLNGNR 309 (382)
T ss_pred c-chhhHHhcCCccc
Confidence 1 2567777777764
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.45 E-value=0.025 Score=49.45 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=47.6
Q ss_pred CCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322 198 FSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH 277 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 277 (498)
+.+...++|++ +.+..++.+..++.|..|.+.+ +.++.|...+.. .+++|+.|.+.++ ++.++. .-..
T Consensus 41 ~d~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~-----~~p~l~~L~LtnN-si~~l~----dl~p 108 (233)
T KOG1644|consen 41 LDQFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDT-----FLPNLKTLILTNN-SIQELG----DLDP 108 (233)
T ss_pred ccccceecccc-cchhhcccCCCccccceEEecC-Ccceeeccchhh-----hccccceEEecCc-chhhhh----hcch
Confidence 34555666766 3566666666677777777765 456666654432 4666777776654 333332 0011
Q ss_pred ccCCCccceeeeccCC
Q 048322 278 VDIFPRLQELSVVKCP 293 (498)
Q Consensus 278 ~~~l~~L~~L~l~~c~ 293 (498)
+..+|.|++|.+-+++
T Consensus 109 La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP 124 (233)
T ss_pred hccCCccceeeecCCc
Confidence 1226777777776664
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.00062 Score=62.02 Aligned_cols=60 Identities=28% Similarity=0.381 Sum_probs=29.1
Q ss_pred CCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCC
Q 048322 198 FSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLP 263 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (498)
++.|+.|.|+- +.+..+.++..+.+|++|+|..+ .+..+..-+|- +.+|+|+.|+|..++
T Consensus 40 Mp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YL----knlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKN-CIESLDELEYL----KNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeec-cccccchhHHHHHHHHHHHHHhc-ccccHHHHHHH----hcCchhhhHhhccCC
Confidence 55555555554 34555555555556666655542 23333322221 235555555554443
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.20 E-value=0.00071 Score=69.79 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCccEEeEeCCCCCCC--C-CCCCCccccceeecccc-ccceecCccccCCCCCCCCCCCceeeccCCCcccccc-ccc
Q 048322 198 FSKIEFLELENCNNCVS--L-PSLGLLSSLKHLAVKGL-KKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDI 272 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~--l-p~i~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~ 272 (498)
+++|+.|.+.+|..+.. + +....+++|+.|++++| ......+.... .....+++|+.|++..+..++... ...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchhHHHH
Confidence 57777777777766665 2 22556777888887763 22222221000 011235667777776665443332 111
Q ss_pred cCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcc
Q 048322 273 KGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKEL 337 (498)
Q Consensus 273 ~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~ 337 (498)
... +++|++|.+.+|+.++ . . .+.. ....+++|++|+++.|...
T Consensus 265 ~~~-----c~~L~~L~l~~c~~lt-~--~---gl~~----------i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASR-----CPNLETLSLSNCSNLT-D--E---GLVS----------IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred Hhh-----CCCcceEccCCCCccc-h--h---HHHH----------HHHhcCcccEEeeecCccc
Confidence 111 5677777766665432 0 0 0110 1122556777777777665
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.35 E-value=0.015 Score=58.71 Aligned_cols=189 Identities=19% Similarity=0.135 Sum_probs=110.0
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP 216 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp 216 (498)
+...++|..|++.-+. ...+...+..+.+|++|+++++.+..+...- .++.|+.|++.+| .+..++
T Consensus 91 l~~~~~l~~l~l~~n~----------i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~L~l~~N-~i~~~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK----------IEKIENLLSSLVNLQVLDLSFNKITKLEGLS---TLTLLKELNLSGN-LISDIS 156 (414)
T ss_pred cccccceeeeeccccc----------hhhcccchhhhhcchheeccccccccccchh---hccchhhheeccC-cchhcc
Confidence 6678888888886653 1112222555699999999999887765532 4777999999995 788888
Q ss_pred CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
.+..+++|+.++++++. +..+.... ...+.+|+.+.+.++.. ..+.. +..+..+..+++.++ .+.
