Query 048322
Match_columns 498
No_of_seqs 376 out of 3277
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 14:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.9E-27 220.0 5.8 326 135-485 312-766 (768)
2 4eco_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 191.3 12.8 255 174-462 305-599 (636)
3 4fmz_A Internalin; leucine ric 99.8 1.2E-19 4.1E-24 177.8 10.7 273 137-461 62-344 (347)
4 4ecn_A Leucine-rich repeat pro 99.8 4.8E-19 1.6E-23 191.4 16.1 255 173-462 547-839 (876)
5 3o6n_A APL1; leucine-rich repe 99.8 7.3E-19 2.5E-23 175.1 14.3 276 136-461 64-350 (390)
6 2id5_A Lingo-1, leucine rich r 99.8 5E-18 1.7E-22 173.7 20.3 252 171-461 53-331 (477)
7 4fcg_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 166.0 17.0 126 281-458 182-309 (328)
8 3oja_B Anopheles plasmodium-re 99.8 7.1E-19 2.4E-23 184.9 13.2 277 135-461 69-356 (597)
9 3oja_B Anopheles plasmodium-re 99.8 2.1E-18 7.2E-23 181.3 15.0 296 139-491 49-357 (597)
10 3rgz_A Protein brassinosteroid 99.8 8.1E-19 2.8E-23 189.9 11.8 297 138-461 197-549 (768)
11 4fmz_A Internalin; leucine ric 99.8 9.8E-19 3.4E-23 171.2 10.8 268 138-461 41-322 (347)
12 4ecn_A Leucine-rich repeat pro 99.8 2.9E-18 9.9E-23 185.3 15.0 300 135-462 442-818 (876)
13 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-18 1.8E-22 163.6 14.1 240 175-464 51-305 (313)
14 4eco_A Uncharacterized protein 99.8 1.7E-18 5.9E-23 183.1 11.7 302 134-462 199-578 (636)
15 3vq2_A TLR4, TOLL-like recepto 99.8 1.8E-17 6.3E-22 174.7 18.7 254 170-461 281-556 (606)
16 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-17 4.2E-22 176.1 17.2 41 420-461 466-508 (606)
17 3v47_A TOLL-like receptor 5B a 99.7 3E-18 1E-22 174.2 11.8 120 324-461 275-406 (455)
18 3bz5_A Internalin-J, INLJ; leu 99.7 1.2E-17 4.1E-22 169.3 16.1 279 136-460 59-349 (457)
19 2z81_A CD282 antigen, TOLL-lik 99.7 6.1E-18 2.1E-22 176.2 13.8 111 136-262 45-158 (549)
20 1o6v_A Internalin A; bacterial 99.7 1.4E-17 4.9E-22 169.7 16.0 87 137-239 64-150 (466)
21 3o6n_A APL1; leucine-rich repe 99.7 2.5E-17 8.5E-22 164.0 16.5 295 139-491 43-351 (390)
22 3bz5_A Internalin-J, INLJ; leu 99.7 3.2E-17 1.1E-21 166.2 15.7 59 172-236 104-162 (457)
23 2id5_A Lingo-1, leucine rich r 99.7 9.1E-17 3.1E-21 164.3 19.0 250 174-461 32-307 (477)
24 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.7E-21 167.5 19.7 249 141-461 40-295 (622)
25 3t6q_A CD180 antigen; protein- 99.7 1.2E-17 3.9E-22 176.2 12.2 261 170-461 274-558 (606)
26 4fcg_A Uncharacterized protein 99.7 5.1E-17 1.7E-21 157.6 14.5 226 139-436 79-310 (328)
27 2z7x_B TOLL-like receptor 1, v 99.7 2.5E-17 8.4E-22 170.4 12.9 132 322-461 322-479 (520)
28 2z81_A CD282 antigen, TOLL-lik 99.7 1.2E-17 4.2E-22 173.9 10.4 88 135-233 68-159 (549)
29 1jl5_A Outer protein YOPM; leu 99.7 6.4E-17 2.2E-21 163.8 14.7 254 170-460 149-426 (454)
30 3t6q_A CD180 antigen; protein- 99.7 6.7E-17 2.3E-21 170.4 14.7 40 422-461 420-460 (606)
31 1jl5_A Outer protein YOPM; leu 99.7 4.6E-16 1.6E-20 157.5 19.5 174 141-356 91-267 (454)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.1E-17 2.1E-21 169.1 13.1 295 135-461 70-508 (562)
33 1o6v_A Internalin A; bacterial 99.7 8.7E-17 3E-21 163.9 13.4 283 137-461 86-386 (466)
34 1xku_A Decorin; proteoglycan, 99.7 1E-15 3.4E-20 148.7 20.1 234 174-462 52-305 (330)
35 2z63_A TOLL-like receptor 4, v 99.7 6.8E-17 2.3E-21 169.0 12.5 102 380-492 420-531 (570)
36 3v47_A TOLL-like receptor 5B a 99.7 8.8E-16 3E-20 155.9 20.3 318 141-492 30-408 (455)
37 3j0a_A TOLL-like receptor 5; m 99.7 3.4E-16 1.2E-20 171.0 16.9 111 135-262 42-158 (844)
38 3zyi_A Leucine-rich repeat-con 99.7 1.3E-15 4.3E-20 154.7 18.7 216 174-438 75-301 (452)
39 3zyi_A Leucine-rich repeat-con 99.7 3.7E-15 1.3E-19 151.2 21.4 230 175-461 55-301 (452)
40 2z7x_B TOLL-like receptor 1, v 99.7 4.7E-16 1.6E-20 160.8 14.9 107 134-262 38-148 (520)
41 1xku_A Decorin; proteoglycan, 99.7 1.8E-15 6.1E-20 146.9 17.9 228 174-461 31-274 (330)
42 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-15 6.3E-20 158.1 18.9 231 141-440 61-297 (622)
43 3zyj_A Leucine-rich repeat-con 99.7 2.2E-15 7.4E-20 152.4 18.7 216 174-438 64-290 (440)
44 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-15 6.5E-20 165.2 19.6 146 140-306 23-171 (844)
45 3zyj_A Leucine-rich repeat-con 99.7 6.1E-15 2.1E-19 149.1 21.7 230 175-461 44-290 (440)
46 2z80_A TOLL-like receptor 2, v 99.7 2.5E-16 8.6E-21 154.5 11.1 41 420-461 270-312 (353)
47 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-15 4.7E-20 162.6 17.6 75 379-461 534-620 (680)
48 1ziw_A TOLL-like receptor 3; i 99.6 1.8E-15 6.2E-20 161.7 17.7 303 135-461 43-441 (680)
49 1ogq_A PGIP-2, polygalacturona 99.6 8.9E-17 3E-21 154.9 6.6 244 141-444 50-308 (313)
50 2ft3_A Biglycan; proteoglycan, 99.6 2.7E-15 9.2E-20 145.8 17.1 255 174-487 54-328 (332)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.5E-15 1.5E-19 154.9 18.4 125 141-294 52-181 (562)
52 3o53_A Protein LRIM1, AGAP0063 99.6 3.2E-16 1.1E-20 151.3 9.0 231 172-465 32-277 (317)
53 2ft3_A Biglycan; proteoglycan, 99.6 4.7E-15 1.6E-19 144.1 15.6 82 170-262 74-157 (332)
54 2z66_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 138.7 18.0 232 178-461 11-259 (306)
55 2z80_A TOLL-like receptor 2, v 99.6 1.4E-15 4.7E-20 149.2 10.4 245 141-442 52-316 (353)
56 3oja_A Leucine-rich immune mol 99.6 6.1E-16 2.1E-20 158.1 8.2 235 163-458 23-270 (487)
57 2z63_A TOLL-like receptor 4, v 99.6 9.5E-15 3.3E-19 152.7 17.4 238 168-461 276-529 (570)
58 4g8a_A TOLL-like receptor 4; l 99.6 1.6E-14 5.4E-19 152.9 17.6 116 132-267 67-187 (635)
59 2z66_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 138.7 15.6 216 174-439 28-260 (306)
60 1ozn_A Reticulon 4 receptor; N 99.6 7.2E-14 2.5E-18 132.6 18.7 146 177-356 14-163 (285)
61 2xwt_C Thyrotropin receptor; s 99.6 9.8E-14 3.4E-18 128.0 17.3 201 200-463 32-239 (239)
62 3o53_A Protein LRIM1, AGAP0063 99.6 1.9E-16 6.4E-21 152.9 -1.6 244 131-443 24-278 (317)
63 1ozn_A Reticulon 4 receptor; N 99.5 4.2E-13 1.4E-17 127.2 20.1 206 202-461 14-236 (285)
64 3oja_A Leucine-rich immune mol 99.5 4.7E-14 1.6E-18 144.2 12.8 224 181-463 14-250 (487)
65 3qfl_A MLA10; coiled-coil, (CC 99.5 1.6E-15 5.5E-20 121.4 0.9 46 1-46 37-84 (115)
66 2o6q_A Variable lymphocyte rec 99.5 1.1E-12 3.8E-17 123.3 20.2 196 175-438 17-216 (270)
67 4ay9_X Follicle-stimulating ho 99.5 7.5E-13 2.6E-17 129.4 19.2 211 174-435 30-254 (350)
68 2xwt_C Thyrotropin receptor; s 99.5 2.6E-13 9E-18 125.1 14.8 199 174-439 31-238 (239)
69 4ay9_X Follicle-stimulating ho 99.5 1.2E-12 4.1E-17 128.0 18.8 226 177-459 12-255 (350)
70 3rfs_A Internalin B, repeat mo 99.5 2.4E-13 8.1E-18 128.0 13.3 149 174-356 41-191 (272)
71 1wwl_A Monocyte differentiatio 99.5 1.4E-14 4.9E-19 139.4 3.2 206 198-461 94-307 (312)
72 4g8a_A TOLL-like receptor 4; l 99.4 1.4E-12 4.7E-17 137.9 17.7 127 141-292 52-183 (635)
73 1h6u_A Internalin H; cell adhe 99.4 8.2E-13 2.8E-17 126.7 12.7 58 171-232 60-117 (308)
74 1p9a_G Platelet glycoprotein I 99.4 3.9E-12 1.3E-16 120.8 17.0 195 172-438 8-206 (290)
75 1h6u_A Internalin H; cell adhe 99.4 7.8E-13 2.7E-17 126.9 12.1 186 174-445 41-234 (308)
76 1p9a_G Platelet glycoprotein I 99.4 1.3E-11 4.3E-16 117.2 19.7 194 197-461 8-206 (290)
77 2z62_A TOLL-like receptor 4, v 99.4 8E-12 2.7E-16 117.8 17.4 34 398-438 201-235 (276)
78 1wwl_A Monocyte differentiatio 99.4 9.5E-13 3.3E-17 126.5 10.9 194 173-407 94-306 (312)
79 3rfs_A Internalin B, repeat mo 99.4 2.2E-12 7.6E-17 121.4 12.8 179 197-441 39-219 (272)
80 2o6q_A Variable lymphocyte rec 99.4 1.2E-11 4E-16 116.3 17.7 150 174-356 37-191 (270)
81 2ast_B S-phase kinase-associat 99.4 2E-14 6.7E-19 139.8 -2.0 225 174-467 70-309 (336)
82 2z62_A TOLL-like receptor 4, v 99.4 3.9E-12 1.3E-16 119.9 13.7 186 174-407 28-234 (276)
83 4ezg_A Putative uncharacterize 99.3 6.6E-12 2.2E-16 112.0 11.2 148 174-357 44-192 (197)
84 3ogk_B Coronatine-insensitive 99.3 4.6E-14 1.6E-18 148.2 -4.2 300 137-461 160-524 (592)
85 4glp_A Monocyte differentiatio 99.3 9.9E-12 3.4E-16 119.3 10.9 193 174-407 91-304 (310)
86 4glp_A Monocyte differentiatio 99.3 2.2E-11 7.6E-16 116.8 12.9 206 198-461 90-305 (310)
87 3m19_A Variable lymphocyte rec 99.3 9.5E-11 3.3E-15 108.7 16.3 147 175-356 15-165 (251)
88 1z7x_W Ribonuclease inhibitor; 99.3 1.5E-14 5.2E-19 147.0 -11.3 147 137-293 24-181 (461)
89 2ast_B S-phase kinase-associat 99.2 1E-13 3.5E-18 134.7 -6.9 176 141-356 70-257 (336)
90 3cvr_A Invasion plasmid antige 99.2 1.2E-10 3.9E-15 120.4 15.4 184 175-441 60-244 (571)
91 2p1m_B Transport inhibitor res 99.2 2.5E-13 8.5E-18 142.6 -4.9 76 380-462 431-518 (594)
92 2p1m_B Transport inhibitor res 99.2 1.8E-13 6.1E-18 143.8 -7.0 36 426-462 455-493 (594)
93 3m19_A Variable lymphocyte rec 99.2 2.5E-10 8.6E-15 105.8 14.9 154 174-360 35-193 (251)
94 1h6t_A Internalin B; cell adhe 99.2 1.3E-10 4.6E-15 110.2 12.6 58 171-232 65-122 (291)
95 1h6t_A Internalin B; cell adhe 99.2 6.5E-11 2.2E-15 112.4 10.4 165 174-391 46-210 (291)
96 3ogk_B Coronatine-insensitive 99.2 5.1E-13 1.7E-17 140.2 -5.3 270 132-443 211-528 (592)
97 1m9s_A Internalin B; cell inva 99.2 1.8E-10 6.3E-15 120.1 13.2 172 138-360 40-211 (605)
98 1z7x_W Ribonuclease inhibitor; 99.2 2.3E-13 7.7E-18 138.3 -8.7 297 141-461 3-352 (461)
99 2ca6_A RAN GTPase-activating p 99.1 8.2E-13 2.8E-17 131.0 -6.3 104 323-438 186-314 (386)
100 1m9s_A Internalin B; cell inva 99.1 2.2E-10 7.5E-15 119.5 11.4 125 137-292 61-185 (605)
101 3cvr_A Invasion plasmid antige 99.1 1.5E-09 5.1E-14 112.1 16.8 175 199-462 59-242 (571)
102 4ezg_A Putative uncharacterize 99.1 2.9E-10 9.8E-15 101.3 10.0 142 281-461 43-192 (197)
103 3e6j_A Variable lymphocyte rec 99.1 1.5E-09 5.3E-14 99.0 13.1 145 176-356 21-169 (229)
104 2v9t_B SLIT homolog 2 protein 99.0 2.3E-09 7.8E-14 97.2 13.9 146 177-357 14-163 (220)
105 2o6s_A Variable lymphocyte rec 99.0 1.9E-09 6.6E-14 96.7 12.9 99 177-292 10-110 (208)
106 2v70_A SLIT-2, SLIT homolog 2 99.0 3.9E-09 1.3E-13 95.7 13.6 147 177-358 14-165 (220)
107 2o6s_A Variable lymphocyte rec 99.0 3.5E-09 1.2E-13 95.0 13.2 158 202-406 10-174 (208)
108 1xeu_A Internalin C; cellular 99.0 2.7E-09 9.4E-14 99.5 12.4 144 173-357 40-183 (263)
109 2ca6_A RAN GTPase-activating p 99.0 4.7E-11 1.6E-15 118.3 0.1 241 135-408 26-314 (386)
110 2xot_A Amphoterin-induced prot 99.0 3.5E-09 1.2E-13 103.7 12.7 74 178-262 22-98 (361)
111 1xeu_A Internalin C; cellular 99.0 4.9E-10 1.7E-14 104.6 6.2 142 174-356 19-160 (263)
112 2v9t_B SLIT homolog 2 protein 98.9 6.2E-09 2.1E-13 94.3 11.7 130 174-336 32-164 (220)
113 2ell_A Acidic leucine-rich nuc 98.9 3.3E-09 1.1E-13 91.6 7.6 56 174-232 24-81 (168)
114 3e6j_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 95.1 9.4 129 141-293 40-170 (229)
115 3goz_A Leucine-rich repeat-con 98.9 3.5E-11 1.2E-15 118.1 -5.9 44 394-438 250-295 (362)
116 2xot_A Amphoterin-induced prot 98.8 6.7E-09 2.3E-13 101.7 9.7 158 174-359 39-202 (361)
117 1dce_A Protein (RAB geranylger 98.8 3.9E-12 1.3E-16 131.9 -14.9 36 321-356 483-518 (567)
118 2v70_A SLIT-2, SLIT homolog 2 98.8 2.3E-08 8E-13 90.5 11.4 131 174-337 32-166 (220)
119 2ell_A Acidic leucine-rich nuc 98.7 8.7E-09 3E-13 89.0 5.7 138 139-301 22-164 (168)
120 1a9n_A U2A', U2A'; complex (nu 98.7 9.3E-09 3.2E-13 89.6 5.9 138 171-337 16-153 (176)
121 2wfh_A SLIT homolog 2 protein 98.7 6.3E-08 2.1E-12 85.6 11.3 80 174-262 31-112 (193)
122 1w8a_A SLIT protein; signaling 98.7 6E-08 2E-12 85.7 10.9 99 177-292 11-112 (192)
123 3goz_A Leucine-rich repeat-con 98.7 1.7E-10 5.7E-15 113.2 -6.3 243 135-408 16-295 (362)
124 2je0_A Acidic leucine-rich nuc 98.7 4.9E-09 1.7E-13 88.6 3.5 107 173-296 16-126 (149)
125 2wfh_A SLIT homolog 2 protein 98.7 8.3E-08 2.8E-12 84.9 10.7 103 141-262 31-136 (193)
126 4b8c_D Glucose-repressible alc 98.7 1.3E-08 4.5E-13 108.8 6.0 148 167-334 217-369 (727)
127 3sb4_A Hypothetical leucine ri 98.6 3.5E-07 1.2E-11 88.1 14.1 68 381-456 250-327 (329)
128 2o6r_A Variable lymphocyte rec 98.6 3.4E-07 1.2E-11 79.6 12.5 105 174-292 28-134 (177)
129 4b8c_D Glucose-repressible alc 98.6 1.2E-08 4E-13 109.2 2.3 33 198-231 223-256 (727)
130 2je0_A Acidic leucine-rich nuc 98.6 1.3E-08 4.4E-13 86.0 1.9 129 139-291 15-149 (149)
131 1w8a_A SLIT protein; signaling 98.6 3E-07 1E-11 81.2 10.5 105 174-293 29-137 (192)
132 2o6r_A Variable lymphocyte rec 98.5 3.8E-07 1.3E-11 79.2 10.7 105 141-262 28-134 (177)
133 1dce_A Protein (RAB geranylger 98.5 1.2E-07 4E-12 98.3 8.0 108 174-301 441-550 (567)
134 1a9n_A U2A', U2A'; complex (nu 98.5 9.9E-08 3.4E-12 83.0 5.5 128 197-356 17-150 (176)
135 2r9u_A Variable lymphocyte rec 98.5 8.3E-07 2.8E-11 76.9 10.7 115 176-309 14-130 (174)
136 3g39_A Variable lymphocyte rec 98.4 8.8E-07 3E-11 76.4 9.6 102 175-293 10-113 (170)
137 4fdw_A Leucine rich hypothetic 98.2 0.0001 3.6E-09 72.6 20.3 204 200-459 158-379 (401)
138 2ifg_A High affinity nerve gro 98.1 6.8E-06 2.3E-10 79.6 9.0 99 178-292 12-113 (347)
139 2r9u_A Variable lymphocyte rec 98.1 7.8E-06 2.7E-10 70.7 8.2 81 174-263 33-116 (174)
140 3g39_A Variable lymphocyte rec 98.1 8.5E-06 2.9E-10 70.1 8.3 80 174-262 30-112 (170)
141 3sb4_A Hypothetical leucine ri 98.1 2.6E-05 8.9E-10 74.9 12.6 89 323-433 225-327 (329)
142 1ds9_A Outer arm dynein; leuci 98.0 1.1E-07 3.8E-12 84.4 -6.0 55 174-231 70-124 (198)
143 1ds9_A Outer arm dynein; leuci 98.0 4.9E-08 1.7E-12 86.7 -8.4 106 170-293 44-151 (198)
144 3e4g_A ATP synthase subunit S, 98.0 1.7E-06 5.7E-11 74.2 1.4 64 394-465 82-154 (176)
145 2ra8_A Uncharacterized protein 97.9 1.2E-05 4.3E-10 77.9 7.0 187 140-356 106-317 (362)
146 2ifg_A High affinity nerve gro 97.9 3.9E-05 1.3E-09 74.2 10.5 105 203-337 12-116 (347)
147 4fdw_A Leucine rich hypothetic 97.9 0.00053 1.8E-08 67.5 18.6 116 319-460 221-355 (401)
148 3e4g_A ATP synthase subunit S, 97.9 3.8E-06 1.3E-10 72.0 2.5 89 200-296 62-153 (176)
149 2ra8_A Uncharacterized protein 97.8 6.5E-06 2.2E-10 79.9 2.0 173 137-336 135-319 (362)
150 4fs7_A Uncharacterized protein 97.4 0.0045 1.6E-07 60.7 16.4 69 381-458 297-374 (394)
151 3un9_A NLR family member X1; l 96.7 3.5E-05 1.2E-09 75.3 -6.0 142 140-292 71-221 (372)
152 4gt6_A Cell surface protein; l 96.6 0.19 6.4E-06 49.0 20.2 72 381-461 288-368 (394)
153 3un9_A NLR family member X1; l 96.6 3.7E-05 1.3E-09 75.1 -6.7 114 174-292 72-193 (372)
154 4h09_A Hypothetical leucine ri 95.9 0.23 8E-06 47.9 16.3 69 381-457 263-340 (379)
155 4fs7_A Uncharacterized protein 95.8 0.23 8E-06 48.3 16.0 55 197-260 160-216 (394)
156 1io0_A Tropomodulin; LRR prote 95.8 0.0011 3.8E-08 57.6 -1.0 78 125-209 20-103 (185)
157 3rw6_A Nuclear RNA export fact 95.1 0.0051 1.8E-07 56.5 1.0 16 28-43 32-47 (267)
158 3rw6_A Nuclear RNA export fact 94.1 0.024 8.1E-07 52.0 3.0 11 381-391 170-180 (267)
159 3rfe_A Platelet glycoprotein I 90.5 0.25 8.5E-06 39.7 4.2 50 178-232 12-65 (130)
160 1io0_A Tropomodulin; LRR prote 90.0 0.06 2.1E-06 46.4 0.1 69 134-209 58-133 (185)
161 4gt6_A Cell surface protein; l 88.5 1.4 4.8E-05 42.6 8.8 35 218-259 284-318 (394)
162 4h09_A Hypothetical leucine ri 81.9 4.3 0.00015 38.8 8.6 55 198-261 239-295 (379)
163 3rfe_A Platelet glycoprotein I 75.5 1.8 6E-05 34.5 3.0 37 173-210 30-66 (130)
164 4abx_A DNA repair protein RECN 57.5 30 0.001 28.9 7.1 61 12-101 82-142 (175)
165 1pgv_A TMD-1, tropomodulin TMD 56.1 6.3 0.00022 33.9 2.7 79 125-209 25-108 (197)
166 1pgv_A TMD-1, tropomodulin TMD 55.3 6.6 0.00022 33.8 2.7 40 323-362 40-86 (197)
167 3ro3_B Minsc, peptide of prote 40.2 18 0.00063 18.1 1.8 13 17-29 8-20 (22)
168 2lf6_A Effector protein hopab1 34.3 34 0.0012 24.8 3.1 35 6-40 10-44 (101)
169 3p8c_D Wiskott-aldrich syndrom 25.2 1.6E+02 0.0056 26.4 6.8 51 16-98 31-81 (279)
170 2lf3_A Effector protein hopab3 23.7 49 0.0017 24.2 2.4 34 7-40 22-55 (107)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.1e-22 Score=220.04 Aligned_cols=326 Identities=14% Similarity=0.077 Sum_probs=152.8
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhh-cCCCCCCCceEEEeecCCC-CCCccccCCCCC-CccEEeEeCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLD-ILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFS-KIEFLELENCNN 211 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~l~~c~~ 211 (498)
..+.++++|+.|+++.+.-. ..+.. .+..+++|++|+++++... .+|.++. .++ +|++|++++|..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~---------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFS---------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNF 380 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEE---------EECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEE
T ss_pred hHHhcCCCccEEECCCCccc---------CcCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCc
Confidence 45667888888888766410 00111 1344567777777776644 5555554 233 455555555433
Q ss_pred CC--------------------------CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCc
Q 048322 212 CV--------------------------SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPE 264 (498)
Q Consensus 212 ~~--------------------------~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (498)
.. .+|. ++.+++|++|++++|.-...+|..+. .+++|+.|++.++.
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~------~l~~L~~L~L~~n~- 453 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG------SLSKLRDLKLWLNM- 453 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG------GCTTCCEEECCSSC-
T ss_pred CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh------cCCCCCEEECCCCc-
Confidence 22 3333 44444444444444321112222221 25555555555442
Q ss_pred cccccccccCCccccCCCccceeeeccCCCccccCCCCcch---HHHH-HHhcccccccCC----CCccccEEEecCCCc
Q 048322 265 WWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPS---LEIL-VSKCEKLVVSLS----SYPRLCRLEVDECKE 336 (498)
Q Consensus 265 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~---L~~L-i~~~~~l~~~~~----~l~~L~~L~l~~~~~ 336 (498)
+.+..+. .+..+++|++|++++| .+.+.+|..+.. |+.| +.+|. +.+.+| .+++|++|++++|..
T Consensus 454 l~~~~p~-----~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 454 LEGEIPQ-----ELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCSCCCG-----GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCcCCH-----HHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcc
Confidence 2222111 1223677777777776 344466655443 3334 55543 222333 377888888888876
Q ss_pred ce-ec-CCCCCCCccEEEEeccEeeeecCC------CCc----cC---------------C-------------------
Q 048322 337 LV-CR-TPIDSKLIKFMTISNSSLDMIGCK------GML----YD---------------S------------------- 370 (498)
Q Consensus 337 ~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~------~l~----~~---------------~------------------- 370 (498)
.. ++ ....+++|+.|++++|.+...-.. .+. .. |
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 53 22 334478888888888865421000 000 00 0
Q ss_pred -----------CCCC-cCCC---CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCc--------------
Q 048322 371 -----------QAGS-SLPK---PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPW-------------- 413 (498)
Q Consensus 371 -----------~~l~-~lp~---~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l-------------- 413 (498)
..+. .+|. .+++|+.|++++| .++.++.|+.|+++++.--..+
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 0000 0111 1244555555555 1233444555555543211111
Q ss_pred ---ccc-CCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchhH----hhhccCCCCCCCCcCCCCeEE
Q 048322 414 ---RQG-RGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK----KVCKRDQGKEWPKIAHIPWVV 485 (498)
Q Consensus 414 ---~~l-~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~----~~~~~~~~~~~~~i~hi~~~~ 485 (498)
+.+ ..+|..+..+++|++|++++|+..+.+|..+.+.++....+.++|.|. ..|....+++|++|+|+++++
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 000 013566666666666666666555566665555566666666666442 268889999999999999875
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.5e-19 Score=191.33 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=144.4
Q ss_pred CCCceEEEeecCCCCCCc--cccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL--WIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
++|++|+++++....+|. +++ .+++|++|++++|...+.+|.++.+++|++|+++++ .+..+|..+.. +
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l 375 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCG------F 375 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS-EEEECCTTSEE------E
T ss_pred CCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC-ccccccHhhhh------h
Confidence 555555555555555555 454 355666666655433225555555566666666553 34455544332 5
Q ss_pred CC-CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcc----------hHHHH-HHhccccccc
Q 048322 252 PS-LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLP----------SLEIL-VSKCEKLVVS 319 (498)
Q Consensus 252 ~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~----------~L~~L-i~~~~~l~~~ 319 (498)
++ |++|+++++. ++.++.. ... ..+++|+.|++++| .+.+.+|..++ +|+.| +.++.- . .
T Consensus 376 ~~~L~~L~Ls~N~-l~~lp~~-~~~---~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~-~ 447 (636)
T 4eco_A 376 TEQVENLSFAHNK-LKYIPNI-FDA---KSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S-K 447 (636)
T ss_dssp CTTCCEEECCSSC-CSSCCSC-CCT---TCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C-S
T ss_pred cccCcEEEccCCc-Ccccchh-hhh---cccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCcc-C-c
Confidence 55 6666666552 3322211 110 11346666666666 33334554333 34444 443321 1 2
Q ss_pred CCC-----CccccEEEecCCCcceecCCCC--C-------CCccEEEEeccEeeeecCCCCccCCCCCCcCCC-----CC
Q 048322 320 LSS-----YPRLCRLEVDECKELVCRTPID--S-------KLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK-----PM 380 (498)
Q Consensus 320 ~~~-----l~~L~~L~l~~~~~~~~~~~~~--~-------~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~-----~l 380 (498)
+|. +++|++|++++|....++.... . ++|+.|++++| .+..+|. .+
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N---------------~l~~lp~~~~~~~l 512 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN---------------KLTKLSDDFRATTL 512 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS---------------CCCBCCGGGSTTTC
T ss_pred CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC---------------cCCccChhhhhccC
Confidence 332 5566666666665544332211 1 15666666655 3444543 45
Q ss_pred CCCCeEEecCCCC-------CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCcccccc
Q 048322 381 TTTNVLEFGKLLE-------PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLL 453 (498)
Q Consensus 381 ~~L~~L~i~~~~~-------~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~ 453 (498)
++|+.|++++|.+ ..+++|+.|+++++..+..-.-...+|.++..+++|++|++++| .++.+|.. +.++|+
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~ 590 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNIS 590 (636)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCC
T ss_pred CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCC
Confidence 7899999999933 34567999999765422110001234888999999999999997 55999875 448999
Q ss_pred ceeeccCch
Q 048322 454 DLYVNNCPR 462 (498)
Q Consensus 454 ~L~i~~c~~ 462 (498)
.|++++|+-
T Consensus 591 ~L~Ls~N~l 599 (636)
T 4eco_A 591 VLDIKDNPN 599 (636)
T ss_dssp EEECCSCTT
T ss_pred EEECcCCCC
Confidence 999999963
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.2e-19 Score=177.78 Aligned_cols=273 Identities=15% Similarity=0.126 Sum_probs=142.3
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP 216 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp 216 (498)
+..+++|++|+++.+.- .. + ..+..+++|++|+++++....+|. +. .+++|++|++++| .+..+|
T Consensus 62 ~~~~~~L~~L~l~~n~i-~~---------~-~~~~~l~~L~~L~L~~n~i~~~~~-~~--~l~~L~~L~l~~n-~i~~~~ 126 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQI-TD---------I-SPLSNLVKLTNLYIGTNKITDISA-LQ--NLTNLRELYLNED-NISDIS 126 (347)
T ss_dssp GGGCTTCCEEECCSSCC-CC---------C-GGGTTCTTCCEEECCSSCCCCCGG-GT--TCTTCSEEECTTS-CCCCCG
T ss_pred hhhcCCccEEEccCCcc-cc---------c-hhhhcCCcCCEEEccCCcccCchH-Hc--CCCcCCEEECcCC-cccCch
Confidence 45567777777766531 10 0 114455777777777776666543 33 4677777777765 455666
Q ss_pred CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
+++.+++|++|++++|..+..++. + ..+++|++|++.++. +..... +..+++|++|++++| .+.
T Consensus 127 ~~~~l~~L~~L~l~~n~~~~~~~~-~------~~l~~L~~L~l~~~~-~~~~~~-------~~~l~~L~~L~l~~n-~l~ 190 (347)
T 4fmz_A 127 PLANLTKMYSLNLGANHNLSDLSP-L------SNMTGLNYLTVTESK-VKDVTP-------IANLTDLYSLSLNYN-QIE 190 (347)
T ss_dssp GGTTCTTCCEEECTTCTTCCCCGG-G------TTCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEECTTS-CCC
T ss_pred hhccCCceeEEECCCCCCcccccc-h------hhCCCCcEEEecCCC-cCCchh-------hccCCCCCEEEccCC-ccc
Confidence 677777777777777655554433 1 246777777776652 222221 222677777777776 332
Q ss_pred ccCCC--CcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCC
Q 048322 297 GKLPE--LLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQA 372 (498)
Q Consensus 297 ~~lp~--~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 372 (498)
.++. .+++|+.| +.++.-.. ..+..+++|++|++++|.....+....+++|++|++++|.+..
T Consensus 191 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------------ 257 (347)
T 4fmz_A 191 -DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD------------ 257 (347)
T ss_dssp -CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------------
T ss_pred -ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC------------
Confidence 3332 12222222 33221110 0122355666666666655444444445666666665542211
Q ss_pred CCcCCCCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC
Q 048322 373 GSSLPKPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV 446 (498)
Q Consensus 373 l~~lp~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~ 446 (498)
+..+ ..+++|+.|++++| .+..+++|+.|++++|. ++.. .|..+..+++|++|++++|+ ++.++..
T Consensus 258 ~~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~~ 329 (347)
T 4fmz_A 258 INAV-KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNE-----DMEVIGGLTNLTTLFLSQNH-ITDIRPL 329 (347)
T ss_dssp CGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGG-----GHHHHHTCTTCSEEECCSSS-CCCCGGG
T ss_pred ChhH-hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCc-----ChhHhhccccCCEEEccCCc-cccccCh
Confidence 0001 23356666666666 12344556666666653 2211 13445566666666666654 4444333
Q ss_pred CccccccceeeccCc
Q 048322 447 GLPSSLLDLYVNNCP 461 (498)
Q Consensus 447 ~~~~sL~~L~i~~c~ 461 (498)
...++|++|++++|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 334566666666654
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=4.8e-19 Score=191.37 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=145.5
Q ss_pred CCCCceEEEeecCCCCCCc--cccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322 173 HKCIKKVAIRNYGGARFPL--WIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++|++|+++++....+|. ++. .+++|+.|++++|. +..+|.++.+++|+.|+++++. +..+|..+..
T Consensus 547 l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~------ 616 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCA------ 616 (876)
T ss_dssp TTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTSCE------
T ss_pred cCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHHhh------
Confidence 3466666666666666665 555 46666666666643 3366666666666666666643 4455544332
Q ss_pred CCC-CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCC--------cchHHHH-HHhcccccccC
Q 048322 251 FPS-LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPEL--------LPSLEIL-VSKCEKLVVSL 320 (498)
Q Consensus 251 ~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~--------l~~L~~L-i~~~~~l~~~~ 320 (498)
+++ |+.|+++++. +..++ ..... ...++|+.|++++| .+.+.+|.. .++|+.| +..|.- . .+
T Consensus 617 l~~~L~~L~Ls~N~-L~~lp-~~~~~---~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~-~l 688 (876)
T 4ecn_A 617 FTDQVEGLGFSHNK-LKYIP-NIFNA---KSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEI-Q-KF 688 (876)
T ss_dssp ECTTCCEEECCSSC-CCSCC-SCCCT---TCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-C-SC
T ss_pred ccccCCEEECcCCC-CCcCc-hhhhc---cccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcC-C-cc
Confidence 555 6666666552 33322 11111 01234666666665 233333321 1234444 443322 1 23
Q ss_pred CC-----CccccEEEecCCCcceecCCCC---------CCCccEEEEeccEeeeecCCCCccCCCCCCcCCC-----CCC
Q 048322 321 SS-----YPRLCRLEVDECKELVCRTPID---------SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK-----PMT 381 (498)
Q Consensus 321 ~~-----l~~L~~L~l~~~~~~~~~~~~~---------~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~-----~l~ 381 (498)
|. +++|+.|++++|....++.... +++|+.|++++| .+..+|. .++
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N---------------~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN---------------KLTSLSDDFRATTLP 753 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS---------------CCCCCCGGGSTTTCT
T ss_pred CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC---------------CCccchHHhhhccCC
Confidence 32 4566666666665444332111 115666666655 3334442 458
Q ss_pred CCCeEEecCCC-------CCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccc
Q 048322 382 TTNVLEFGKLL-------EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLD 454 (498)
Q Consensus 382 ~L~~L~i~~~~-------~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~ 454 (498)
+|+.|++++|. +..+++|+.|++++++.+..-.-...+|.++..+++|++|++++| .++.+|.. +.++|+.
T Consensus 754 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~ 831 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYI 831 (876)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCE
T ss_pred CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCE
Confidence 89999999983 335567999999875432210101234888999999999999997 45999986 4579999
Q ss_pred eeeccCch
Q 048322 455 LYVNNCPR 462 (498)
Q Consensus 455 L~i~~c~~ 462 (498)
|++++|+-
T Consensus 832 LdLs~N~l 839 (876)
T 4ecn_A 832 LDIADNPN 839 (876)
T ss_dssp EECCSCTT
T ss_pred EECCCCCC
Confidence 99999973
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=7.3e-19 Score=175.07 Aligned_cols=276 Identities=17% Similarity=0.107 Sum_probs=165.6
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCC
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVS 214 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~ 214 (498)
.+.++++|+.|+++.+.-. ......+..+++|++|+++++....+|. .+. .+++|++|++++| .++.
T Consensus 64 ~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~ 131 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIE---------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERN-DLSS 131 (390)
T ss_dssp HHHHCCCCSEEECTTSCCC---------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCCC
T ss_pred HhcccccCcEEECCCCccc---------ccChhhccCCCCcCEEECCCCCCCcCCHHHhc--CCCCCCEEECCCC-ccCc
Confidence 3455667777777554310 0011234455677777777776655543 344 4677777777765 4556
Q ss_pred CCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 215 LPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 215 lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
+|. ++.+++|++|+++++ .+..++...++ .+++|++|+++++ .++.+. +..+++|+.|+++++
T Consensus 132 l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l~~~~--------~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ-----ATTSLQNLQLSSN-RLTHVD--------LSLIPSLFHANVSYN 196 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCBCCTTTTS-----SCTTCCEEECCSS-CCSBCC--------GGGCTTCSEEECCSS
T ss_pred CCHHHhcCCCCCcEEECCCC-ccCccChhhcc-----CCCCCCEEECCCC-cCCccc--------cccccccceeecccc
Confidence 665 466777777777764 35555443222 4667777777655 233221 112666777776665
Q ss_pred CCccccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCC
Q 048322 293 PKLSGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQ 371 (498)
Q Consensus 293 ~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 371 (498)
.+. .++. .++|+.| +.++.--....+..++|+.|++++|.....+....+++|+.|++++|.+......
T Consensus 197 -~l~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~------- 266 (390)
T 3o6n_A 197 -LLS-TLAI-PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH------- 266 (390)
T ss_dssp -CCS-EEEC-CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG-------
T ss_pred -ccc-ccCC-CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh-------
Confidence 232 2211 2344444 4443321111122567777777777666555555677888888877633321100
Q ss_pred CCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCC
Q 048322 372 AGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFP 444 (498)
Q Consensus 372 ~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp 444 (498)
.+ ..+++|+.|++++| ....+|+|+.|++++| .++.+ |..+..+++|++|++++| .++.+|
T Consensus 267 ---~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~N-~i~~~~ 334 (390)
T 3o6n_A 267 ---PF-VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHN-SIVTLK 334 (390)
T ss_dssp ---GG-TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred ---Hc-cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceec------CccccccCcCCEEECCCC-ccceeC
Confidence 00 23478999999998 3456888999999986 45433 777788999999999996 577776
Q ss_pred CCCccccccceeeccCc
Q 048322 445 EVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 445 ~~~~~~sL~~L~i~~c~ 461 (498)
. ...++|+.|++++++
T Consensus 335 ~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 L-STHHTLKNLTLSHND 350 (390)
T ss_dssp C-CTTCCCSEEECCSSC
T ss_pred c-hhhccCCEEEcCCCC
Confidence 4 345789999999876
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=5e-18 Score=173.72 Aligned_cols=252 Identities=17% Similarity=0.183 Sum_probs=140.1
Q ss_pred CCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCC
Q 048322 171 QPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGF 247 (498)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 247 (498)
..+++|++|+++++....+ |..+. .+++|++|+|++| .+..+|. ++.+++|++|+++++. +..++...+.
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~--- 125 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQ--- 125 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTT---
T ss_pred cCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHcc---
Confidence 3445555555555544433 33333 3555555555553 3444443 4555555555555532 3333322221
Q ss_pred CCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCC----CcchHHHH-HHhcccc---ccc
Q 048322 248 SMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPE----LLPSLEIL-VSKCEKL---VVS 319 (498)
Q Consensus 248 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~----~l~~L~~L-i~~~~~l---~~~ 319 (498)
.+++|+.|+++++ .+..+.+.... .+++|++|++++| .++ .+|. .+++|+.| +.++.-- ...
T Consensus 126 --~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 195 (477)
T 2id5_A 126 --DLYNLKSLEVGDN-DLVYISHRAFS-----GLNSLEQLTLEKC-NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYS 195 (477)
T ss_dssp --TCTTCCEEEECCT-TCCEECTTSST-----TCTTCCEEEEESC-CCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred --ccccCCEEECCCC-ccceeChhhcc-----CCCCCCEEECCCC-cCc-ccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence 3555555555543 22222211111 1555555555555 232 2221 12223333 3222110 013
Q ss_pred CCCCccccEEEecCCCccee--cCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC----CCCCCCCeEEecCC--
Q 048322 320 LSSYPRLCRLEVDECKELVC--RTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP----KPMTTTNVLEFGKL-- 391 (498)
Q Consensus 320 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp----~~l~~L~~L~i~~~-- 391 (498)
+..+++|++|++++|..... +......+|+.|++++| .+..+| ..+++|+.|++++|
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC---------------NLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS---------------CCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCC---------------cccccCHHHhcCccccCeeECCCCcC
Confidence 45578888888888765542 22333558888888876 344444 34578999999988
Q ss_pred ------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 392 ------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 392 ------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
.+..+++|+.|+++++. ++.+ .|..+..+++|++|++++| .++.+|.. ...++|+.|+++++|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQ-LAVV-----EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSC-CSEE-----CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CccChhhccccccCCEEECCCCc-cceE-----CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 35667889999998853 4332 1667888899999999986 77777764 234789999988765
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=3.2e-18 Score=166.02 Aligned_cols=126 Identities=19% Similarity=0.268 Sum_probs=85.0
Q ss_pred CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC-CCCCCCccEEEEeccEee
Q 048322 281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT-PIDSKLIKFMTISNSSLD 359 (498)
Q Consensus 281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~ 359 (498)
+++|++|++++| .++ .+|. .+..+++|++|++++|....++. ...+++|+.|++++|
T Consensus 182 l~~L~~L~L~~n-~l~-~lp~-----------------~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n--- 239 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIR-SLPA-----------------SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--- 239 (328)
T ss_dssp STTCCEEEEEEE-CCC-CCCG-----------------GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC---
T ss_pred CCCCCEEECcCC-CcC-cchH-----------------hhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC---
Confidence 778888888877 454 5554 34456778888888776555332 233566666666543
Q ss_pred eecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322 360 MIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN 439 (498)
Q Consensus 360 ~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~ 439 (498)
.....+|. .++.+++|+.|++++|+.+..+ |..+..+++|++|++++|+.
T Consensus 240 -----------~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 240 -----------TALRNYPP-------------IFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp -----------TTCCBCCC-------------CTTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEECTTCTT
T ss_pred -----------cchhhhHH-------------HhcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEeCCCCCc
Confidence 11222222 2356777888888888776543 88888999999999999999
Q ss_pred CCcCCCC-Cccccccceeec
Q 048322 440 LTLFPEV-GLPSSLLDLYVN 458 (498)
Q Consensus 440 l~~lp~~-~~~~sL~~L~i~ 458 (498)
++.+|.. +.+++|+.+.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECC
T ss_pred hhhccHHHhhccCceEEeCC
Confidence 9999875 444666666665
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=7.1e-19 Score=184.92 Aligned_cols=277 Identities=18% Similarity=0.121 Sum_probs=180.2
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCV 213 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~ 213 (498)
..+.++++|+.|+|+.+.-. ......+..+++|++|+++++....+|.. ++ .+++|++|+|++| .+.
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~ 136 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIE---------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERN-DLS 136 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCC---------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCC
T ss_pred HHHccCCCCcEEECCCCCCC---------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHc--CCCCCCEEEeeCC-CCC
Confidence 34556778888888665410 00122445567888888888877666543 34 5788888888876 566
Q ss_pred CCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeecc
Q 048322 214 SLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK 291 (498)
Q Consensus 214 ~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (498)
.+|+ ++.+++|++|++++| .+..++...++ .+++|++|+++++ .+..+. +..+++|+.|++++
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~--------~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ-----ATTSLQNLQLSSN-RLTHVD--------LSLIPSLFHANVSY 201 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT-----TCTTCCEEECTTS-CCSBCC--------GGGCTTCSEEECCS
T ss_pred CCCHHHhccCCCCCEEEeeCC-cCCCCChhhhh-----cCCcCcEEECcCC-CCCCcC--------hhhhhhhhhhhccc
Confidence 6765 577888888888875 45555554332 4778888888766 333332 12277778887777
Q ss_pred CCCccccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCC
Q 048322 292 CPKLSGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDS 370 (498)
Q Consensus 292 c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 370 (498)
| .+. .++ ..++|+.| +.++.--....+..++|+.|++++|.....+....+++|+.|++++|.+......
T Consensus 202 n-~l~-~l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~------ 272 (597)
T 3oja_B 202 N-LLS-TLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH------ 272 (597)
T ss_dssp S-CCS-EEE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG------
T ss_pred C-ccc-ccc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHH------
Confidence 6 332 222 12345555 5444321111112467888888888766665566688888888887744322110
Q ss_pred CCCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC
Q 048322 371 QAGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF 443 (498)
Q Consensus 371 ~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l 443 (498)
.+ ..+++|+.|++++| ....+|+|+.|++++|. ++. +|.++..+++|++|++++| .+..+
T Consensus 273 ----~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~------i~~~~~~l~~L~~L~L~~N-~l~~~ 339 (597)
T 3oja_B 273 ----PF-VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLH------VERNQPQFDRLENLYLDHN-SIVTL 339 (597)
T ss_dssp ----GG-TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCC------CGGGHHHHTTCSEEECCSS-CCCCC
T ss_pred ----Hh-cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCc------cCcccccCCCCCEEECCCC-CCCCc
Confidence 01 24488999999998 34568899999999864 443 3888888999999999996 56777
Q ss_pred CCCCccccccceeeccCc
Q 048322 444 PEVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 444 p~~~~~~sL~~L~i~~c~ 461 (498)
|.. ..++|+.|+++++|
T Consensus 340 ~~~-~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 340 KLS-THHTLKNLTLSHND 356 (597)
T ss_dssp CCC-TTCCCSEEECCSSC
T ss_pred Chh-hcCCCCEEEeeCCC
Confidence 643 45799999999876
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.1e-18 Score=181.33 Aligned_cols=296 Identities=16% Similarity=0.129 Sum_probs=204.8
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
...+++.|++..+.- ......++ ..+++|++|+++++....+|. .+. .+++|++|+|++|. +..+|+
T Consensus 49 ~l~~l~~l~l~~~~l------~~lp~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM------RKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNA-IRYLPP 116 (597)
T ss_dssp GGCCCSEEEESSCEE------SEECTHHH---HHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred cCCCceEEEeeCCCC------CCcCHHHH---ccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCc-CCCCCH
Confidence 356788888865531 11111122 235899999999998777664 555 68999999999974 666665
Q ss_pred --CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322 218 --LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 218 --i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
++.+++|++|++++| .+..+|..+++ .+++|++|+++++ .+....+...+. +++|++|++++| .+
T Consensus 117 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l 183 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERN-DLSSLPRGIFH-----NTPKLTTLSMSNN-NLERIEDDTFQA-----TTSLQNLQLSSN-RL 183 (597)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCCBCCTTTTTT-----CTTCCEEECTTS-CC
T ss_pred HHHcCCCCCCEEEeeCC-CCCCCCHHHhc-----cCCCCCEEEeeCC-cCCCCChhhhhc-----CCcCcEEECcCC-CC
Confidence 799999999999996 58888876654 5899999999987 455554433333 899999999998 45
Q ss_pred cccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCC
Q 048322 296 SGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGS 374 (498)
Q Consensus 296 ~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~ 374 (498)
++.-+..+++|+.| +.++. +. .++..++|+.|++++|....++... +++|+.|++++|.+... .
T Consensus 184 ~~~~~~~l~~L~~L~l~~n~-l~-~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~------------~ 248 (597)
T 3oja_B 184 THVDLSLIPSLFHANVSYNL-LS-TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDT------------A 248 (597)
T ss_dssp SBCCGGGCTTCSEEECCSSC-CS-EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCC------------G
T ss_pred CCcChhhhhhhhhhhcccCc-cc-cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCC------------h
Confidence 42222445666666 55442 22 3444678889999888776655433 47899999988743221 0
Q ss_pred cCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC
Q 048322 375 SLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV 446 (498)
Q Consensus 375 ~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~ 446 (498)
.+ ..+++|+.|++++| .++.+++|+.|+++++ .++.+ |..+..+++|++|++++| .+..+|..
T Consensus 249 ~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 319 (597)
T 3oja_B 249 WL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL------NLYGQPIPTLKVLDLSHN-HLLHVERN 319 (597)
T ss_dssp GG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEE------ECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred hh-ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCC------CcccccCCCCcEEECCCC-CCCccCcc
Confidence 11 34488999999999 3567888999999985 45443 777788999999999997 66678764
Q ss_pred -CccccccceeeccCchhHhhhccCCCCCCCCcCCCCeEEECceEe
Q 048322 447 -GLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFI 491 (498)
Q Consensus 447 -~~~~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~hi~~~~~~~~~~ 491 (498)
+.+++|+.|++++|+--. .+......+..+.+.+..+
T Consensus 320 ~~~l~~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSCE
T ss_pred cccCCCCCEEECCCCCCCC--------cChhhcCCCCEEEeeCCCC
Confidence 345899999999986311 1223344566666665444
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=8.1e-19 Score=189.89 Aligned_cols=297 Identities=18% Similarity=0.119 Sum_probs=169.1
Q ss_pred cccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322 138 CEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLP 216 (498)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp 216 (498)
..+.+|++|+++++.-.. .+..+..+++|++|+++++... .+|.++. .+++|++|++++|.....+|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFST----------GIPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp TTCTTCCEEECCSSCCCS----------CCCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCC
T ss_pred ccCCcCCEEECcCCcCCC----------CCcccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccC
Confidence 467888888888775211 1122556678888888877755 3456665 57777777777765444444
Q ss_pred CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC--------------------c
Q 048322 217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN--------------------V 276 (498)
Q Consensus 217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--------------------~ 276 (498)
.. .+++|++|++++|.-...+|..+++ .+++|++|+++++ .+.+..+...+. .
T Consensus 265 ~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 265 PL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred cc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 44 6666777777665433345544332 2355555555444 111111110000 0
Q ss_pred cccCCCccceeeeccCCCccccCCCCcchH----HHH-HHhcccccccCC----C--CccccEEEecCCCcce-ec-CCC
Q 048322 277 HVDIFPRLQELSVVKCPKLSGKLPELLPSL----EIL-VSKCEKLVVSLS----S--YPRLCRLEVDECKELV-CR-TPI 343 (498)
Q Consensus 277 ~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L----~~L-i~~~~~l~~~~~----~--l~~L~~L~l~~~~~~~-~~-~~~ 343 (498)
.+..+++|++|++++| .+.+.+|..+..+ +.| +.+|.-. +.++ . +++|++|++++|.... ++ ...
T Consensus 338 ~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEE-EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcC-CCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 1222566666666666 3334566554333 333 4443321 1111 1 4567777777776543 22 233
Q ss_pred CCCCccEEEEeccEeee------ecCCCCc----cCCCCCCcCCCC---CCCCCeEEecCC--------CCCCCCCccEE
Q 048322 344 DSKLIKFMTISNSSLDM------IGCKGML----YDSQAGSSLPKP---MTTTNVLEFGKL--------LEPGFQILETL 402 (498)
Q Consensus 344 ~~~~L~~L~l~~~~l~~------~~~~~l~----~~~~~l~~lp~~---l~~L~~L~i~~~--------~~~~lp~L~~L 402 (498)
.+++|+.|++++|.+.. ..++.+. ..|.-...+|.. +++|+.|++++| .++.+++|+.|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 46777777777775542 2223332 222221234443 377888888887 23456678888
Q ss_pred EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~ 461 (498)
++++|.-... +|.++..+++|++|++++|.....+|.. +..++|+.|++++|+
T Consensus 496 ~L~~N~l~~~------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNNRLTGE------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EccCCccCCc------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 8887653322 3888888999999999988665677764 445789999998875
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=9.8e-19 Score=171.25 Aligned_cols=268 Identities=15% Similarity=0.141 Sum_probs=191.0
Q ss_pred cccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 138 CEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
..+++|+.|++..+.-.. ++.+..+++|++|+++++....+|. +. .+++|++|++++| .+..+|.
T Consensus 41 ~~l~~L~~L~l~~~~i~~-----------~~~~~~~~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~L~~n-~i~~~~~ 105 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-----------IQGIEYLTNLEYLNLNGNQITDISP-LS--NLVKLTNLYIGTN-KITDISA 105 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCCGG
T ss_pred hhcccccEEEEeCCcccc-----------chhhhhcCCccEEEccCCccccchh-hh--cCCcCCEEEccCC-cccCchH
Confidence 356889999997664210 1234557999999999999888877 55 6899999999997 6777888
Q ss_pred CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG 297 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 297 (498)
++.+++|++|+++++ .+..++. + ..+++|+.|+++++.....+.. +..+++|++|++++|. +.
T Consensus 106 ~~~l~~L~~L~l~~n-~i~~~~~-~------~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~-~~- 168 (347)
T 4fmz_A 106 LQNLTNLRELYLNED-NISDISP-L------ANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESK-VK- 168 (347)
T ss_dssp GTTCTTCSEEECTTS-CCCCCGG-G------TTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSC-CC-
T ss_pred HcCCCcCCEEECcCC-cccCchh-h------ccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCC-cC-
Confidence 999999999999986 4666654 2 3599999999998866554432 2338999999999984 33
Q ss_pred cCCC--CcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322 298 KLPE--LLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG 373 (498)
Q Consensus 298 ~lp~--~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l 373 (498)
.++. .+++|+.| +.+|.--. ..+..+++|+.|++++|..........+++|++|++++|.+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l--------------- 233 (347)
T 4fmz_A 169 DVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI--------------- 233 (347)
T ss_dssp CCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---------------
T ss_pred CchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc---------------
Confidence 3332 34556666 66654211 02344788888888888766655555678888888887632
Q ss_pred CcCC--CCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCC-
Q 048322 374 SSLP--KPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFP- 444 (498)
Q Consensus 374 ~~lp--~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp- 444 (498)
..++ ..+++|+.|++++| ....+++|+.|++++| .++.+ ..+..+++|++|++++|. +...+
T Consensus 234 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred CCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEEECcCCc-CCCcCh
Confidence 2222 34588999999998 3456778999999886 45432 346788999999999984 44433
Q ss_pred CC-CccccccceeeccCc
Q 048322 445 EV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 445 ~~-~~~~sL~~L~i~~c~ 461 (498)
.. ...++|++|++++|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHHTCTTCSEEECCSSS
T ss_pred hHhhccccCCEEEccCCc
Confidence 21 234789999999986
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=2.9e-18 Score=185.29 Aligned_cols=300 Identities=12% Similarity=0.083 Sum_probs=200.2
Q ss_pred HhhcccCCcccEEEEecCCCCC--------CcChhhHHHhhhcCC--CCCCCceEEEeecC-CCCCCccccCCCCCCccE
Q 048322 135 AALCEKLNLHALTLEWGSQFDN--------SRDVAVEEHVLDILQ--PHKCIKKVAIRNYG-GARFPLWIGDPLFSKIEF 203 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~--------~~~~~~~~~~l~~l~--~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~ 203 (498)
..+.++++|+.|+|+.+.-... .........+++.+. .+++|++|++++|. ...+|.+++ .+++|++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~ 519 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQS 519 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCE
Confidence 4588899999999998862110 001122334777777 88999999999987 567898888 6999999
Q ss_pred EeEeCCCCCC--CCCC-CCCc-------cccceeeccccccceecCc--cccCCCCCCCCCCCceeeccCCCcccccccc
Q 048322 204 LELENCNNCV--SLPS-LGLL-------SSLKHLAVKGLKKLKSIES--EVYGEGFSMPFPSLKILRFENLPEWWHWDTD 271 (498)
Q Consensus 204 L~l~~c~~~~--~lp~-i~~l-------~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 271 (498)
|+|++|..+. .+|. ++.+ ++|++|+++++ .+..+|. .+. .+++|+.|+++++ .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~------~L~~L~~L~Ls~N-~l~~lp-- 589 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQ------KMVKLGLLDCVHN-KVRHLE-- 589 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHT------TCTTCCEEECTTS-CCCBCC--
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhh------cCCCCCEEECCCC-Ccccch--
Confidence 9999986355 4774 5544 49999999986 4668876 444 4889999999877 344332
Q ss_pred ccCCccccCCCccceeeeccCCCccccCCCCcc---h-HHHH-HHhcccccccCCC----C--ccccEEEecCCCccee-
Q 048322 272 IKGNVHVDIFPRLQELSVVKCPKLSGKLPELLP---S-LEIL-VSKCEKLVVSLSS----Y--PRLCRLEVDECKELVC- 339 (498)
Q Consensus 272 ~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~---~-L~~L-i~~~~~l~~~~~~----l--~~L~~L~l~~~~~~~~- 339 (498)
. +..+++|+.|++++| .+. .+|..+. + |+.| +..|. +. .+|. + ++|+.|++++|.....
T Consensus 590 ~-----~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 590 A-----FGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp C-----CCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred h-----hcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 1 223788888888887 454 7776554 3 5555 65554 22 3443 2 3488888888765432
Q ss_pred cCC------CCCCCccEEEEeccEeeee------cCCCCc---cCCCCCCcCCCCC-----------CCCCeEEecCC--
Q 048322 340 RTP------IDSKLIKFMTISNSSLDMI------GCKGML---YDSQAGSSLPKPM-----------TTTNVLEFGKL-- 391 (498)
Q Consensus 340 ~~~------~~~~~L~~L~l~~~~l~~~------~~~~l~---~~~~~l~~lp~~l-----------~~L~~L~i~~~-- 391 (498)
+.. ...++|+.|++++|.+... .++.|. ...+.+..+|..+ ++|+.|++++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC
Confidence 111 1245788888887744311 233333 2333555666543 17889999888
Q ss_pred -----CCC--CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec------CCCCCcCCCC-Cccccccceee
Q 048322 392 -----LEP--GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN------CPNLTLFPEV-GLPSSLLDLYV 457 (498)
Q Consensus 392 -----~~~--~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~------c~~l~~lp~~-~~~~sL~~L~i 457 (498)
.+. .+++|+.|+++++ .++. +|..+..+++|+.|++++ |.....+|.. ..+++|+.|++
T Consensus 741 ~~lp~~l~~~~l~~L~~L~Ls~N-~L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 741 TSLSDDFRATTLPYLSNMDVSYN-CFSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCCCGGGSTTTCTTCCEEECCSS-CCSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred ccchHHhhhccCCCcCEEEeCCC-CCCc------cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 222 6778999999885 3443 388888899999999976 4345566654 44578999999
Q ss_pred ccCch
Q 048322 458 NNCPR 462 (498)
Q Consensus 458 ~~c~~ 462 (498)
++|.-
T Consensus 814 s~N~L 818 (876)
T 4ecn_A 814 GSNDI 818 (876)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98863
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=5.1e-18 Score=163.57 Aligned_cols=240 Identities=16% Similarity=0.138 Sum_probs=128.6
Q ss_pred CCceEEEeecCCC---CCCccccCCCCCCccEEeEeC-CCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322 175 CIKKVAIRNYGGA---RFPLWIGDPLFSKIEFLELEN-CNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 175 ~L~~L~l~~~~~~---~~p~~~~~~~l~~L~~L~l~~-c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
+++.|+++++... .+|..+. .+++|++|++++ +.....+|. ++.+++|++|+++++.-...+|..+.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------ 122 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------ 122 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG------
T ss_pred eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh------
Confidence 4455555554443 2444444 355555555553 322334443 55555555555555432223333332
Q ss_pred CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCc-cccE
Q 048322 250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYP-RLCR 328 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~-~L~~ 328 (498)
.+++|++|+++++ .+.+..+... ..+++|++|++++| .+++.+|. .+..++ +|++
T Consensus 123 ~l~~L~~L~Ls~N-~l~~~~p~~~-----~~l~~L~~L~L~~N-~l~~~~p~-----------------~l~~l~~~L~~ 178 (313)
T 1ogq_A 123 QIKTLVTLDFSYN-ALSGTLPPSI-----SSLPNLVGITFDGN-RISGAIPD-----------------SYGSFSKLFTS 178 (313)
T ss_dssp GCTTCCEEECCSS-EEESCCCGGG-----GGCTTCCEEECCSS-CCEEECCG-----------------GGGCCCTTCCE
T ss_pred CCCCCCEEeCCCC-ccCCcCChHH-----hcCCCCCeEECcCC-cccCcCCH-----------------HHhhhhhcCcE
Confidence 2555555555544 2222111111 12556666666655 23334443 222333 5556
Q ss_pred EEecCCCcce-ecCC-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCc
Q 048322 329 LEVDECKELV-CRTP-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQIL 399 (498)
Q Consensus 329 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L 399 (498)
|++++|.... .+.. ..+. |+.|++++|.+..... ..-..+++|+.|++++| .+..+++|
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L 246 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-----------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-----------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-----------HHHhcCCCCCEEECCCCceeeecCcccccCCC
Confidence 6665554432 1111 1122 6666666654432110 00023356666666666 23556779
Q ss_pred cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchhH
Q 048322 400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK 464 (498)
Q Consensus 400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~ 464 (498)
++|+++++. +++ .+|.++..+++|++|++++|.....+|..+..++|+.|++.++|.+.
T Consensus 247 ~~L~Ls~N~-l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 247 NGLDLRNNR-IYG-----TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CEEECCSSC-CEE-----CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CEEECcCCc-ccC-----cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 999998864 331 13888999999999999998655588877667899999999988553
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=1.7e-18 Score=183.15 Aligned_cols=302 Identities=11% Similarity=0.093 Sum_probs=197.8
Q ss_pred HHhhcccCCcccEEEEecCCCCC--------CcChhhHHHhhhcCC--CCCCCceEEEeecC-CCCCCccccCCCCCCcc
Q 048322 134 EAALCEKLNLHALTLEWGSQFDN--------SRDVAVEEHVLDILQ--PHKCIKKVAIRNYG-GARFPLWIGDPLFSKIE 202 (498)
Q Consensus 134 ~~~l~~~~~L~~L~L~~~~~~~~--------~~~~~~~~~~l~~l~--~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~ 202 (498)
...+.++++|++|+|+.+.-... .........+++.+. .+++|++|+++++. ...+|..++ .+++|+
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~ 276 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQ 276 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSCC
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCCC
Confidence 34588899999999998862110 001112233778888 88999999999987 456788887 699999
Q ss_pred EEeEeCCCCCC--CCCC-CCCc------cccceeeccccccceecCc--cccCCCCCCCCCCCceeeccCCCcccccccc
Q 048322 203 FLELENCNNCV--SLPS-LGLL------SSLKHLAVKGLKKLKSIES--EVYGEGFSMPFPSLKILRFENLPEWWHWDTD 271 (498)
Q Consensus 203 ~L~l~~c~~~~--~lp~-i~~l------~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 271 (498)
+|++++|..+. .+|. ++.+ ++|++|+++++ .++.+|. .+. .+++|++|+++++ .+.+..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~------~l~~L~~L~L~~N-~l~g~ip- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ------KMKKLGMLECLYN-QLEGKLP- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT------TCTTCCEEECCSC-CCEEECC-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhc------cCCCCCEEeCcCC-cCccchh-
Confidence 99999986455 4776 7665 89999999986 4667776 444 4889999999876 3442222
Q ss_pred ccCCccccCCCccceeeeccCCCccccCCCCcch----HHHH-HHhcccccccCCC------CccccEEEecCCCccee-
Q 048322 272 IKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPS----LEIL-VSKCEKLVVSLSS------YPRLCRLEVDECKELVC- 339 (498)
Q Consensus 272 ~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~----L~~L-i~~~~~l~~~~~~------l~~L~~L~l~~~~~~~~- 339 (498)
. +..+++|++|++++| .+. .+|..+.. |+.| +.++. +. .+|. +++|++|++++|.....
T Consensus 348 ~-----~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 348 A-----FGSEIKLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp C-----CEEEEEESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred h-----hCCCCCCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 1 122677888888777 454 67765543 4444 54443 22 3332 34677788777765431
Q ss_pred c-CCC-------CCCCccEEEEeccEeeee------cCCCCc---cCCCCCCcCCCCC----C-------CCCeEEecCC
Q 048322 340 R-TPI-------DSKLIKFMTISNSSLDMI------GCKGML---YDSQAGSSLPKPM----T-------TTNVLEFGKL 391 (498)
Q Consensus 340 ~-~~~-------~~~~L~~L~l~~~~l~~~------~~~~l~---~~~~~l~~lp~~l----~-------~L~~L~i~~~ 391 (498)
+ ... .+++|+.|++++|.+... .++.+. .....+..+|... . +|+.|++++|
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 1 111 355777777777744311 122232 2233455666543 1 7889999888
Q ss_pred -------CCC--CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec------CCCCCcCCCC-Cccccccce
Q 048322 392 -------LEP--GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN------CPNLTLFPEV-GLPSSLLDL 455 (498)
Q Consensus 392 -------~~~--~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~------c~~l~~lp~~-~~~~sL~~L 455 (498)
.+. .+++|+.|+++++. ++. +|..+..+++|++|++++ +...+.+|.. +..++|++|
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNS-FSK------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSC-CSS------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred cCCccChhhhhccCCCcCEEECCCCC-CCC------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 222 67789999998853 443 388888899999999954 3345566754 445789999
Q ss_pred eeccCch
Q 048322 456 YVNNCPR 462 (498)
Q Consensus 456 ~i~~c~~ 462 (498)
++++|.-
T Consensus 572 ~Ls~N~l 578 (636)
T 4eco_A 572 QIGSNDI 578 (636)
T ss_dssp ECCSSCC
T ss_pred ECCCCcC
Confidence 9998863
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=1.8e-17 Score=174.69 Aligned_cols=254 Identities=15% Similarity=0.091 Sum_probs=187.0
Q ss_pred CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCC
Q 048322 170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
+..+++|+.|+++++....+| ++. .+++|++|++++|.. +.+|.+ .+++|++|+++++..+..++ + .
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~------~ 347 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K------V 347 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C------C
T ss_pred cccCCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h------c
Confidence 556689999999999998888 565 589999999999865 899988 99999999999986666552 1 2
Q ss_pred CCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccccCCCCc---chHHHH-HHhccccc----cc
Q 048322 250 PFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL---PSLEIL-VSKCEKLV----VS 319 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L-i~~~~~l~----~~ 319 (498)
.+++|++|+++++ .++... +.. +..+++|++|++++|. +. .+|..+ ++|+.| +.+|.-.. ..
T Consensus 348 ~l~~L~~L~ls~n-~l~~~~~~~~~-----~~~~~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 348 ALPSLSYLDLSRN-ALSFSGCCSYS-----DLGTNSLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CCTTCCEEECCSS-CEEEEEECCHH-----HHCCSCCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred cCCCCCEEECcCC-ccCCCcchhhh-----hccCCcccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhh
Confidence 5899999999887 344332 111 2238999999999984 54 566544 455555 66664322 13
Q ss_pred CCCCccccEEEecCCCcceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------
Q 048322 320 LSSYPRLCRLEVDECKELVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------ 391 (498)
Q Consensus 320 ~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------ 391 (498)
+..+++|++|++++|...... ....+++|++|++++|.+.....+ .....+++|+.|++++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS----------NVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTSCCCEEC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH----------HhhccCCCCCEEECCCCcCCccC
Confidence 445899999999999876632 244588999999998865431111 01134488999999999
Q ss_pred --CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 392 --LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 392 --~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
.+..+++|++|++++|. ++.+ .|..+..+++|++|++++| .++.+|.. .++.+|+.|+++++|
T Consensus 490 ~~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 490 WGVFDTLHRLQLLNMSHNN-LLFL-----DSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTTTTCTTCCEEECCSSC-CSCE-----EGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred hhhhcccccCCEEECCCCc-CCCc-----CHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 35678889999999974 4432 2788999999999999997 58888875 344579999998865
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=1.2e-17 Score=176.08 Aligned_cols=41 Identities=22% Similarity=0.151 Sum_probs=26.2
Q ss_pred CccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 420 SMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 420 ~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
|..+..+++|++|++++| .+..++.. ...++|++|++++|.
T Consensus 466 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred HHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCc
Confidence 566677777777777776 44444322 334677777777774
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=3e-18 Score=174.16 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=77.2
Q ss_pred ccccEEEecCCCcceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CC
Q 048322 324 PRLCRLEVDECKELVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LE 393 (498)
Q Consensus 324 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~ 393 (498)
++|++|++++|...... ....+++|+.|++++|.+...... . -..+++|+.|++++| .+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN----------A-FWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----------T-TTTCTTCCEEECCSSCCCEECGGGG
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh----------H-hcCcccCCEEECCCCccCCcChhHh
Confidence 45666666665544422 123356666666665532221100 0 023478999999988 34
Q ss_pred CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 394 PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 394 ~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
..+++|++|+++++. ++.+ .|..+..+++|++|++++| .++.+|.. ...++|+.|++++++
T Consensus 344 ~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 344 ENLDKLEVLDLSYNH-IRAL-----GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcccCCEEECCCCc-cccc-----ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 567889999998864 4322 2678889999999999985 77788764 345789999998654
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-17 Score=169.33 Aligned_cols=279 Identities=15% Similarity=0.085 Sum_probs=144.8
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL 215 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l 215 (498)
.+..+++|++|+++.+.- .. + .+..+++|++|+++++....+| ++ .+++|++|++++| .+..+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l-~~---------~--~~~~l~~L~~L~Ls~N~l~~~~--~~--~l~~L~~L~L~~N-~l~~l 121 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNI-TT---------L--DLSQNTNLTYLACDSNKLTNLD--VT--PLTKLTYLNCDTN-KLTKL 121 (457)
T ss_dssp TGGGCTTCSEEECCSSCC-SC---------C--CCTTCTTCSEEECCSSCCSCCC--CT--TCTTCCEEECCSS-CCSCC
T ss_pred hhcccCCCCEEEccCCcC-Ce---------E--ccccCCCCCEEECcCCCCceee--cC--CCCcCCEEECCCC-cCCee
Confidence 355666777777765541 00 0 1445567777777776665554 33 4667777777765 44455
Q ss_pred CCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322 216 PSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 216 p~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
| ++.+++|++|+++++ .++.++ +..+++|++|+++++..+..+. +..+++|++|++++| .+
T Consensus 122 ~-~~~l~~L~~L~l~~N-~l~~l~--------l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n-~l 182 (457)
T 3bz5_A 122 D-VSQNPLLTYLNCARN-TLTEID--------VSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCSFN-KI 182 (457)
T ss_dssp C-CTTCTTCCEEECTTS-CCSCCC--------CTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECCSS-CC
T ss_pred c-CCCCCcCCEEECCCC-ccceec--------cccCCcCCEEECCCCCcccccc--------cccCCcCCEEECCCC-cc
Confidence 4 666777777777664 344442 1246677777776664333321 122677777777776 44
Q ss_pred cccCC-CCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322 296 SGKLP-ELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG 373 (498)
Q Consensus 296 ~~~lp-~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l 373 (498)
+ .+| ..+++|+.| +..+.--...+..+++|++|++++|....++ ...+++|+.|++++|.+..... ..+..+
T Consensus 183 ~-~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~----~~l~~L 256 (457)
T 3bz5_A 183 T-ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDV----STLSKL 256 (457)
T ss_dssp C-CCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCC----TTCTTC
T ss_pred c-eeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCH----HHCCCC
Confidence 4 344 223444444 4444322113444666667777666655544 4456666777766664332211 112222
Q ss_pred CcCCCCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCcc----ccCCCCccCCCCCCcCeEeeecCCCCCcC
Q 048322 374 SSLPKPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWR----QGRGLSMGFQRLTSLQSLKIWNCPNLTLF 443 (498)
Q Consensus 374 ~~lp~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~----~l~~l~~~l~~l~~L~~L~l~~c~~l~~l 443 (498)
+.+--...+|+.|++++| +.+.+++|+.|++++|..+..+. .+..+ .+..+++|++|++++| +++.+
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N-~l~~l 333 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNT-ELTEL 333 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTC-CCSCC
T ss_pred CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCC-ccccc
Confidence 222112234555555555 33455667777776666554321 11111 2344556666666553 44444
Q ss_pred CCCCccccccceeeccC
Q 048322 444 PEVGLPSSLLDLYVNNC 460 (498)
Q Consensus 444 p~~~~~~sL~~L~i~~c 460 (498)
+ .+..++|+.|+++++
T Consensus 334 ~-l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 334 D-VSHNTKLKSLSCVNA 349 (457)
T ss_dssp C-CTTCTTCSEEECCSS
T ss_pred c-cccCCcCcEEECCCC
Confidence 3 223356666666554
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=6.1e-18 Score=176.16 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=63.9
Q ss_pred hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCC-
Q 048322 136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCV- 213 (498)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~- 213 (498)
.+.++++|++|+++.+.-. ....+.+..+++|++|+++++.....|.. ++ .+++|++|++++|....
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 45 DLRACANLQVLILKSSRIN---------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp TTSSCTTCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHT--TCTTCCEEECTTCCCSSS
T ss_pred hhhcCCcccEEECCCCCcC---------ccChhhccccccCCEEECCCCccCccCHHHhc--cCCCCcEEECCCCccccc
Confidence 4556777777777665410 00113344556777777777766666543 44 46777777777753222
Q ss_pred CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322 214 SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL 262 (498)
Q Consensus 214 ~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 262 (498)
..|. ++.+++|++|+++++..+..++...++ .+++|++|+++++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-----~l~~L~~L~L~~n 158 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-----GLTSLNELEIKAL 158 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-----TCCEEEEEEEEET
T ss_pred chhhhhhccCCccEEECCCCccccccCHhhhh-----cccccCeeeccCC
Confidence 2333 667777777777776555666543222 3566666666544
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.4e-17 Score=169.71 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP 216 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp 216 (498)
+..+++|++|+++.+.-. . +.. +..+++|++|+++++....++. +. .+++|++|++++| .+..+|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~-~---------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT-D---------ITP-LKNLTKLVDILMNNNQIADITP-LA--NLTNLTGLTLFNN-QITDID 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-C---------CGG-GTTCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCCG
T ss_pred hhhhcCCCEEECCCCccC-C---------chh-hhccccCCEEECCCCccccChh-hc--CCCCCCEEECCCC-CCCCCh
Confidence 556788888888766421 0 111 4556788888888887777666 44 5788888888876 566677
Q ss_pred CCCCccccceeeccccccceecC
Q 048322 217 SLGLLSSLKHLAVKGLKKLKSIE 239 (498)
Q Consensus 217 ~i~~l~~L~~L~l~~~~~l~~i~ 239 (498)
+++.+++|++|++++|. +..++
T Consensus 129 ~~~~l~~L~~L~l~~n~-l~~~~ 150 (466)
T 1o6v_A 129 PLKNLTNLNRLELSSNT-ISDIS 150 (466)
T ss_dssp GGTTCTTCSEEEEEEEE-ECCCG
T ss_pred HHcCCCCCCEEECCCCc-cCCCh
Confidence 77888888888887753 44443
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=2.5e-17 Score=163.97 Aligned_cols=295 Identities=16% Similarity=0.131 Sum_probs=203.5
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
...+++.|++..+.- ......++ ..+++|++|+++++....+|. .+. .+++|++|++++|. +..+|+
T Consensus 43 ~l~~l~~l~l~~~~l------~~l~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM------RKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNA-IRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESCEE------SEECTHHH---HHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred ccCCceEEEecCCch------hhCChhHh---cccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCC-CCcCCH
Confidence 467899999976641 11111222 234899999999998777664 455 68999999999974 666654
Q ss_pred --CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322 218 --LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 218 --i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
++.+++|++|+++++ .++.+|...++ .+++|++|+++++ .+....+.... .+++|++|++++| .+
T Consensus 111 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l 177 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERN-DLSSLPRGIFH-----NTPKLTTLSMSNN-NLERIEDDTFQ-----ATTSLQNLQLSSN-RL 177 (390)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCCBCCTTTTS-----SCTTCCEEECCSS-CC
T ss_pred HHhcCCCCCCEEECCCC-ccCcCCHHHhc-----CCCCCcEEECCCC-ccCccChhhcc-----CCCCCCEEECCCC-cC
Confidence 889999999999986 57888876554 5899999999887 44544433222 3899999999988 44
Q ss_pred cccCC-CCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322 296 SGKLP-ELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG 373 (498)
Q Consensus 296 ~~~lp-~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l 373 (498)
+ .++ ..+++|+.| +..+. +. .++..++|++|++++|....++.. .+++|+.|++++|.+...
T Consensus 178 ~-~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~------------ 241 (390)
T 3o6n_A 178 T-HVDLSLIPSLFHANVSYNL-LS-TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT------------ 241 (390)
T ss_dssp S-BCCGGGCTTCSEEECCSSC-CS-EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC------------
T ss_pred C-ccccccccccceeeccccc-cc-ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc------------
Confidence 4 333 345556655 54432 22 334456888888888877665443 357889999888733221
Q ss_pred CcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCC
Q 048322 374 SSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPE 445 (498)
Q Consensus 374 ~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~ 445 (498)
..+ ..+++|+.|++++| .+..+++|+.|+++++ .++.+ |..+..+++|++|++++| .+..+|.
T Consensus 242 ~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 242 AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL------NLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEE------ECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred HHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCccc------CcccCCCCCCCEEECCCC-cceecCc
Confidence 111 34488999999998 3467888999999985 45443 667788999999999997 6777776
Q ss_pred C-CccccccceeeccCchhHhhhccCCCCCCCCcCCCCeEEECceEe
Q 048322 446 V-GLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFI 491 (498)
Q Consensus 446 ~-~~~~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~hi~~~~~~~~~~ 491 (498)
. ...++|++|++++|+- .. .+......+..+.+.+..+
T Consensus 313 ~~~~l~~L~~L~L~~N~i-~~-------~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSI-VT-------LKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp GHHHHTTCSEEECCSSCC-CC-------CCCCTTCCCSEEECCSSCE
T ss_pred cccccCcCCEEECCCCcc-ce-------eCchhhccCCEEEcCCCCc
Confidence 4 3458999999999862 11 1123345666677766444
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=3.2e-17 Score=166.22 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccce
Q 048322 172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLK 236 (498)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~ 236 (498)
.+++|++|+++++....+| ++ .+++|++|++++| .++.+| ++.+++|++|++++|..++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCC
T ss_pred CCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccc
Confidence 3445555555555444443 22 3455555555543 233332 4455555555555543333
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=9.1e-17 Score=164.31 Aligned_cols=250 Identities=18% Similarity=0.118 Sum_probs=173.7
Q ss_pred CCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++++|+++++....++ ..+. .+++|++|+|++| .+..+ |. ++.+++|++|+++++ .++.++...+. .
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~ 102 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT-----G 102 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST-----T
T ss_pred CCCcEEECCCCccceECHhHcc--CCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCccccc-----C
Confidence 68999999999887774 4455 6899999999997 45555 54 999999999999985 58888876554 5
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCc---chHHHH-HHhcccccc----cCCC
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL---PSLEIL-VSKCEKLVV----SLSS 322 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L-i~~~~~l~~----~~~~ 322 (498)
+++|++|+++++ .+....+.... .+++|++|+++++ .+.+..|..+ ++|+.| +.+|. +.. .+..
T Consensus 103 l~~L~~L~Ls~n-~i~~~~~~~~~-----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~ 174 (477)
T 2id5_A 103 LSNLTKLDISEN-KIVILLDYMFQ-----DLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH 174 (477)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred CCCCCEEECCCC-ccccCChhHcc-----ccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-CcccChhHhcc
Confidence 899999999987 44444332222 3899999999988 4443444433 344444 55442 221 1334
Q ss_pred CccccEEEecCCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCCC-----
Q 048322 323 YPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKLL----- 392 (498)
Q Consensus 323 l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~~----- 392 (498)
+++|+.|++.+|....++. ...+++|+.|++++| ..+..+|... .+|+.|++++|.