T Consensus 157 ~~~~l~~L~~l~l~~n~-i~~ie~~~-----~~~~~~l~~l~l~~n~i-~~i~~-------~~~~~~l~~~~l~~n-~i~ 221 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNR-IVDIENDE-----LSELISLEELDLGGNSI-REIEG-------LDLLKKLVLLSLLDN-KIS 221 (414)
T ss_pred CCccchhhhcccCCcch-hhhhhhhh-----hhhccchHHHhccCCch-hcccc-------hHHHHHHHHhhcccc-cce
Confidence 88889999999998853 44444310 12477888888776522 22110 000222333333333 111
Q ss_pred ccCC--CCcc--hHHHH-HHhccccc--ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEec
Q 048322 297 GKLP--ELLP--SLEIL-VSKCEKLV--VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISN 355 (498)
Q Consensus 297 ~~lp--~~l~--~L~~L-i~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 355 (498)
.+- ..+. +|+.+ +...+.-. ..++.+..+..|++.++...........+.+..+....
T Consensus 222 -~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 222 -KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLND 286 (414)
T ss_pred -eccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCc
Confidence 111 0112 26666 44443322 34566778888888777655544444444444444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.15 E-value=0.063 Score=47.04 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=57.1
Q ss_pred hhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCC--CCCCCCCCCccccceeeccccccceecCcccc
Q 048322 166 VLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNN--CVSLPSLGLLSSLKHLAVKGLKKLKSIESEVY 243 (498)
Q Consensus 166 ~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~--~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~ 243 (498)
-++.+..++.|..|.+.+|.+..+-..+.. .+++|..|.|.+++. ++.+-++..+|.|++|.+-+++ ++.....
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~Y-- 131 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNY-- 131 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCc--
Confidence 345555567888888888887777555553 567888888887532 2345557778888888776643 2222110
Q ss_pred CCCCCCCCCCCceeeccCC
Q 048322 244 GEGFSMPFPSLKILRFENL 262 (498)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~ 262 (498)
..--+..+|+|+.|++.+.
T Consensus 132 R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeEEEEecCcceEeehhhh
Confidence 0011224777888877654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.24 E-value=0.025 Score=51.40 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCC--CCCCCCCC-CCCccccceeecccc
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENC--NNCVSLPS-LGLLSSLKHLAVKGL 232 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c--~~~~~lp~-i~~l~~L~~L~l~~~ 232 (498)
+|+.|++.+.+.+++-..- .+++|+.|.++.+ .....++. ...+|+|++|.++++
T Consensus 44 ~le~ls~~n~gltt~~~~P---~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFP---KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhhhccceeecccCC---CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3444444444433332211 3566777777665 23334443 344567777766663
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.12 E-value=0.058 Score=49.16 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=43.0
Q ss_pred ccceeeeccCCCccccCCC---CcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecC----CCCCCCccEEEE
Q 048322 283 RLQELSVVKCPKLSGKLPE---LLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRT----PIDSKLIKFMTI 353 (498)
Q Consensus 283 ~L~~L~l~~c~~l~~~lp~---~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l 353 (498)
..+.+.+.+|....+.+.. .+..|+.+ +.++.-.+ ..+|.+|+|++|.++.+..-...+ ....|+|++|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 3455666666544433443 34555656 55554422 267778888888888773222111 112477888887
Q ss_pred eccEee
Q 048322 354 SNSSLD 359 (498)
Q Consensus 354 ~~~~l~ 359 (498)
++|.+.
T Consensus 99 s~Nki~ 104 (260)
T KOG2739|consen 99 SGNKIK 104 (260)
T ss_pred cCCccc
Confidence 776443
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.11 E-value=0.006 Score=62.99 Aligned_cols=139 Identities=17% Similarity=0.112 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccC-CCCCCccccCCCCC-CccCCCchHHhHHHhhcccCCcccEEEEecCCCCCC
Q 048322 80 GSKIKDITSRLEQLCQDRIELGLQRIAG-GASSPTAAAHQRPP-SSSVPTERENAREAALCEKLNLHALTLEWGSQFDNS 157 (498)
Q Consensus 80 ~~~i~~i~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~~r~~-~~s~v~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 157 (498)
+.-|..++..|+.+..-+.--.+..... .+........|... +.+.--+.--+.+..+.=...++.|+|+.|..