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~--------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW--------------PYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC--------------TTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC--------------ccccccCcccccCccccEEECcCCcccccC
Confidence 7777777777776555432 334677777777654 2333444322 589999999982
Q ss_pred ---CCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 393 ---EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 393 ---~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
+..+++|+.|+++++. ++.+. +..+..+++|++|++++| .+..++.. ...++|+.|++++|.
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNP-ISTIE-----GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp HHHHTTCTTCCEEECCSSC-CCEEC-----TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSC
T ss_pred HHHhcCccccCeeECCCCc-CCccC-----hhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCc
Confidence 3466789999999864 44321 456788999999999996 56666433 334899999999883
No 24
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.1e-16 Score=167.46 Aligned_cols=249 Identities=23% Similarity=0.159 Sum_probs=183.4
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL 220 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~ 220 (498)
.+++.|+++.+.-. .++..+ +++|++|+++++....+|. .+++|++|+|++| .++.+|. .
T Consensus 40 ~~l~~L~ls~n~L~----------~lp~~l--~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT----------TLPDCL--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN-QLTSLPV--L 99 (622)
T ss_dssp HCCCEEECCSSCCS----------CCCSCC--CTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSC-CCSCCCC--C
T ss_pred CCCcEEEecCCCcC----------ccChhh--CCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCC-cCCcCCC--C
Confidence 46888888766421 122223 2789999999999888887 3689999999996 5778887 7
Q ss_pred ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322 221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP 300 (498)
Q Consensus 221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp 300 (498)
+++|++|+++++ .++.+|. .+++|+.|+++++ .++.+... +++|++|++++| .++ .+|
T Consensus 100 l~~L~~L~Ls~N-~l~~l~~---------~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~N-~l~-~l~ 157 (622)
T 3g06_A 100 PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDN-QLA-SLP 157 (622)
T ss_dssp CTTCCEEEECSC-CCCCCCC---------CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSS-CCS-CCC
T ss_pred CCCCCEEECcCC-cCCCCCC---------CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcCC-cCC-CcC
Confidence 889999999885 5777764 3788999999876 45544321 689999999988 565 677
Q ss_pred CCcchHHHH-HHhcccccccCCC-CccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC
Q 048322 301 ELLPSLEIL-VSKCEKLVVSLSS-YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK 378 (498)
Q Consensus 301 ~~l~~L~~L-i~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~ 378 (498)
..+++|+.| +.++. +. .+|. +++|+.|++++|....++. .+++|+.|++++| .+..+|.
T Consensus 158 ~~~~~L~~L~L~~N~-l~-~l~~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N---------------~l~~l~~ 218 (622)
T 3g06_A 158 ALPSELCKLWAYNNQ-LT-SLPMLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNN---------------RLTSLPA 218 (622)
T ss_dssp CCCTTCCEEECCSSC-CS-CCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS---------------CCSSCCC
T ss_pred CccCCCCEEECCCCC-CC-CCcccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCC---------------cccccCC
Confidence 777777777 66543 22 2334 7889999999887665543 2578888888876 5556676
Q ss_pred CCCCCCeEEecCCCC----CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccccccc
Q 048322 379 PMTTTNVLEFGKLLE----PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLL 453 (498)
Q Consensus 379 ~l~~L~~L~i~~~~~----~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~ 453 (498)
.+++|+.|++++|.+ ..+++|+.|+++++ .++.+ |. .+++|++|++++| .++.+|.. ...++|+
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N-~L~~l------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSL------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSET 287 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTC
T ss_pred CCCCCCEEEccCCccCcCCCCCCcCcEEECCCC-CCCcC------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccC
Confidence 678899999999833 34556999999885 45543 55 5678999999986 67788864 4457899
Q ss_pred ceeeccCc
Q 048322 454 DLYVNNCP 461 (498)
Q Consensus 454 ~L~i~~c~ 461 (498)
.|++++|+
T Consensus 288 ~L~L~~N~ 295 (622)
T 3g06_A 288 TVNLEGNP 295 (622)
T ss_dssp EEECCSCC
T ss_pred EEEecCCC
Confidence 99999886
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=1.2e-17 Score=176.25 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=175.0
Q ss_pred CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCC
Q 048322 170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGF 247 (498)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 247 (498)
+..+++|++|+++++....+|.++. .+++|++|++++|. +..+ |. ++.+++|++|+++++.....++...++
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--- 347 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE--- 347 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT---
T ss_pred hccccCCCEEeccCCccCCCChhhc--ccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhh---
Confidence 4556788888888888888888776 57888888888864 4444 32 778888888888887544455554332
Q ss_pred CCCCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccccCCCCc---chHHHH-HHhcccccc---
Q 048322 248 SMPFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL---PSLEIL-VSKCEKLVV--- 318 (498)
Q Consensus 248 ~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L-i~~~~~l~~--- 318 (498)
.+++|++|+++++ .+.... +.. +..+++|++|++++|. +.+..|..+ ++|+.| +.++.-...
T Consensus 348 --~l~~L~~L~l~~n-~l~~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 348 --NLENLRELDLSHD-DIETSDCCNLQ-----LRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp --TCTTCCEEECCSS-CCCEEEESTTT-----TTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred --ccCcCCEEECCCC-ccccccCcchh-----cccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 5888888888876 333332 211 2238889999998884 433445444 455555 666543221
Q ss_pred -cCCCCccccEEEecCCCcceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC----
Q 048322 319 -SLSSYPRLCRLEVDECKELVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL---- 391 (498)
Q Consensus 319 -~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~---- 391 (498)
.+..+++|++|++++|...... ....+++|++|++++|.+.....+ ....+ ..+++|+.|++++|
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~~-~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-------KTNSL-QTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-------SSCGG-GGCTTCCEEECTTSCCCE
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-------cchhh-ccCCCccEEECCCCccCc
Confidence 2445788888998888765432 234578889999888754321110 00001 23488999999998
Q ss_pred ----CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 392 ----LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 392 ----~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
.++.+++|+.|+++++. ++.. .|..+..+++| +|++++| .+..+|.. ...++|+.|++++||
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNR-LTSS-----SIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCGG-----GGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cChhhhccccCCCEEECCCCc-cCcC-----ChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 35678889999999864 4332 27788899999 9999996 56666554 334789999999876
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=5.1e-17 Score=157.56 Aligned_cols=226 Identities=18% Similarity=0.190 Sum_probs=169.4
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
...+++.|+|+.+.- ..++..+..+++|++|+++++....+|..++ .+++|++|++++| .+..+|.
T Consensus 79 ~~~~l~~L~L~~n~l----------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~--~l~~L~~L~Ls~n-~l~~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPL----------PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLARN-PLRALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCC----------SSCCSCGGGGTTCSEEEEESSCCCCCCSCGG--GGTTCSEEEEESC-CCCCCCGG
T ss_pred cccceeEEEccCCCc----------hhcChhhhhCCCCCEEECCCCCccchhHHHh--ccCCCCEEECCCC-ccccCcHH
Confidence 357899999988752 1244556667999999999999999999887 6999999999997 5668886
Q ss_pred CCCccccceeeccccccceecCccccCC---CCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCC
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGE---GFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPK 294 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 294 (498)
++.+++|++|++++|+.++.+|..+... +.+..+++|++|+++++ .++.+... +..+++|++|++++| .
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~------l~~l~~L~~L~L~~N-~ 217 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS------IANLQNLKSLKIRNS-P 217 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG------GGGCTTCCEEEEESS-C
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh------hcCCCCCCEEEccCC-C
Confidence 9999999999999998888888765321 11234899999999886 44433322 233899999999998 4
Q ss_pred ccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCccee-c-CCCCCCCccEEEEeccEeeeecCCCCccCCCC
Q 048322 295 LSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVC-R-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQA 372 (498)
Q Consensus 295 l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 372 (498)
+. .+|. .+..+++|++|++++|..... + ....+++|+.|++++| ..
T Consensus 218 l~-~l~~-----------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n--------------~~ 265 (328)
T 4fcg_A 218 LS-ALGP-----------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--------------SN 265 (328)
T ss_dssp CC-CCCG-----------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC--------------TT
T ss_pred CC-cCch-----------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC--------------Cc
Confidence 54 5554 445678999999999876652 2 2345778888888654 23
Q ss_pred CCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec
Q 048322 373 GSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN 436 (498)
Q Consensus 373 l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~ 436 (498)
+..+|.. ++.+++|+.|++++|+.+..+ |.++..+++|+.+.+..
T Consensus 266 ~~~~p~~-------------~~~l~~L~~L~L~~n~~~~~i------P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 266 LLTLPLD-------------IHRLTQLEKLDLRGCVNLSRL------PSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCBCCTT-------------GGGCTTCCEEECTTCTTCCCC------CGGGGGSCTTCEEECCG
T ss_pred hhhcchh-------------hhcCCCCCEEeCCCCCchhhc------cHHHhhccCceEEeCCH
Confidence 3344433 245677889999998877654 99999999999998875
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=170.44 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=82.2
Q ss_pred CCccccEEEecCCCcce--ecCCCCCCCccEEEEeccEeee--------ecCCCCc---cCCCCCCc-CCC----CCCCC
Q 048322 322 SYPRLCRLEVDECKELV--CRTPIDSKLIKFMTISNSSLDM--------IGCKGML---YDSQAGSS-LPK----PMTTT 383 (498)
Q Consensus 322 ~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~--------~~~~~l~---~~~~~l~~-lp~----~l~~L 383 (498)
.+++|++|++++|.... ......+++|+.|++++|.+.. ..++.+. .....+.. +|. .+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 36667777777765544 2233446677777777764432 2233333 22223333 442 23677
Q ss_pred CeEEecCCCC-----CCC-CCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--Cccccccce
Q 048322 384 NVLEFGKLLE-----PGF-QILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDL 455 (498)
Q Consensus 384 ~~L~i~~~~~-----~~l-p~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L 455 (498)
+.|++++|.+ ..+ ++|+.|++++| .++. +|.++..+++|++|++++| .++.+|.. ...++|++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~------ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKS------IPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCC------CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCC-cccc------cchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 7777777722 223 46888888775 3433 4888888999999999986 67788875 234789999
Q ss_pred eeccCc
Q 048322 456 YVNNCP 461 (498)
Q Consensus 456 ~i~~c~ 461 (498)
+++++|
T Consensus 474 ~l~~N~ 479 (520)
T 2z7x_B 474 WLHTNP 479 (520)
T ss_dssp ECCSSC
T ss_pred ECcCCC
Confidence 998765
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=1.2e-17 Score=173.89 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=60.4
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC--CCccccCCCCCCccEEeEeCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR--FPLWIGDPLFSKIEFLELENCNNC 212 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~ 212 (498)
..+.++.+|++|+|+++.-.. . ....+..+++|++|+++++.... .|..+. .+++|++|++++|..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~------~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSS------L---SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNVETF 136 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCS------C---CHHHHTTCTTCCEEECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSC
T ss_pred hhccccccCCEEECCCCccCc------c---CHHHhccCCCCcEEECCCCcccccchhhhhh--ccCCccEEECCCCccc
Confidence 446678888888887765211 0 11224556888888888887663 355555 5788888888887667
Q ss_pred CCCCC--CCCccccceeeccccc
Q 048322 213 VSLPS--LGLLSSLKHLAVKGLK 233 (498)
Q Consensus 213 ~~lp~--i~~l~~L~~L~l~~~~ 233 (498)
+.+|+ ++.+++|++|+++++.
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETT
T ss_pred cccCHhhhhcccccCeeeccCCc
Confidence 77763 7788888888888754
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=6.4e-17 Score=163.83 Aligned_cols=254 Identities=22% Similarity=0.210 Sum_probs=111.4
Q ss_pred CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCC
Q 048322 170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
+..+++|++|+++++....+|.++ .+|++|++++| .+..+|.++.+++|++|++++| .+..+|.
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~-----~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N-~l~~l~~--------- 212 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNN-SLKKLPD--------- 212 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSSCCC---------
T ss_pred cCCCCCCCEEECCCCcCcccCCCc-----ccccEEECcCC-cCCcCccccCCCCCCEEECCCC-cCCcCCC---------
Confidence 344455555555555544444322 24555555554 3444555555555666655553 2333332
Q ss_pred CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC-Ccccc
Q 048322 250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS-YPRLC 327 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~-l~~L~ 327 (498)
..++|++|+++++ .++.+. . +..+++|++|++++| .++ .+|..+++|+.| +.+|. +. .+|. +++|+
T Consensus 213 ~~~~L~~L~l~~n-~l~~lp-~------~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~N~-l~-~l~~~~~~L~ 280 (454)
T 1jl5_A 213 LPLSLESIVAGNN-ILEELP-E------LQNLPFLTTIYADNN-LLK-TLPDLPPSLEALNVRDNY-LT-DLPELPQSLT 280 (454)
T ss_dssp CCTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSS-CCS-SCCSCCTTCCEEECCSSC-CS-CCCCCCTTCC
T ss_pred CcCcccEEECcCC-cCCccc-c------cCCCCCCCEEECCCC-cCC-cccccccccCEEECCCCc-cc-ccCcccCcCC
Confidence 1345666666555 333222 1 223677777777776 444 566656666666 65543 22 2333 56777
Q ss_pred EEEecCCCcceecCCCCCCCccEEEEeccEeeee-cC-CCCc---cCCCCCCcCCCCCCCCCeEEecCCCCC----CCCC
Q 048322 328 RLEVDECKELVCRTPIDSKLIKFMTISNSSLDMI-GC-KGML---YDSQAGSSLPKPMTTTNVLEFGKLLEP----GFQI 398 (498)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~-~~l~---~~~~~l~~lp~~l~~L~~L~i~~~~~~----~lp~ 398 (498)
+|++++|....++.. +++|+.|++++|.+... .. +.+. .....+..+|..+++|+.|++++|.+. .+++
T Consensus 281 ~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~~l~~ 358 (454)
T 1jl5_A 281 FLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN 358 (454)
T ss_dssp EEECCSSCCSEESCC--CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred EEECcCCccCcccCc--CCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccccccchhhh
Confidence 777777765544322 35677777776643321 11 1111 222344455555566666666666111 2334
Q ss_pred ccEEEEcCCCCCCCccccCCCCccCCCC-------------CCcCeEeeecCCCCCcCCCCCccccccceeeccC
Q 048322 399 LETLVIGNSEQLKPWRQGRGLSMGFQRL-------------TSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNC 460 (498)
Q Consensus 399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l-------------~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c 460 (498)
|++|+++++ .+++++ .+|.++..+ ++|++|+++++ .+..+|. .|++|+.|.+.+|
T Consensus 359 L~~L~L~~N-~l~~l~---~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 359 LKQLHVEYN-PLREFP---DIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSE 426 (454)
T ss_dssp CCEEECCSS-CCSSCC---CCCTTCCEEECCC-------------------------------------------
T ss_pred ccEEECCCC-CCCcCC---CChHHHHhhhhcccccccccccCcCCEEECCCC-cCCcccc--chhhHhheeCcCc
Confidence 666666653 232211 125555544 55666666653 3333322 3455666665554
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=6.7e-17 Score=170.42 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=24.1
Q ss_pred cCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322 422 GFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 422 ~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~ 461 (498)
.+..+++|++|++++|..-...|.. +.+++|++|++++|+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 3666777777777776432222322 334677777777775
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=4.6e-16 Score=157.53 Aligned_cols=174 Identities=21% Similarity=0.219 Sum_probs=95.4
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL 220 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~ 220 (498)
++|+.|+++++.-.. +.+. +++|++|+++++....+|.. .++|++|++++| .++.+|.++.
T Consensus 91 ~~L~~L~l~~n~l~~----------lp~~---~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n-~l~~lp~~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCNSLTE----------LPEL---PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNN-QLEKLPELQN 151 (454)
T ss_dssp TTCSEEECCSSCCSS----------CCCC---CTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSS-CCSSCCCCTT
T ss_pred CCCCEEEccCCcCCc----------cccc---cCCCcEEECCCCccCcccCC-----CCCCCEEECcCC-CCCCCcccCC
Confidence 467777776664210 1111 25677777777766655532 256777777775 4556777777
Q ss_pred ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322 221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP 300 (498)
Q Consensus 221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp 300 (498)
+++|++|+++++ .++.+|. .+++|++|+++++ .++.+. + +..+++|++|++++| .++ .+|
T Consensus 152 l~~L~~L~l~~N-~l~~lp~---------~~~~L~~L~L~~n-~l~~l~-~------~~~l~~L~~L~l~~N-~l~-~l~ 211 (454)
T 1jl5_A 152 SSFLKIIDVDNN-SLKKLPD---------LPPSLEFIAAGNN-QLEELP-E------LQNLPFLTAIYADNN-SLK-KLP 211 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSS-CCS-SCC
T ss_pred CCCCCEEECCCC-cCcccCC---------CcccccEEECcCC-cCCcCc-c------ccCCCCCCEEECCCC-cCC-cCC
Confidence 777777777775 3555543 2346777777665 333321 1 122666666666665 343 455
Q ss_pred CCcchHHHH-HHhccc--ccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEecc
Q 048322 301 ELLPSLEIL-VSKCEK--LVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNS 356 (498)
Q Consensus 301 ~~l~~L~~L-i~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 356 (498)
...++|+.| +.+|.- +. .+..+++|++|++++|....++. .+++|+.|++++|
T Consensus 212 ~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N 267 (454)
T 1jl5_A 212 DLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN 267 (454)
T ss_dssp CCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS
T ss_pred CCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCC
Confidence 555555555 554421 11 12235666666666655443332 1345555555554
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=6.1e-17 Score=169.06 Aligned_cols=295 Identities=13% Similarity=0.147 Sum_probs=168.6
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS 214 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~ 214 (498)
..+.++++|++|+|+.+.-. ....+.+..+++|++|+++++....+|.. .+++|++|++++|. +..
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~-l~~ 135 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIR---------SLDFHVFLFNQDLEYLDVSHNRLQNISCC----PMASLRHLDLSFND-FDV 135 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCC---------EECTTTTTTCTTCCEEECTTSCCCEECSC----CCTTCSEEECCSSC-CSB
T ss_pred hhhccCCCccEEECCCCCCC---------cCCHHHhCCCCCCCEEECCCCcCCccCcc----ccccCCEEECCCCC-ccc
Confidence 45677888888888777410 01123455668888888888887777765 37888888888864 555
Q ss_pred CC--C-CCCccccceeeccccccceecCccccCCCCCCCCCCC--ceeeccCCCcc-cccccccc-C-------------
Q 048322 215 LP--S-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL--KILRFENLPEW-WHWDTDIK-G------------- 274 (498)
Q Consensus 215 lp--~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L--~~L~l~~~~~l-~~~~~~~~-~------------- 274 (498)
+| . ++.+++|++|+++++. +...+ + ..+++| +.|+++++.-. ....++.. .
T Consensus 136 l~~p~~~~~l~~L~~L~L~~n~-l~~~~--~------~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 136 LPVCKEFGNLTKLTFLGLSAAK-FRQLD--L------LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp CCCCGGGGGCTTCCEEEEECSB-CCTTT--T------GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred cCchHhhcccCcccEEecCCCc-cccCc--h------hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 44 3 7888888888888742 33211 1 123444 66665544210 00000000 0
Q ss_pred -------Ccccc-------------------------------------------------------CCCccceeeeccC
Q 048322 275 -------NVHVD-------------------------------------------------------IFPRLQELSVVKC 292 (498)
Q Consensus 275 -------~~~~~-------------------------------------------------------~l~~L~~L~l~~c 292 (498)
..... ..++|++|++++|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 00000 0125666666665
Q ss_pred CCccccCCCCc-----chHHHH------------------------------HHhcccccccC-CCCccccEEEecCCCc
Q 048322 293 PKLSGKLPELL-----PSLEIL------------------------------VSKCEKLVVSL-SSYPRLCRLEVDECKE 336 (498)
Q Consensus 293 ~~l~~~lp~~l-----~~L~~L------------------------------i~~~~~l~~~~-~~l~~L~~L~l~~~~~ 336 (498)
.+.+.+|..+ ++|+.| +.++.-....+ ..+++|++|++++|..
T Consensus 287 -~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 287 -TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp -EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred -EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 3334566543 222222 11111111011 2366777777777755
Q ss_pred ce--ecCCCCCCCccEEEEeccEeee--------ecCCCCc---cCCCCCCc-CCC----CCCCCCeEEecCCCC-----
Q 048322 337 LV--CRTPIDSKLIKFMTISNSSLDM--------IGCKGML---YDSQAGSS-LPK----PMTTTNVLEFGKLLE----- 393 (498)
Q Consensus 337 ~~--~~~~~~~~~L~~L~l~~~~l~~--------~~~~~l~---~~~~~l~~-lp~----~l~~L~~L~i~~~~~----- 393 (498)
.. ......+++|+.|++++|.+.. ..++.+. .....+.. +|. .+++|+.|++++|.+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 44 1223446777777777774442 1222222 22223333 443 237788888888722
Q ss_pred CCC-CCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 394 PGF-QILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 394 ~~l-p~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
..+ ++|+.|+++++ .++. +|.++..+++|++|++++| .++.+|.. ...++|+.|+++++|
T Consensus 446 ~~l~~~L~~L~L~~N-~l~~------ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 446 RCLPPKVKVLDLHNN-RIMS------IPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCTTCSEEECCSS-CCCC------CCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred hhhcCcCCEEECCCC-cCcc------cChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 234 46888888875 4543 4888889999999999985 77888874 345789999998765
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=8.7e-17 Score=163.90 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=146.4
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP 216 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp 216 (498)
+.++.+|++|+++.+.-.. +. .+..+++|++|+++++....+|. +. .+++|++|++++| .+..+|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~----------~~-~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~l~~n-~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIAD----------IT-PLANLTNLTGLTLFNNQITDIDP-LK--NLTNLNRLELSSN-TISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC----------CG-GGTTCTTCCEEECCSSCCCCCGG-GT--TCTTCSEEEEEEE-EECCCG
T ss_pred hhccccCCEEECCCCcccc----------Ch-hhcCCCCCCEEECCCCCCCCChH-Hc--CCCCCCEEECCCC-ccCCCh
Confidence 5667777777776654210 01 14455777777777776666654 33 4677777777765 345555
Q ss_pred CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
.++.+++|++|.+.+ .+..++. +..+++|+.|+++++. +..+. .+..+++|++|++++|. +.
T Consensus 151 ~~~~l~~L~~L~l~~--~~~~~~~-------~~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~l~~n~-l~ 212 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGN--QVTDLKP-------LANLTTLERLDISSNK-VSDIS-------VLAKLTNLESLIATNNQ-IS 212 (466)
T ss_dssp GGTTCTTCSEEEEEE--SCCCCGG-------GTTCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSSC-CC
T ss_pred hhccCCcccEeecCC--cccCchh-------hccCCCCCEEECcCCc-CCCCh-------hhccCCCCCEEEecCCc-cc
Confidence 566666666666642 2222221 1235666666665542 22221 01125555555555542 22
Q ss_pred ccCC-CCcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeee----ecCCCCc--
Q 048322 297 GKLP-ELLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDM----IGCKGML-- 367 (498)
Q Consensus 297 ~~lp-~~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~l~-- 367 (498)
+..| ..+++|+.| +.+|.--. ..+..+++|++|++++|.....+....+++|+.|++++|.+.. ..++.|.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 213 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred ccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence 1111 122333333 33332110 0222355555555555554443334445555555555553221 1111111
Q ss_pred -cCCCCCCcCC--CCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 368 -YDSQAGSSLP--KPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 368 -~~~~~l~~lp--~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
.....+..++ ..+++|+.|++++| +...+++|+.|++++| .++. ...+..+++|++|++++|.
T Consensus 293 ~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~-------~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSD-------VSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCC-------CGGGTTCTTCCEEECCSSC
T ss_pred EcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCC-------chhhccCCCCCEEeCCCCc
Confidence 0111222222 24477888888887 3445677888888776 3443 2356778888888888874
Q ss_pred CCCcCCCCCccccccceeeccCc
Q 048322 439 NLTLFPEVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 439 ~l~~lp~~~~~~sL~~L~i~~c~ 461 (498)
. ..++....+++|+.|++++|+
T Consensus 365 l-~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 365 I-SDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CBCGGGTTCTTCCEEECCCEE
T ss_pred c-CccchhhcCCCCCEEeccCCc
Confidence 4 443334445788888888875
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=1e-15 Score=148.71 Aligned_cols=234 Identities=14% Similarity=0.132 Sum_probs=160.4
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++++|+++++....+|. .+. .+++|++|++++|. +..+ |. ++.+++|++|+++++ .++.+|..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~-------- 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-QLKELPEKM-------- 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--------
T ss_pred CCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC-cCCccChhh--------
Confidence 678888888888777765 454 58888888888864 4444 54 888888888888875 466666532
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc-ccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS-GKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL 329 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L 329 (498)
+++|++|+++++ .+..+.+... ..+++|++|++++|..-. +..+. .+..+++|++|
T Consensus 120 ~~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~-----------------~~~~l~~L~~L 176 (330)
T 1xku_A 120 PKTLQELRVHEN-EITKVRKSVF-----NGLNQMIVVELGTNPLKSSGIENG-----------------AFQGMKKLSYI 176 (330)
T ss_dssp CTTCCEEECCSS-CCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGBCTT-----------------GGGGCTTCCEE
T ss_pred cccccEEECCCC-cccccCHhHh-----cCCccccEEECCCCcCCccCcChh-----------------hccCCCCcCEE
Confidence 468888888776 3444432222 227888888888773321 12222 34457888888
Q ss_pred EecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccE
Q 048322 330 EVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILET 401 (498)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~ 401 (498)
++++|....++... +++|++|++++|.+...... .+ ..+++|+.|++++| .+..+++|+.
T Consensus 177 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~----------~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 177 RIADTNITTIPQGL-PPSLTELHLDGNKITKVDAA----------SL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp ECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTG----------GG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred ECCCCccccCCccc-cccCCEEECCCCcCCccCHH----------Hh-cCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 88888766655433 37889999887743321110 01 23478889999888 2446778999
Q ss_pred EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--------cccccceeeccCch
Q 048322 402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--------PSSLLDLYVNNCPR 462 (498)
Q Consensus 402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~i~~c~~ 462 (498)
|+++++ .++. +|.++..+++|++|++++| .++.+|...+ .++|+.|++.++|-
T Consensus 245 L~L~~N-~l~~------lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 245 LHLNNN-KLVK------VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSS-CCSS------CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCC-cCcc------CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 999986 4543 3888999999999999985 6777775432 26788899998873
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=169.00 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=65.4
Q ss_pred CCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC-CCC-Ccc
Q 048322 380 MTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF-PEV-GLP 449 (498)
Q Consensus 380 l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l-p~~-~~~ 449 (498)
+++|+.|++++| .+.++++|++|++++|.-... .+|..+..+++|++|++++| .+..+ |.. ...
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 493 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----FLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSL 493 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-----EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc-----cchhhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence 367777777777 245567788888777642110 13778888999999999987 45555 433 445
Q ss_pred ccccceeeccCchhHhhhccCCCCCCCCcCCCCeEEECceEee
Q 048322 450 SSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIY 492 (498)
Q Consensus 450 ~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~hi~~~~~~~~~~~ 492 (498)
++|++|++++|. +.. .....+....++..+++.+..+.
T Consensus 494 ~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCccc
Confidence 789999999883 221 11122345567777787765443
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=8.8e-16 Score=155.95 Aligned_cols=318 Identities=14% Similarity=0.075 Sum_probs=187.8
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-CC-CccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RF-PLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
+++++|+|+.+.- .......+..+++|++|+++++... .+ |..+. .+++|++|++++|......|.
T Consensus 30 ~~l~~L~Ls~n~i---------~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSI---------AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp TTCCEEECCSSCC---------CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT--TCTTCCEEECTTCTTCEECTTT
T ss_pred CccCEEEecCCcc---------CcCChhHhccCccccEEECcCCcccceECccccc--ccccCCEEeCCCCccCccChhh
Confidence 6899999987752 0112345667799999999998764 33 44555 589999999999754444454
Q ss_pred CCCccccceeecccccccee-cCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 218 LGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
++.+++|++|++++|. +.. ++.. ..+..+++|++|+++++ .+....+.. .+..+++|++|++++| .+.
T Consensus 99 ~~~l~~L~~L~L~~n~-l~~~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~~l~~L~~L~L~~n-~l~ 167 (455)
T 3v47_A 99 FNGLANLEVLTLTQCN-LDGAVLSG----NFFKPLTSLEMLVLRDN-NIKKIQPAS----FFLNMRRFHVLDLTFN-KVK 167 (455)
T ss_dssp TTTCTTCCEEECTTSC-CBTHHHHS----STTTTCTTCCEEECCSS-BCCSCCCCG----GGGGCTTCCEEECTTC-CBS
T ss_pred ccCcccCCEEeCCCCC-CCccccCc----ccccCcccCCEEECCCC-ccCccCccc----ccCCCCcccEEeCCCC-ccc
Confidence 8999999999999874 433 2221 11235899999999887 344443221 1223899999999988 444
Q ss_pred ccCCCCcchH-----HHH-HHhcccccc-----------cCCCCccccEEEecCCCccee-----cCCCCCCCccEEEEe
Q 048322 297 GKLPELLPSL-----EIL-VSKCEKLVV-----------SLSSYPRLCRLEVDECKELVC-----RTPIDSKLIKFMTIS 354 (498)
Q Consensus 297 ~~lp~~l~~L-----~~L-i~~~~~l~~-----------~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~ 354 (498)
+..|..+..+ +.| +..+.-... .+..+++|++|++++|..... ......++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 4556555433 333 333322110 112347788888888854321 011112344444444
Q ss_pred ccEeeeecC------------------CCCc---cCCCCCCcC-C---CCCCCCCeEEecCC--------CCCCCCCccE
Q 048322 355 NSSLDMIGC------------------KGML---YDSQAGSSL-P---KPMTTTNVLEFGKL--------LEPGFQILET 401 (498)
Q Consensus 355 ~~~l~~~~~------------------~~l~---~~~~~l~~l-p---~~l~~L~~L~i~~~--------~~~~lp~L~~ 401 (498)
+|....... +.+. .....+..+ | ..+++|+.|++++| .+..+++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 331100000 0000 000112111 2 23478889999888 3456778999
Q ss_pred EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC-CCC-CccccccceeeccCchhHhhhccCCCCCCCCcC
Q 048322 402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF-PEV-GLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIA 479 (498)
Q Consensus 402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l-p~~-~~~~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~ 479 (498)
|+++++. ++.+ .|..+..+++|++|++++| .+..+ |.. ...++|++|++++|. ++. .....+....
T Consensus 328 L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~ 395 (455)
T 3v47_A 328 LNLSQNF-LGSI-----DSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKS----VPDGIFDRLT 395 (455)
T ss_dssp EECCSSC-CCEE-----CGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCT
T ss_pred EECCCCc-cCCc-----ChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-ccc----CCHhHhccCC
Confidence 9998863 4332 1567788999999999987 55655 332 345889999999874 221 1111234456
Q ss_pred CCCeEEECceEee
Q 048322 480 HIPWVVIDGKFIY 492 (498)
Q Consensus 480 hi~~~~~~~~~~~ 492 (498)
.+..+++.+..+.
T Consensus 396 ~L~~L~l~~N~l~ 408 (455)
T 3v47_A 396 SLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCBC
T ss_pred cccEEEccCCCcc
Confidence 6777777665443
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=171.04 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=66.5
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHh-hhcCCCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHV-LDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNC 212 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~ 212 (498)
..+.++++|++|+|+++.... .+ .+.+..+++|++|+++++..... |.++. .+++|++|+|++|...
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~---------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPL---------TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYFCGLS 110 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCC---------EECTTTTSSCTTCCEEECTTCCCCEECTTSSC--SCSSCCCEECTTCCCS
T ss_pred hHCcccccCeEEeCCCCCCcc---------ccCHHHhcCCCCCCEEECCCCcCcccCHhHcc--CCcccCEeeCcCCCCC
Confidence 345667777777777663210 11 23455667777777777766554 56666 4777777777776443
Q ss_pred CCCCC---CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCC
Q 048322 213 VSLPS---LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENL 262 (498)
Q Consensus 213 ~~lp~---i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~ 262 (498)
..+|. ++.+++|++|+++++. +..++. ..+ ..+++|++|+++++
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~-----~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSF-----GKLNSLKSIDFSSN 158 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGG-----GTCSSCCEEEEESS
T ss_pred cccccCccccccCCCCEEECCCCc-ccccccchhH-----hhCCCCCEEECCCC
Confidence 33443 6777777777777753 333321 122 24777777777654
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=1.3e-15 Score=154.69 Aligned_cols=216 Identities=16% Similarity=0.107 Sum_probs=120.4
Q ss_pred CCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++++|+++++....+ |..+. .+++|++|+|++| .+..+++ ++.+++|++|+++++ .+..++...++ .
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFE-----Y 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSS-----S
T ss_pred CCccEEECcCCcCceECHHHcC--CCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhc-----c
Confidence 4666666666665544 23343 4666777777664 3444442 666667777777664 35555554333 3
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
+++|++|+++++ .++.+...... .+++|++|++++|..+. .+|.. .+..+++|++|+
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~l~~~~~l~-~i~~~----------------~~~~l~~L~~L~ 202 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYAFN-----RVPSLMRLDLGELKKLE-YISEG----------------AFEGLFNLKYLN 202 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTT-----TCTTCCEEECCCCTTCC-EECTT----------------TTTTCTTCCEEE
T ss_pred cCCCCEEECCCC-CcceeCHhHHh-----cCCcccEEeCCCCCCcc-ccChh----------------hccCCCCCCEEE
Confidence 666677766655 33333322222 26667777776665554 44321 344466667777
Q ss_pred ecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEE
Q 048322 331 VDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETL 402 (498)
Q Consensus 331 l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L 402 (498)
+++|....++....+++|+.|++++|.+...... .+ ..+++|+.|++++| .+..+++|+.|
T Consensus 203 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 203 LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG----------SF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp CTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG----------GG-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCcccccccccccccccEEECcCCcCcccCcc----------cc-cCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 7766665555555566677777666532221100 00 22356666666666 24456667777
Q ss_pred EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
+++++ .++.+. +..+..+++|++|++++++
T Consensus 272 ~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHN-NLSSLP-----HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSS-CCSCCC-----TTSSTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCccC-----hHHhccccCCCEEEccCCC
Confidence 77764 344321 3345667777777777654
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=3.7e-15 Score=151.18 Aligned_cols=230 Identities=21% Similarity=0.265 Sum_probs=172.6
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC-C-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP-S-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp-~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
....++..+.+...+|..+. ++|++|+|++| .+..++ . ++.+++|++|+++++ .+..++...+. .++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-----~l~ 123 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP----SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFN-----GLA 123 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC----TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCT
T ss_pred CCcEEEECCCCcCccCCCCC----CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhcc-----Ccc
Confidence 34677777777788887553 68999999996 566554 3 899999999999996 57777755443 599
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|++|+++++ .++.+.++.... +++|++|++++| .+. .+|.. .+..+++|++|+++
T Consensus 124 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~~~~~----------------~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 124 SLNTLELFDN-WLTVIPSGAFEY-----LSKLRELWLRNN-PIE-SIPSY----------------AFNRVPSLMRLDLG 179 (452)
T ss_dssp TCCEEECCSS-CCSBCCTTTSSS-----CTTCCEEECCSC-CCC-EECTT----------------TTTTCTTCCEEECC
T ss_pred cCCEEECCCC-cCCccChhhhcc-----cCCCCEEECCCC-Ccc-eeCHh----------------HHhcCCcccEEeCC
Confidence 9999999987 456555433333 899999999998 454 44431 46678999999999
Q ss_pred CCCcce-ec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecCC--------CCCCCCCc
Q 048322 333 ECKELV-CR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGKL--------LEPGFQIL 399 (498)
Q Consensus 333 ~~~~~~-~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~~--------~~~~lp~L 399 (498)
+|..+. ++ ....+++|+.|++++|.+ ..+| ..+++|+.|++++| .+..+++|
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNI---------------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCC---------------SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred CCCCccccChhhccCCCCCCEEECCCCcc---------------cccccccccccccEEECcCCcCcccCcccccCccCC
Confidence 976655 22 234589999999998733 3333 24489999999999 35678889
Q ss_pred cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC--ccccccceeeccCc
Q 048322 400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG--LPSSLLDLYVNNCP 461 (498)
Q Consensus 400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~ 461 (498)
+.|+++++. ++.+ .+..+..+++|++|++++| .++.+|... ..++|+.|+++++|
T Consensus 245 ~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNSQ-VSLI-----ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEEeCCCc-CceE-----CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 999999854 4332 1667889999999999996 788888653 35889999998765
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=160.83 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=72.0
Q ss_pred HHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCC
Q 048322 134 EAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCV 213 (498)
Q Consensus 134 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~ 213 (498)
...+.++++|++|+|+.+.-. ...++.+..+++|++|+++++....+|.. .+++|++|++++|....
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQ---------YLDISVFKFNQELEYLDLSHNKLVKISCH----PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCC---------EEEGGGGTTCTTCCEEECCSSCCCEEECC----CCCCCSEEECCSSCCSS
T ss_pred hhhccccccccEEecCCCccC---------CcChHHhhcccCCCEEecCCCceeecCcc----ccCCccEEeccCCcccc
Confidence 345677888888888777520 01134456668888888888887777765 37888888888864333
Q ss_pred -CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCC--ceeeccCC
Q 048322 214 -SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL--KILRFENL 262 (498)
Q Consensus 214 -~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L--~~L~l~~~ 262 (498)
.+|. ++.+++|++|+++++. +... .+ ..+++| +.|++.++
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~-l~~~--~~------~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTH-LEKS--SV------LPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESS-CCGG--GG------GGGTTSCEEEEEEEEC
T ss_pred ccchhhhccCCcceEEEecCcc-cchh--hc------cccccceeeEEEeecc
Confidence 3554 8888888888888753 3321 11 236666 88888765
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=1.8e-15 Score=146.93 Aligned_cols=228 Identities=15% Similarity=0.200 Sum_probs=170.6
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
.+++++++++++...+|..+. ++|++|++++| .++.+|+ ++.+++|++|+++++ .+..++...++ .+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l 99 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP----PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFA-----PL 99 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC----TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTT-----TC
T ss_pred CCCeEEEecCCCccccCccCC----CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhc-----CC
Confidence 478999999988888887653 68999999996 5666664 899999999999986 46666443332 58
Q ss_pred CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEe
Q 048322 252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEV 331 (498)
Q Consensus 252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l 331 (498)
++|++|+++++ .++.+.... +++|++|++++| .+. .++. ..+..+++|+.|++
T Consensus 100 ~~L~~L~Ls~n-~l~~l~~~~--------~~~L~~L~l~~n-~l~-~~~~----------------~~~~~l~~L~~L~l 152 (330)
T 1xku_A 100 VKLERLYLSKN-QLKELPEKM--------PKTLQELRVHEN-EIT-KVRK----------------SVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSS-CCSBCCSSC--------CTTCCEEECCSS-CCC-BBCH----------------HHHTTCTTCCEEEC
T ss_pred CCCCEEECCCC-cCCccChhh--------cccccEEECCCC-ccc-ccCH----------------hHhcCCccccEEEC
Confidence 99999999876 344443221 579999999988 443 3331 13456889999999
Q ss_pred cCCCcce----ecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC--------CCCCCCC
Q 048322 332 DECKELV----CRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL--------LEPGFQI 398 (498)
Q Consensus 332 ~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~--------~~~~lp~ 398 (498)
++|.... ......+++|+.|++++| .+..+|..+ ++|+.|++++| .+..+++
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n---------------~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADT---------------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSS---------------CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCC---------------ccccCCccccccCCEEECCCCcCCccCHHHhcCCCC
Confidence 9987643 122344899999999886 444555544 78999999998 3457788
Q ss_pred ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322 399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~ 461 (498)
|+.|+++++. ++.+ .+..+..+++|++|++++| .+..+|.. ...++|++|++++|+
T Consensus 218 L~~L~Ls~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 218 LAKLGLSFNS-ISAV-----DNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCEEECCSSC-CCEE-----CTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCc-Ccee-----ChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 9999999864 4332 1456788999999999997 77888875 445899999999885
No 42
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=1.8e-15 Score=158.14 Aligned_cols=231 Identities=19% Similarity=0.135 Sum_probs=178.1
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL 220 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~ 220 (498)
++|+.|+++.+.- .. +.. .+++|++|++++|....+|. .+++|++|++++| .+..+|. .
T Consensus 61 ~~L~~L~L~~N~l-~~---------lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~--~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNL-TS---------LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSN-PLTHLPA--L 119 (622)
T ss_dssp TTCSEEEECSCCC-SC---------CCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSC-CCCCCCC--C
T ss_pred CCCcEEEecCCCC-CC---------CCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCC-cCCCCCC--C
Confidence 6899999987752 11 111 35899999999999888887 3789999999986 6777887 6
Q ss_pred ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322 221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP 300 (498)
Q Consensus 221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp 300 (498)
+++|+.|+++++ .++.+|. .+++|++|+++++ .++.+.. . +++|+.|++++| .++ .+|
T Consensus 120 l~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~Ls~N-~l~~l~~----~-----~~~L~~L~L~~N-~l~-~l~ 177 (622)
T 3g06_A 120 PSGLCKLWIFGN-QLTSLPV---------LPPGLQELSVSDN-QLASLPA----L-----PSELCKLWAYNN-QLT-SLP 177 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSCCCC----C-----CTTCCEEECCSS-CCS-CCC
T ss_pred CCCcCEEECCCC-CCCcCCC---------CCCCCCEEECcCC-cCCCcCC----c-----cCCCCEEECCCC-CCC-CCc
Confidence 789999999985 5777764 2689999999887 4444321 1 678999999987 565 688
Q ss_pred CCcchHHHH-HHhcccccccCCC-CccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC
Q 048322 301 ELLPSLEIL-VSKCEKLVVSLSS-YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK 378 (498)
Q Consensus 301 ~~l~~L~~L-i~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~ 378 (498)
..+++|+.| +.++. +. .+|. +++|+.|++++|....++.. +++|+.|++++| .++.+|.
T Consensus 178 ~~~~~L~~L~Ls~N~-l~-~l~~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N---------------~L~~lp~ 238 (622)
T 3g06_A 178 MLPSGLQELSVSDNQ-LA-SLPTLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN---------------RLTSLPV 238 (622)
T ss_dssp CCCTTCCEEECCSSC-CS-CCCCCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS---------------CCSCCCC
T ss_pred ccCCCCcEEECCCCC-CC-CCCCccchhhEEECcCCcccccCCC--CCCCCEEEccCC---------------ccCcCCC
Confidence 777888888 77654 33 3444 78999999999987766543 589999999886 5666777
Q ss_pred CCCCCCeEEecCCCCC----CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC
Q 048322 379 PMTTTNVLEFGKLLEP----GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL 440 (498)
Q Consensus 379 ~l~~L~~L~i~~~~~~----~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l 440 (498)
.+++|+.|++++|.+. .+++|+.|++++| .++. +|..+..+++|+.|++++|+.-
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N-~L~~------lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLTR------LPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCCS------CCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCcCcEEECCCCCCCcCCcccccCcEEeCCCC-CCCc------CCHHHhhccccCEEEecCCCCC
Confidence 7799999999999333 4456999999986 4544 3888999999999999997643
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=2.2e-15 Score=152.39 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=94.7
Q ss_pred CCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++++|+++++....++ ..+. .+++|++|+|++| .+..+++ +..+++|++|+++++ .++.++...+. .
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFV-----Y 134 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSC-----S
T ss_pred CCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhh-----c
Confidence 34455555544443332 2222 3445555555543 2333332 444555555555443 34444433222 2
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
+++|++|+++++ .++.+.+.... .+++|++|++++|..+. .++.. .+..+++|++|+
T Consensus 135 l~~L~~L~L~~N-~i~~~~~~~~~-----~l~~L~~L~l~~~~~l~-~i~~~----------------~~~~l~~L~~L~ 191 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESIPSYAFN-----RIPSLRRLDLGELKRLS-YISEG----------------AFEGLSNLRYLN 191 (440)
T ss_dssp CSSCCEEECCSC-CCCEECTTTTT-----TCTTCCEEECCCCTTCC-EECTT----------------TTTTCSSCCEEE
T ss_pred cccCceeeCCCC-cccccCHHHhh-----hCcccCEeCCCCCCCcc-eeCcc----------------hhhcccccCeec
Confidence 445555555443 22222211111 14555555555443332 22220 233345555555
Q ss_pred ecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEE
Q 048322 331 VDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETL 402 (498)
Q Consensus 331 l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L 402 (498)
+++|....++....+++|+.|++++|.+...... . + ..+++|+.|++++| .+..+++|+.|
T Consensus 192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~---~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG-------S---F-QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp CTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTT-------T---T-TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred CCCCcCccccccCCCcccCEEECCCCccCccChh-------h---h-ccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 5555444444444455555555555422211000 0 0 12245555555555 23445666666
Q ss_pred EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
+++++ .++.+. +..+..+++|+.|++++++
T Consensus 261 ~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHN-NLTLLP-----HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTS-CCCCCC-----TTTTSSCTTCCEEECCSSC
T ss_pred ECCCC-CCCccC-----hhHhccccCCCEEEcCCCC
Confidence 66663 343321 3345566677777766543
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=165.16 Aligned_cols=146 Identities=10% Similarity=0.007 Sum_probs=98.5
Q ss_pred cCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecC-CCCC-CccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYG-GARF-PLWIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
..+++.|+|+.+.-. ......+..+++|++|+++++. ...+ |..+. .+++|++|+|++|......|.
T Consensus 23 p~~l~~LdLs~N~i~---------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR---------TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CTTCCEEEEESCCCC---------EECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTT
T ss_pred CCCcCEEECCCCcCC---------ccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHh
Confidence 368999999987520 1123456778999999999984 3344 55666 689999999999754444465
Q ss_pred -CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322 218 -LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 218 -i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
++.+++|++|++++|.-...++.. ..+..+++|++|+++++ .+....+. ..+..+++|++|++++| .+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~~~L~~L~~L~Ls~N-~l~~~~~~----~~~~~L~~L~~L~Ls~N-~i~ 161 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKD----GYFRNLKALTRLDLSKN-QIRSLYLH----PSFGKLNSLKSIDFSSN-QIF 161 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTT----CCCSSCSSCCEEEEESC-CCCCCCCC----GGGGTCSSCCEEEEESS-CCC
T ss_pred HccCCcccCEeeCcCCCCCcccccC----ccccccCCCCEEECCCC-cccccccc----hhHhhCCCCCEEECCCC-cCC
Confidence 999999999999997433333332 11235999999999987 33333211 11233899999999987 444
Q ss_pred ccCCCCcchH
Q 048322 297 GKLPELLPSL 306 (498)
Q Consensus 297 ~~lp~~l~~L 306 (498)
+..|..+..+
T Consensus 162 ~~~~~~l~~l 171 (844)
T 3j0a_A 162 LVCEHELEPL 171 (844)
T ss_dssp CCCSGGGHHH
T ss_pred eeCHHHcccc
Confidence 3555555444
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=6.1e-15 Score=149.05 Aligned_cols=230 Identities=18% Similarity=0.235 Sum_probs=173.3
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
..+.++..+.+...+|..+. ++++.|+|++| .+..+++ ++.+++|++|+++++ .+..++...+. .++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~-----~l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS----TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFN-----GLA 112 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC----TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGT-----TCS
T ss_pred CCCEEEeCCCCcCcCCCCCC----CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhcc-----CCc
Confidence 35677778878888888654 68999999996 5666653 899999999999996 57777765444 589
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|++|+++++ .++.+.++.... +++|++|+++++ .+. .+|.. .+..+++|++|+++
T Consensus 113 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~i~-~~~~~----------------~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 113 NLNTLELFDN-RLTTIPNGAFVY-----LSKLKELWLRNN-PIE-SIPSY----------------AFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSS-CCSSCCTTTSCS-----CSSCCEEECCSC-CCC-EECTT----------------TTTTCTTCCEEECC
T ss_pred cCCEEECCCC-cCCeeCHhHhhc-----cccCceeeCCCC-ccc-ccCHH----------------HhhhCcccCEeCCC
Confidence 9999999987 566555333333 899999999988 454 44431 45668999999999
Q ss_pred CCCcce-ec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecCC--------CCCCCCCc
Q 048322 333 ECKELV-CR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGKL--------LEPGFQIL 399 (498)
Q Consensus 333 ~~~~~~-~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~~--------~~~~lp~L 399 (498)
+|..+. ++ ....+++|+.|++++|. +..+| ..+++|+.|++++| .+..+++|
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~---------------l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCN---------------LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSC---------------CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCcceeCcchhhcccccCeecCCCCc---------------CccccccCCCcccCEEECCCCccCccChhhhccCccC
Confidence 976555 22 23458999999999873 33343 24488999999999 45677889
Q ss_pred cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC--ccccccceeeccCc
Q 048322 400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG--LPSSLLDLYVNNCP 461 (498)
Q Consensus 400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~ 461 (498)
+.|+++++. ++.+ .+..+..+++|++|++++| .++.+|... ..++|+.|+++++|
T Consensus 234 ~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQSQ-IQVI-----ERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTCC-CCEE-----CTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCc-eeEE-----ChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 999999854 4432 1667889999999999995 788888653 34899999998765
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=154.48 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=22.4
Q ss_pred CccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 420 SMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 420 ~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
|.++..+++|++|++++| .++.+|.. +..++|++|++++++
T Consensus 270 ~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 444555666666666654 45555543 223566666665543
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.4e-15 Score=162.62 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCc-cCCCCCCcCeEeeecCCCCCcCCCCC--
Q 048322 379 PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSM-GFQRLTSLQSLKIWNCPNLTLFPEVG-- 447 (498)
Q Consensus 379 ~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~lp~~~-- 447 (498)
.+++|+.|++++| .+.++++|+.|++++ +.++.+ |. .+..+++|++|++++| .++.++...
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 605 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTL------PASVFNNQVSLKSLNLQKN-LITSVEKKVFG 605 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC------CTTTTTTCTTCCEEECTTS-CCCBCCHHHHH
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcC------CHhHhCCCCCCCEEECCCC-cCCccChhHhc
Confidence 4478888888887 245667788888876 445443 44 4578889999999885 777776542
Q ss_pred -ccccccceeeccCc
Q 048322 448 -LPSSLLDLYVNNCP 461 (498)
Q Consensus 448 -~~~sL~~L~i~~c~ 461 (498)
..++|+.|+++++|
T Consensus 606 ~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 606 PAFRNLTELDMRFNP 620 (680)
T ss_dssp HHHTTCSEEECTTCC
T ss_pred ccccccCEEEccCCC
Confidence 34788899988766
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=1.8e-15 Score=161.68 Aligned_cols=303 Identities=14% Similarity=0.105 Sum_probs=161.7
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCV 213 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~ 213 (498)
..+.++++|++|+|+++.-... ....+..+++|++|+++++....+|.. +. .+++|++|++++| .+.
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~n-~l~ 110 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKL---------EPELCQKLPMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMSN-SIQ 110 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCC---------CTTHHHHCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSS-CCC
T ss_pred HHHhCCCcCcEEECCCCccCcc---------CHHHHhcccCcCEEECCCCccCccChhhhc--cCCCCCEEECCCC-ccC
Confidence 4567788899998887642110 012223357888888888888777763 55 5788888888886 456
Q ss_pred CCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeecc
Q 048322 214 SLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK 291 (498)
Q Consensus 214 ~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (498)
.+|+ ++.+++|++|+++++. +..++...+ ..+++|++|+++++ .++...+...+ ...+++|++|++++
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~~---~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQ-----VQLENLQELLLSNN-KIQALKSEELD---IFANSSLKKLELSS 180 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSC-CSCCCCCSS-----SCCTTCCEEECCSS-CCCCBCHHHHG---GGTTCEESEEECTT
T ss_pred ccChhHccccCCCCEEECCCCc-ccccCchhh-----cccccCCEEEccCC-cccccCHHHhh---ccccccccEEECCC
Confidence 6663 8888888888888864 444433322 24778888888765 33333211100 01146677777776
Q ss_pred CCCccccCCCCcch---H---------------------------HHH-HHhcccccc----cCCCC--ccccEEEecCC
Q 048322 292 CPKLSGKLPELLPS---L---------------------------EIL-VSKCEKLVV----SLSSY--PRLCRLEVDEC 334 (498)
Q Consensus 292 c~~l~~~lp~~l~~---L---------------------------~~L-i~~~~~l~~----~~~~l--~~L~~L~l~~~ 334 (498)
| .+++..|..+.. | +.| +.++. +.. .+..+ ++|++|++++|
T Consensus 181 n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 181 N-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp C-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTS
T ss_pred C-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCC
Confidence 6 333233332211 1 111 11111 111 11112 23677777666
Q ss_pred Ccceec--CCCCCCCccEEEEeccEeeee------cCCCCc----cCC-----CCCCcCC-------CCCCCCCeEEecC
Q 048322 335 KELVCR--TPIDSKLIKFMTISNSSLDMI------GCKGML----YDS-----QAGSSLP-------KPMTTTNVLEFGK 390 (498)
Q Consensus 335 ~~~~~~--~~~~~~~L~~L~l~~~~l~~~------~~~~l~----~~~-----~~l~~lp-------~~l~~L~~L~i~~ 390 (498)
.....+ ....+++|++|++++|.+... .++.+. ..+ -.+..+| ..+++|+.|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 554432 233466677777766643321 122111 000 0000122 2336777777777
Q ss_pred C--------CCCCCCCccEEEEcCCC-----------------CCCCc----cccCC-CCccCCCCCCcCeEeeecCCCC
Q 048322 391 L--------LEPGFQILETLVIGNSE-----------------QLKPW----RQGRG-LSMGFQRLTSLQSLKIWNCPNL 440 (498)
Q Consensus 391 ~--------~~~~lp~L~~L~l~~c~-----------------~L~~l----~~l~~-l~~~l~~l~~L~~L~l~~c~~l 440 (498)
| .+..+++|++|++++|. .++.+ ..+.. .|..+..+++|++|++++|...
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 6 23455667777776642 11100 00111 1556777888888888876543
Q ss_pred CcCCCC--CccccccceeeccCc
Q 048322 441 TLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 441 ~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
..+|.. .-.++|++|++++|.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCS
T ss_pred cccCcccccCcccccEEecCCCC
Confidence 445532 234677777777664
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=8.9e-17 Score=154.88 Aligned_cols=244 Identities=15% Similarity=0.141 Sum_probs=167.2
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEee-cCC-CCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRN-YGG-ARFPLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~-~~~-~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
.+++.|+|+.+.-.. ...++..+..+++|++|++++ +.. ..+|..+. .+++|++|++++|.....+|.
T Consensus 50 ~~l~~L~L~~~~l~~-------~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK-------PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSS-------CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccC-------CcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHH
Confidence 578899998775210 002345566779999999995 553 36788887 699999999999755557776
Q ss_pred CCCccccceeeccccccce-ecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCC-ccceeeeccCCCc
Q 048322 218 LGLLSSLKHLAVKGLKKLK-SIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFP-RLQELSVVKCPKL 295 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~l 295 (498)
++.+++|++|+++++. +. .+|..+. .+++|++|+++++ .+.+..+...+ .++ +|++|++++| .+
T Consensus 121 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~------~l~~L~~L~L~~N-~l~~~~p~~l~-----~l~~~L~~L~L~~N-~l 186 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-LSGTLPPSIS------SLPNLVGITFDGN-RISGAIPDSYG-----SFSKLFTSMTISRN-RL 186 (313)
T ss_dssp GGGCTTCCEEECCSSE-EESCCCGGGG------GCTTCCEEECCSS-CCEEECCGGGG-----CCCTTCCEEECCSS-EE
T ss_pred HhCCCCCCEEeCCCCc-cCCcCChHHh------cCCCCCeEECcCC-cccCcCCHHHh-----hhhhcCcEEECcCC-ee
Confidence 8999999999999864 44 5555444 4899999999887 34432222222 266 8999999988 45
Q ss_pred cccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCccee--cCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322 296 SGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVC--RTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG 373 (498)
Q Consensus 296 ~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l 373 (498)
.+.+|. .+..++ |++|++++|..... .....+++|+.|++++|.+.....
T Consensus 187 ~~~~~~-----------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------- 238 (313)
T 1ogq_A 187 TGKIPP-----------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG---------- 238 (313)
T ss_dssp EEECCG-----------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG----------
T ss_pred eccCCh-----------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC----------
Confidence 446665 233344 88888888765542 223457888888888876542110
Q ss_pred CcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCC
Q 048322 374 SSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFP 444 (498)
Q Consensus 374 ~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp 444 (498)
.+ ..+++|++|++++| .+..+++|+.|+++++. +++ .+|.. ..+++|+.|++.+++.+...|
T Consensus 239 -~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-----~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 239 -KV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCG-----EIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -GC-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEE-----ECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred -cc-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc-ccc-----cCCCC-ccccccChHHhcCCCCccCCC
Confidence 11 23478888888888 24567789999998864 331 12655 789999999999987666544
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=2.7e-15 Score=145.79 Aligned_cols=255 Identities=14% Similarity=0.113 Sum_probs=142.5
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
++|++|+++++....++. .+. .+++|++|++++|. +..+ |. ++.+++|++|+++++ .++.+|..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-------- 121 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-------- 121 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC--------
T ss_pred CCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCccc--------
Confidence 455666666555544432 333 35566666665542 3333 22 555666666666553 344444321
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc-ccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS-GKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL 329 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L 329 (498)
+++|++|+++++ .+..+.+.... .+++|++|+++++..-. +..|. .+..+ +|++|
T Consensus 122 ~~~L~~L~l~~n-~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-----------------~~~~l-~L~~L 177 (332)
T 2ft3_A 122 PSSLVELRIHDN-RIRKVPKGVFS-----GLRNMNCIEMGGNPLENSGFEPG-----------------AFDGL-KLNYL 177 (332)
T ss_dssp CTTCCEEECCSS-CCCCCCSGGGS-----SCSSCCEEECCSCCCBGGGSCTT-----------------SSCSC-CCSCC
T ss_pred cccCCEEECCCC-ccCccCHhHhC-----CCccCCEEECCCCccccCCCCcc-----------------cccCC-ccCEE
Confidence 245666665544 22332221111 25566666665552210 01111 23334 77888
Q ss_pred EecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccE
Q 048322 330 EVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILET 401 (498)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~ 401 (498)
++++|....++... +++|+.|++++|.+...... .+ ..+++|+.|++++| .+..+++|+.
T Consensus 178 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~----------~l-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 178 RISEAKLTGIPKDL-PETLNELHLDHNKIQAIELE----------DL-LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp BCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTT----------SS-TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred ECcCCCCCccCccc-cCCCCEEECCCCcCCccCHH----------Hh-cCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 88887765554433 36888888877633221100 01 23478999999998 1345678999
Q ss_pred EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--------cccccceeeccCchhHhhhccCCCC
Q 048322 402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--------PSSLLDLYVNNCPRLKKVCKRDQGK 473 (498)
Q Consensus 402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~i~~c~~l~~~~~~~~~~ 473 (498)
|+++++ .++. +|.++..+++|++|+++++ .++.+|...+ .++|+.|++.++|-...... ..
T Consensus 246 L~L~~N-~l~~------lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~---~~ 314 (332)
T 2ft3_A 246 LHLDNN-KLSR------VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ---PA 314 (332)
T ss_dssp EECCSS-CCCB------CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC---GG
T ss_pred EECCCC-cCee------cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccC---cc
Confidence 999886 4443 3888899999999999985 6777765422 35689999999884321111 11
Q ss_pred CCCCcCCCCeEEEC
Q 048322 474 EWPKIAHIPWVVID 487 (498)
Q Consensus 474 ~~~~i~hi~~~~~~ 487 (498)
.+..+.++..+.+.
T Consensus 315 ~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 315 TFRCVTDRLAIQFG 328 (332)
T ss_dssp GGTTBCCSTTEEC-
T ss_pred cccccchhhhhhcc
Confidence 23345556666554
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=4.5e-15 Score=154.93 Aligned_cols=125 Identities=12% Similarity=0.099 Sum_probs=89.2
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCCCC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPSLG 219 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~ 219 (498)
.+++.|+++.+.-.. .....+..+++|++|+++++....+ |..+. .+++|++|++++| .++.+|..
T Consensus 52 ~~L~~L~Ls~N~i~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISE---------LRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSHN-RLQNISCC- 118 (562)
T ss_dssp TTCCEEECCSSCCCC---------CCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECTTS-CCCEECSC-
T ss_pred CCcCEEECCCCCccc---------cChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEECCCC-cCCccCcc-
Confidence 689999998775211 0124566779999999999987776 55565 5899999999996 57788876
Q ss_pred CccccceeeccccccceecC--ccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCcc--ceeeeccCCC
Q 048322 220 LLSSLKHLAVKGLKKLKSIE--SEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRL--QELSVVKCPK 294 (498)
Q Consensus 220 ~l~~L~~L~l~~~~~l~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L--~~L~l~~c~~ 294 (498)
.+++|++|+++++. +..++ ..+. .+++|++|+++++ .+.... +..+++| ++|++++|..
T Consensus 119 ~l~~L~~L~Ls~N~-l~~l~~p~~~~------~l~~L~~L~L~~n-~l~~~~--------~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 PMASLRHLDLSFND-FDVLPVCKEFG------NLTKLTFLGLSAA-KFRQLD--------LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCTTCSEEECCSSC-CSBCCCCGGGG------GCTTCCEEEEECS-BCCTTT--------TGGGTTSCEEEEEEEESSC
T ss_pred ccccCCEEECCCCC-ccccCchHhhc------ccCcccEEecCCC-ccccCc--------hhhhhhceeeEEEeecccc
Confidence 89999999999864 66654 3333 4899999999875 333211 1114555 8888888743
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=3.2e-16 Score=151.26 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=154.6
Q ss_pred CCCCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322 172 PHKCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
.+++|++|+++++....++ ..+. .+++|++|++++| .+..+++++.+++|++|+++++ .++.++.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~~---------- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNN-YVQELLV---------- 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSS-EEEEEEE----------
T ss_pred cCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCC-ccccccC----------
Confidence 3578899999888877765 4555 5888999999886 4555556888889999999885 4666652
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
.++|++|+++++ .+...... .+++|++|++++| .++ .++. ..+..+++|++|+
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N-~l~-~~~~----------------~~~~~l~~L~~L~ 150 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANN-KIT-MLRD----------------LDEGCRSRVQYLD 150 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSS-CCC-SGGG----------------BCTGGGSSEEEEE
T ss_pred CCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCC-CCC-Cccc----------------hhhhccCCCCEEE
Confidence 578888888876 44444321 1788899999887 443 2221 0334467788888
Q ss_pred ecCCCcceecC--C-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC--CCCCCCeEEecCC-------CCCCCCC
Q 048322 331 VDECKELVCRT--P-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK--PMTTTNVLEFGKL-------LEPGFQI 398 (498)
Q Consensus 331 l~~~~~~~~~~--~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~--~l~~L~~L~i~~~-------~~~~lp~ 398 (498)
+++|....... . ..+++|+.|++++|.+.. +|. .+++|+.|++++| .+..+++
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCcc---------------cccccccccCCEEECCCCcCCcchhhhcccCc
Confidence 88876655321 1 136788888887763322 221 2467788888877 2345677
Q ss_pred ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC-CcCCCC-CccccccceeeccCchhHh
Q 048322 399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL-TLFPEV-GLPSSLLDLYVNNCPRLKK 465 (498)
Q Consensus 399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l-~~lp~~-~~~~sL~~L~i~~c~~l~~ 465 (498)
|+.|+++++ .++.+ |..+..+++|++|++++++.. ..+|.. ...+.|+.|++.+|+.++.
T Consensus 216 L~~L~L~~N-~l~~l------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 216 VTWISLRNN-KLVLI------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CSEEECTTS-CCCEE------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccEEECcCC-cccch------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 888988885 45433 777888899999999987544 233332 2236778888877776653
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=4.7e-15 Score=144.07 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCC
Q 048322 170 LQPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGF 247 (498)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 247 (498)
+..+++|++|+++++....+ |..+. .+++|++|++++| .++.+|. +. ++|++|+++++ .+..++...+.
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~--- 144 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFS--- 144 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGS---
T ss_pred hhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhC---
Confidence 34445666666666555444 33343 3556666666654 3445554 22 55666666553 34444443332
Q ss_pred CCCCCCCceeeccCC
Q 048322 248 SMPFPSLKILRFENL 262 (498)
Q Consensus 248 ~~~~~~L~~L~l~~~ 262 (498)
.+++|+.|+++++
T Consensus 145 --~l~~L~~L~l~~n 157 (332)
T 2ft3_A 145 --GLRNMNCIEMGGN 157 (332)
T ss_dssp --SCSSCCEEECCSC
T ss_pred --CCccCCEEECCCC
Confidence 3556666666554
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.6e-14 Score=138.66 Aligned_cols=232 Identities=18% Similarity=0.162 Sum_probs=110.4
Q ss_pred eEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceec---CccccCCCCCCCCC
Q 048322 178 KVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSI---ESEVYGEGFSMPFP 252 (498)
Q Consensus 178 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i---~~~~~~~~~~~~~~ 252 (498)
.++.++.+...+|..+ .++|++|++++| .++.+|. ++.+++|++|+++++ .+..+ +..+. .++
T Consensus 11 ~l~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~------~~~ 78 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF------GTT 78 (306)
T ss_dssp EEECCSSCCSSCCSCC----CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH------SCS
T ss_pred EEEcCCCCcccCCCCC----CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccc------ccc
Confidence 4444444455555432 235555665554 3445554 455556666665553 23322 12222 255
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|++|+++++ .+..+... +..+++|++|+++++ .++ .++. ...+..+++|++|+++
T Consensus 79 ~L~~L~Ls~n-~i~~l~~~------~~~l~~L~~L~l~~n-~l~-~~~~---------------~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 79 SLKYLDLSFN-GVITMSSN------FLGLEQLEHLDFQHS-NLK-QMSE---------------FSVFLSLRNLIYLDIS 134 (306)
T ss_dssp CCCEEECCSC-SEEEEEEE------EETCTTCCEEECTTS-EEE-SSTT---------------TTTTTTCTTCCEEECT
T ss_pred ccCEEECCCC-ccccChhh------cCCCCCCCEEECCCC-ccc-cccc---------------chhhhhccCCCEEECC
Confidence 5666665554 22222211 111556666666555 222 2221 0023335555555555
Q ss_pred CCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEE
Q 048322 333 ECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETL 402 (498)
Q Consensus 333 ~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L 402 (498)
+|....... ...+++|++|++++|.+.....+ ..-..+++|+.|++++| .+..+++|+.|
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccch----------hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 554433211 22345555555555533210000 00022255666666655 23456667777
Q ss_pred EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
+++++. ++.+. +..+..+++|++|++++|......|.. .++++|+.|++++++
T Consensus 205 ~L~~N~-l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNN-FFSLD-----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSC-CSBCC-----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCc-cCccC-----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 777743 33221 335667778888888876433333332 234578888887754
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=149.22 Aligned_cols=245 Identities=20% Similarity=0.212 Sum_probs=164.5
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHh-hhcCCCCCCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHV-LDILQPHKCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
.+|+.|+++.+.-. .+ .+.+..+++|++|+++++....++ ..+. .+++|++|++++| .++.+|+
T Consensus 52 ~~L~~L~l~~n~i~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNNRIT----------YISNSDLQRCVNLQALVLTSNGINTIEEDSFS--SLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp TTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCSSCCHH
T ss_pred ccCcEEECCCCcCc----------ccCHHHhccCCCCCEEECCCCccCccCHhhcC--CCCCCCEEECCCC-cCCcCCHh
Confidence 47888888766410 11 124566788899999888776654 4455 5788999998885 5667775
Q ss_pred -CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322 218 -LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL 295 (498)
Q Consensus 218 -i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 295 (498)
++.+++|++|+++++ .++.++. ..+ ..+++|++|+++++..+..+.+..... +++|++|++++|. +
T Consensus 119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~-----l~~L~~L~l~~n~-l 186 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGN-PYKTLGETSLF-----SHLTKLQILRVGNMDTFTKIQRKDFAG-----LTFLEELEIDASD-L 186 (353)
T ss_dssp HHTTCTTCSEEECTTC-CCSSSCSSCSC-----TTCTTCCEEEEEESSSCCEECTTTTTT-----CCEEEEEEEEETT-C
T ss_pred HhCCCccCCEEECCCC-CCcccCchhhh-----ccCCCCcEEECCCCccccccCHHHccC-----CCCCCEEECCCCC-c
Confidence 788888999998885 4666665 333 258888888888775555554322222 7888889888873 4
Q ss_pred cccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCC--CCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322 296 SGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTP--IDSKLIKFMTISNSSLDMIGCKGMLYDSQAG 373 (498)
Q Consensus 296 ~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l 373 (498)
.+..|. .+..+++|++|++++|....++.. ..+++|+.|++++|.+.......+
T Consensus 187 ~~~~~~-----------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------- 242 (353)
T 2z80_A 187 QSYEPK-----------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL------- 242 (353)
T ss_dssp CEECTT-----------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------
T ss_pred CccCHH-----------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc-------
Confidence 434444 566688999999999876544322 137899999999885443221111
Q ss_pred CcCCCCCCCCCeEEecCC------------CCCCCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCCCC
Q 048322 374 SSLPKPMTTTNVLEFGKL------------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCPNL 440 (498)
Q Consensus 374 ~~lp~~l~~L~~L~i~~~------------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~~l 440 (498)
.. ....+.++.+++.++ .+..+++|+.|+++++ .++.+ |.++ ..+++|++|++++++-.
T Consensus 243 ~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i------~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 243 ST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSV------PDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC------CTTTTTTCTTCCEEECCSSCBC
T ss_pred cc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCcc------CHHHHhcCCCCCEEEeeCCCcc
Confidence 00 012256777777776 2457889999999986 45443 7774 88999999999998644
Q ss_pred Cc
Q 048322 441 TL 442 (498)
Q Consensus 441 ~~ 442 (498)
..
T Consensus 315 ~~ 316 (353)
T 2z80_A 315 CS 316 (353)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=6.1e-16 Score=158.14 Aligned_cols=235 Identities=10% Similarity=0.050 Sum_probs=155.0
Q ss_pred HHHhhhcCCCCCCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCcc
Q 048322 163 EEHVLDILQPHKCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESE 241 (498)
Q Consensus 163 ~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~ 241 (498)
...+......+++|++|+++++....+| ..+. .+++|++|+|++|. +...++++.+++|++|++++| .++.++.
T Consensus 23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~- 97 (487)
T 3oja_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV- 97 (487)
T ss_dssp HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSS-EEEEEEE-
T ss_pred HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCC-cCCCCCC-
Confidence 3344444455679999999999887775 4566 68999999999864 555556899999999999986 5776663
Q ss_pred ccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCC
Q 048322 242 VYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLS 321 (498)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~ 321 (498)
.++|+.|+++++ .+....+. .+++|+.|++++| .+++..|. .+.
T Consensus 98 ---------~~~L~~L~L~~N-~l~~~~~~--------~l~~L~~L~L~~N-~l~~~~~~-----------------~~~ 141 (487)
T 3oja_A 98 ---------GPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANN-KITMLRDL-----------------DEG 141 (487)
T ss_dssp ---------CTTCCEEECCSS-CCCCEEEC--------CCSSCEEEECCSS-CCCSGGGB-----------------CGG
T ss_pred ---------CCCcCEEECcCC-cCCCCCcc--------ccCCCCEEECCCC-CCCCCCch-----------------hhc
Confidence 579999999887 44444321 1789999999988 44423332 334
Q ss_pred CCccccEEEecCCCcceec-C-CC-CCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------
Q 048322 322 SYPRLCRLEVDECKELVCR-T-PI-DSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------- 391 (498)
Q Consensus 322 ~l~~L~~L~l~~~~~~~~~-~-~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------- 391 (498)
.+++|+.|++++|...... . .. .+++|+.|++++|.+..... . ..+++|+.|++++|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------------~-~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG------------Q-VVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC------------C-CCCTTCCEEECCSSCCCEECG
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc------------c-ccCCCCCEEECCCCCCCCCCH
Confidence 4678888888888765532 2 22 36788888888774332110 0 12467777777777
Q ss_pred CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC-CcCCCC-Cccccccceeec
Q 048322 392 LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL-TLFPEV-GLPSSLLDLYVN 458 (498)
Q Consensus 392 ~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l-~~lp~~-~~~~sL~~L~i~ 458 (498)
.+..+++|+.|+++++ .++.+ |.++..+++|+.|++++|+.. ..+|.. ...+.|+.+.+.
T Consensus 209 ~~~~l~~L~~L~Ls~N-~l~~l------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNN-KLVLI------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTS-CCCEE------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCC-cCccc------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 2334566888888774 34433 777778888888888886544 233321 223445555554
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=9.5e-15 Score=152.67 Aligned_cols=238 Identities=17% Similarity=0.194 Sum_probs=140.7
Q ss_pred hcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCC
Q 048322 168 DILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGF 247 (498)
Q Consensus 168 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 247 (498)
+.+..+++|+.|+++++....+|.++. .+ +|++|++++| .+..+|. +.+++|+.|++.++.....++.
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n-~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~------- 343 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGGNAFSE------- 343 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESC-BCSSCCB-CBCSSCCEEEEESCBSCCBCCC-------
T ss_pred hhhcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccC-cccccCc-ccccccCEEeCcCCcccccccc-------
Confidence 334456778888888877777787776 35 7888888876 3446665 5677888888877653322221
Q ss_pred CCCCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCcc
Q 048322 248 SMPFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPR 325 (498)
Q Consensus 248 ~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~ 325 (498)
..+++|+.|+++++ .+.... +.. +..+++|++|++++|. +. .+|. .+..+++
T Consensus 344 -~~~~~L~~L~l~~n-~l~~~~~~~~~-----~~~~~~L~~L~l~~n~-l~-~~~~-----------------~~~~l~~ 397 (570)
T 2z63_A 344 -VDLPSLEFLDLSRN-GLSFKGCCSQS-----DFGTTSLKYLDLSFNG-VI-TMSS-----------------NFLGLEQ 397 (570)
T ss_dssp -CBCTTCCEEECCSS-CCBEEEEEEHH-----HHTCSCCCEEECCSCS-EE-EEEE-----------------EEETCTT
T ss_pred -ccCCCCCEEeCcCC-ccCcccccccc-----ccccCccCEEECCCCc-cc-cccc-----------------cccccCC
Confidence 24778888888766 233221 111 1227788888887773 33 2332 2334566
Q ss_pred ccEEEecCCCcceec---CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC---------CC
Q 048322 326 LCRLEVDECKELVCR---TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL---------LE 393 (498)
Q Consensus 326 L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~---------~~ 393 (498)
|++|++++|...... ....+++|++|++++|.+..... ..-..+++|+.|++++| .+
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----------GIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-----------TTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-----------hhhhcCCcCcEEECcCCcCccccchhhh
Confidence 667777666544322 22346667777776653322110 00123366777777766 24
Q ss_pred CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 394 PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 394 ~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
..+++|+.|++++|. ++.+ .|..+..+++|++|++++| .++.+|.. ...++|+.|+++++|
T Consensus 467 ~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 467 TELRNLTFLDLSQCQ-LEQL-----SPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCc-cccC-----ChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 456677777777754 3221 1566777778888888775 55666543 234677778777644
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=1.6e-14 Score=152.85 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=84.3
Q ss_pred hHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCC
Q 048322 132 AREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCN 210 (498)
Q Consensus 132 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~ 210 (498)
.....+.++++|++|+|+++.- .... ...+..+++|++|++++|....+|. ++. .+++|++|++++|
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i------~~i~---~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~--~L~~L~~L~Ls~N- 134 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEI------QTIE---DGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVET- 134 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCC------CEEC---TTTTTTCTTCCEEECTTCCCCEECGGGGT--TCTTCCEEECTTS-
T ss_pred CCHHHHhCCCCCCEEECCCCcC------CCcC---hhHhcCCCCCCEEEccCCcCCCCCHHHhc--CCCCCCEEECCCC-
Confidence 3445678899999999987741 1111 1235566899999999999888875 455 5899999999996
Q ss_pred CCCCCCC--CCCccccceeeccccccceec--CccccCCCCCCCCCCCceeeccCCCcccc
Q 048322 211 NCVSLPS--LGLLSSLKHLAVKGLKKLKSI--ESEVYGEGFSMPFPSLKILRFENLPEWWH 267 (498)
Q Consensus 211 ~~~~lp~--i~~l~~L~~L~l~~~~~l~~i--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 267 (498)
.++.+|+ ++.+++|++|+++++ .+..+ |..+. .+++|++|+++++ .++.
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~------~l~~L~~L~L~~N-~l~~ 187 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFS------NLTNLEHLDLSSN-KIQS 187 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGG------GCTTCCEEECCSS-CCCE
T ss_pred cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhc------cchhhhhhcccCc-cccc
Confidence 5777775 899999999999985 35443 33222 4889999999876 3443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=1.6e-14 Score=138.68 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=147.6
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC---CC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL---PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l---p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
++|++|+++++....+|..+.. .+++|++|++++| .+..+ |. +..+++|++|+++++ .+..++..+.+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~----- 99 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG----- 99 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEET-----
T ss_pred CCCCEEECCCCccCccCHhHhh-ccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcCC-----
Confidence 6889999999888888876422 5889999999886 44433 33 556889999999885 47777765543
Q ss_pred CCCCCceeeccCCCccccccc-cccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccE
Q 048322 250 PFPSLKILRFENLPEWWHWDT-DIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCR 328 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~ 328 (498)
+++|++|+++++ .++.+.. .. +..+++|++|++++|. +.+..|. .+..+++|++
T Consensus 100 -l~~L~~L~l~~n-~l~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~-----------------~~~~l~~L~~ 154 (306)
T 2z66_A 100 -LEQLEHLDFQHS-NLKQMSEFSV-----FLSLRNLIYLDISHTH-TRVAFNG-----------------IFNGLSSLEV 154 (306)
T ss_dssp -CTTCCEEECTTS-EEESSTTTTT-----TTTCTTCCEEECTTSC-CEECSTT-----------------TTTTCTTCCE
T ss_pred -CCCCCEEECCCC-cccccccchh-----hhhccCCCEEECCCCc-CCccchh-----------------hcccCcCCCE
Confidence 889999999876 3444331 22 2338899999999884 4323333 4556778888
Q ss_pred EEecCCCcce--ec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCC
Q 048322 329 LEVDECKELV--CR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQ 397 (498)
Q Consensus 329 L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp 397 (498)
|++++|.... .+ ....+++|+.|++++|.+...... .+ ..+++|+.|++++| .+..++
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT----------AF-NSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT----------TT-TTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH----------Hh-cCCCCCCEEECCCCccCccChhhccCcc
Confidence 8888886543 23 344578888888887743321110 00 23478888888888 245678
Q ss_pred CccEEEEcCCCCCCCccccCCCCccCCCC-CCcCeEeeecCCC
Q 048322 398 ILETLVIGNSEQLKPWRQGRGLSMGFQRL-TSLQSLKIWNCPN 439 (498)
Q Consensus 398 ~L~~L~l~~c~~L~~l~~l~~l~~~l~~l-~~L~~L~l~~c~~ 439 (498)
+|+.|+++++. ++.. .|..+..+ ++|++|++++++-
T Consensus 224 ~L~~L~L~~N~-l~~~-----~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 224 SLQVLDYSLNH-IMTS-----KKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTSC-CCBC-----SSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCEeECCCCC-Cccc-----CHHHHHhhhccCCEEEccCCCe
Confidence 89999999864 4321 26677777 4999999998753
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=7.2e-14 Score=132.57 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=76.4
Q ss_pred ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
+.++.++.+...+|..+ .++|++|+++++ .++.+|+ ++.+++|++|+++++ .++.++...+. .+++|
T Consensus 14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFT-----GLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCTTC
T ss_pred eEEEcCcCCcccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcC-----CccCC
Confidence 45555555555555432 346666666664 3444443 666666777766664 35555332222 36666
Q ss_pred ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322 255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC 334 (498)
Q Consensus 255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~ 334 (498)
++|+++++..+..+.+..... +++|++|++++| .+.+..|. .+..+++|++|++++|
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~~-----------------~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRC-GLQELGPG-----------------LFRGLAALQYLYLQDN 139 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTT-----CTTCCEEECTTS-CCCCCCTT-----------------TTTTCTTCCEEECCSS
T ss_pred CEEeCCCCCCccccCHHHhcC-----CcCCCEEECCCC-cCCEECHh-----------------HhhCCcCCCEEECCCC
Confidence 666666654344433222222 666667766666 23312222 3444566666666666
Q ss_pred CcceecC--CCCCCCccEEEEecc
Q 048322 335 KELVCRT--PIDSKLIKFMTISNS 356 (498)
Q Consensus 335 ~~~~~~~--~~~~~~L~~L~l~~~ 356 (498)
....++. ...+++|+.|++++|
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 140 ALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccCHhHhccCCCccEEECCCC
Confidence 5444332 223556666666554
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=9.8e-14 Score=128.02 Aligned_cols=201 Identities=16% Similarity=0.143 Sum_probs=110.4
Q ss_pred CccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322 200 KIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH 277 (498)
Q Consensus 200 ~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 277 (498)
+|++|++++| .++.+|+ ++.+++|++|+++++..++.++...+. .+++|++|+++++..++.+.++....