T Consensus 124 ~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~---- 199 (1096)
T KOG1859|consen 124 AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF---- 199 (1096)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh----
Confidence 6678888888888866543322221110 01111112223321 11111122223444566678899999987752
Q ss_pred cChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322 158 RDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL 232 (498)
Q Consensus 158 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~ 232 (498)
. -.+.|..+++|++|+|+.|....+|..-.. .+ +|+.|+|++| .++.+-.+.+|++|+.|+++.+
T Consensus 200 ------~-~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~-gc-~L~~L~lrnN-~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 200 ------T-KVDNLRRLPKLKHLDLSYNCLRHVPQLSMV-GC-KLQLLNLRNN-ALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred ------h-hhHHHHhcccccccccccchhccccccchh-hh-hheeeeeccc-HHHhhhhHHhhhhhhccchhHh
Confidence 1 122455669999999999998888874331 23 4899999884 6777777888999999998864
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.65 E-value=0.074 Score=26.61 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=6.7
Q ss_pred CcCeEeeecCCCCCcCC
Q 048322 428 SLQSLKIWNCPNLTLFP 444 (498)
Q Consensus 428 ~L~~L~l~~c~~l~~lp 444 (498)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45566666553 55443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.0069 Score=55.42 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=70.4
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS 214 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~ 214 (498)
++-.+..+.++|++ |+...+ +..+- ...+.|++|.++-|.+..+.... .+++|+.|+|..| .+..
T Consensus 13 aK~sdl~~vkKLNc-wg~~L~-------DIsic---~kMp~lEVLsLSvNkIssL~pl~---rCtrLkElYLRkN-~I~s 77 (388)
T KOG2123|consen 13 AKCSDLENVKKLNC-WGCGLD-------DISIC---EKMPLLEVLSLSVNKISSLAPLQ---RCTRLKELYLRKN-CIES 77 (388)
T ss_pred HHhhHHHHhhhhcc-cCCCcc-------HHHHH---HhcccceeEEeeccccccchhHH---HHHHHHHHHHHhc-cccc
Confidence 34445667777877 444321 11122 23488999999999887775543 4789999999874 4444
Q ss_pred CC---CCCCccccceeeccccccceecCccccCCCCCCCCCCCceee
Q 048322 215 LP---SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILR 258 (498)
Q Consensus 215 lp---~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~ 258 (498)
+. .+.++|+|+.|+|..++....-|.++.. ..+..+|+|++|+
T Consensus 78 ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~-~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRR-KVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCCcccccchhHHH-HHHHHcccchhcc
Confidence 44 3678899999999987766655554322 2234578888776
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=0.018 Score=50.25 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCCCCccEEEEcCCCCCCCccccCCCCccCC-CCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCchh
Q 048322 393 EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQ-RLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCPRL 463 (498)
Q Consensus 393 ~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l 463 (498)
+..+++++.|.+.+|..+..|- -+.++ -.++|+.|+|++|+.+++-.-. .-+++|+.|.+++.|..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~-----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWC-----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHH-----HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4567778888888888886540 01111 3578999999999988875322 12478888888887754
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.063 Score=47.02 Aligned_cols=41 Identities=29% Similarity=0.584 Sum_probs=24.2
Q ss_pred CCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCcc
Q 048322 251 FPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
+++++.|.+.+|..+..|. ....+. .++|+.|+|++|+.++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~-----~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGL-----APSLQDLDLSGCPRIT 165 (221)
T ss_pred cchhhhheeccccchhhHHHHHhccc-----ccchheeeccCCCeec
Confidence 4455555666666666665 222222 6777777777777665
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.81 E-value=0.17 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=14.7
Q ss_pred ccceeeeccCCCccccCCCCcch
Q 048322 283 RLQELSVVKCPKLSGKLPELLPS 305 (498)
Q Consensus 283 ~L~~L~l~~c~~l~~~lp~~l~~ 305 (498)
+|++|++++| .++ .+|..|.+
T Consensus 1 ~L~~Ldls~n-~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EES-EEGTTTTT
T ss_pred CccEEECCCC-cCE-eCChhhcC
Confidence 4778888888 676 77765544
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.35 E-value=0.016 Score=47.35 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=35.3
Q ss_pred CCCcCCCCC----CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC
Q 048322 372 AGSSLPKPM----TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL 440 (498)
Q Consensus 372 ~l~~lp~~l----~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l 440 (498)
.++.+|..+ +.+++|++.+| .+..+|.|+.|+++.++-.. +|..+..|.+|-.|+..+ +.+
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~-------~p~vi~~L~~l~~Lds~~-na~ 135 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA-------EPRVIAPLIKLDMLDSPE-NAR 135 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc-------chHHHHHHHhHHHhcCCC-Ccc
Confidence 444444433 45566666666 23456677777777644221 255555555665565544 344
Q ss_pred CcCCC
Q 048322 441 TLFPE 445 (498)
Q Consensus 441 ~~lp~ 445 (498)
..+|-
T Consensus 136 ~eid~ 140 (177)
T KOG4579|consen 136 AEIDV 140 (177)
T ss_pred ccCcH
Confidence 44444
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.21 E-value=0.056 Score=44.32 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=43.1
Q ss_pred hhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeecccc
Q 048322 167 LDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGL 232 (498)
Q Consensus 167 l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~ 232 (498)
+..+....+|+..++++|....+|..+.. .++.++.|++++ +.+..+|. +..++.|+.|+++.+
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~-kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTI-KFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhh-ccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 33344446677778888887777776653 456777788777 36667775 666777777777653
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.41 E-value=2.4 Score=39.26 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=32.7
Q ss_pred CccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceec------CCCCCCCccEEEEe
Q 048322 282 PRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCR------TPIDSKLIKFMTIS 354 (498)
Q Consensus 282 ~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~ 354 (498)
.+|+++.+..+ |.-|.+...|-.+ +..| .+|+.|++.+|...... .....+.|+.|.+.