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-----~l~~L~~L~l~~~n~l~~i~~~~f~~-- 103 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-----NLSKVTHIEIRNTRNLTYIDPDALKE-- 103 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-----SCTTCCEEEEEEETTCCEECTTSEEC--
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-----CCcCCcEEECCCCCCeeEcCHHHhCC--
Confidence 5666666664 3455543 556666666666665445555553332 35666666665533444443222222
Q ss_pred ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC-CcceecC--CCCCCCcc-EEEE
Q 048322 278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC-KELVCRT--PIDSKLIK-FMTI 353 (498)
Q Consensus 278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~~~~L~-~L~l 353 (498)
+++|++|++++| .++ .+|. +. .++.+..|++|++++| ....++. ...+++|+ .|++
T Consensus 104 ---l~~L~~L~l~~n-~l~-~lp~-~~--------------~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 104 ---LPLLKFLGIFNT-GLK-MFPD-LT--------------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp ---CTTCCEEEEEEE-CCC-SCCC-CT--------------TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ---CCCCCEEeCCCC-CCc-cccc-cc--------------cccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 667777777766 343 3442 11 1222222337777766 4333332 22355666 6666
Q ss_pred eccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCC-CCcCeE
Q 048322 354 SNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRL-TSLQSL 432 (498)
Q Consensus 354 ~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l-~~L~~L 432 (498)
++| .+..+|... .. .++|+.|+++++..++.+. +..+..+ ++|++|
T Consensus 164 ~~n---------------~l~~i~~~~------------~~-~~~L~~L~L~~n~~l~~i~-----~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 164 YNN---------------GFTSVQGYA------------FN-GTKLDAVYLNKNKYLTVID-----KDAFGGVYSGPSLL 210 (239)
T ss_dssp CSC---------------CCCEECTTT------------TT-TCEEEEEECTTCTTCCEEC-----TTTTTTCSBCCSEE
T ss_pred CCC---------------CCcccCHhh------------cC-CCCCCEEEcCCCCCcccCC-----HHHhhccccCCcEE
Confidence 554 222222211 11 1457788887765565431 4457778 899999
Q ss_pred eeecCCCCCcCCCCCccccccceeeccCchh
Q 048322 433 KIWNCPNLTLFPEVGLPSSLLDLYVNNCPRL 463 (498)
Q Consensus 433 ~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l 463 (498)
++++ +.++.+|.. .+++|+.|++.++..|
T Consensus 211 ~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 211 DVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred ECCC-CccccCChh-HhccCceeeccCccCC
Confidence 9988 477888875 4578999999888653
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=1.9e-16 Score=152.92 Aligned_cols=244 Identities=14% Similarity=0.024 Sum_probs=173.2
Q ss_pred HhHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCC
Q 048322 131 NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCN 210 (498)
Q Consensus 131 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~ 210 (498)
+....-....++|+.|+|+++.-.. . ....+..+++|++|+++++.....+. +. .+++|++|++++|
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~------~---~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~--~l~~L~~L~Ls~n- 90 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQ------I---SAADLAPFTKLELLNLSSNVLYETLD-LE--SLSTLRTLDLNNN- 90 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCC------C---CHHHHTTCTTCCEEECTTSCCEEEEE-ET--TCTTCCEEECCSS-
T ss_pred hhHHHHhccCCCCCEEECcCCccCc------C---CHHHhhCCCcCCEEECCCCcCCcchh-hh--hcCCCCEEECcCC-
Confidence 3344444567799999998875211 1 12334566999999999998766655 44 5899999999996
Q ss_pred CCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeec
Q 048322 211 NCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVV 290 (498)
Q Consensus 211 ~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (498)
.++.+| ..++|++|+++++ .+..++.. .+++|++|+++++ .++...+...+ .+++|++|+++
T Consensus 91 ~l~~l~---~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~Ls 152 (317)
T 3o53_A 91 YVQELL---VGPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANN-KITMLRDLDEG-----CRSRVQYLDLK 152 (317)
T ss_dssp EEEEEE---ECTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSS-CCCSGGGBCTG-----GGSSEEEEECT
T ss_pred cccccc---CCCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCC-CCCCccchhhh-----ccCCCCEEECC
Confidence 455544 4489999999985 46666532 4789999999887 45554432222 28999999999
Q ss_pred cCCCccccCCCCcchHHHHHHhcccccccC-CCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccC
Q 048322 291 KCPKLSGKLPELLPSLEILVSKCEKLVVSL-SSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYD 369 (498)
Q Consensus 291 ~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 369 (498)
+| .+.+..|. .+ ..+++|++|++++|....++....+++|+.|++++|.+
T Consensus 153 ~N-~l~~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l----------- 203 (317)
T 3o53_A 153 LN-EIDTVNFA-----------------ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL----------- 203 (317)
T ss_dssp TS-CCCEEEGG-----------------GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCC-----------
T ss_pred CC-CCCcccHH-----------------HHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcC-----------
Confidence 98 44322222 22 24789999999999888777777799999999998733
Q ss_pred CCCCCcCCC---CCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322 370 SQAGSSLPK---PMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN 439 (498)
Q Consensus 370 ~~~l~~lp~---~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~ 439 (498)
..+|. .+++|+.|++++| .+..+++|+.|++++++-... .+|.++..+++|+.|++.+|+.
T Consensus 204 ----~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~-----~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 204 ----AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp ----CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH-----HHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc-----CHHHHHhccccceEEECCCchh
Confidence 33333 2378999999999 355677899999998653311 1267778889999999987766
Q ss_pred CCcC
Q 048322 440 LTLF 443 (498)
Q Consensus 440 l~~l 443 (498)
++..
T Consensus 275 l~~~ 278 (317)
T 3o53_A 275 LTGQ 278 (317)
T ss_dssp HHSS
T ss_pred ccCC
Confidence 5544
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=4.2e-13 Score=127.24 Aligned_cols=206 Identities=17% Similarity=0.271 Sum_probs=152.6
Q ss_pred cEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCC
Q 048322 202 EFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIF 281 (498)
Q Consensus 202 ~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 281 (498)
+.++.++ ..++.+|. +..++|++|+++++ .++.++...+. .+++|++|+++++ .++.+.+..... +
T Consensus 14 ~~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~-----~~~~L~~L~l~~n-~l~~~~~~~~~~-----l 79 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFR-----ACRNLTILWLHSN-VLARIDAAAFTG-----L 79 (285)
T ss_dssp CEEECCS-SCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTT-----TCTTCCEEECCSS-CCCEECTTTTTT-----C
T ss_pred eEEEcCc-CCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcc-----cCCCCCEEECCCC-ccceeCHhhcCC-----c
Confidence 4666665 46777775 33579999999985 57888765443 5899999999887 455554332233 8
Q ss_pred CccceeeeccCCCccccC-CCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEeccEe
Q 048322 282 PRLQELSVVKCPKLSGKL-PELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSL 358 (498)
Q Consensus 282 ~~L~~L~l~~c~~l~~~l-p~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l 358 (498)
++|++|++++|..+. .+ |. .+..+++|++|++++|.....+. ...+++|++|++++|.+
T Consensus 80 ~~L~~L~l~~n~~l~-~~~~~-----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLR-SVDPA-----------------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp TTCCEEECCSCTTCC-CCCTT-----------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCEEeCCCCCCcc-ccCHH-----------------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence 999999999986565 44 33 56678999999999998766532 34589999999998733
Q ss_pred eeecCCCCccCCCCCCcCC----CCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCC
Q 048322 359 DMIGCKGMLYDSQAGSSLP----KPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRL 426 (498)
Q Consensus 359 ~~~~~~~l~~~~~~l~~lp----~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l 426 (498)
..++ ..+++|+.|++++| .+..+++|+.|+++++. ++.+ .|..+..+
T Consensus 142 ---------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l 200 (285)
T 1ozn_A 142 ---------------QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHV-----HPHAFRDL 200 (285)
T ss_dssp ---------------CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEE-----CTTTTTTC
T ss_pred ---------------cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-cccc-----CHhHccCc
Confidence 3333 23488999999998 25667889999999964 4322 27788899
Q ss_pred CCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322 427 TSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP 461 (498)
Q Consensus 427 ~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 461 (498)
++|++|++++| .+..+|.. ...++|+.|+++++|
T Consensus 201 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 99999999996 67777643 345789999998875
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=4.7e-14 Score=144.18 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=160.9
Q ss_pred EeecCCCCCCccccC--CCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCce
Q 048322 181 IRNYGGARFPLWIGD--PLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKI 256 (498)
Q Consensus 181 l~~~~~~~~p~~~~~--~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~ 256 (498)
++......+|..+.. ..+++|++|+|++| .+..+|+ ++.+++|++|++++|. +..++. + ..+++|++
T Consensus 14 ~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l------~~l~~L~~ 84 (487)
T 3oja_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-L------ESLSTLRT 84 (487)
T ss_dssp EESCCTTTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-C------TTCTTCCE
T ss_pred cccCchhhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-c------ccCCCCCE
Confidence 333344455655542 13458999999997 5566653 9999999999999964 555443 2 35999999
Q ss_pred eeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCc
Q 048322 257 LRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKE 336 (498)
Q Consensus 257 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~ 336 (498)
|+++++ .+..+.+ .++|++|++++| .+. .+|. ..+++|+.|++++|..
T Consensus 85 L~Ls~N-~l~~l~~----------~~~L~~L~L~~N-~l~-~~~~-------------------~~l~~L~~L~L~~N~l 132 (487)
T 3oja_A 85 LDLNNN-YVQELLV----------GPSIETLHAANN-NIS-RVSC-------------------SRGQGKKNIYLANNKI 132 (487)
T ss_dssp EECCSS-EEEEEEE----------CTTCCEEECCSS-CCC-CEEE-------------------CCCSSCEEEECCSSCC
T ss_pred EEecCC-cCCCCCC----------CCCcCEEECcCC-cCC-CCCc-------------------cccCCCCEEECCCCCC
Confidence 999987 4444432 589999999998 443 2221 2367899999999987
Q ss_pred ceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------CCCCCCCccEEEEcCCC
Q 048322 337 LVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------LEPGFQILETLVIGNSE 408 (498)
Q Consensus 337 ~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~ 408 (498)
.... ....+++|+.|++++|.+...... .+...+++|+.|++++| ....+++|+.|+++++
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N- 201 (487)
T 3oja_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFA----------ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN- 201 (487)
T ss_dssp CSGGGBCGGGGSSEEEEECTTSCCCEEEGG----------GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-
T ss_pred CCCCchhhcCCCCCCEEECCCCCCCCcChH----------HHhhhCCcccEEecCCCccccccccccCCCCCEEECCCC-
Confidence 6643 234489999999999855432211 12224589999999999 3456888999999985
Q ss_pred CCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCchh
Q 048322 409 QLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPRL 463 (498)
Q Consensus 409 ~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l 463 (498)
.++.+ |..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+-.
T Consensus 202 ~l~~~------~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 202 KLAFM------GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEE------CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCC------CHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 45443 777889999999999995 67788875 45689999999987643
No 65
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=1.6e-15 Score=121.44 Aligned_cols=46 Identities=33% Similarity=0.483 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 048322 1 MIQAVLSDAEEK--RLTDEAVKMWLDELQDLAYDAEDILDGFGTQALE 46 (498)
Q Consensus 1 ~i~a~L~da~~~--~~~~~~~~~Wl~~lrd~~yd~eDvlD~~~~~~~~ 46 (498)
+|+|||.||+++ +..|++++.|++||||+||||||+||+|.|++.+
T Consensus 37 ~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 37 SMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999998 5689999999999999999999999999999854
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.1e-12 Score=123.31 Aligned_cols=196 Identities=20% Similarity=0.222 Sum_probs=116.9
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
+.+.+++++++...+|..+. ++|++|++++| .+..+|+ ++.+++|++|+++++ .++.++...+. .++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~-----~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFK-----ELK 85 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC----TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTS-----SCT
T ss_pred CCCEEEccCCCCCccCCCCC----CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhc-----CCC
Confidence 56778888877777776543 56888888885 4666664 778888888888874 46666665443 477
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|++|+++++ .++.+.+..... +++|++|+++++ .++ .+|.. .+..+++|++|+++
T Consensus 86 ~L~~L~l~~n-~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~-~~~~~----------------~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 86 NLETLWVTDN-KLQALPIGVFDQ-----LVNLAELRLDRN-QLK-SLPPR----------------VFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTT-----CSSCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECC
T ss_pred CCCEEECCCC-cCCcCCHhHccc-----ccCCCEEECCCC-ccC-eeCHH----------------HhCcCcCCCEEECC
Confidence 7788877765 344433222222 677788877776 343 33321 34456777777777
Q ss_pred CCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCC
Q 048322 333 ECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQL 410 (498)
Q Consensus 333 ~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L 410 (498)
+|....++. ...+++|+.|++++| .+..+|.. .+..+++|+.|+++++ .+
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n---------------~l~~~~~~------------~~~~l~~L~~L~L~~N-~l 193 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNN---------------QLKRVPEG------------AFDKLTELKTLKLDNN-QL 193 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS---------------CCSCCCTT------------TTTTCTTCCEEECCSS-CC
T ss_pred CCcCCccCHhHccCCcccceeEecCC---------------cCcEeChh------------HhccCCCcCEEECCCC-cC
Confidence 765544332 223556666666554 22222211 1234555666666664 34
Q ss_pred CCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 411 KPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 411 ~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
+.+. +..+..+++|+.|++++++
T Consensus 194 ~~~~-----~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVP-----EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCC-----TTTTTTCTTCCEEECCSSC
T ss_pred CcCC-----HHHhccccCCCEEEecCCC
Confidence 3321 2346667778888887765
No 67
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=7.5e-13 Score=129.41 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=117.3
Q ss_pred CCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++++|+++++....+|.. +. .+++|++|+|++|...+.+|. +..+++|+++.+.+++.+..++.+.+. .
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~-----~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----N 102 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC-----C
T ss_pred CCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh-----h
Confidence 5677777777766666653 33 466777777777655555554 566666666555555666666655443 4
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCC-ccccEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSY-PRLCRL 329 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l-~~L~~L 329 (498)
+++|++|+++++ .+........ ....++..|++.++..+. .+|.. .+..+ ..++.|
T Consensus 103 l~~L~~L~l~~n-~l~~~~~~~~-----~~~~~l~~l~l~~~~~i~-~l~~~----------------~f~~~~~~l~~L 159 (350)
T 4ay9_X 103 LPNLQYLLISNT-GIKHLPDVHK-----IHSLQKVLLDIQDNINIH-TIERN----------------SFVGLSFESVIL 159 (350)
T ss_dssp CTTCCEEEEEEE-CCSSCCCCTT-----CCBSSCEEEEEESCTTCC-EECTT----------------SSTTSBSSCEEE
T ss_pred cccccccccccc-ccccCCchhh-----cccchhhhhhhccccccc-ccccc----------------chhhcchhhhhh
Confidence 666777776654 2333321111 113445566666555553 33321 22332 457778
Q ss_pred EecCCCcceecC-CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCC----CCCCCeEEecCC-----CCCCCCCc
Q 048322 330 EVDECKELVCRT-PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKP----MTTTNVLEFGKL-----LEPGFQIL 399 (498)
Q Consensus 330 ~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~----l~~L~~L~i~~~-----~~~~lp~L 399 (498)
++++|....++. .+...+|+.|.+.+ ++.++.+|.. +++|+.|++++| +...+..|
T Consensus 160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~--------------~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L 225 (350)
T 4ay9_X 160 WLNKNGIQEIHNSAFNGTQLDELNLSD--------------NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225 (350)
T ss_dssp ECCSSCCCEECTTSSTTEEEEEEECTT--------------CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred ccccccccCCChhhccccchhHHhhcc--------------CCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence 888777666543 23355677777643 3455666542 256666777666 22334446
Q ss_pred cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeee
Q 048322 400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIW 435 (498)
Q Consensus 400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~ 435 (498)
+.|.+.++.+++.+ | .+..+++|+.+++.
T Consensus 226 ~~L~~l~~~~l~~l------P-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 226 KKLRARSTYNLKKL------P-TLEKLVALMEASLT 254 (350)
T ss_dssp CEEECTTCTTCCCC------C-CTTTCCSCCEEECS
T ss_pred hHhhhccCCCcCcC------C-CchhCcChhhCcCC
Confidence 66666666555543 4 24556666666654
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=2.6e-13 Score=125.12 Aligned_cols=199 Identities=13% Similarity=0.103 Sum_probs=137.6
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
.+|++|+++++....+|. .+. .+++|++|++++|..++.+|+ ++.+++|++|++++|+.++.++...+. .
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-----~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-----E 103 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-----C
T ss_pred CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-----C
Confidence 589999999998887776 444 589999999999765788875 788999999999987788888876554 4
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccc---eeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCcccc
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQ---ELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLC 327 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~ 327 (498)
+++|++|+++++ .++.+.. +..+++|+ .|++++|+.++ .+|.. .+..+++|+
T Consensus 104 l~~L~~L~l~~n-~l~~lp~-------~~~l~~L~~L~~L~l~~N~~l~-~i~~~----------------~~~~l~~L~ 158 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLKMFPD-------LTKVYSTDIFFILEITDNPYMT-SIPVN----------------AFQGLCNET 158 (239)
T ss_dssp CTTCCEEEEEEE-CCCSCCC-------CTTCCBCCSEEEEEEESCTTCC-EECTT----------------TTTTTBSSE
T ss_pred CCCCCEEeCCCC-CCccccc-------cccccccccccEEECCCCcchh-hcCcc----------------cccchhcce
Confidence 889999999876 3444331 12266776 99999986675 55531 466688999
Q ss_pred -EEEecCCCcceecCC-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCC-CCccEEEE
Q 048322 328 -RLEVDECKELVCRTP-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGF-QILETLVI 404 (498)
Q Consensus 328 -~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~l-p~L~~L~l 404 (498)
+|++++|....++.. ...++|+.|++++| ..++.+|.. .+.++ ++|+.|++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n--------------~~l~~i~~~------------~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN--------------KYLTVIDKD------------AFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTTC--------------TTCCEECTT------------TTTTCSBCCSEEEC
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCCC--------------CCcccCCHH------------HhhccccCCcEEEC
Confidence 999999877665542 23478999998765 113333221 12344 56667777
Q ss_pred cCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322 405 GNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN 439 (498)
Q Consensus 405 ~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~ 439 (498)
++ +.++.+ |.. .+++|+.|.+.++..
T Consensus 213 ~~-N~l~~l------~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 213 SQ-TSVTAL------PSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TT-CCCCCC------CCT--TCTTCSEEECTTC--
T ss_pred CC-CccccC------Chh--HhccCceeeccCccC
Confidence 66 334332 443 567788888777654
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.2e-12 Score=128.00 Aligned_cols=226 Identities=14% Similarity=0.168 Sum_probs=159.8
Q ss_pred ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
+.++.++.+.+.+|..+ .+++++|+|++| .++.+|+ ++.+++|++|+|+++.-++.++...+. .+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-----~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-----NLPKL 81 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-----SCTTC
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-----cchhh
Confidence 56778888888888765 368999999995 6888886 889999999999997766778776554 47787
Q ss_pred ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322 255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC 334 (498)
Q Consensus 255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~ 334 (498)
.++.+.++..+..+.++.... +++|++|+++++ .+. .+|.. .+....++..|++.++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~-----l~~L~~L~l~~n-~l~-~~~~~----------------~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQN-----LPNLQYLLISNT-GIK-HLPDV----------------HKIHSLQKVLLDIQDN 138 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCC-----CTTCCEEEEEEE-CCS-SCCCC----------------TTCCBSSCEEEEEESC
T ss_pred hhhhcccCCcccccCchhhhh-----cccccccccccc-ccc-cCCch----------------hhcccchhhhhhhccc
Confidence 776666555677665444333 899999999988 454 44431 2233556778888765
Q ss_pred Ccce-ecCC--CC-CCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCC---------CCCCCCC
Q 048322 335 KELV-CRTP--ID-SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKL---------LEPGFQI 398 (498)
Q Consensus 335 ~~~~-~~~~--~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~---------~~~~lp~ 398 (498)
..+. ++.. .. ...++.|++++| .++.+|... .+|+.|.+.++ .+.++++
T Consensus 139 ~~i~~l~~~~f~~~~~~l~~L~L~~N---------------~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 139 INIHTIERNSFVGLSFESVILWLNKN---------------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp TTCCEECTTSSTTSBSSCEEEECCSS---------------CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred cccccccccchhhcchhhhhhccccc---------------cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 5443 3321 22 346888998876 444555433 56888888764 2355677
Q ss_pred ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeecc
Q 048322 399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNN 459 (498)
Q Consensus 399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~ 459 (498)
|+.|+++++ .++.+ |.+ .+.+|+.|.+.+|..++.+|....+++|+.+++.+
T Consensus 204 L~~LdLs~N-~l~~l------p~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISRT-RIHSL------PSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTTS-CCCCC------CSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cchhhcCCC-CcCcc------Chh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 999999885 56543 653 46788888888999999999765568888888854
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=2.4e-13 Score=128.05 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
.+|+.|.+.++....++. +. .+++|++|++++| .+..++.++.+++|++|++++| .++.++...++ .+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~-l~--~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~ 110 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG-IQ--YLPNVRYLALGGN-KLHDISALKELTNLTYLILTGN-QLQSLPNGVFD-----KLTN 110 (272)
T ss_dssp TTCCEEECTTSCCCCCTT-GG--GCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTT-----TCTT
T ss_pred cceeeeeeCCCCcccccc-cc--cCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCccChhHhc-----CCcC
Confidence 455555555555444433 22 3556666666654 3444444556666666666554 34444443322 3555
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE 333 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~ 333 (498)
|++|+++++ .++.+.+...+. +++|++|++++| .++ .+|.. .+..+++|++|++++
T Consensus 111 L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~-~~~~~----------------~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 111 LKELVLVEN-QLQSLPDGVFDK-----LTNLTYLNLAHN-QLQ-SLPKG----------------VFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECCS
T ss_pred CCEEECCCC-cCCccCHHHhcc-----CCCCCEEECCCC-ccC-ccCHH----------------HhccCccCCEEECCC
Confidence 666665554 233332221112 566666666665 343 33320 234456666666666
Q ss_pred CCcceecC--CCCCCCccEEEEecc
Q 048322 334 CKELVCRT--PIDSKLIKFMTISNS 356 (498)
Q Consensus 334 ~~~~~~~~--~~~~~~L~~L~l~~~ 356 (498)
|....++. ...+++|+.|++++|
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCccCHHHhcCCccCCEEECCCC
Confidence 65444332 223556666666554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=1.4e-14 Score=139.36 Aligned_cols=206 Identities=19% Similarity=0.199 Sum_probs=106.4
Q ss_pred CCCccEEeEeCCCCCCCCCC-C--CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccC
Q 048322 198 FSKIEFLELENCNNCVSLPS-L--GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKG 274 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~-i--~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 274 (498)
+++|++|++++|.....+|. + +.+++|++|+++++ .+..+|..+..- ....+++|++|+++++ .+....+...+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l-~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL-QQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH-HTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH-HHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 67888888888754446665 4 77888888888874 355554322210 0001267777777665 33333322222
Q ss_pred CccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCC-----CCCCCcc
Q 048322 275 NVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTP-----IDSKLIK 349 (498)
Q Consensus 275 ~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~ 349 (498)
. +++|++|++++|.. .+.++ ++. ...+..+++|++|++++|....++.. ..+++|+
T Consensus 171 ~-----l~~L~~L~Ls~N~l-~~~~~--------~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 171 V-----FPALSTLDLSDNPE-LGERG--------LIS-----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp C-----CSSCCEEECCSCTT-CHHHH--------HHH-----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred c-----CCCCCEEECCCCCc-CcchH--------HHH-----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 2 66777777766632 11100 000 00123456677777776654422111 1245666
Q ss_pred EEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCc
Q 048322 350 FMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSL 429 (498)
Q Consensus 350 ~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L 429 (498)
.|++++|.+.... |.. ....+++|+.|+++++. ++. +|.++. ++|
T Consensus 232 ~L~Ls~N~l~~~~--------------~~~------------~~~~l~~L~~L~Ls~N~-l~~------ip~~~~--~~L 276 (312)
T 1wwl_A 232 GLDLSHNSLRDAA--------------GAP------------SCDWPSQLNSLNLSFTG-LKQ------VPKGLP--AKL 276 (312)
T ss_dssp EEECTTSCCCSSC--------------CCS------------CCCCCTTCCEEECTTSC-CSS------CCSSCC--SEE
T ss_pred EEECCCCcCCccc--------------chh------------hhhhcCCCCEEECCCCc-cCh------hhhhcc--CCc
Confidence 6666554221100 000 01223456666666632 332 255554 677
Q ss_pred CeEeeecCCCCCcCCCCCccccccceeeccCc
Q 048322 430 QSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 430 ~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 461 (498)
++|+++++ .++.+|.....++|++|++++++
T Consensus 277 ~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 277 SVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred eEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 77777774 56666654444677777777654
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=1.4e-12 Score=137.88 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=95.5
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHh-hhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHV-LDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
.++++|+|+++.- . .+ ...+..+++|++|++++|....+|.. +. .+++|++|+|++| .++.+|+
T Consensus 52 ~~~~~LdLs~N~i------~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N-~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPL------R----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGN-PIQSLALG 118 (635)
T ss_dssp TTCCEEECTTSCC------C----EECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTC-CCCEECGG
T ss_pred cCCCEEEeeCCCC------C----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCC-cCCCCCHH
Confidence 4789999988751 1 11 13456679999999999998887654 55 5899999999996 5788885
Q ss_pred -CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccC
Q 048322 218 -LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 218 -i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
++.+++|++|+++++ .++.++...++ .+++|++|+++++ .+.... +...+ .+++|++|++++|
T Consensus 119 ~f~~L~~L~~L~Ls~N-~l~~l~~~~~~-----~L~~L~~L~Ls~N-~l~~~~~~~~~~-----~l~~L~~L~L~~N 183 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVET-NLASLENFPIG-----HLKTLKELNVAHN-LIQSFKLPEYFS-----NLTNLEHLDLSSN 183 (635)
T ss_dssp GGTTCTTCCEEECTTS-CCCCSTTCCCT-----TCTTCCEEECCSS-CCCCCCCCGGGG-----GCTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCC-cCCCCChhhhh-----cCcccCeeccccC-ccccCCCchhhc-----cchhhhhhcccCc
Confidence 899999999999996 57888765444 5899999999876 333332 22222 2888999999877
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=8.2e-13 Score=126.69 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=30.5
Q ss_pred CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322 171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL 232 (498)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~ 232 (498)
..+++|++|+++++....+|. +. .+++|++|++++| .+..+|.++.+++|++|++++|
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~-~~--~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP-LK--NLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GT--TCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTS
T ss_pred hccCCCCEEEccCCcCCCChh-Hc--cCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCC
Confidence 334555555555555555544 33 3555555555554 2444444555555555555553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=3.9e-12 Score=120.77 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=104.7
Q ss_pred CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCC
Q 048322 172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
.+++++.+++++++...+|..+. ++++.|++++| .+..+++ +..+++|++|+++++ .++.++.. .
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP----KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-------G 74 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC----TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-------S
T ss_pred ccCCccEEECCCCCCCcCCCCCC----CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-------C
Confidence 34667777777777777765442 56777777775 3444432 667777777777764 35555432 2
Q ss_pred CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322 250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL 329 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L 329 (498)
.+++|+.|+++++ .++.+... . ..+++|++|+++++ .++ .+|.. .+..+++|++|
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~-~-----~~l~~L~~L~l~~N-~l~-~l~~~----------------~~~~l~~L~~L 129 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLL-G-----QTLPALTVLDVSFN-RLT-SLPLG----------------ALRGLGELQEL 129 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCC-T-----TTCTTCCEEECCSS-CCC-CCCSS----------------TTTTCTTCCEE
T ss_pred CCCcCCEEECCCC-cCCcCchh-h-----ccCCCCCEEECCCC-cCc-ccCHH----------------HHcCCCCCCEE
Confidence 3666666666654 33332211 1 12666666666665 343 33320 34445666666
Q ss_pred EecCCCcceecCC--CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCC
Q 048322 330 EVDECKELVCRTP--IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNS 407 (498)
Q Consensus 330 ~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c 407 (498)
++++|....++.. ..+++|+.|++++| .++.+|.. .+..+++|+.|+++++
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---------------~l~~l~~~------------~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANN---------------NLTELPAG------------LLNGLENLDTLLLQEN 182 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTS---------------CCSCCCTT------------TTTTCTTCCEEECCSS
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCC---------------cCCccCHH------------HhcCcCCCCEEECCCC
Confidence 6666654443321 23555666665554 22233321 1123445555665553
Q ss_pred CCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 408 EQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 408 ~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
.++. +|.++..+++|+.|.+.+++
T Consensus 183 -~l~~------ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 183 -SLYT------IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCC------CCTTTTTTCCCSEEECCSCC
T ss_pred -cCCc------cChhhcccccCCeEEeCCCC
Confidence 2332 26666666667777766544
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=7.8e-13 Score=126.85 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=121.7
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
++|++|+++++....+|. +. .+++|++|++++| .+..+++++.+++|++|+++++. +
T Consensus 41 ~~L~~L~l~~~~i~~l~~-~~--~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l------------------ 97 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEG-VQ--YLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-L------------------ 97 (308)
T ss_dssp HTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-C------------------
T ss_pred CCcCEEEeeCCCccCchh-hh--ccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-C------------------
Confidence 566666666666655553 33 3666666666664 44455555555566666555532 2
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE 333 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~ 333 (498)
+.+. .+..+++|++|++++| .++ .+| .+..+++|++|++++
T Consensus 98 ------------~~~~-------~~~~l~~L~~L~l~~n-~l~-~~~------------------~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 98 ------------KNVS-------AIAGLQSIKTLDLTST-QIT-DVT------------------PLAGLSNLQVLYLDL 138 (308)
T ss_dssp ------------SCCG-------GGTTCTTCCEEECTTS-CCC-CCG------------------GGTTCTTCCEEECCS
T ss_pred ------------CCch-------hhcCCCCCCEEECCCC-CCC-Cch------------------hhcCCCCCCEEECCC
Confidence 2111 1122788888988887 343 333 345688999999999
Q ss_pred CCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecCC------CCCCCCCccEEEEc
Q 048322 334 CKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGKL------LEPGFQILETLVIG 405 (498)
Q Consensus 334 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~~------~~~~lp~L~~L~l~ 405 (498)
|....++....+++|+.|++++|.+ ..++ ..+++|+.|++++| .+..+++|+.|+++
T Consensus 139 n~l~~~~~l~~l~~L~~L~l~~n~l---------------~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 139 NQITNISPLAGLTNLQYLSIGNAQV---------------SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCC---------------CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred CccCcCccccCCCCccEEEccCCcC---------------CCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 9877766666789999999988733 2222 34578999999998 24456779999998
Q ss_pred CCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCC
Q 048322 406 NSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPE 445 (498)
Q Consensus 406 ~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~ 445 (498)
+|. ++.+ + .+..+++|++|++++| .+...|.
T Consensus 204 ~N~-l~~~------~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 204 NNQ-ISDV------S-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp TSC-CCBC------G-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred CCc-cCcc------c-cccCCCCCCEEEccCC-eeecCCe
Confidence 854 4432 4 3678899999999886 3455443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=1.3e-11 Score=117.24 Aligned_cols=194 Identities=19% Similarity=0.190 Sum_probs=133.0
Q ss_pred CCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC
Q 048322 197 LFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN 275 (498)
Q Consensus 197 ~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 275 (498)
.+++++.+++++ ..++.+|. +. ++++.|+++++ .+..++...+. .+++|+.|+++++ .++.+... +
T Consensus 8 ~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~--~- 74 (290)
T 1p9a_G 8 KVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLM-----PYTRLTQLNLDRA-ELTKLQVD--G- 74 (290)
T ss_dssp CSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGT-----TCTTCCEEECTTS-CCCEEECC--S-
T ss_pred ccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhh-----cCCCCCEEECCCC-ccCcccCC--C-
Confidence 478899999987 46788886 43 68999999985 46666544333 4889999999876 45544321 2
Q ss_pred ccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEE
Q 048322 276 VHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTI 353 (498)
Q Consensus 276 ~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l 353 (498)
.+++|++|+++++ .++ .+|. .+..+++|++|++++|....++. ...+++|+.|++
T Consensus 75 ----~l~~L~~L~Ls~N-~l~-~l~~-----------------~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 75 ----TLPVLGTLDLSHN-QLQ-SLPL-----------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp ----CCTTCCEEECCSS-CCS-SCCC-----------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred ----CCCcCCEEECCCC-cCC-cCch-----------------hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 2889999999887 454 5664 44557788888888887665442 334677777777
Q ss_pred eccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCc-cCCCCCCcCeE
Q 048322 354 SNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSM-GFQRLTSLQSL 432 (498)
Q Consensus 354 ~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~-~l~~l~~L~~L 432 (498)
++| .+..+|.. .+..+++|+.|+++++ .++.+ |. .+..+++|++|
T Consensus 132 ~~N---------------~l~~~~~~------------~~~~l~~L~~L~L~~N-~l~~l------~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 132 KGN---------------ELKTLPPG------------LLTPTPKLEKLSLANN-NLTEL------PAGLLNGLENLDTL 177 (290)
T ss_dssp TTS---------------CCCCCCTT------------TTTTCTTCCEEECTTS-CCSCC------CTTTTTTCTTCCEE
T ss_pred CCC---------------CCCccChh------------hcccccCCCEEECCCC-cCCcc------CHHHhcCcCCCCEE
Confidence 665 23333321 1244666888888774 45443 54 45789999999
Q ss_pred eeecCCCCCcCCCC-CccccccceeeccCc
Q 048322 433 KIWNCPNLTLFPEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 433 ~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~ 461 (498)
+++++ .++.+|.. ...++|+.|++.++|
T Consensus 178 ~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 178 LLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 99985 78899876 334689999998654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=8e-12 Score=117.78 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred CccEEEEcCCCCCCCccccCCCCc-cCCCCCCcCeEeeecCC
Q 048322 398 ILETLVIGNSEQLKPWRQGRGLSM-GFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 398 ~L~~L~l~~c~~L~~l~~l~~l~~-~l~~l~~L~~L~l~~c~ 438 (498)
+|+.|+++++. ++.+ |. .+..+++|++|++++++
T Consensus 201 ~L~~L~L~~n~-l~~~------~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 201 RLKELALDTNQ-LKSV------PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEEECCSSC-CSCC------CTTTTTTCCSCCEEECCSSC
T ss_pred cccEEECCCCc-eeec------CHhHhcccccccEEEccCCc
Confidence 46667776643 4432 33 34667777777777654
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=9.5e-13 Score=126.52 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=92.0
Q ss_pred CCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCc-----cccceeeccccccceecCccccCC
Q 048322 173 HKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLL-----SSLKHLAVKGLKKLKSIESEVYGE 245 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l-----~~L~~L~l~~~~~l~~i~~~~~~~ 245 (498)
+++|++|+++++... ..|..+....+++|++|++++| .+..+|. ++.+ ++|++|+++++ .+..++...++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~- 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR- 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC-
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc-
Confidence 356666666666544 3454431114566666666664 3333343 4444 56666666653 34444432222
Q ss_pred CCCCCCCCCceeeccCCCccccc--cccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCC
Q 048322 246 GFSMPFPSLKILRFENLPEWWHW--DTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSY 323 (498)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l 323 (498)
.+++|++|+++++.-.... ..... ...+++|++|++++| .++ .+|. +.. ..+..+
T Consensus 171 ----~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~l~~L~~L~L~~N-~l~-~~~~----~~~---------~~~~~l 227 (312)
T 1wwl_A 171 ----VFPALSTLDLSDNPELGERGLISALC----PLKFPTLQVLALRNA-GME-TPSG----VCS---------ALAAAR 227 (312)
T ss_dssp ----CCSSCCEEECCSCTTCHHHHHHHHSC----TTSCTTCCEEECTTS-CCC-CHHH----HHH---------HHHHTT
T ss_pred ----cCCCCCEEECCCCCcCcchHHHHHHH----hccCCCCCEEECCCC-cCc-chHH----HHH---------HHHhcC
Confidence 3566666666655321111 00100 011566666666665 222 1110 000 011124
Q ss_pred ccccEEEecCCCcceec---CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC------CC
Q 048322 324 PRLCRLEVDECKELVCR---TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL------LE 393 (498)
Q Consensus 324 ~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~------~~ 393 (498)
++|++|++++|...... ....+++|+.|++++| .++.+|..+ ++|+.|++++| .+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N---------------~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~ 292 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------GLKQVPKGLPAKLSVLDLSYNRLDRNPSP 292 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS---------------CCSSCCSSCCSEEEEEECCSSCCCSCCCT
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC---------------ccChhhhhccCCceEEECCCCCCCCChhH
Confidence 55666666666544322 2223456666666654 333444444 46666666666 23
Q ss_pred CCCCCccEEEEcCC
Q 048322 394 PGFQILETLVIGNS 407 (498)
Q Consensus 394 ~~lp~L~~L~l~~c 407 (498)
..+++|++|+++++
T Consensus 293 ~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 293 DELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCEEEEEECTTC
T ss_pred hhCCCCCEEeccCC
Confidence 34556777777764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=2.2e-12 Score=121.36 Aligned_cols=179 Identities=21% Similarity=0.217 Sum_probs=114.2
Q ss_pred CCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCc
Q 048322 197 LFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNV 276 (498)
Q Consensus 197 ~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 276 (498)
.+++|+.|++.+| .+..++.++.+++|++|+++++. +..++ . +..+++|++|+++++ .++.+.+.....
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~------l~~l~~L~~L~L~~n-~l~~~~~~~~~~- 107 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDIS-A------LKELTNLTYLILTGN-QLQSLPNGVFDK- 107 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCG-G------GTTCTTCCEEECTTS-CCCCCCTTTTTT-
T ss_pred cccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCch-h------hcCCCCCCEEECCCC-ccCccChhHhcC-
Confidence 4788999999986 57788889999999999999864 55543 1 235888888888876 455544332222
Q ss_pred cccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEe
Q 048322 277 HVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTIS 354 (498)
Q Consensus 277 ~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~ 354 (498)
+++|++|++++| .++ .+|.. .+..+++|++|++++|....++. ...+++|+.|+++
T Consensus 108 ----l~~L~~L~L~~n-~l~-~~~~~----------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 108 ----LTNLKELVLVEN-QLQ-SLPDG----------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp ----CTTCCEEECTTS-CCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----CcCCCEEECCCC-cCC-ccCHH----------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 788888888887 444 33321 35567788888888886555443 2346777777776
Q ss_pred ccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEee
Q 048322 355 NSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKI 434 (498)
Q Consensus 355 ~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l 434 (498)
+|. +..+|.. .++.+++|+.|+++++. ++.+ .+..+..+++|++|++
T Consensus 166 ~n~---------------l~~~~~~------------~~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 166 YNQ---------------LQSLPEG------------VFDKLTQLKDLRLYQNQ-LKSV-----PDGVFDRLTSLQYIWL 212 (272)
T ss_dssp SSC---------------CCCCCTT------------TTTTCTTCCEEECCSSC-CSCC-----CTTTTTTCTTCCEEEC
T ss_pred CCC---------------cCccCHH------------HhcCCccCCEEECCCCc-CCcc-----CHHHHhCCcCCCEEEc
Confidence 652 2222211 12345566666666643 3322 1344667777888887
Q ss_pred ecCCCCC
Q 048322 435 WNCPNLT 441 (498)
Q Consensus 435 ~~c~~l~ 441 (498)
++|+...
T Consensus 213 ~~N~~~~ 219 (272)
T 3rfs_A 213 HDNPWDC 219 (272)
T ss_dssp CSSCBCC
T ss_pred cCCCccc
Confidence 7765433
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=1.2e-11 Score=116.28 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=110.3
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
+++++|+++++....+|. .+. .+++|++|++++| .+..+|. ++.+++|++|+++++ .+..++...+. .
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFD-----Q 107 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred CCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcc-----c
Confidence 678999999988877775 344 5889999999885 5667776 678999999999885 47777765543 5
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
+++|++|+++++ .++.+.+.... .+++|++|++++| .++ .+|.. .+..+++|++|+
T Consensus 108 l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~Ls~n-~l~-~~~~~----------------~~~~l~~L~~L~ 163 (270)
T 2o6q_A 108 LVNLAELRLDRN-QLKSLPPRVFD-----SLTKLTYLSLGYN-ELQ-SLPKG----------------VFDKLTSLKELR 163 (270)
T ss_dssp CSSCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEE
T ss_pred ccCCCEEECCCC-ccCeeCHHHhC-----cCcCCCEEECCCC-cCC-ccCHh----------------HccCCcccceeE
Confidence 889999999876 44544433222 2889999999988 454 45531 356688999999
Q ss_pred ecCCCcceecC--CCCCCCccEEEEecc
Q 048322 331 VDECKELVCRT--PIDSKLIKFMTISNS 356 (498)
Q Consensus 331 l~~~~~~~~~~--~~~~~~L~~L~l~~~ 356 (498)
+++|....++. ...+++|+.|++++|
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 99887666543 334788888888876
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=2e-14 Score=139.83 Aligned_cols=225 Identities=17% Similarity=0.217 Sum_probs=118.1
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC-CCC-CCCccccceeeccccccce-ecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS-LPS-LGLLSSLKHLAVKGLKKLK-SIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~-lp~-i~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~ 250 (498)
++++.|++.++.....+..+. .+++|++|++++|..... +|. ++.+++|++|++++|. +. ..+..+ ..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l------~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTL------AK 140 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCC--CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHH------TT
T ss_pred ccceEEEcCCccccccchhhc--cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHH------hc
Confidence 456667666665444433333 467777777777642212 454 6677777777777763 32 222222 13
Q ss_pred CCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCcccc-CCCCcchHHHHHHhcccccccCCCCc-ccc
Q 048322 251 FPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLSGK-LPELLPSLEILVSKCEKLVVSLSSYP-RLC 327 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-lp~~l~~L~~Li~~~~~l~~~~~~l~-~L~ 327 (498)
+++|++|+++++..++... +... ..+++|++|++++|+.+++. ++. .+..++ +|+
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~-----------------~~~~l~~~L~ 198 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLL-----SSCSRLDELNLSWCFDFTEKHVQV-----------------AVAHVSETIT 198 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHH-----HHCTTCCEEECCCCTTCCHHHHHH-----------------HHHHSCTTCC
T ss_pred CCCCCEEECCCCCCCCHHHHHHHH-----hcCCCCCEEcCCCCCCcChHHHHH-----------------HHHhcccCCC
Confidence 6777777777765444321 1111 12677777777777544311 110 122245 677
Q ss_pred EEEecCCCc-ce---ecC-CCCCCCccEEEEeccE-eeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccE
Q 048322 328 RLEVDECKE-LV---CRT-PIDSKLIKFMTISNSS-LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILET 401 (498)
Q Consensus 328 ~L~l~~~~~-~~---~~~-~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~ 401 (498)
+|++++|.. +. ++. ...+++|+.|++++|. +... .+. .+..+++|++
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------~~~-------------~l~~l~~L~~ 251 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND--------------CFQ-------------EFFQLNYLQH 251 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG--------------GGG-------------GGGGCTTCCE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH--------------HHH-------------HHhCCCCCCE
Confidence 777777641 11 111 1125666666665541 1100 000 1234566778
Q ss_pred EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC---ccccccceeeccCchhHhhh
Q 048322 402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG---LPSSLLDLYVNNCPRLKKVC 467 (498)
Q Consensus 402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~sL~~L~i~~c~~l~~~~ 467 (498)
|++++|..+..- . ...+..+++|++|++++| ++..+ +..+|+.|+++ |..+....
T Consensus 252 L~l~~~~~~~~~-~----~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 252 LSLSRCYDIIPE-T----LLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp EECTTCTTCCGG-G----GGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred eeCCCCCCCCHH-H----HHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence 888777644310 0 114567888888888887 44432 22457778875 44444433
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=3.9e-12 Score=119.93 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=97.9
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
++|++|+++++....++. .+. .+++|++|++++| .+..+++ ++.+++|++|+++++ .+..++...+. .
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS-----G 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----T
T ss_pred CCccEEECCCCcccccCHhHhc--cccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhhc-----C
Confidence 456777777666655544 343 4667777777765 4445443 666777777777664 35555543332 3
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc-cCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG-KLPELLPSLEILVSKCEKLVVSLSSYPRLCRL 329 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L 329 (498)
+++|++|++.++ .+....... +..+++|++|++++|. +.+ .+|. .+..+++|++|
T Consensus 99 l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~l~~-----------------~~~~l~~L~~L 154 (276)
T 2z62_A 99 LSSLQKLVAVET-NLASLENFP-----IGHLKTLKELNVAHNL-IQSFKLPE-----------------YFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTS-CCCCSTTCC-----CTTCTTCCEEECCSSC-CCCCCCCG-----------------GGGGCTTCCEE
T ss_pred CccccEEECCCC-CccccCchh-----cccCCCCCEEECcCCc-cceecCch-----------------hhccCCCCCEE
Confidence 667777777655 333332111 1226677777777663 321 1333 23345566666
Q ss_pred EecCCCcceecC--CCCCCCcc----EEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCC--------C
Q 048322 330 EVDECKELVCRT--PIDSKLIK----FMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKL--------L 392 (498)
Q Consensus 330 ~l~~~~~~~~~~--~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~--------~ 392 (498)
++++|....++. ...+++|+ .|++++|.+. .++... .+|+.|++++| .
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~---------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---------------FIQPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC---------------EECTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc---------------ccCccccCCCcccEEECCCCceeecCHhH
Confidence 666665444321 11122333 5555554222 222111 35666666666 1
Q ss_pred CCCCCCccEEEEcCC
Q 048322 393 EPGFQILETLVIGNS 407 (498)
Q Consensus 393 ~~~lp~L~~L~l~~c 407 (498)
+..+++|+.|+++++
T Consensus 220 ~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 220 FDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTCCSCCEEECCSS
T ss_pred hcccccccEEEccCC
Confidence 345666777777764
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=6.6e-12 Score=112.03 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=87.7
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccccccee-cCccccCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSMPFP 252 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~~~~ 252 (498)
++|++|+++++....+| .+. .+++|++|++++| .+..++.++.+++|++|+++++. +.. .+..+ ..++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~--~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l------~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE--YAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNL------SGLT 112 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG--GCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCC------TTCT
T ss_pred CCccEEeccCCCccChH-HHh--cCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhh------cCCC
Confidence 56677777776666666 344 4677777777776 55566667777777777777643 433 22222 2367
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|++|+++++ .+....+.. +..+++|++|++++|..+. .+| .+..+++|++|+++
T Consensus 113 ~L~~L~Ls~n-~i~~~~~~~-----l~~l~~L~~L~L~~n~~i~-~~~------------------~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 113 SLTLLDISHS-AHDDSILTK-----INTLPKVNSIDLSYNGAIT-DIM------------------PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEECCSS-BCBGGGHHH-----HTTCSSCCEEECCSCTBCC-CCG------------------GGGGCSSCCEEECT
T ss_pred CCCEEEecCC-ccCcHhHHH-----HhhCCCCCEEEccCCCCcc-ccH------------------hhcCCCCCCEEECC
Confidence 7777777665 333222111 1227777788877775343 333 23346677777777
Q ss_pred CCCcceecCCCCCCCccEEEEeccE
Q 048322 333 ECKELVCRTPIDSKLIKFMTISNSS 357 (498)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~ 357 (498)
+|....++....+++|++|++++|.
T Consensus 168 ~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCCCcChHHhccCCCCCEEEeeCcc
Confidence 7766555544456777777776653
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=4.6e-14 Score=148.21 Aligned_cols=300 Identities=13% Similarity=0.069 Sum_probs=144.0
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-----CccccCCCCCCccEEeEeCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-----PLWIGDPLFSKIEFLELENCNN 211 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~l~~c~~ 211 (498)
..++++|+.|+|+++.-.+ .. ......++. .+++|++|+++++....+ +..+. .+++|++|++++|.
T Consensus 160 ~~~~~~L~~L~L~~~~~~~-~~-~~~l~~~~~---~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~- 231 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSE-KD-GKWLHELAQ---HNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGDFE- 231 (592)
T ss_dssp HHHCTTCSEEECTTCEEEC-CC-SHHHHHHHH---HCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSSCB-
T ss_pred HhhCCCCCEEECccccccC-cc-hhHHHHHHh---cCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccCcc-
Confidence 3467788888887664100 00 000111222 246777777776655422 22222 36777777777753
Q ss_pred CCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeec
Q 048322 212 CVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVV 290 (498)
Q Consensus 212 ~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (498)
+..+|. ++.+++|++|.++.+......+. .+ ..+..+++|+.|.+.++.. ..+ +... ..+++|++|+++
T Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~--~~l~~~~~L~~L~l~~~~~-~~l-~~~~-----~~~~~L~~L~Ls 301 (592)
T 3ogk_B 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPE-KY--MNLVFPRKLCRLGLSYMGP-NEM-PILF-----PFAAQIRKLDLL 301 (592)
T ss_dssp GGGGHHHHHHCTTCCEEEECBCCCCTTCTT-SS--SCCCCCTTCCEEEETTCCT-TTG-GGGG-----GGGGGCCEEEET
T ss_pred HHHHHHHHhhhhHHHhhcccccccccchHH-HH--HHhhccccccccCccccch-hHH-HHHH-----hhcCCCcEEecC
Confidence 334444 55666777776654321111010 00 1123355566665544311 111 1111 115566666666
Q ss_pred cCCCcccc-C---CCCcchHHHH-HHhccc---ccccCCCCccccEEEecC----------CCcceecC----CCCCCCc
Q 048322 291 KCPKLSGK-L---PELLPSLEIL-VSKCEK---LVVSLSSYPRLCRLEVDE----------CKELVCRT----PIDSKLI 348 (498)
Q Consensus 291 ~c~~l~~~-l---p~~l~~L~~L-i~~~~~---l~~~~~~l~~L~~L~l~~----------~~~~~~~~----~~~~~~L 348 (498)
+|. +.+. + ...+++|+.| +..+-. +......+++|++|++.+ |..+.... ...+++|
T Consensus 302 ~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 654 2211 1 0223334433 321100 000111245566666663 33332110 1114556
Q ss_pred cEEEEeccEeeee-------cCCCCc-------cCCCCCCcCC---------CCCCCCCeEEecCCC-----------CC
Q 048322 349 KFMTISNSSLDMI-------GCKGML-------YDSQAGSSLP---------KPMTTTNVLEFGKLL-----------EP 394 (498)
Q Consensus 349 ~~L~l~~~~l~~~-------~~~~l~-------~~~~~l~~lp---------~~l~~L~~L~i~~~~-----------~~ 394 (498)
++|++..+.+... .|+.|. ..|+.++..| ..+++|+.|++++|. ..
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 6665543322111 133332 1345555443 234788889886551 12
Q ss_pred CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCc--CCCC-CccccccceeeccCc
Q 048322 395 GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTL--FPEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 395 ~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~--lp~~-~~~~sL~~L~i~~c~ 461 (498)
.+|+|+.|++++|. ++.. .++..+..+++|++|++++|+ ++. ++.. ...++|+.|++++|.
T Consensus 461 ~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHH----HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 47789999998765 4310 113445677889999999987 432 2211 224789999999887
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=9.9e-12 Score=119.28 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCCC-----CCCccccceeeccccccceecCccccCCCC
Q 048322 174 KCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLPS-----LGLLSSLKHLAVKGLKKLKSIESEVYGEGF 247 (498)
Q Consensus 174 ~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-----i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 247 (498)
++|++|+++++... ..|..+....+++|++|++++|......|. +..+++|++|+++++ .+..++...++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~--- 166 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVR--- 166 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCC---
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhc---
Confidence 45777777766643 233333101466777777776543333331 345667777777664 34444433332
Q ss_pred CCCCCCCceeeccCCCcccc--cc-ccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCc
Q 048322 248 SMPFPSLKILRFENLPEWWH--WD-TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYP 324 (498)
Q Consensus 248 ~~~~~~L~~L~l~~~~~l~~--~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~ 324 (498)
.+++|++|+++++.-... .. ....+ .+++|++|++++| .++ .+|. .-. . .+..++
T Consensus 167 --~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-----~l~~L~~L~Ls~N-~l~-~l~~----~~~------~---l~~~l~ 224 (310)
T 4glp_A 167 --AFPALTSLDLSDNPGLGERGLMAALCPH-----KFPAIQNLALRNT-GME-TPTG----VCA------A---LAAAGV 224 (310)
T ss_dssp --CCTTCCEEECCSCTTCHHHHHHTTSCTT-----SSCCCCSCBCCSS-CCC-CHHH----HHH------H---HHHHTC
T ss_pred --cCCCCCEEECCCCCCccchhhhHHHhhh-----cCCCCCEEECCCC-CCC-chHH----HHH------H---HHhcCC
Confidence 466777777766532111 11 11111 2667777777766 332 2111 000 0 011245
Q ss_pred cccEEEecCCCccee-cC-CCC---CCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC------C
Q 048322 325 RLCRLEVDECKELVC-RT-PID---SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL------L 392 (498)
Q Consensus 325 ~L~~L~l~~~~~~~~-~~-~~~---~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~------~ 392 (498)
+|++|++++|..... +. ... +++|++|++++| .++.+|..+ ++|+.|++++| .
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N---------------~l~~lp~~~~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA---------------GLEQVPKGLPAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS---------------CCCSCCSCCCSCCSCEECCSCCCCSCCC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC---------------CCCchhhhhcCCCCEEECCCCcCCCCch
Confidence 666777776665443 11 112 357777777665 333444433 56777777776 1
Q ss_pred CCCCCCccEEEEcCC
Q 048322 393 EPGFQILETLVIGNS 407 (498)
Q Consensus 393 ~~~lp~L~~L~l~~c 407 (498)
...+|+|+.|+++++
T Consensus 290 ~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTSCCCCSCEECSST
T ss_pred hhhCCCccEEECcCC
Confidence 234566777777764
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=2.2e-11 Score=116.83 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=111.5
Q ss_pred CCCccEEeEeCCCCCCCCCC-C--CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccC
Q 048322 198 FSKIEFLELENCNNCVSLPS-L--GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKG 274 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~-i--~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 274 (498)
+++|++|++++|......|. + +.+++|++|+++++. +......+.. .....+++|++|+++++ .+....+....
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~ 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAE-LQQWLKPGLKVLSIAQA-HSPAFSCEQVR 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHH-HHTTBCSCCCEEEEECC-SSCCCCTTSCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHH-HHhhhccCCCEEEeeCC-CcchhhHHHhc
Confidence 46799999999865556665 5 889999999999864 3321110000 00113667777777665 33333322222
Q ss_pred CccccCCCccceeeeccCCCcccc--CCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCC-----CCCCC
Q 048322 275 NVHVDIFPRLQELSVVKCPKLSGK--LPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTP-----IDSKL 347 (498)
Q Consensus 275 ~~~~~~l~~L~~L~l~~c~~l~~~--lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~ 347 (498)
. +++|++|++++|.... . ++. ...+..+++|++|++++|....++.. ..+++
T Consensus 167 ~-----l~~L~~L~Ls~N~l~~-~~~~~~---------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 167 A-----FPALTSLDLSDNPGLG-ERGLMA---------------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp C-----CTTCCEEECCSCTTCH-HHHHHT---------------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred c-----CCCCCEEECCCCCCcc-chhhhH---------------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 2 6677777777663211 0 110 00123466677777776655432221 12466
Q ss_pred ccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCC
Q 048322 348 IKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLT 427 (498)
Q Consensus 348 L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~ 427 (498)
|++|++++|.+... .|..+.. ..++++|++|+++++ .++.+ |.++. +
T Consensus 226 L~~L~Ls~N~l~~~--------------~p~~~~~----------~~~~~~L~~L~Ls~N-~l~~l------p~~~~--~ 272 (310)
T 4glp_A 226 PHSLDLSHNSLRAT--------------VNPSAPR----------CMWSSALNSLNLSFA-GLEQV------PKGLP--A 272 (310)
T ss_dssp CSSEECTTSCCCCC--------------CCSCCSS----------CCCCTTCCCEECCSS-CCCSC------CSCCC--S
T ss_pred CCEEECCCCCCCcc--------------chhhHHh----------ccCcCcCCEEECCCC-CCCch------hhhhc--C
Confidence 66666665522111 0111100 011245777777663 34332 55553 6
Q ss_pred CcCeEeeecCCCCCcCCCCCccccccceeeccCc
Q 048322 428 SLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 428 ~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 461 (498)
+|++|++++| .++.+|....+++|+.|++++++
T Consensus 273 ~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 273 KLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 8888888875 66666654445778888887764
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=9.5e-11 Score=108.72 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=90.8
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
+.+++++++++...+|..+. ++|+.|++++|. +..+++ ++.+++|++|+++++ .+..++...+. .++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFD-----DLT 83 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-----TCT
T ss_pred CCeEEecCCCCccccCCCCC----CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhc-----cCC
Confidence 45677777777777776543 467788887753 444443 777788888888774 46555544332 477
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|++|+++++ .++.+.+..... +++|++|+++++ .++ .+|.. .+..+++|++|+++
T Consensus 84 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~~~~~----------------~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 84 ELGTLGLANN-QLASLPLGVFDH-----LTQLDKLYLGGN-QLK-SLPSG----------------VFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECC
T ss_pred cCCEEECCCC-cccccChhHhcc-----cCCCCEEEcCCC-cCC-CcChh----------------HhccCCcccEEECc
Confidence 7777777765 344443322222 677777877776 444 44431 34456777777777
Q ss_pred CCCcceecC--CCCCCCccEEEEecc
Q 048322 333 ECKELVCRT--PIDSKLIKFMTISNS 356 (498)
Q Consensus 333 ~~~~~~~~~--~~~~~~L~~L~l~~~ 356 (498)
+|....++. ...+++|+.|++++|
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCC
Confidence 776555443 334667777777665
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=1.5e-14 Score=147.03 Aligned_cols=147 Identities=19% Similarity=0.160 Sum_probs=76.4
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-CccccCCCCC----CccEEeEeCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFS----KIEFLELENCNN 211 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~----~L~~L~l~~c~~ 211 (498)
+..+++|+.|+++.+.- .......+.+.+..+++|++|+++++..... +..+.. .++ +|++|++++|.
T Consensus 24 ~~~~~~L~~L~L~~~~l-----~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~- 96 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGL-----TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCC- 96 (461)
T ss_dssp HHHHTTCSEEEEESSCC-----CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSC-
T ss_pred HhhcCCccEEEccCCCC-----CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCC-
Confidence 56677888888877652 1112223445555567888888887764321 212211 233 68888888864
Q ss_pred CC-----CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccc
Q 048322 212 CV-----SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQ 285 (498)
Q Consensus 212 ~~-----~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~ 285 (498)
++ .+|. +..+++|++|+++++. +...+.......-....++|++|+++++ .+........ ...+..+++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l-~~~l~~~~~L~ 173 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPL-ASVLRAKPDFK 173 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH-HHHHHHCTTCC
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHH-HHHHhhCCCCC
Confidence 33 3344 7778888888888754 4322111110000112456777777766 2222110000 00011256667
Q ss_pred eeeeccCC
Q 048322 286 ELSVVKCP 293 (498)
Q Consensus 286 ~L~l~~c~ 293 (498)
+|++++|.
T Consensus 174 ~L~L~~n~ 181 (461)
T 1z7x_W 174 ELTVSNND 181 (461)
T ss_dssp EEECCSSB
T ss_pred EEECcCCC
Confidence 77766663
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.22 E-value=1e-13 Score=134.75 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=118.3
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC--CCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR--FPLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
.+++.|++..+.-. .....+..+++|++|+++++.... +|..+. .+++|++|++++|......|.
T Consensus 70 ~~l~~L~l~~n~l~----------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMD----------QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNT 137 (336)
T ss_dssp TTCSEEECTTCEEC----------SCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHH
T ss_pred ccceEEEcCCcccc----------ccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHH
Confidence 68888888655310 112224457999999999987542 555555 689999999999853334444
Q ss_pred CCCccccceeecccccccee--cCccccCCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCC-ccceeeeccCC
Q 048322 218 LGLLSSLKHLAVKGLKKLKS--IESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFP-RLQELSVVKCP 293 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~--i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~-~L~~L~l~~c~ 293 (498)
++.+++|++|++++|..++. ++..+. .+++|++|+++++..++... +... ..++ +|++|++++|.
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~------~~~~L~~L~l~~~~~l~~~~~~~~~-----~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLS------SCSRLDELNLSWCFDFTEKHVQVAV-----AHVSETITQLNLSGYR 206 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHH------HCTTCCEEECCCCTTCCHHHHHHHH-----HHSCTTCCEEECCSCG
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHh------cCCCCCEEcCCCCCCcChHHHHHHH-----HhcccCCCEEEeCCCc
Confidence 78899999999999866653 333222 48999999999986665431 2211 2288 99999999985
Q ss_pred -Ccc-ccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcce---ecCCCCCCCccEEEEecc
Q 048322 294 -KLS-GKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELV---CRTPIDSKLIKFMTISNS 356 (498)
Q Consensus 294 -~l~-~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~ 356 (498)
.++ +.+|. .+..+++|++|++++|..+. ......+++|++|++++|
T Consensus 207 ~~~~~~~l~~-----------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 207 KNLQKSDLST-----------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGSCHHHHHH-----------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ccCCHHHHHH-----------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 332 11111 12236789999999998432 334445788888888765
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1.2e-10 Score=120.41 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=101.2
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
+|+.|++++++...+|..+ +++|++|+|++| .++.+| +.+++|++|+++++ .++.+|. +. .+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~--------~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQN-ALISLP--ELPASLEYLDACDN-RLSTLPE-LP--------ASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC-CC--------TTC
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCC-CCcccc--cccCCCCEEEccCC-CCCCcch-hh--------cCC
Confidence 5666666666665566543 256677777664 455666 45666777777664 4555554 21 166
Q ss_pred ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322 255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC 334 (498)
Q Consensus 255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~ 334 (498)
+.|+++++ .++.+.. . +++|+.|++++| .++ .+|. .+++|++|++++|
T Consensus 123 ~~L~Ls~N-~l~~lp~----~-----l~~L~~L~Ls~N-~l~-~lp~--------------------~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE----L-----PALLEYINADNN-QLT-MLPE--------------------LPTSLEVLSVRNN 170 (571)
T ss_dssp CEEECCSS-CCSCCCC----C-----CTTCCEEECCSS-CCS-CCCC--------------------CCTTCCEEECCSS
T ss_pred CEEECCCC-cCCCCCC----c-----CccccEEeCCCC-ccC-cCCC--------------------cCCCcCEEECCCC
Confidence 66666655 3333222 1 677777777766 343 3432 2456777777777
Q ss_pred CcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCC-CCCeEEecCCCCCCCCCccEEEEcCCCCCCCc
Q 048322 335 KELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMT-TTNVLEFGKLLEPGFQILETLVIGNSEQLKPW 413 (498)
Q Consensus 335 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~-~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l 413 (498)
....++. .. ++|+.|++++| .++.+|. ++ +| ....+.|+.|+++++ .++.
T Consensus 171 ~L~~lp~-l~-~~L~~L~Ls~N---------------~L~~lp~-~~~~L---------~~~~~~L~~L~Ls~N-~l~~- 221 (571)
T 3cvr_A 171 QLTFLPE-LP-ESLEALDVSTN---------------LLESLPA-VPVRN---------HHSEETEIFFRCREN-RITH- 221 (571)
T ss_dssp CCSCCCC-CC-TTCCEEECCSS---------------CCSSCCC-CC-----------------CCEEEECCSS-CCCC-
T ss_pred CCCCcch-hh-CCCCEEECcCC---------------CCCchhh-HHHhh---------hcccccceEEecCCC-ccee-
Confidence 6555554 22 67777777665 3334443 21 12 011122366666553 3433
Q ss_pred cccCCCCccCCCCCCcCeEeeecCCCCC
Q 048322 414 RQGRGLSMGFQRLTSLQSLKIWNCPNLT 441 (498)
Q Consensus 414 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 441 (498)
+|.++..+++|+.|++++|+.-.
T Consensus 222 -----lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 222 -----IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -----CCGGGGGSCTTEEEECCSSSCCH
T ss_pred -----cCHHHhcCCCCCEEEeeCCcCCC
Confidence 26666667777777777764433
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=2.5e-13 Score=142.62 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=48.6
Q ss_pred CCCCCeEEecCC-------CCC-CCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCCCCCcCCC--C-C
Q 048322 380 MTTTNVLEFGKL-------LEP-GFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCPNLTLFPE--V-G 447 (498)
Q Consensus 380 l~~L~~L~i~~~-------~~~-~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~lp~--~-~ 447 (498)
+++|+.|+++++ .+. .+++|+.|++++|. ++.. . +..+ ..+++|++|++++|+. +.... . .
T Consensus 431 ~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~-~----~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~ 503 (594)
T 2p1m_B 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL-G----MHHVLSGCDSLRKLEIRDCPF-GDKALLANAS 503 (594)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHH-H----HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGG
T ss_pred CCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHH-H----HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHH
Confidence 367888888764 111 26778888888865 3210 0 1112 4578999999999875 32111 1 2
Q ss_pred ccccccceeeccCch
Q 048322 448 LPSSLLDLYVNNCPR 462 (498)
Q Consensus 448 ~~~sL~~L~i~~c~~ 462 (498)
..++|+.|++++|+.
T Consensus 504 ~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 504 KLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGSSEEEEESSCC
T ss_pred hCCCCCEEeeeCCCC
Confidence 247899999999975
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=1.8e-13 Score=143.75 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=22.1
Q ss_pred CCCcCeEeeecCCCCCcCCCC---CccccccceeeccCch
Q 048322 426 LTSLQSLKIWNCPNLTLFPEV---GLPSSLLDLYVNNCPR 462 (498)
Q Consensus 426 l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~c~~ 462 (498)
+++|++|++++|. ++..... ...++|++|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 5677777777764 3221100 1147899999999874
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.19 E-value=2.5e-10 Score=105.85 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=113.9
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
++++.|+++++....++. .+. .+++|++|++++| .+..+++ ++.+++|++|+++++ .++.++...++ .
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD-----H 105 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-----T
T ss_pred CCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhc-----c
Confidence 689999999998777654 344 5899999999996 5555654 788999999999985 57777765554 5
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
+++|++|+++++ .++.+.+..... +++|++|++++| .++ .+|.. .+..+++|++|+
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~-~~~~~----------------~~~~l~~L~~L~ 161 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGVFDR-----LTKLKELRLNTN-QLQ-SIPAG----------------AFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEE
T ss_pred cCCCCEEEcCCC-cCCCcChhHhcc-----CCcccEEECcCC-cCC-ccCHH----------------HcCcCcCCCEEE
Confidence 899999999887 555554433233 899999999988 565 45431 456688999999
Q ss_pred ecCCCcceecC--CCCCCCccEEEEeccEeee
Q 048322 331 VDECKELVCRT--PIDSKLIKFMTISNSSLDM 360 (498)
Q Consensus 331 l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~ 360 (498)
+++|....++. ...+++|+.|++++|.+..
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99997766543 3347788888888775443
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=1.3e-10 Score=110.22 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322 171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL 232 (498)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~ 232 (498)
..+++|++|+++++....++. +. .+++|++|++++| .+..+|.++.+++|++|++++|
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~--~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LA--NLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS
T ss_pred hcCCCCCEEEccCCccCCCcc-cc--cCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC
Confidence 344666666666666555554 33 4666666666664 3455555666666666666654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=6.5e-11 Score=112.41 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=121.6
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
++|+.|+++++....+|. +. .+++|++|++++| .+..+++++.+++|++|+++++ .++.++. + ..+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~--~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~ 113 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS-L------KDLKK 113 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG-G------TTCTT
T ss_pred CcccEEEccCCCcccChh-Hh--cCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCC-cCCCChh-h------ccCCC
Confidence 678888888887777765 44 5899999999996 5677777999999999999986 4666553 2 35899
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE 333 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~ 333 (498)
|++|+++++ .++.+. .+..+++|+.|++++| .++ .++ .+..+++|+.|++++
T Consensus 114 L~~L~L~~n-~i~~~~-------~l~~l~~L~~L~l~~n-~l~-~~~------------------~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 114 LKSLSLEHN-GISDIN-------GLVHLPQLESLYLGNN-KIT-DIT------------------VLSRLTKLDTLSLED 165 (291)
T ss_dssp CCEEECTTS-CCCCCG-------GGGGCTTCCEEECCSS-CCC-CCG------------------GGGGCTTCSEEECCS
T ss_pred CCEEECCCC-cCCCCh-------hhcCCCCCCEEEccCC-cCC-cch------------------hhccCCCCCEEEccC
Confidence 999999887 444432 1233899999999988 443 232 345578899999999
Q ss_pred CCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC
Q 048322 334 CKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL 391 (498)
Q Consensus 334 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~ 391 (498)
|.....+....+++|+.|++++|.+.. +..+ ..+++|+.|++++|
T Consensus 166 N~l~~~~~l~~l~~L~~L~L~~N~i~~------------l~~l-~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 166 NQISDIVPLAGLTKLQNLYLSKNHISD------------LRAL-AGLKNLDVLELFSQ 210 (291)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCB------------CGGG-TTCTTCSEEEEEEE
T ss_pred CccccchhhcCCCccCEEECCCCcCCC------------Chhh-ccCCCCCEEECcCC
Confidence 887766666678999999998873321 1111 34588999999988
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=5.1e-13 Score=140.21 Aligned_cols=270 Identities=13% Similarity=0.114 Sum_probs=160.7
Q ss_pred hHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC----CCCccccCCCCCCccEEeEe
Q 048322 132 AREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA----RFPLWIGDPLFSKIEFLELE 207 (498)
Q Consensus 132 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~~l~~L~~L~l~ 207 (498)
....-+.++++|+.|++..+.. . .+...+...++|+.|.+.++.+. ..+..+. .+++|+.|.++
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~------~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~L~l~ 278 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEI------L----ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCRLGLS 278 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBG------G----GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCEEEET
T ss_pred HHHHHHhhCCCCcEEeccCccH------H----HHHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccccCcc
Confidence 3444556789999999977531 1 12333444589999999875433 2223333 57889999998
Q ss_pred CCCCCCCCCC-CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccc
Q 048322 208 NCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQ 285 (498)
Q Consensus 208 ~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~ 285 (498)
++ ....+|. +..+++|++|++++|. +..... .+. ..+++|+.|++.++..-..+ ..... .+++|+
T Consensus 279 ~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~l-~~~~~-----~~~~L~ 345 (592)
T 3ogk_B 279 YM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLI-----QKCPNLEVLETRNVIGDRGL-EVLAQ-----YCKQLK 345 (592)
T ss_dssp TC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHH-----TTCTTCCEEEEEGGGHHHHH-HHHHH-----HCTTCC
T ss_pred cc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHH-----HhCcCCCEEeccCccCHHHH-HHHHH-----hCCCCC
Confidence 74 4556666 6778999999999876 432211 111 35889999988733111111 11111 278899
Q ss_pred eeeecc----------CCCcccc-C---CCCcchHHHH-HHhcccccc----cCCC-CccccEEEecCCC---cceec--
Q 048322 286 ELSVVK----------CPKLSGK-L---PELLPSLEIL-VSKCEKLVV----SLSS-YPRLCRLEVDECK---ELVCR-- 340 (498)
Q Consensus 286 ~L~l~~----------c~~l~~~-l---p~~l~~L~~L-i~~~~~l~~----~~~~-l~~L~~L~l~~~~---~~~~~-- 340 (498)
+|++.+ |..+++. + ...+++|++| + .|+.+.. .+.. +++|++|++.++. .++-.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 999985 6554311 1 1123444444 4 3333332 1222 6788888887432 22210
Q ss_pred -----C-CCCCCCccEEEEeccE--eeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCC---------CCCCCCccEEE
Q 048322 341 -----T-PIDSKLIKFMTISNSS--LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLL---------EPGFQILETLV 403 (498)
Q Consensus 341 -----~-~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~---------~~~lp~L~~L~ 403 (498)
. ...+++|++|++++|. +... .+..+...+++|+.|++++|. ..++++|++|+
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDL----------GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHH----------HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHH----------HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 0 1127889999986541 1100 011122335789999999982 35689999999
Q ss_pred EcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC
Q 048322 404 IGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF 443 (498)
Q Consensus 404 l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l 443 (498)
|++|+ ++.- .++.....+++|++|++++|+ ++..
T Consensus 495 l~~n~-l~~~----~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 495 MRGCC-FSER----AIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp EESCC-CBHH----HHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred ccCCC-CcHH----HHHHHHHhcCccCeeECcCCc-CCHH
Confidence 99998 5421 013344578999999999997 5443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=1.8e-10 Score=120.12 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=119.7
Q ss_pred cccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 138 CEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
..+.+|+.|+++.+.- .. ++.+..+++|+.|+++++....+|. +. .+++|+.|+|++| .+..+|.
T Consensus 40 ~~L~~L~~L~l~~n~i-~~----------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N-~l~~l~~ 104 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI-KS----------VQGIQYLPNVTKLFLNGNKLTDIKP-LT--NLKNLGWLFLDEN-KIKDLSS 104 (605)
T ss_dssp HHHTTCCCCBCTTCCC-CC----------CTTGGGCTTCCEEECTTSCCCCCGG-GG--GCTTCCEEECCSS-CCCCCTT
T ss_pred hcCCCCCEEECcCCCC-CC----------ChHHccCCCCCEEEeeCCCCCCChh-hc--cCCCCCEEECcCC-CCCCChh
Confidence 4567788888865541 10 1235567889999999888777776 44 5888999999886 5677788
Q ss_pred CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG 297 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 297 (498)
++.+++|+.|++++|. +..++. +..+++|+.|+++++ .+..+. .+..+++|+.|+|++| .+.
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~-------l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~- 166 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDING-------LVHLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QIS- 166 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGG-------GGGCTTCSEEECCSS-CCCCCG-------GGGSCTTCSEEECCSS-CCC-
T ss_pred hccCCCCCEEEecCCC-CCCCcc-------ccCCCccCEEECCCC-ccCCch-------hhcccCCCCEEECcCC-cCC-
Confidence 8888999999998863 555432 234888888888876 344331 1233788888888887 343
Q ss_pred cCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeee
Q 048322 298 KLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDM 360 (498)
Q Consensus 298 ~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 360 (498)
.++ .+..+++|+.|++++|....++....+++|+.|++++|.+..
T Consensus 167 ~~~------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIV------------------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCG------------------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred Cch------------------hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 222 134577888888888877666666678888888888876544
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=2.3e-13 Score=138.33 Aligned_cols=297 Identities=18% Similarity=0.177 Sum_probs=157.8
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-----CCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-----RFPLWIGDPLFSKIEFLELENCNNCVSL 215 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~c~~~~~l 215 (498)
++|+.|+|+++.- .......++ ..+++|++|+++++... .+|..+. .+++|++|++++|. +...
T Consensus 3 ~~l~~L~Ls~~~l-----~~~~~~~~~---~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~-l~~~ 71 (461)
T 1z7x_W 3 LDIQSLDIQCEEL-----SDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNE-LGDV 71 (461)
T ss_dssp EEEEEEEEESCCC-----CHHHHHHHH---HHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCC-CHHH
T ss_pred ccceehhhhhccc-----CchhHHHHH---hhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCc-CChH
Confidence 4678899987652 111122223 33489999999999865 3455555 57999999999964 3321
Q ss_pred -C-CC-CCcc----ccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceee
Q 048322 216 -P-SL-GLLS----SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELS 288 (498)
Q Consensus 216 -p-~i-~~l~----~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 288 (498)
+ .+ ..++ +|++|++++|. +...+..... ..+..+++|++|+++++. +...........-....++|++|+
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLS-STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHH-HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHH-HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEE
Confidence 1 11 2233 79999999974 4432100000 112358999999999874 432211000000001156899999
Q ss_pred eccCCCcccc----CCCC---cchHHHH-HHhcccccc---cCC-----CCccccEEEecCCCccee-----c-CCCCCC
Q 048322 289 VVKCPKLSGK----LPEL---LPSLEIL-VSKCEKLVV---SLS-----SYPRLCRLEVDECKELVC-----R-TPIDSK 346 (498)
Q Consensus 289 l~~c~~l~~~----lp~~---l~~L~~L-i~~~~~l~~---~~~-----~l~~L~~L~l~~~~~~~~-----~-~~~~~~ 346 (498)
+++| .+++. ++.. +++|+.| +.+|.--.. .+. ..++|++|++++|..... + ....++
T Consensus 149 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 149 LEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp CTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred CCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 9998 44321 1111 1233333 333321000 011 134777777777754331 1 112357
Q ss_pred CccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCC------------CCCCccEEEEcCCCCCCCcc
Q 048322 347 LIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEP------------GFQILETLVIGNSEQLKPWR 414 (498)
Q Consensus 347 ~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~------------~lp~L~~L~l~~c~~L~~l~ 414 (498)
+|++|++++|.+...+...+. ..+....++|+.|++++|.+. .+++|++|+++++. ++..
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~- 299 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELC------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE- 299 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHH------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH-
T ss_pred CccEEeccCCcCChHHHHHHH------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH-
Confidence 777777776643221110000 001123467888888888322 26778888888763 3210
Q ss_pred ccCCCCccC-CCCCCcCeEeeecCCCCCcC-----CCC-CccccccceeeccCc
Q 048322 415 QGRGLSMGF-QRLTSLQSLKIWNCPNLTLF-----PEV-GLPSSLLDLYVNNCP 461 (498)
Q Consensus 415 ~l~~l~~~l-~~l~~L~~L~l~~c~~l~~l-----p~~-~~~~sL~~L~i~~c~ 461 (498)
....+...+ ...++|++|++++|. ++.. |.. ...++|++|++++|.