T Consensus 185 ~~lk~vki~qN----gIrpegv~~L~~~gl~y~----------~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 185 ENLKEVKIQQN----GIRPEGVTMLAFLGLFYS----------HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCceeEEeeec----CcCcchhHHHHHHHHHHh----------CcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 46777777665 2345544444444 4444 44556666666433211 11224556777776
Q ss_pred ccEe
Q 048322 355 NSSL 358 (498)
Q Consensus 355 ~~~l 358 (498)
+|-+
T Consensus 251 DCll 254 (388)
T COG5238 251 DCLL 254 (388)
T ss_pred chhh
Confidence 6633
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.85 E-value=1.7 Score=24.29 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=7.1
Q ss_pred CCcCeEeeecCCCCC
Q 048322 427 TSLQSLKIWNCPNLT 441 (498)
Q Consensus 427 ~~L~~L~l~~c~~l~ 441 (498)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 344555555554443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.35 E-value=7.3 Score=31.57 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=5.5
Q ss_pred CCCccccceeecc
Q 048322 218 LGLLSSLKHLAVK 230 (498)
Q Consensus 218 i~~l~~L~~L~l~ 230 (498)
+..+++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 3344455555443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.50 E-value=23 Score=28.57 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
.+|+.+.+.. ....++..... .+++|+.+.+.+ .+..++. +..+++|+.+.+.+ .+..++...+. .+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~-~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~-----~~ 80 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFS-NCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS-----NC 80 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTT-T-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT-----T-
T ss_pred CCCCEEEECC-CeeEeChhhcc-cccccccccccc--cccccceeeeecccccccccccc--ccccccccccc-----cc
Confidence 4566665543 22233322221 355777777765 3555554 66677788887754 46666655443 46
Q ss_pred CCCceeecc
Q 048322 252 PSLKILRFE 260 (498)
Q Consensus 252 ~~L~~L~l~ 260 (498)
++|+.+.+.
T Consensus 81 ~~l~~i~~~ 89 (129)
T PF13306_consen 81 TNLKNIDIP 89 (129)
T ss_dssp TTECEEEET
T ss_pred ccccccccC
Confidence 677777774
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=56.45 E-value=7.5 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=8.7
Q ss_pred CCceEEEeecCCCCCCcc
Q 048322 175 CIKKVAIRNYGGARFPLW 192 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~ 192 (498)
+|+.|++.+|....+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 445555555544444443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=56.45 E-value=7.5 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=8.7
Q ss_pred CCceEEEeecCCCCCCcc
Q 048322 175 CIKKVAIRNYGGARFPLW 192 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~ 192 (498)
+|+.|++.+|....+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 445555555544444443
No 77
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=52.40 E-value=11 Score=35.70 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=33.5
Q ss_pred CHHHHHHHHH-hcccccHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 048322 1 MIQAVLSDAE-EKRLTDEAVKMWLDELQDLAYDAEDILDGFGT 42 (498)
Q Consensus 1 ~i~a~L~da~-~~~~~~~~~~~Wl~~lrd~~yd~eDvlD~~~~ 42 (498)
++|.||+..- +...+....+..+.++-..||++|=|+|-+..