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 000011221 133689999999874 4432 111 123789999999884
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.12 E-value=8.2e-13 Score=131.01 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=61.8
Q ss_pred CccccEEEecCCCcce------ec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC---CCCCCCCeEEecCCC
Q 048322 323 YPRLCRLEVDECKELV------CR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP---KPMTTTNVLEFGKLL 392 (498)
Q Consensus 323 l~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp---~~l~~L~~L~i~~~~ 392 (498)
+++|++|++++|.... .+ ....+++|+.|++++|.+...++ ..+| ..+++|+.|++++|.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----------~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----------SALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----------HHHHHHGGGCTTCCEEECTTCC
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----------HHHHHHHccCCCcCEEECCCCC
Confidence 4577888888876541 22 34457788888887764321100 1122 233678888888872
Q ss_pred C--------------CCCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCC
Q 048322 393 E--------------PGFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCP 438 (498)
Q Consensus 393 ~--------------~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~ 438 (498)
+ +.+++|+.|++++|. ++. ..+..+|..+ .++++|++|++++|+
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~-~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL-DAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH-HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH-HHHHHHHHHHHhcCCCceEEEccCCc
Confidence 1 337778888888854 332 0000125555 457888888888864
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.11 E-value=2.2e-10 Score=119.53 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=66.2
Q ss_pred hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP 216 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp 216 (498)
+..+.+|+.|+|+.+.-.. + ..+..+++|+.|+++++....+| .+. .+++|+.|+|++| .+..+|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~----------~-~~l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~N-~l~~l~ 125 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTD----------I-KPLTNLKNLGWLFLDENKIKDLS-SLK--DLKKLKSLSLEHN-GISDIN 125 (605)
T ss_dssp GGGCTTCCEEECTTSCCCC----------C-GGGGGCTTCCEEECCSSCCCCCT-TST--TCTTCCEEECTTS-CCCCCG
T ss_pred HccCCCCCEEEeeCCCCCC----------C-hhhccCCCCCEEECcCCCCCCCh-hhc--cCCCCCEEEecCC-CCCCCc
Confidence 4556666666665553100 0 01344466666666666655554 233 3666666666664 344555
Q ss_pred CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
.++.+++|+.|+|++| .+..++ . +..+++|+.|+++++ .+....+ +..+++|+.|+|++|
T Consensus 126 ~l~~l~~L~~L~Ls~N-~l~~l~-~------l~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNN-KITDIT-V------LSRLTKLDTLSLEDN-QISDIVP-------LAGLTKLQNLYLSKN 185 (605)
T ss_dssp GGGGCTTCSEEECCSS-CCCCCG-G------GGSCTTCSEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS
T ss_pred cccCCCccCEEECCCC-ccCCch-h------hcccCCCCEEECcCC-cCCCchh-------hccCCCCCEEECcCC
Confidence 5666666666666664 344431 1 123666666666655 3333222 122666666666665
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.10 E-value=1.5e-09 Score=112.09 Aligned_cols=175 Identities=19% Similarity=0.179 Sum_probs=103.8
Q ss_pred CCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322 199 SKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH 277 (498)
Q Consensus 199 ~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 277 (498)
.+|+.|++++| .++.+|. + +++|++|+++++ .++.+| . .+++|+.|+++++ .++.+.. .
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-~--------~l~~L~~L~Ls~N-~l~~ip~--l---- 118 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP-E--------LPASLEYLDACDN-RLSTLPE--L---- 118 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC-C--------CCTTCCEEECCSS-CCSCCCC--C----
T ss_pred CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc-c--------ccCCCCEEEccCC-CCCCcch--h----
Confidence 37889999886 5667886 5 378899988885 466665 1 2567777777665 3333221 0
Q ss_pred ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccE
Q 048322 278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSS 357 (498)
Q Consensus 278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 357 (498)
..+|+.|++++| .++ .+|. .+++|+.|++++|....++. .+++|+.|++++|
T Consensus 119 ---~~~L~~L~Ls~N-~l~-~lp~--------------------~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N- 170 (571)
T 3cvr_A 119 ---PASLKHLDVDNN-QLT-MLPE--------------------LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNN- 170 (571)
T ss_dssp ---CTTCCEEECCSS-CCS-CCCC--------------------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-
T ss_pred ---hcCCCEEECCCC-cCC-CCCC--------------------cCccccEEeCCCCccCcCCC--cCCCcCEEECCCC-
Confidence 126666666665 343 2331 24556666666655444333 3455555555544
Q ss_pred eeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCc-------C
Q 048322 358 LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSL-------Q 430 (498)
Q Consensus 358 l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L-------~ 430 (498)
.+..+|. + .++|+.|+++++ .++.+ |. +.. +| +
T Consensus 171 --------------~L~~lp~-l---------------~~~L~~L~Ls~N-~L~~l------p~-~~~--~L~~~~~~L~ 210 (571)
T 3cvr_A 171 --------------QLTFLPE-L---------------PESLEALDVSTN-LLESL------PA-VPV--RNHHSEETEI 210 (571)
T ss_dssp --------------CCSCCCC-C---------------CTTCCEEECCSS-CCSSC------CC-CC----------CCE
T ss_pred --------------CCCCcch-h---------------hCCCCEEECcCC-CCCch------hh-HHH--hhhcccccce
Confidence 2222222 1 034677777664 44433 44 332 55 9
Q ss_pred eEeeecCCCCCcCCCC-CccccccceeeccCch
Q 048322 431 SLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPR 462 (498)
Q Consensus 431 ~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~ 462 (498)
+|++++| .++.+|.. ...++|+.|++++|+-
T Consensus 211 ~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 211 FFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 9999985 78899975 3468999999999873
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=2.9e-10 Score=101.29 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=100.0
Q ss_pred CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeee
Q 048322 281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDM 360 (498)
Q Consensus 281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 360 (498)
+++|+.|++++| .++ .+| .+..+++|++|++++|....++....+++|++|++++|.+..
T Consensus 43 l~~L~~L~l~~n-~i~-~l~------------------~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~ 102 (197)
T 4ezg_A 43 MNSLTYITLANI-NVT-DLT------------------GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102 (197)
T ss_dssp HHTCCEEEEESS-CCS-CCT------------------TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBG
T ss_pred cCCccEEeccCC-Ccc-ChH------------------HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCc
Confidence 788999999887 443 444 234567899999999966556666678999999998874432
Q ss_pred ecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeE
Q 048322 361 IGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSL 432 (498)
Q Consensus 361 ~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L 432 (498)
.... .+ ..+++|+.|++++| .+..+++|+.|++++|..++.+ | .+..+++|++|
T Consensus 103 ~~~~----------~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~------~-~l~~l~~L~~L 164 (197)
T 4ezg_A 103 DKIP----------NL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI------M-PLKTLPELKSL 164 (197)
T ss_dssp GGSC----------CC-TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC------G-GGGGCSSCCEE
T ss_pred ccCh----------hh-cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc------H-hhcCCCCCCEE
Confidence 1111 11 23478888888888 2456788999999887655543 4 57788889999
Q ss_pred eeecCCCCCcCCCCCccccccceeeccCc
Q 048322 433 KIWNCPNLTLFPEVGLPSSLLDLYVNNCP 461 (498)
Q Consensus 433 ~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 461 (498)
++++| .+..++.....++|+.|++++++
T Consensus 165 ~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 165 NIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred ECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 99886 56666644445788888888764
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.05 E-value=1.5e-09 Score=98.98 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=81.3
Q ss_pred CceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 176 IKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 176 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
.+.++.++.+...+|..+ .++|++|+|++|. +..+ |. ++.+++|++|+++++ .++.++...+. .+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-----~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI----PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFD-----SLTQ 89 (229)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTT
T ss_pred CCEeEccCCCcCccCCCC----CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcc-----cCCC
Confidence 455666666666666544 2567777777753 4444 33 667777777777764 35666554433 3666
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE 333 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~ 333 (498)
|+.|+++++ .++.+.+..... +++|++|+++++ .++ .+|. .+..+++|+.|++++
T Consensus 90 L~~L~Ls~N-~l~~l~~~~~~~-----l~~L~~L~Ls~N-~l~-~lp~-----------------~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 90 LTVLDLGTN-QLTVLPSAVFDR-----LVHLKELFMCCN-KLT-ELPR-----------------GIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-SCCT-----------------TGGGCTTCSEEECCS
T ss_pred cCEEECCCC-cCCccChhHhCc-----chhhCeEeccCC-ccc-ccCc-----------------ccccCCCCCEEECCC
Confidence 777777665 444443222222 667777777766 443 5554 233456666666666
Q ss_pred CCcceecC--CCCCCCccEEEEecc
Q 048322 334 CKELVCRT--PIDSKLIKFMTISNS 356 (498)
Q Consensus 334 ~~~~~~~~--~~~~~~L~~L~l~~~ 356 (498)
|....++. ...+++|+.|++++|
T Consensus 145 N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 65444332 222455555555554
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.05 E-value=2.3e-09 Score=97.18 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=83.6
Q ss_pred ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
+.+++++++...+|..+. ++|+.|+++++ .+..+|+ ++.+++|++|+++++ .+..++...+. .+++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~----~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~-----~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP----ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ-----GLRSL 82 (220)
T ss_dssp TEEECTTSCCSSCCSSCC----TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTT-----TCSSC
T ss_pred CEEEcCCCCcCcCCCccC----cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhh-----CCcCC
Confidence 456666666666776443 56777777774 4555553 677777777777774 45555433332 36677
Q ss_pred ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322 255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC 334 (498)
Q Consensus 255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~ 334 (498)
++|+++++ .++.+.++.... +++|++|+++++ .+++..|. .+..+++|+.|++++|
T Consensus 83 ~~L~Ls~N-~l~~l~~~~f~~-----l~~L~~L~L~~N-~l~~~~~~-----------------~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 83 NSLVLYGN-KITELPKSLFEG-----LFSLQLLLLNAN-KINCLRVD-----------------AFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCCCCCTT-----------------TTTTCTTCCEEECCSS
T ss_pred CEEECCCC-cCCccCHhHccC-----CCCCCEEECCCC-CCCEeCHH-----------------HcCCCCCCCEEECCCC
Confidence 77777665 344443322222 677777777766 34312222 3445666777777766
Q ss_pred CcceecC--CCCCCCccEEEEeccE
Q 048322 335 KELVCRT--PIDSKLIKFMTISNSS 357 (498)
Q Consensus 335 ~~~~~~~--~~~~~~L~~L~l~~~~ 357 (498)
....++. ...+++|+.|++++|+
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6554332 2235556666665553
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.04 E-value=1.9e-09 Score=96.73 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=57.8
Q ss_pred ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
+.++.++++...+|..+ .++|++|++++| .+..+|+ ++.+++|++|+++++ .++.++...+. .+++|
T Consensus 10 ~~v~c~~~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI----PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFN-----KLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT-----TCTTC
T ss_pred CEEEecCCCccCCCCCC----CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcC-----CCCCc
Confidence 45566666666666544 356778888775 4555554 667777777777774 45555554332 36666
Q ss_pred ceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
++|+++++ .++.+.+.... .+++|++|+++++
T Consensus 79 ~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~L~~N 110 (208)
T 2o6s_A 79 TYLNLSTN-QLQSLPNGVFD-----KLTQLKELALNTN 110 (208)
T ss_dssp CEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS
T ss_pred CEEECCCC-cCCccCHhHhc-----CccCCCEEEcCCC
Confidence 66666654 33333222111 2666666666665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.01 E-value=3.9e-09 Score=95.65 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=92.8
Q ss_pred ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC-C--CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP-S--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp-~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
+.++++++....+|..+. ..+++|++++| .+..++ . ++.+++|++|+++++ .++.++...+. .+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~----~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-----~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP----QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE-----GASG 82 (220)
T ss_dssp TEEECCSSCCSSCCSCCC----TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT-----TCTT
T ss_pred CEeEeCCCCcccCccCCC----CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC-----CCCC
Confidence 577788877777777553 45678888885 455553 2 677888888888874 47777654333 4778
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE 333 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~ 333 (498)
|++|+++++ .++.+.++.... +++|++|+++++ .+++..|. .+..+++|+.|++++
T Consensus 83 L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~~-----------------~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 83 VNEILLTSN-RLENVQHKMFKG-----LESLKTLMLRSN-RITCVGND-----------------SFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECCSS-CCCCCCGGGGTT-----CSSCCEEECTTS-CCCCBCTT-----------------SSTTCTTCSEEECTT
T ss_pred CCEEECCCC-ccCccCHhHhcC-----CcCCCEEECCCC-cCCeECHh-----------------HcCCCccCCEEECCC
Confidence 888888766 444444322222 778888888877 44423333 455567777788777
Q ss_pred CCcceec--CCCCCCCccEEEEeccEe
Q 048322 334 CKELVCR--TPIDSKLIKFMTISNSSL 358 (498)
Q Consensus 334 ~~~~~~~--~~~~~~~L~~L~l~~~~l 358 (498)
|....+. ....+++|+.|++++|++
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 7655542 223356666666666533
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.00 E-value=3.5e-09 Score=95.05 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=99.3
Q ss_pred cEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCC
Q 048322 202 EFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIF 281 (498)
Q Consensus 202 ~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 281 (498)
+.++.++ ..++.+|. +..++|++|+++++ .++.++...++ .+++|++|+++++ .++.+.+..... +
T Consensus 10 ~~v~c~~-~~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l~~~~~~~~~~-----l 75 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPT-GIPAQTTYLDLETN-SLKSLPNGVFD-----ELTSLTQLYLGGN-KLQSLPNGVFNK-----L 75 (208)
T ss_dssp TEEECCS-SCCSSCCS-CCCTTCSEEECCSS-CCCCCCTTTTT-----TCTTCSEEECCSS-CCCCCCTTTTTT-----C
T ss_pred CEEEecC-CCccCCCC-CCCCCCcEEEcCCC-ccCcCChhhhc-----ccccCcEEECCCC-ccCccChhhcCC-----C
Confidence 3455554 35666664 33568999999985 57777765543 5889999999876 555544332222 8
Q ss_pred CccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEeccEee
Q 048322 282 PRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSLD 359 (498)
Q Consensus 282 ~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~ 359 (498)
++|++|++++| .++ .+|.. .+..+++|++|++++|....++. ...+++|+.|++++|.
T Consensus 76 ~~L~~L~Ls~n-~l~-~~~~~----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-- 135 (208)
T 2o6s_A 76 TSLTYLNLSTN-QLQ-SLPNG----------------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-- 135 (208)
T ss_dssp TTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred CCcCEEECCCC-cCC-ccCHh----------------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--
Confidence 89999999887 454 44431 35567889999998887665443 3447888888887762
Q ss_pred eecCCCCccCCCCCCcCCC----CCCCCCeEEecCC-CCCCCCCccEEEEcC
Q 048322 360 MIGCKGMLYDSQAGSSLPK----PMTTTNVLEFGKL-LEPGFQILETLVIGN 406 (498)
Q Consensus 360 ~~~~~~l~~~~~~l~~lp~----~l~~L~~L~i~~~-~~~~lp~L~~L~l~~ 406 (498)
+..+|. .+++|+.|++++| ..+.+|.|+.|.++.
T Consensus 136 -------------l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 136 -------------LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174 (208)
T ss_dssp -------------CSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHH
T ss_pred -------------cceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHH
Confidence 222322 2355666666665 233444455555544
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=2.7e-09 Score=99.50 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=83.9
Q ss_pred CCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 173 HKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
+++|++|+++++....+| .+. .+++|++|++++| .+..+|+++.+++|++|+++++ .++.++.. . .+
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~--~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N-~l~~l~~~-------~-~~ 106 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQ--FFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRN-RLKNLNGI-------P-SA 106 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGG--GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSS-CCSCCTTC-------C-CS
T ss_pred cCcCcEEECcCCCcccch-HHh--hCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCC-ccCCcCcc-------c-cC
Confidence 366777777777666666 344 4677777777775 4566666777777777777764 35444421 1 15
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD 332 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~ 332 (498)
+|+.|+++++ .++.+. .+..+++|+.|++++| .++ .+| .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N-~l~~~~-------~l~~l~~L~~L~Ls~N-~i~-~~~------------------~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDTD-------SLIHLKNLEILSIRNN-KLK-SIV------------------MLGFLSKLEVLDLH 158 (263)
T ss_dssp SCCEEECCSS-CCSBSG-------GGTTCTTCCEEECTTS-CCC-BCG------------------GGGGCTTCCEEECT
T ss_pred cccEEEccCC-ccCCCh-------hhcCcccccEEECCCC-cCC-CCh------------------HHccCCCCCEEECC
Confidence 6666766655 333321 1222677777777766 333 222 23345667777777
Q ss_pred CCCcceecCCCCCCCccEEEEeccE
Q 048322 333 ECKELVCRTPIDSKLIKFMTISNSS 357 (498)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~ 357 (498)
+|..........+++|+.|++++|.
T Consensus 159 ~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 159 GNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CCcCcchHHhccCCCCCEEeCCCCc
Confidence 7665555444446666666666653
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.99 E-value=4.7e-11 Score=118.31 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=145.6
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC----Ccccc-----CCCCCCccEEe
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF----PLWIG-----DPLFSKIEFLE 205 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~----p~~~~-----~~~l~~L~~L~ 205 (498)
..+...++|+.|+|+.+.- .......+...+..+++|++|+++++....+ |..+. -..+++|++|+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHHCSCCCEEECTTSEE-----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHhcCCCccEEECCCCCC-----CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 4566788999999977641 1222334556677789999999998765533 33331 01578999999
Q ss_pred EeCCCCCC----CCCC-CCCccccceeeccccccceecCccccCCCCCCCC---------CCCceeeccCCCcccccc-c
Q 048322 206 LENCNNCV----SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF---------PSLKILRFENLPEWWHWD-T 270 (498)
Q Consensus 206 l~~c~~~~----~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~---------~~L~~L~l~~~~~l~~~~-~ 270 (498)
|++|..-. .+|. +..+++|++|++++|. +...+...+.. .+..+ ++|++|+++++. +.... +
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 177 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIAR-ALQELAVNKKAKNAPPLRSIICGRNR-LENGSMK 177 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHH-HHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHH-HHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHH
Confidence 99975333 2554 7788999999999874 43222111110 00112 899999998873 32111 1
Q ss_pred cccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcc-----eec-CCCC
Q 048322 271 DIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKEL-----VCR-TPID 344 (498)
Q Consensus 271 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~~~-~~~~ 344 (498)
... ..+..+++|++|++++| .+.. ..+..++ ...+..+++|++|++++|... .++ ....
T Consensus 178 ~l~--~~l~~~~~L~~L~L~~n-~l~~------~g~~~l~------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 178 EWA--KTFQSHRLLHTVKMVQN-GIRP------EGIEHLL------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp HHH--HHHHHCTTCCEEECCSS-CCCH------HHHHHHH------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred HHH--HHHHhCCCcCEEECcCC-CCCH------hHHHHHH------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 000 01123789999999988 3320 0011110 013445788999999988753 122 2345
Q ss_pred CCCccEEEEeccEeeeecCCCCccCCCCCCcCCC-----CCCCCCeEEecCCCC-------------CCCCCccEEEEcC
Q 048322 345 SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK-----PMTTTNVLEFGKLLE-------------PGFQILETLVIGN 406 (498)
Q Consensus 345 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~-----~l~~L~~L~i~~~~~-------------~~lp~L~~L~l~~ 406 (498)
+++|++|++++|.+...+.. .+|. ..++|+.|++++|.+ ..+|+|+.|++++
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~----------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAA----------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHH----------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCcCEEECCCCCCchhhHH----------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 78899999988744322110 0111 247899999999822 2378899999988
Q ss_pred CC
Q 048322 407 SE 408 (498)
Q Consensus 407 c~ 408 (498)
|+
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 64
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=3.5e-09 Score=103.69 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=33.1
Q ss_pred eEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CC-CccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 178 KVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LG-LLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 178 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
.+++++++...+|..+. .+++.|+|++| .++.+++ +. .+++|++|+++++ .+..++...+. .+++|
T Consensus 22 ~l~c~~~~l~~iP~~~~----~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-----~l~~L 90 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP----SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV-----PVPNL 90 (361)
T ss_dssp EEECCSSCCSSCCSSCC----TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT-----TCTTC
T ss_pred EEEeCCCCcCccCccCC----CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhcc-----CCCCC
Confidence 44444444444444332 23455555553 3344433 33 4555555555542 34444433222 34555
Q ss_pred ceeeccCC
Q 048322 255 KILRFENL 262 (498)
Q Consensus 255 ~~L~l~~~ 262 (498)
++|+++++
T Consensus 91 ~~L~Ls~N 98 (361)
T 2xot_A 91 RYLDLSSN 98 (361)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=4.9e-10 Score=104.61 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=87.7
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
.++..+.+.++....++. +. .+++|++|++++| .+..+|.++.+++|++|+++++ .+..++. + ..+++
T Consensus 19 ~~l~~l~l~~~~i~~~~~-~~--~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l------~~l~~ 86 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVS-QK--ELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHN-QISDLSP-L------KDLTK 86 (263)
T ss_dssp HHHHHHHHTCSCTTSEEC-HH--HHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-G------TTCSS
T ss_pred HHHHHHHhcCCCcccccc-hh--hcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCC-ccCCChh-h------ccCCC
Confidence 445555566665555552 33 4788888888886 5777777888888888888875 4666554 2 24777
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE 333 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~ 333 (498)
|+.|+++++ .++.+.. +. .++|+.|++++| .++ .+| .+..+++|+.|++++
T Consensus 87 L~~L~L~~N-~l~~l~~-------~~-~~~L~~L~L~~N-~l~-~~~------------------~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 87 LEELSVNRN-RLKNLNG-------IP-SACLSRLFLDNN-ELR-DTD------------------SLIHLKNLEILSIRN 137 (263)
T ss_dssp CCEEECCSS-CCSCCTT-------CC-CSSCCEEECCSS-CCS-BSG------------------GGTTCTTCCEEECTT
T ss_pred CCEEECCCC-ccCCcCc-------cc-cCcccEEEccCC-ccC-CCh------------------hhcCcccccEEECCC
Confidence 777777765 3333321 01 266777777766 333 222 344566777777777
Q ss_pred CCcceecCCCCCCCccEEEEecc
Q 048322 334 CKELVCRTPIDSKLIKFMTISNS 356 (498)
Q Consensus 334 ~~~~~~~~~~~~~~L~~L~l~~~ 356 (498)
|....++....+++|+.|++++|
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTS
T ss_pred CcCCCChHHccCCCCCEEECCCC
Confidence 76555554445666666666665
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.92 E-value=6.2e-09 Score=94.28 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
++|+.|+++++....+|. .+. .+++|++|+|++| .+..+ |. ++.+++|++|+++++ .++.++...+. .
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~-----~ 102 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFE-----G 102 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred cCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHcc-----C
Confidence 567777777777666554 333 4677777777775 34444 33 777777777777774 46666665443 4
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
+++|+.|+++++ .+..+.++... .+++|+.|+++++ .++ .+|.. .+..+++|+.|+
T Consensus 103 l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~-~~~~~----------------~~~~l~~L~~L~ 158 (220)
T 2v9t_B 103 LFSLQLLLLNAN-KINCLRVDAFQ-----DLHNLNLLSLYDN-KLQ-TIAKG----------------TFSPLRAIQTMH 158 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCS-CCCTT----------------TTTTCTTCCEEE
T ss_pred CCCCCEEECCCC-CCCEeCHHHcC-----CCCCCCEEECCCC-cCC-EECHH----------------HHhCCCCCCEEE
Confidence 777777777765 44444332222 2677788888776 343 33321 344567777777
Q ss_pred ecCCCc
Q 048322 331 VDECKE 336 (498)
Q Consensus 331 l~~~~~ 336 (498)
+++|+.
T Consensus 159 L~~N~~ 164 (220)
T 2v9t_B 159 LAQNPF 164 (220)
T ss_dssp CCSSCE
T ss_pred eCCCCc
Confidence 777654
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=3.3e-09 Score=91.64 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCceEEEeecCCC--CCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322 174 KCIKKVAIRNYGGA--RFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL 232 (498)
Q Consensus 174 ~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~ 232 (498)
++|++|+++++... .+|..+. .+++|++|++++|. +..++.++.+++|++|++++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA--EFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG--GGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESC
T ss_pred ccCCEEECCCCCCChhhHHHHHH--hCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCC
Confidence 55555555555544 4555443 35555666665543 444444555555555555554
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.87 E-value=5.9e-09 Score=95.10 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=97.8
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--C
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--L 218 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i 218 (498)
.+|+.|+|+++.-.. .....+..+++|++|+++++....+|..... .+++|++|+|++| .++.+|+ +
T Consensus 40 ~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITK---------LEPGVFDSLINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLGTN-QLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCEEEcCCCccCc---------cCHHHhhCccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECCCC-cCCccChhHh
Confidence 789999998875211 1123456678999999999998888754322 5899999999996 6777776 7
Q ss_pred CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322 219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
+.+++|++|+++++ .+..+|..+. .+++|+.|+++++ .+..+.++... .+++|+.|++.+++
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~~~------~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRGIE------RLTHLTHLALDQN-QLKSIPHGAFD-----RLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTTGG------GCTTCSEEECCSS-CCCCCCTTTTT-----TCTTCCEEECTTSC
T ss_pred CcchhhCeEeccCC-cccccCcccc------cCCCCCEEECCCC-cCCccCHHHHh-----CCCCCCEEEeeCCC
Confidence 88999999999985 5888887664 4899999999886 55655433223 38999999999885
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.87 E-value=3.5e-11 Score=118.09 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=22.9
Q ss_pred CCCCCccEEEEcCCC--CCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322 394 PGFQILETLVIGNSE--QLKPWRQGRGLSMGFQRLTSLQSLKIWNCP 438 (498)
Q Consensus 394 ~~lp~L~~L~l~~c~--~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~ 438 (498)
..+++|+.|++++|. .++. ..+..++..+..+++|++|++++++
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~-~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSK-EQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCH-HHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCCccccCH-HHHHHHHHHhccCCceEEEecCCCc
Confidence 344556777776653 1110 0011124455667777777777753
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=6.7e-09 Score=101.70 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=107.0
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
.++++|+++++....+|.......+++|++|+|++| .+..+++ ++.+++|++|+++++ .++.++...+. .+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l 111 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS-----DL 111 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC-----CC
Confidence 568899999988877765433224889999999986 5666664 888999999999985 58888776554 58
Q ss_pred CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEe
Q 048322 252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEV 331 (498)
Q Consensus 252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l 331 (498)
++|+.|+++++ .+..+.+..... +++|+.|++++| .++ .+|..+ ...+..+++|+.|++
T Consensus 112 ~~L~~L~L~~N-~i~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~l~~~~-------------~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 112 QALEVLLLYNN-HIVVVDRNAFED-----MAQLQKLYLSQN-QIS-RFPVEL-------------IKDGNKLPKLMLLDL 170 (361)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTT-----CTTCCEEECCSS-CCC-SCCGGG-------------TC----CTTCCEEEC
T ss_pred cCCCEEECCCC-cccEECHHHhCC-----cccCCEEECCCC-cCC-eeCHHH-------------hcCcccCCcCCEEEC
Confidence 89999999876 445444332222 889999999987 554 555410 001134788889999
Q ss_pred cCCCcceecC--CCCCCC--ccEEEEeccEee
Q 048322 332 DECKELVCRT--PIDSKL--IKFMTISNSSLD 359 (498)
Q Consensus 332 ~~~~~~~~~~--~~~~~~--L~~L~l~~~~l~ 359 (498)
++|....++. ...++. ++.|++.+|++.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8887655331 122444 477888887553
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.83 E-value=3.9e-12 Score=131.89 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=19.2
Q ss_pred CCCccccEEEecCCCcceecCCCCCCCccEEEEecc
Q 048322 321 SSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNS 356 (498)
Q Consensus 321 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 356 (498)
..+++|+.|++++|....++....+++|+.|++++|
T Consensus 483 ~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 483 AALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 345555666666555544444444555555555554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.81 E-value=2.3e-08 Score=90.47 Aligned_cols=131 Identities=11% Similarity=0.130 Sum_probs=89.8
Q ss_pred CCCceEEEeecCCCCCCc--cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPL--WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
..+++|+++++....++. .+. .+++|++|++++| .++.+++ ++.+++|++|+++++ .+..++...++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~----- 102 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFK----- 102 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGT-----
T ss_pred CCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhc-----
Confidence 467888888888776632 244 5788888888885 4666654 788888888888884 46777665443
Q ss_pred CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322 250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL 329 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L 329 (498)
.+++|++|+++++ .++.+.+..... +++|+.|++++| .+++..|. .+..+++|+.|
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~~~~~-----------------~~~~l~~L~~L 158 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFIG-----LSSVRLLSLYDN-QITTVAPG-----------------AFDTLHSLSTL 158 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSSTT-----CTTCSEEECTTS-CCCCBCTT-----------------TTTTCTTCCEE
T ss_pred CCcCCCEEECCCC-cCCeECHhHcCC-----CccCCEEECCCC-cCCEECHH-----------------HhcCCCCCCEE
Confidence 4888888888876 455544332222 788888888887 45423343 45567788888
Q ss_pred EecCCCcc
Q 048322 330 EVDECKEL 337 (498)
Q Consensus 330 ~l~~~~~~ 337 (498)
++++|+..
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 88887643
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.74 E-value=8.7e-09 Score=88.98 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=96.7
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
..++|+.|+++.+.-. ...+...+..+++|++|+++++....+ ..+. .+++|++|++++|.....+|.
T Consensus 22 ~~~~L~~L~l~~n~l~--------~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSN--------DGKIEGLTAEFVNLEFLSLINVGLISV-SNLP--KLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCB--------TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC--CCSSCCEEEEESCCCCSCCCHH
T ss_pred CcccCCEEECCCCCCC--------hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc--cCCCCCEEECcCCcCchHHHHH
Confidence 3578999999876521 012333445668999999999987777 4455 589999999999754444666
Q ss_pred CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCCccccccc---cccCCccccCCCccceeeeccCC
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLPEWWHWDT---DIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
++.+++|++|++++| .++.++. ..+ ..+++|+.|+++++ .+..+.. .. +..+++|+.|++.+|.
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l-----~~l~~L~~L~l~~N-~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTLEPL-----KKLECLKSLDLFNC-EVTNLNDYRESV-----FKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGGGGG-----SSCSCCCEEECCSS-GGGTSTTHHHHH-----HTTCSSCCEETTEETT
T ss_pred HhhCCCCCEEeccCC-ccCcchhHHHH-----hcCCCCCEEEeeCC-cCcchHHHHHHH-----HHhCccCcEecCCCCC
Confidence 566999999999996 5777652 222 35899999999887 4444432 12 2338999999999985
Q ss_pred CccccCCC
Q 048322 294 KLSGKLPE 301 (498)
Q Consensus 294 ~l~~~lp~ 301 (498)
. . .+|.
T Consensus 159 ~-~-~~~~ 164 (168)
T 2ell_A 159 D-Q-EAPD 164 (168)
T ss_dssp S-C-BCCS
T ss_pred h-h-hccc
Confidence 4 2 5554
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=9.3e-09 Score=89.59 Aligned_cols=138 Identities=14% Similarity=0.187 Sum_probs=92.9
Q ss_pred CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322 171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
.++.+|++|+++++....+|.... ..++|++|++++| .++.++.++.+++|++|+++++ .+..++..+++ .
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~--~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQ-----A 86 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCHHH-----H
T ss_pred CCcCCceEEEeeCCCCchhHHhhh--cCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcchhh-----c
Confidence 345788999999888877765433 3458999999986 5666777888999999999885 57788765543 4
Q ss_pred CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322 251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE 330 (498)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~ 330 (498)
+++|++|+++++ .+..+.. ...+..+++|+.|++++|+ +. .+|.. +.. .+..+++|+.|+
T Consensus 87 l~~L~~L~L~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N~-i~-~~~~~----~~~---------~~~~l~~L~~Ld 146 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRNP-VT-NKKHY----RLY---------VIYKVPQVRVLD 146 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSSG-GG-GSTTH----HHH---------HHHHCTTCSEET
T ss_pred CCCCCEEECCCC-cCCcchh----hHhhhcCCCCCEEEecCCC-CC-CcHhH----HHH---------HHHHCCccceeC
Confidence 889999999876 4444432 0112338899999999884 33 44431 111 122356777777
Q ss_pred ecCCCcc
Q 048322 331 VDECKEL 337 (498)
Q Consensus 331 l~~~~~~ 337 (498)
++++...
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 7776543
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.73 E-value=6.3e-08 Score=85.65 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=40.6
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
++|++|+++++....+|..+. .+++|++|+|++| .++.+++ ++.+++|++|+++++ .+..++...+. .+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~--~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~-----~l 101 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELS--NYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFD-----GL 101 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGG--GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT-----TC
T ss_pred CCCCEEECCCCcCchhHHHhh--cccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhC-----CC
Confidence 455556665555555554444 3555666665553 3444443 555555555555553 34444443222 24
Q ss_pred CCCceeeccCC
Q 048322 252 PSLKILRFENL 262 (498)
Q Consensus 252 ~~L~~L~l~~~ 262 (498)
++|+.|+++++
T Consensus 102 ~~L~~L~L~~N 112 (193)
T 2wfh_A 102 KSLRLLSLHGN 112 (193)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 55555555443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.73 E-value=6e-08 Score=85.73 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=42.9
Q ss_pred ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC---CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS---LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~---i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
+.+++++++...+|..+. .+|++|+++++ .+..+++ ++.+++|++|+++++ .++.++...++ .+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~----~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP----LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE-----GASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCC----TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT-----TCTT
T ss_pred CEEEcCCCCcCcCccCCC----CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC-----Cccc
Confidence 444555555445554332 24555555553 3333332 445555555555543 24433222221 2455
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
|++|+++++ .++.+.+..... +++|++|+++++
T Consensus 80 L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~L~~N 112 (192)
T 1w8a_A 80 IQELQLGEN-KIKEISNKMFLG-----LHQLKTLNLYDN 112 (192)
T ss_dssp CCEEECCSC-CCCEECSSSSTT-----CTTCCEEECCSS
T ss_pred CCEEECCCC-cCCccCHHHhcC-----CCCCCEEECCCC
Confidence 555555444 233332221111 455555555554
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.72 E-value=1.7e-10 Score=113.22 Aligned_cols=243 Identities=10% Similarity=-0.000 Sum_probs=137.6
Q ss_pred HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCC-CCceEEEeecCCCCC-CccccC---CCCCCccEEeEeCC
Q 048322 135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHK-CIKKVAIRNYGGARF-PLWIGD---PLFSKIEFLELENC 209 (498)
Q Consensus 135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~-p~~~~~---~~l~~L~~L~l~~c 209 (498)
+.+...++|+.|+|+++.- .......+.+.+..++ +|++|+++++..... +..+.. ...++|++|++++|
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNL-----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHTSCTTCCEEECTTSCG-----GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHhCCCCceEEEccCCCC-----ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3445566699999987752 0111223334455556 899999999876544 333331 01388999999997
Q ss_pred CCCCCCC-C-----CCCc-cccceeeccccccceecCccccCCCCCCC-CCCCceeeccCCCccccccccccCCccccCC
Q 048322 210 NNCVSLP-S-----LGLL-SSLKHLAVKGLKKLKSIESEVYGEGFSMP-FPSLKILRFENLPEWWHWDTDIKGNVHVDIF 281 (498)
Q Consensus 210 ~~~~~lp-~-----i~~l-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 281 (498)
. ++..+ . +..+ ++|++|++++|. ++..+...+.. .+.. .++|++|+++++ .+......... ..+..+
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-~~l~~~ 165 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQ-AFSNLPASITSLNLRGN-DLGIKSSDELI-QILAAI 165 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHH-HHTTSCTTCCEEECTTS-CGGGSCHHHHH-HHHHTS
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHH-HHHhCCCceeEEEccCC-cCCHHHHHHHH-HHHhcC
Confidence 5 44333 2 3334 789999999864 55554432210 1112 358999999887 33321100000 001114
Q ss_pred C-ccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCC-ccccEEEecCCCcce-----ecC-CCC-CCCccEEE
Q 048322 282 P-RLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSY-PRLCRLEVDECKELV-----CRT-PID-SKLIKFMT 352 (498)
Q Consensus 282 ~-~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l-~~L~~L~l~~~~~~~-----~~~-~~~-~~~L~~L~ 352 (498)
+ +|++|++++| .+++..+. .+.. .+... ++|++|++++|.... ++. ... .++|++|+
T Consensus 166 ~~~L~~L~Ls~n-~l~~~~~~---~l~~----------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 166 PANVNSLNLRGN-NLASKNCA---ELAK----------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHH---HHHH----------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred CccccEeeecCC-CCchhhHH---HHHH----------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 4 8999999988 44322111 1111 12223 488999999887544 111 111 46899999
Q ss_pred EeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC---------------CCCCCCCccEEEEcCCC
Q 048322 353 ISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL---------------LEPGFQILETLVIGNSE 408 (498)
Q Consensus 353 l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~---------------~~~~lp~L~~L~l~~c~ 408 (498)
+++|.+...+.. .+..+...+++|+.|++++| ....+++|+.|++++++
T Consensus 232 Ls~N~l~~~~~~-------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 232 LCLNCLHGPSLE-------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCSSCCCCCCHH-------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcCCCCCcHHHH-------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 988754432211 11112234478999999888 23456668888887754
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=4.9e-09 Score=88.59 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=75.0
Q ss_pred CCCCceEEEeecCCC--CCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccccccee-cCccccCCCCCC
Q 048322 173 HKCIKKVAIRNYGGA--RFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSM 249 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~ 249 (498)
+++|+.|+++++... .+|..+. .+++|++|++++| .+..++.++.+++|++|+++++. +.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~------ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD--EFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAE------ 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT--TCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHHHH------
T ss_pred CccCeEEEccCCcCChhHHHHHHh--hcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHHhh------
Confidence 477888888888776 6777665 5888999998886 56666668888889999888854 544 443222
Q ss_pred CCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCcc
Q 048322 250 PFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~ 296 (498)
.+++|++|+++++ .++.+. +... ..+++|++|++++| .++
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~~~~~~-----~~l~~L~~L~l~~N-~l~ 126 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLSTIEPL-----KKLENLKSLDLFNC-EVT 126 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHHHHGGG-----GGCTTCCEEECTTC-GGG
T ss_pred hCCCCCEEECCCC-cCCChHHHHHH-----hhCCCCCEEeCcCC-ccc
Confidence 3788888888876 344432 1222 23888999999888 444
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=8.3e-08 Score=84.87 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCC--
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPS-- 217 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~-- 217 (498)
.+++.|+|+.+.-. .+...+..+++|++|+++++....++.. +. .+++|++|+|++| .+..+|+
T Consensus 31 ~~l~~L~L~~n~i~----------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N-~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFT----------LVPKELSNYKHLTLIDLSNNRISTLSNQSFS--NMTQLLTLILSYN-RLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSCCC----------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCCBCCTTT
T ss_pred CCCCEEECCCCcCc----------hhHHHhhcccCCCEEECCCCcCCEeCHhHcc--CCCCCCEEECCCC-ccCEeCHHH
Confidence 47888888766421 1223455568888888888887777643 44 5788888888885 5666664
Q ss_pred CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL 262 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 262 (498)
++.+++|++|+++++ .+..++...+. .+++|+.|++.++
T Consensus 98 f~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N 136 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN-DISVVPEGAFN-----DLSALSHLAIGAN 136 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTTT-----TCTTCCEEECCSS
T ss_pred hCCCCCCCEEECCCC-CCCeeChhhhh-----cCccccEEEeCCC
Confidence 788888888888874 56666665443 3666666666554
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.68 E-value=1.3e-08 Score=108.77 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=100.1
Q ss_pred hhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCC
Q 048322 167 LDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGE 245 (498)
Q Consensus 167 l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~ 245 (498)
.+.+..+.+|+.|+++++....+|..++ .+++|++|+|++| .+..+|. ++.+++|++|+|+++ .+..+|..+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~- 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF--KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS- 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG--GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG-
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc--CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC-
Confidence 3445667899999999999999998877 5999999999996 5668997 999999999999996 47788876654
Q ss_pred CCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHH--H--HHhcccccccCC
Q 048322 246 GFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEI--L--VSKCEKLVVSLS 321 (498)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~--L--i~~~~~l~~~~~ 321 (498)
+++|++|+++++ .+..++.. .+ .+++|+.|+|++| .+.+.+|..+..+.. + ....+.+...+|
T Consensus 292 -----l~~L~~L~L~~N-~l~~lp~~-~~-----~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 -----CFQLKYFYFFDN-MVTTLPWE-FG-----NLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp -----GTTCSEEECCSS-CCCCCCSS-TT-----SCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred -----CCCCCEEECCCC-CCCccChh-hh-----cCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 899999999987 55554432 23 3899999999998 455566665544322 2 122233433333
Q ss_pred CCccccEEEecCC
Q 048322 322 SYPRLCRLEVDEC 334 (498)
Q Consensus 322 ~l~~L~~L~l~~~ 334 (498)
..|..|+++.+
T Consensus 359 --~~l~~l~l~~n 369 (727)
T 4b8c_D 359 --HERRFIEINTD 369 (727)
T ss_dssp --CC---------
T ss_pred --cccceeEeecc
Confidence 46677777665
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=3.5e-07 Score=88.15 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=41.5
Q ss_pred CCCCeEEecCC-------CCCCCCCcc-EEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--cc
Q 048322 381 TTTNVLEFGKL-------LEPGFQILE-TLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PS 450 (498)
Q Consensus 381 ~~L~~L~i~~~-------~~~~lp~L~-~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~ 450 (498)
.+|+.|.+.++ .+.++++|+ .+.+.+ +++.+. +..+.++++|++|++.+ +.++.++...+ .+
T Consensus 250 ~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 250 KYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATG-DKITTLGDELFGNGV 321 (329)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTC
T ss_pred CCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCC-CccCccchhhhcCCc
Confidence 44555555544 455667787 888865 444331 45677888888888866 47777776433 24
Q ss_pred ccccee
Q 048322 451 SLLDLY 456 (498)
Q Consensus 451 sL~~L~ 456 (498)
+|+.++
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 555443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.62 E-value=3.4e-07 Score=79.61 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=56.1
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 251 (498)
++|++|+++++....+|..... .+++|++|++++| .++.+|+ ++.+++|++|+++++ .++.++...++ .+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l 99 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD-----KL 99 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TC
T ss_pred CCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhh-----CC
Confidence 4666666666665555543211 3566666666664 4455554 456666666666663 35555544332 35
Q ss_pred CCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
++|++|+++++ .++.+.+..... +++|++|+++++
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~-----l~~L~~L~l~~N 134 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDR-----LTSLQKIWLHTN 134 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTT-----CTTCCEEECCSS
T ss_pred cccCEEECcCC-cceEeCHHHhcC-----CcccCEEEecCC
Confidence 66666666554 334333222122 566666666655
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.58 E-value=1.2e-08 Score=109.16 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=15.1
Q ss_pred CCCccEEeEeCCCCCCCCCC-CCCccccceeeccc
Q 048322 198 FSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKG 231 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~ 231 (498)
+++|+.|+|++| .+..+|. ++.+++|++|+|++
T Consensus 223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~ 256 (727)
T 4b8c_D 223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG 256 (727)
T ss_dssp CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT
T ss_pred CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC
Confidence 444555555443 2334443 44444455555544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.57 E-value=1.3e-08 Score=85.98 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=91.2
Q ss_pred ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322 139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS- 217 (498)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~- 217 (498)
...+++.|+++.+.-. ...+...+..+++|++|+++++....+ ..+. .+++|++|++++|.....+|.