T Consensus 332 sLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 332 SLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred HhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhc
Confidence 4688999884 43444455899999999999999999998843
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=37.34 E-value=20 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=7.2
Q ss_pred CCceEEEeecCCCCCC
Q 048322 175 CIKKVAIRNYGGARFP 190 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p 190 (498)
+|+.|.+++|....+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3444444444444444
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=35.43 E-value=24 Score=18.98 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=7.7
Q ss_pred CccceeeeccCC
Q 048322 282 PRLQELSVVKCP 293 (498)
Q Consensus 282 ~~L~~L~l~~c~ 293 (498)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 678888888874
No 80
>PRK10869 recombination and repair protein; Provisional
Probab=32.89 E-value=1.5e+02 Score=31.38 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=47.1
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCcccccccccccCCCcccccchhhhhhHH
Q 048322 5 VLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIK 84 (498)
Q Consensus 5 ~L~da~~~~~~~~~~~~Wl~~lrd~~yd~eDvlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 84 (498)
++...+.-...|+.+......+.++.|.+||+.+++....... .+.| .++.
T Consensus 249 ~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~-------------------~~dp----------~~l~ 299 (553)
T PRK10869 249 AKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRL-------------------DLDP----------NRLA 299 (553)
T ss_pred HHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------CCCH----------HHHH
Confidence 3344444455578888899999999999999999996654211 0001 3477
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 048322 85 DITSRLEQLCQDRIELGL 102 (498)
Q Consensus 85 ~i~~~l~~i~~~~~~~~~ 102 (498)
+|..|+..+..-+.+||.
T Consensus 300 ~ie~Rl~~l~~L~rKyg~ 317 (553)
T PRK10869 300 ELEQRLSKQISLARKHHV 317 (553)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 777788888777777773
No 81
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=28.61 E-value=1.6e+02 Score=23.08 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 048322 15 TDEAVKMWLDELQDLAYDAEDILDGFGTQ 43 (498)
Q Consensus 15 ~~~~~~~Wl~~lrd~~yd~eDvlD~~~~~ 43 (498)
.++.+..-+.+|++++-++|++++.--..
T Consensus 6 ~~~~~~~l~~el~~L~d~lEevL~ssg~~ 34 (104)
T COG4575 6 TDDAIDQLLAELQELLDTLEEVLKSSGSL 34 (104)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44556778899999999999998766443
No 82
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=28.15 E-value=1e+02 Score=19.90 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHH
Q 048322 17 EAVKMWLDELQDLAYDAEDILDGFGT 42 (498)
Q Consensus 17 ~~~~~Wl~~lrd~~yd~eDvlD~~~~ 42 (498)
.....+..+|+.+..+-.|.+++|..
T Consensus 19 ~~~~~v~~~v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 19 ISRSEVIEEVSELLRGHPDLLEEFNR 44 (47)
T ss_dssp SCHHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCHHHHHHHHh
Confidence 33456888999999999999999964
No 83
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.84 E-value=1.1e+02 Score=19.48 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=13.1
Q ss_pred ccccEEEecCCCcceecCCCCCCCccEEEE
Q 048322 324 PRLCRLEVDECKELVCRTPIDSKLIKFMTI 353 (498)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 353 (498)
+++++|.+.+.-...+....-+++|++|.+
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCCeEEEECCccCccCCCCccCCCceEEEe
Confidence 355555554333333332333445555554
No 84
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=26.58 E-value=1.6e+02 Score=20.34 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHHh-cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 048322 3 QAVLSDAEE-KRLTDEAVKMWLDELQDLAYDAEDILDGFGTQA 44 (498)
Q Consensus 3 ~a~L~da~~-~~~~~~~~~~Wl~~lrd~~yd~eDvlD~~~~~~ 44 (498)
..+++-... ....++..+.++..++..+..+.++++++..-+
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s 63 (68)
T PF00512_consen 21 RGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFS 63 (68)
T ss_dssp HHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 233445569999999999999999999986654
No 85
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=26.23 E-value=67 Score=24.15 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH
Q 048322 21 MWLDELQDLAYDAEDILDGFGTQA 44 (498)
Q Consensus 21 ~Wl~~lrd~~yd~eDvlD~~~~~~ 44 (498)
.-++++|.|.+|.=|++|.|.--.
T Consensus 41 Nsin~~r~Al~dLv~~Ve~fq~v~ 64 (90)
T PF11328_consen 41 NSINQLRTALIDLVDVVENFQQVV 64 (90)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999997654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.28 E-value=27 Score=35.89 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.3
Q ss_pred ccccceeecccc
Q 048322 221 LSSLKHLAVKGL 232 (498)
Q Consensus 221 l~~L~~L~l~~~ 232 (498)
.|+|+.|+|+++
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 345555555553
Done!