T Consensus 15 ~~~~l~~L~l~~n~l~--------~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSN--------EGKLEGLTDEFEELEFLSTINVGLTSI-ANLP--KLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCB--------TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCC--CCTTCCEEECCSSCCCSCTHHH
T ss_pred CCccCeEEEccCCcCC--------hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhh--cCCCCCEEECCCCcccchHHHH
Confidence 4578999999776421 012344456779999999999987777 4455 589999999999754444776
Q ss_pred CCCccccceeeccccccceecC--ccccCCCCCCCCCCCceeeccCCCccccccc---cccCCccccCCCccceeeecc
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIE--SEVYGEGFSMPFPSLKILRFENLPEWWHWDT---DIKGNVHVDIFPRLQELSVVK 291 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~~l~~L~~L~l~~ 291 (498)
++.+++|++|+++++. ++.++ ..+ ..+++|++|+++++ .+..+.+ .. +..+++|+.|++++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~------~~l~~L~~L~l~~N-~l~~~~~~~~~~-----~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPL------KKLENLKSLDLFNC-EVTNLNDYRENV-----FKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGG------GGCTTCCEEECTTC-GGGGSTTHHHHH-----HHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHH------hhCCCCCEEeCcCC-cccchHHHHHHH-----HHHCCCcccccCCC
Confidence 6679999999999864 66654 333 24899999999987 4444432 12 22388999998763
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.56 E-value=3e-07 Score=81.19 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=81.3
Q ss_pred CCCceEEEeecCCCCCCcc--ccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLW--IGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~--~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 249 (498)
.++++|+++++....+|.. +. .+++|++|+|++|. ++.+ |. ++.+++|++|+++++ .++.++...+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~----- 99 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFL----- 99 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSST-----
T ss_pred CCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhc-----
Confidence 4899999999988877653 55 68999999999964 5555 54 899999999999985 57777766443
Q ss_pred CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322 250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
.+++|++|+++++ .+....+..... +++|++|++++++
T Consensus 100 ~l~~L~~L~L~~N-~l~~~~~~~~~~-----l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 100 GLHQLKTLNLYDN-QISCVMPGSFEH-----LNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECCSS-CCCEECTTSSTT-----CTTCCEEECTTCC
T ss_pred CCCCCCEEECCCC-cCCeeCHHHhhc-----CCCCCEEEeCCCC
Confidence 5899999999887 555554333333 8999999999884
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.55 E-value=3.8e-07 Score=79.24 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--C
Q 048322 141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--L 218 (498)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i 218 (498)
.+|+.|+++.+.-. .. ....+..+++|++|+++++....+|..... .+++|++|++++| .++.+|+ +
T Consensus 28 ~~l~~L~l~~n~l~-~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SL--------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLHEN-KLQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCC-CC--------CTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcEEEeCCCccc-Ee--------CHHHhcCcccccEEECCCCcceEeChhHcc-CCCccCEEECCCC-CccccCHHHh
Confidence 57888888766421 00 012234567888888888887777654321 5788888888885 5666665 6
Q ss_pred CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322 219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL 262 (498)
Q Consensus 219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 262 (498)
+.+++|++|+++++ .++.++...+. .+++|++|++.++
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N 134 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVPDGIFD-----RLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTT-----TCTTCCEEECCSS
T ss_pred hCCcccCEEECcCC-cceEeCHHHhc-----CCcccCEEEecCC
Confidence 77888888888875 56777765443 4788888888766
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=1.2e-07 Score=98.31 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=83.6
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
..|++|+++++....+|. ++ .+++|+.|+|++| .++.+|. ++.+++|+.|+++++ .++.+| .+. .++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~------~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVA------NLP 508 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGT------TCS
T ss_pred cCceEEEecCCCCCCCcC-cc--ccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccC------CCC
Confidence 468999999999888887 66 5899999999996 5678887 999999999999985 577776 333 489
Q ss_pred CCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCccccCCC
Q 048322 253 SLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPE 301 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~ 301 (498)
+|+.|+++++ .++.+. +... ..+++|+.|++++| .++ .+|.
T Consensus 509 ~L~~L~Ls~N-~l~~~~~p~~l-----~~l~~L~~L~L~~N-~l~-~~~~ 550 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSAAIQPL-----VSCPRLVLLNLQGN-SLC-QEEG 550 (567)
T ss_dssp SCCEEECCSS-CCCSSSTTGGG-----GGCTTCCEEECTTS-GGG-GSSS
T ss_pred CCcEEECCCC-CCCCCCCcHHH-----hcCCCCCEEEecCC-cCC-CCcc
Confidence 9999999887 555553 3322 23899999999988 454 4443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=9.9e-08 Score=82.98 Aligned_cols=128 Identities=14% Similarity=0.144 Sum_probs=84.8
Q ss_pred CCCCccEEeEeCCCCCCCCCCCCCcc-ccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC
Q 048322 197 LFSKIEFLELENCNNCVSLPSLGLLS-SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN 275 (498)
Q Consensus 197 ~l~~L~~L~l~~c~~~~~lp~i~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 275 (498)
.+.+|+.|++++| .+..+|.+..+. +|++|+++++ .++.+ ..+ ..+++|++|+++++ .++.+.++...
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l------~~l~~L~~L~Ls~N-~l~~~~~~~~~- 85 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGF------PLLRRLKTLLVNNN-RICRIGEGLDQ- 85 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCC------CCCSSCCEEECCSS-CCCEECSCHHH-
T ss_pred CcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc-ccc------ccCCCCCEEECCCC-cccccCcchhh-
Confidence 3788999999997 667888776665 9999999986 46666 222 34888888888876 45544332212
Q ss_pred ccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC-----CCCCCCccE
Q 048322 276 VHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT-----PIDSKLIKF 350 (498)
Q Consensus 276 ~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~L~~ 350 (498)
.+++|+.|++++| .+. .+|. ...+..+++|+.|++++|.....+. ...+++|+.
T Consensus 86 ----~l~~L~~L~L~~N-~i~-~~~~---------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 86 ----ALPDLTELILTNN-SLV-ELGD---------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp ----HCTTCCEEECCSC-CCC-CGGG---------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred ----cCCCCCEEECCCC-cCC-cchh---------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccce
Confidence 2788888888887 343 4432 0033456778888888887655443 223666777
Q ss_pred EEEecc
Q 048322 351 MTISNS 356 (498)
Q Consensus 351 L~l~~~ 356 (498)
|++++|
T Consensus 145 Ld~~~n 150 (176)
T 1a9n_A 145 LDFQKV 150 (176)
T ss_dssp ETTEEC
T ss_pred eCCCcC
Confidence 666655
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.47 E-value=8.3e-07 Score=76.91 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=82.0
Q ss_pred CceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322 176 IKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 253 (498)
Q Consensus 176 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 253 (498)
-+.+++++++...+|..+. ++|++|+|++| .+..+++ ++.+++|++|+++++ .++.++...+. .+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-----~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP----TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFD-----KLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTT
T ss_pred CcEEEeCCCCCCccCCCcC----CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhC-----Ccch
Confidence 4678888888888887553 68899999986 5666644 888999999999885 68888876553 4889
Q ss_pred CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH
Q 048322 254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL 309 (498)
Q Consensus 254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L 309 (498)
|+.|+++++ .++.+.++.... +++|+.|++++++ +. ..+..+..|+..
T Consensus 83 L~~L~L~~N-~l~~l~~~~~~~-----l~~L~~L~L~~N~-~~-c~~~~~~~l~~~ 130 (174)
T 2r9u_A 83 LTQLDLNDN-HLKSIPRGAFDN-----LKSLTHIYLYNNP-WD-CECRDIMYLRNW 130 (174)
T ss_dssp CCEEECCSS-CCCCCCTTTTTT-----CTTCSEEECCSSC-BC-TTBGGGHHHHHH
T ss_pred hhEEECCCC-ccceeCHHHhcc-----ccCCCEEEeCCCC-cc-cccccHHHHHHH
Confidence 999999876 555554332333 8999999999884 33 444334445444
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.42 E-value=8.8e-07 Score=76.44 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=75.4
Q ss_pred CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322 175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252 (498)
Q Consensus 175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 252 (498)
..+.|++++++...+|..+ .++|++|+|++| .+..+++ ++.+++|++|+++++ .++.++...+. .++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~-----~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFD-----KLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT-----TCT
T ss_pred CCCEEEeCCCCcCccCccC----CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhcc-----CCC
Confidence 3567888888888888655 367889999885 5666643 888899999999885 57788776554 488
Q ss_pred CCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
+|++|+++++ .++.+.++.... +++|+.|++++++
T Consensus 79 ~L~~L~L~~N-~l~~~~~~~~~~-----l~~L~~L~L~~N~ 113 (170)
T 3g39_A 79 QLTQLSLNDN-QLKSIPRGAFDN-----LKSLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSSC
T ss_pred CCCEEECCCC-ccCEeCHHHhcC-----CCCCCEEEeCCCC
Confidence 8999999876 555555433333 8899999999874
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=0.0001 Score=72.64 Aligned_cols=204 Identities=9% Similarity=0.101 Sum_probs=105.8
Q ss_pred CccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322 200 KIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH 277 (498)
Q Consensus 200 ~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 277 (498)
+|+.+.+.+ .+..++. +..+++|+.+.+.+ +.++.++...|. ..+|+.+.+.+ +++.+....
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~------~~~L~~l~lp~--~l~~I~~~a----- 221 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV------YAGIEEVLLPV--TLKEIGSQA----- 221 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT------TCCCSEEECCT--TCCEECTTT-----
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEe------ecccCEEEeCC--chheehhhH-----
Confidence 466666653 4555553 55666666666655 346666655553 35666666642 233333211
Q ss_pred ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceec--CCCCCCCccEEEEec
Q 048322 278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCR--TPIDSKLIKFMTISN 355 (498)
Q Consensus 278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~ 355 (498)
+..+++|+.+.+.+ +++ .++.. .+.. .+|+.+.+.+. ...++ ....+++|+.+.+.+
T Consensus 222 F~~~~~L~~l~l~~--~l~-~I~~~----------------aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE--NVS-TIGQE----------------AFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TTTCTTCCCEECCT--TCC-EECTT----------------TTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEES
T ss_pred hhCCCCCCEEecCC--Ccc-Ccccc----------------cccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCC
Confidence 11256666666654 232 33321 2222 46677776432 22222 222367788887766
Q ss_pred cEeeeecCCCCccCCCCCCcCC----CCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCC
Q 048322 356 SSLDMIGCKGMLYDSQAGSSLP----KPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQ 424 (498)
Q Consensus 356 ~~l~~~~~~~l~~~~~~l~~lp----~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~ 424 (498)
+..... ....++ .+.++|+.+.+.+. .+.++++|+.+.|.. +++.+. +..+.
T Consensus 281 ~~~~~~----------~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~-----~~aF~ 343 (401)
T 4fdw_A 281 STFNDD----------PEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQIN-----FSAFN 343 (401)
T ss_dssp SCCCCC----------TTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEEC-----TTSSS
T ss_pred ccccCC----------cccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEc-----HHhCC
Confidence 532200 000111 11144555555433 456677788888843 344321 44577
Q ss_pred CCCCcCeEeeecCCCCCcCCCC---Cccccccceeecc
Q 048322 425 RLTSLQSLKIWNCPNLTLFPEV---GLPSSLLDLYVNN 459 (498)
Q Consensus 425 ~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~ 459 (498)
++ +|+.+.+.++ .+..++.. +++.+++.|++-.
T Consensus 344 ~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 344 NT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 77 8999999874 55555543 3445777777754
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.11 E-value=6.8e-06 Score=79.63 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=69.6
Q ss_pred eEEEeec-CCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322 178 KVAIRNY-GGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 254 (498)
Q Consensus 178 ~L~l~~~-~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 254 (498)
.++.++. +...+|. +. .+++|+.|+|++++.+..+|+ ++.+++|++|+|+++ .+..++...++ .+++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L 82 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH-----FTPRL 82 (347)
T ss_dssp CEECCSSCCCTTTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGG-----SCSCC
T ss_pred EEEcCCCCCCCccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhc-----CCcCC
Confidence 4566666 6777887 66 577888888886457777775 888888888888885 57777765554 48888
Q ss_pred ceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
+.|+|+++ .+..+.++.... ++ |+.|++.++
T Consensus 83 ~~L~l~~N-~l~~~~~~~~~~-----~~-L~~l~l~~N 113 (347)
T 2ifg_A 83 SRLNLSFN-ALESLSWKTVQG-----LS-LQELVLSGN 113 (347)
T ss_dssp CEEECCSS-CCSCCCSTTTCS-----CC-CCEEECCSS
T ss_pred CEEeCCCC-ccceeCHHHccc-----CC-ceEEEeeCC
Confidence 88888776 555554332221 33 888888876
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.10 E-value=7.8e-06 Score=70.70 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=64.5
Q ss_pred CCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
++|++|+++++....+ |..+. .+++|++|+|++| .+..+|+ ++.+++|++|+++++ .+..++...++ .
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-----~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD-----N 103 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc-----c
Confidence 7889999999988877 44555 5889999999986 6777876 688999999999884 67888776443 5
Q ss_pred CCCCceeeccCCC
Q 048322 251 FPSLKILRFENLP 263 (498)
Q Consensus 251 ~~~L~~L~l~~~~ 263 (498)
+++|+.|++.+++
T Consensus 104 l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 104 LKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCSEEECCSSC
T ss_pred ccCCCEEEeCCCC
Confidence 8899999998763
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.09 E-value=8.5e-06 Score=70.15 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322 174 KCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 250 (498)
.+|++|+++++....+ |..+. .+++|++|+|++| .+..+|+ ++.+++|++|+++++ .++.++...++ .
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~-----~ 100 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD-----N 100 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc-----C
Confidence 7899999999998887 44555 5899999999986 6777876 688999999999985 68888876554 5
Q ss_pred CCCCceeeccCC
Q 048322 251 FPSLKILRFENL 262 (498)
Q Consensus 251 ~~~L~~L~l~~~ 262 (498)
+++|+.|+++++
T Consensus 101 l~~L~~L~L~~N 112 (170)
T 3g39_A 101 LKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEeCCC
Confidence 889999999876
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=2.6e-05 Score=74.89 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=61.5
Q ss_pred CccccEEEecCCCcceecCC--CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC----CCCCCC-eEEecCC----
Q 048322 323 YPRLCRLEVDECKELVCRTP--IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK----PMTTTN-VLEFGKL---- 391 (498)
Q Consensus 323 l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~----~l~~L~-~L~i~~~---- 391 (498)
+++|+.+++.++....++.. ..+++|+.+++.++ ++.++. +.++|+ .+.+.+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n----------------i~~I~~~aF~~~~~L~~~l~l~~~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN----------------LKTIGQRVFSNCGRLAGTLELPASVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT----------------CCEECTTTTTTCTTCCEEEEECTTCCEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc----------------cceehHHHhhCChhccEEEEEcccceEE
Confidence 57899999998876666543 34789999999764 222322 225677 7777655
Q ss_pred ---CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEe
Q 048322 392 ---LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLK 433 (498)
Q Consensus 392 ---~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~ 433 (498)
.+.++++|+.+++.+ +.++.+. +..+.++++|+.+.
T Consensus 289 ~~~aF~~c~~L~~l~l~~-n~i~~I~-----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATG-DKITTLG-----DELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTTTCTTEEEEEECS-SCCCEEC-----TTTTCTTCCCCEEE
T ss_pred chhhhhCCccCCEEEeCC-CccCccc-----hhhhcCCcchhhhc
Confidence 567788899999866 4454331 44678888898876
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.98 E-value=1.1e-07 Score=84.41 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=25.1
Q ss_pred CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccc
Q 048322 174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKG 231 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~ 231 (498)
++|++|+++++....+|..+. .+++|++|++++| .+..+|.++.+++|++|++++
T Consensus 70 ~~L~~L~l~~n~l~~l~~~~~--~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 70 ENLRILSLGRNLIKKIENLDA--VADTLEELWISYN-QIASLSGIEKLVNLRVLYMSN 124 (198)
T ss_dssp TTCCEEEEEEEEECSCSSHHH--HHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESE
T ss_pred CCCCEEECCCCCcccccchhh--cCCcCCEEECcCC-cCCcCCccccCCCCCEEECCC
Confidence 445555555544444444333 2344555555443 333344444444455554444
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.98 E-value=4.9e-08 Score=86.73 Aligned_cols=106 Identities=16% Similarity=0.256 Sum_probs=80.9
Q ss_pred CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCC
Q 048322 170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFS 248 (498)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 248 (498)
+..+++|++|+++++....+| .+. .+++|++|++++| .+..+|. ++.+++|++|+++++ .+..++ .+.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~--~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~----- 112 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLS--GMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIE----- 112 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHH--HHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHH-----
T ss_pred HhcCCCCCEEECCCCCCcccc-ccc--cCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccc-----
Confidence 344589999999999888888 565 5899999999996 5678887 667899999999996 577665 232
Q ss_pred CCCCCCceeeccCCCccccccc-cccCCccccCCCccceeeeccCC
Q 048322 249 MPFPSLKILRFENLPEWWHWDT-DIKGNVHVDIFPRLQELSVVKCP 293 (498)
Q Consensus 249 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~ 293 (498)
.+++|+.|+++++ .+..+.. .. +..+++|++|++++|+
T Consensus 113 -~l~~L~~L~l~~N-~i~~~~~~~~-----l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 -KLVNLRVLYMSNN-KITNWGEIDK-----LAALDKLEDLLLAGNP 151 (198)
T ss_dssp -HHHHSSEEEESEE-ECCCHHHHHH-----HTTTTTCSEEEECSCH
T ss_pred -cCCCCCEEECCCC-cCCchhHHHH-----HhcCCCCCEEEecCCc
Confidence 4889999999876 4444331 11 2238999999999884
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=1.7e-06 Score=74.19 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=43.1
Q ss_pred CCCCCccEEEEcCCCCCCCccccCCCCccCC---CC----CCcCeEeeecCCCCCcCCCC--CccccccceeeccCchhH
Q 048322 394 PGFQILETLVIGNSEQLKPWRQGRGLSMGFQ---RL----TSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCPRLK 464 (498)
Q Consensus 394 ~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~---~l----~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l~ 464 (498)
.++++|++|++++|..++. .++. .+ ++|++|+|++|++++.-.-. .-.++|+.|++++||.++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD--------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIED--------GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCH--------HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred cCCCCCCEEEeCCCCccCH--------HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 4677788888888888763 2222 22 36888888888887652111 123788888998888765
Q ss_pred h
Q 048322 465 K 465 (498)
Q Consensus 465 ~ 465 (498)
.
T Consensus 154 d 154 (176)
T 3e4g_A 154 E 154 (176)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.2e-05 Score=77.95 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=95.3
Q ss_pred cCCcccEEEE-ecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC----------CCccccCCCCCCccEEeEeC
Q 048322 140 KLNLHALTLE-WGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR----------FPLWIGDPLFSKIEFLELEN 208 (498)
Q Consensus 140 ~~~L~~L~L~-~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~----------~p~~~~~~~l~~L~~L~l~~ 208 (498)
...++.|.+. |.. +..........+.+.+..+++|+.|.|.+..... ++.++. .+|+|+.|.|++
T Consensus 106 ~~~v~~L~lg~~~~--~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g 181 (362)
T 2ra8_A 106 LPSLKQITIGXWGY--EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKG 181 (362)
T ss_dssp GGGCSEEEECCCCS--SSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEEC
T ss_pred chhcceEEEccccc--CCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeC
Confidence 4457788886 542 2111112333444445556899999886643211 112222 478899999988
Q ss_pred CCCCCCCCCCCCccccceeeccccccceecC-ccccCCCCCCCCCCCceeeccCCCc-------cccccccccCCccccC
Q 048322 209 CNNCVSLPSLGLLSSLKHLAVKGLKKLKSIE-SEVYGEGFSMPFPSLKILRFENLPE-------WWHWDTDIKGNVHVDI 280 (498)
Q Consensus 209 c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~~ 280 (498)
|..+ .+|++ .+++|++|.|..|. +..-+ ..+. ...+|+|+.|++....+ +..+.+... ...
T Consensus 182 ~~~l-~l~~~-~~~~L~~L~L~~~~-l~~~~l~~l~----~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~----~~~ 250 (362)
T 2ra8_A 182 TNNL-SIGKK-PRPNLKSLEIISGG-LPDSVVEDIL----GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS----KDR 250 (362)
T ss_dssp CBTC-BCCSC-BCTTCSEEEEECSB-CCHHHHHHHH----HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC----TTT
T ss_pred CCCc-eeccc-cCCCCcEEEEecCC-CChHHHHHHH----HccCCCCcEEEEeccccccccchhHHHHHHHHh----cCC
Confidence 6333 45554 37889999887653 21110 0011 02478888888742211 111110000 012
Q ss_pred CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcce-----ecC-CCCCCCccEEEEe
Q 048322 281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELV-----CRT-PIDSKLIKFMTIS 354 (498)
Q Consensus 281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~ 354 (498)
+|+|+.|.+.+|.... .. +..+. ..+.+++|++|+++.|.... +.. ...+++|+.|+++
T Consensus 251 ~p~Lr~L~L~~~~i~~-~~-------------~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQN-VV-------------VEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CTTCCEEEEESCTTHH-HH-------------HHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCCcCEEeCCCCCCch-HH-------------HHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 7888888888763211 00 00010 12446788888887664322 111 1224666666666
Q ss_pred cc
Q 048322 355 NS 356 (498)
Q Consensus 355 ~~ 356 (498)
+|
T Consensus 316 ~n 317 (362)
T 2ra8_A 316 YN 317 (362)
T ss_dssp SB
T ss_pred CC
Confidence 55
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.92 E-value=3.9e-05 Score=74.17 Aligned_cols=105 Identities=18% Similarity=0.083 Sum_probs=78.2
Q ss_pred EEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCC
Q 048322 203 FLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFP 282 (498)
Q Consensus 203 ~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 282 (498)
.++.++.+.++.+|.++.+++|+.|+|++++.++.++...++ .+++|+.|+|+++ .++.+.++.... ++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~-----~l~~L~~L~l~~N-~l~~~~~~~~~~-----l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-----GLGELRNLTIVKS-GLRFVAPDAFHF-----TP 80 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC-----SCCCCSEEECCSS-CCCEECTTGGGS-----CS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhc-----cccCCCEEECCCC-ccceeCHHHhcC-----Cc
Confidence 456666447888999999999999999976789999876554 5999999999987 677776544333 99
Q ss_pred ccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcc
Q 048322 283 RLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKEL 337 (498)
Q Consensus 283 ~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~ 337 (498)
+|+.|+|+++ .++ .+|.. .+..++ |+.|++.+|...
T Consensus 81 ~L~~L~l~~N-~l~-~~~~~----------------~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 81 RLSRLNLSFN-ALE-SLSWK----------------TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCEEECCSS-CCS-CCCST----------------TTCSCC-CCEEECCSSCCC
T ss_pred CCCEEeCCCC-ccc-eeCHH----------------HcccCC-ceEEEeeCCCcc
Confidence 9999999987 565 56541 222233 888888877643
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.91 E-value=0.00053 Score=67.53 Aligned_cols=116 Identities=11% Similarity=0.047 Sum_probs=69.4
Q ss_pred cCCCCccccEEEecCCCcceec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC----CCCCCCeEEecCC--
Q 048322 319 SLSSYPRLCRLEVDECKELVCR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK----PMTTTNVLEFGKL-- 391 (498)
Q Consensus 319 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~----~l~~L~~L~i~~~-- 391 (498)
.+..+++|+.+.+..+- ..+. ..+.-.+|+.+.+.++ +..++. ..++|+.+.+.++
T Consensus 221 aF~~~~~L~~l~l~~~l-~~I~~~aF~~~~L~~i~lp~~----------------i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPENV-STIGQEAFRESGITTVKLPNG----------------VTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp TTTTCTTCCCEECCTTC-CEECTTTTTTCCCSEEEEETT----------------CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred HhhCCCCCCEEecCCCc-cCccccccccCCccEEEeCCC----------------ccEEChhHhhCCCCCCEEEeCCccc
Confidence 34446777788776532 1222 2222367888888543 222221 2256777776554
Q ss_pred -----------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCcc-ccccceeecc
Q 048322 392 -----------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLP-SSLLDLYVNN 459 (498)
Q Consensus 392 -----------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~-~sL~~L~i~~ 459 (498)
.+.++++|+.+.+.+ +++.+. ...+.++++|+.+.|.+ +++.++...+. .+|+.+.+.+
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~-----~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIPE--SIRILG-----QGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCCT--TCCEEC-----TTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred cCCcccEECHHHhhCCccCCeEEeCC--ceEEEh-----hhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence 345677788888763 344321 34577889999999954 57777664321 2888888877
Q ss_pred C
Q 048322 460 C 460 (498)
Q Consensus 460 c 460 (498)
.
T Consensus 355 n 355 (401)
T 4fdw_A 355 T 355 (401)
T ss_dssp S
T ss_pred C
Confidence 5
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=3.8e-06 Score=71.98 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=45.2
Q ss_pred CccEEeEeCCCCCC--CCCCCCCccccceeeccccccceecCccccCCCCCC-CCCCCceeeccCCCccccccccccCCc
Q 048322 200 KIEFLELENCNNCV--SLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM-PFPSLKILRFENLPEWWHWDTDIKGNV 276 (498)
Q Consensus 200 ~L~~L~l~~c~~~~--~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~ 276 (498)
+|++|++++|. ++ .+..+..+++|++|++++|..++.-+-..... .. ..++|++|++++|++++.-.-.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~--~~~~~~~L~~L~Ls~C~~ITD~Gl~----- 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ--LENLQKSMLEMEIISCGNVTDKGII----- 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT--CHHHHHHCCEEEEESCTTCCHHHHH-----
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh--cccccCCCCEEEcCCCCcCCHHHHH-----
Confidence 45556665554 33 22234556666666666665544332211110 00 0235677777777665543210
Q ss_pred cccCCCccceeeeccCCCcc
Q 048322 277 HVDIFPRLQELSVVKCPKLS 296 (498)
Q Consensus 277 ~~~~l~~L~~L~l~~c~~l~ 296 (498)
.+..+++|++|+|++|+.++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 11227788888888887665
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.77 E-value=6.5e-06 Score=79.94 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=95.8
Q ss_pred hcccCCcccEEEEecCCCCCCcCh-hhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC-
Q 048322 137 LCEKLNLHALTLEWGSQFDNSRDV-AVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS- 214 (498)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~- 214 (498)
+..+++|+.|.+....... .... .....+...+.++++|+.|.++|+.+..+|. + .+++|++|.|..|. +..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~-~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~-l~~~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEE-QEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGG-LPDS 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTT-CCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSB-CCHH
T ss_pred hhhcchhhheeecCcchhh-cccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCC-CChH
Confidence 4567899999885432100 0000 0000122333456899999999986556655 2 37899999998763 221
Q ss_pred -CCCC--CCccccceeecccccc-------ceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCcc
Q 048322 215 -LPSL--GLLSSLKHLAVKGLKK-------LKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRL 284 (498)
Q Consensus 215 -lp~i--~~l~~L~~L~l~~~~~-------l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L 284 (498)
+..+ ..+|+|++|+|..+.+ +..+...+. ...||+|++|.+.+|..-......... ...+++|
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~----~~~~p~Lr~L~L~~~~i~~~~~~~la~---a~~~~~L 281 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS----KDRFPNLKWLGIVDAEEQNVVVEMFLE---SDILPQL 281 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC----TTTCTTCCEEEEESCTTHHHHHHHHHH---CSSGGGC
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh----cCCCCCcCEEeCCCCCCchHHHHHHHh---CccCCCC
Confidence 1112 3689999999853211 111111111 135899999999877432111100000 0128999
Q ss_pred ceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCc
Q 048322 285 QELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKE 336 (498)
Q Consensus 285 ~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~ 336 (498)
++|+|+.| .+.+. ..+. +...++.+++|+.|++++|..
T Consensus 282 ~~LdLs~n-~L~d~------G~~~-------L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 282 ETMDISAG-VLTDE------GARL-------LLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SEEECCSS-CCBHH------HHHH-------HHTTHHHHTTCSEEECCSBBC
T ss_pred CEEECCCC-CCChH------HHHH-------HHhhcccCCcceEEECCCCcC
Confidence 99999765 44311 0011 111223467899999988853
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.0045 Score=60.70 Aligned_cols=69 Identities=10% Similarity=0.026 Sum_probs=37.7
Q ss_pred CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--ccc
Q 048322 381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSS 451 (498)
Q Consensus 381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s 451 (498)
.+|+.+.+.++ .+.++.+|+++.|.+ +++.+. ...+.++++|+.+.+.. .++.++...+ .++
T Consensus 297 ~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~-----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 297 SSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIG-----KRSFRGCTSLSNINFPL--SLRKIGANAFQGCIN 367 (394)
T ss_dssp TTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEEC-----TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred ccccccccccccceechhhhcCCCCCCEEEeCC--cccEEh-----HHhccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence 45666655444 344455566666632 232221 33466677777777754 3666655433 256
Q ss_pred ccceeec
Q 048322 452 LLDLYVN 458 (498)
Q Consensus 452 L~~L~i~ 458 (498)
|+.+++.
T Consensus 368 L~~i~lp 374 (394)
T 4fs7_A 368 LKKVELP 374 (394)
T ss_dssp CCEEEEE
T ss_pred CCEEEEC
Confidence 7777664
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.72 E-value=3.5e-05 Score=75.28 Aligned_cols=142 Identities=15% Similarity=0.009 Sum_probs=66.9
Q ss_pred cCCcccEEEEecCCCCCCcChhhHHHhhhcCCC-CCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322 140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQP-HKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS 217 (498)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~ 217 (498)
..+|+.|+|+.+.- .......+...+.. +.+|++|++++|..... ...+.. .+++|++|+|++| .++....
T Consensus 71 ~~~L~~L~Ls~n~l-----~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n-~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-----TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLN-SLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCC-----CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSS-CCCHHHH
T ss_pred HhhCCEEEecCCCC-----CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCC-CCCHHHH
Confidence 45677888866541 11122233333332 36788888887764321 111111 3457888888876 3332110
Q ss_pred --C-----CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeec
Q 048322 218 --L-----GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVV 290 (498)
Q Consensus 218 --i-----~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (498)
+ ...++|++|++++|. ++..+..... ..+...++|++|+++++. +........ ...+...++|++|+++
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~-l~~~g~~~L-~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM-EGLAGNTSVTHLSLLHTG-LGDEGLELL-AAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH-HHHHTCSSCCEEECTTSS-CHHHHHHHH-HHHGGGCSCCCEEECC
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH-HHHhcCCCcCEEeCCCCC-CCcHHHHHH-HHHHhcCCCcCeEECC
Confidence 1 234567777777753 3332211110 001135667777776652 222110000 0011124567777777
Q ss_pred cC
Q 048322 291 KC 292 (498)
Q Consensus 291 ~c 292 (498)
+|
T Consensus 220 ~N 221 (372)
T 3un9_A 220 YN 221 (372)
T ss_dssp SS
T ss_pred CC
Confidence 66
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.64 E-value=0.19 Score=49.01 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=40.9
Q ss_pred CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--ccc
Q 048322 381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSS 451 (498)
Q Consensus 381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s 451 (498)
++|+.+.+... .+.++.+|+++.|.. +++.+. ...+.++++|+++.|.. .++.++...+ .++
T Consensus 288 ~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~-----~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 288 PALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQIL-----DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTA 358 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEEC-----TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTT
T ss_pred cccccccCCCcccccCceeecCCCCcCEEEeCC--cccEeh-----HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCC
Confidence 44555554433 334455566666632 232221 33566778888888853 4666765433 367
Q ss_pred ccceeeccCc
Q 048322 452 LLDLYVNNCP 461 (498)
Q Consensus 452 L~~L~i~~c~ 461 (498)
|+.+++.+..
T Consensus 359 L~~i~~~~~~ 368 (394)
T 4gt6_A 359 LNNIEYSGSR 368 (394)
T ss_dssp CCEEEESSCH
T ss_pred CCEEEECCce
Confidence 8888887653
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.61 E-value=3.7e-05 Score=75.07 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=57.3
Q ss_pred CCCceEEEeecCCCCCC-----ccccCCCCCCccEEeEeCCCCCCC--CCCC-CCccccceeeccccccceecCccccCC
Q 048322 174 KCIKKVAIRNYGGARFP-----LWIGDPLFSKIEFLELENCNNCVS--LPSL-GLLSSLKHLAVKGLKKLKSIESEVYGE 245 (498)
Q Consensus 174 ~~L~~L~l~~~~~~~~p-----~~~~~~~l~~L~~L~l~~c~~~~~--lp~i-~~l~~L~~L~l~~~~~l~~i~~~~~~~ 245 (498)
++|+.|+++++...... ..+. ...++|++|+|++|. ++. +..+ ..+++|++|++++| .++..+......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHS-SCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHh-hCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 67899999988754321 1111 123689999999874 322 1122 23567888888876 343322211110
Q ss_pred CCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322 246 GFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC 292 (498)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 292 (498)
.-....++|++|++++| .+........ ...+...++|++|++++|
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVL-MEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHH-HHHHHTCSSCCEEECTTS
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHH-HHHHhcCCCcCEEeCCCC
Confidence 00012456777777666 2322110000 000112566777777666
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.90 E-value=0.23 Score=47.91 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=35.8
Q ss_pred CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--ccc
Q 048322 381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSS 451 (498)
Q Consensus 381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s 451 (498)
.+|+.+.+... .+.++++|+.+.+.+ ..++.+. ...+.++++|+.+.+.+ .++.++...+ ..+
T Consensus 263 ~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~-----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 263 TALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN-SAIETLE-----PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTCCEEEECCCCSEECTTTTTTCTTCCEEEECC-TTCCEEC-----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred ehhccccccccceeccccccccccccccccccc-cccceeh-----hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence 34555555443 344556677777644 2232221 33466677777777743 4555554322 245
Q ss_pred ccceee
Q 048322 452 LLDLYV 457 (498)
Q Consensus 452 L~~L~i 457 (498)
|+.+.+
T Consensus 335 L~~i~i 340 (379)
T 4h09_A 335 LSTISY 340 (379)
T ss_dssp CCCCCC
T ss_pred CCEEEE
Confidence 555555
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.83 E-value=0.23 Score=48.31 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=35.3
Q ss_pred CCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeecc
Q 048322 197 LFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFE 260 (498)
Q Consensus 197 ~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~ 260 (498)
.+.+|+.+.+.+ .+..++. +..+.+|+.+.+.. +++.++...+. .+..|+.+.+.
T Consensus 160 ~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~-----~~~~L~~i~~~ 216 (394)
T 4fs7_A 160 TCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFA-----ECILLENMEFP 216 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTT-----TCTTCCBCCCC
T ss_pred ccCCCcEEecCC--ccceeccccccCCCCceEEEcCC--CceEeCchhhc-----cccccceeecC
Confidence 467788888865 3455554 66778888888864 46677665443 35566655543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.78 E-value=0.0011 Score=57.55 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCCchHHhHHHhhcccCCcccEEEEec-CCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCC
Q 048322 125 VPTERENAREAALCEKLNLHALTLEWG-SQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLF 198 (498)
Q Consensus 125 ~v~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l 198 (498)
+..+..++....+...+.|+.|+|+++ .- .......+.+.+...++|++|+++++.... +...+. ..
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i-----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n 92 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNI-----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VN 92 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTC-----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HC
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCC-----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hC
Confidence 344556666667778899999999776 31 122334456667777889999998887432 112222 24
Q ss_pred CCccEEeEeCC
Q 048322 199 SKIEFLELENC 209 (498)
Q Consensus 199 ~~L~~L~l~~c 209 (498)
++|++|+|++|
T Consensus 93 ~~L~~L~L~~N 103 (185)
T 1io0_A 93 NTLKSLNVESN 103 (185)
T ss_dssp SSCCEEECCSS
T ss_pred CCcCEEECcCC
Confidence 56788888775
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.12 E-value=0.0051 Score=56.50 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=11.4
Q ss_pred HHHhhhhhhHHHHHHH
Q 048322 28 DLAYDAEDILDGFGTQ 43 (498)
Q Consensus 28 d~~yd~eDvlD~~~~~ 43 (498)
..-||.+++++-+..+
T Consensus 32 g~ky~k~~ll~~i~~~ 47 (267)
T 3rw6_A 32 GRKYDKAWLLSMIQSK 47 (267)
T ss_dssp GGGSCHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHh
Confidence 4568888888887543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.15 E-value=0.024 Score=52.02 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=7.1
Q ss_pred CCCCeEEecCC
Q 048322 381 TTTNVLEFGKL 391 (498)
Q Consensus 381 ~~L~~L~i~~~ 391 (498)
++|+.|++++|
T Consensus 170 ~~L~~L~Ls~N 180 (267)
T 3rw6_A 170 PELLSLNLSNN 180 (267)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 56666666666
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.49 E-value=0.25 Score=39.68 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=28.8
Q ss_pred eEEEeecCCC--CCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeecccc
Q 048322 178 KVAIRNYGGA--RFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGL 232 (498)
Q Consensus 178 ~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~ 232 (498)
.++.++.+.. .+|..+. ++|++|+|++| .++.+|. +..+++|+.|+|.++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP----VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC----TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC----cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 4555555555 5665332 35677777763 5666664 455666666666654
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.99 E-value=0.06 Score=46.36 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=45.1
Q ss_pred HHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCCCCccEEeE--
Q 048322 134 EAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLFSKIEFLEL-- 206 (498)
Q Consensus 134 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l-- 206 (498)
...+...++|++|+|+++.- .......+.+.+...++|++|+++++.... +...+. ..+.|++|+|
T Consensus 58 ~~~L~~~~~L~~L~Ls~n~i-----~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~--~n~~L~~L~L~~ 130 (185)
T 1io0_A 58 AEALKTNTYVKKFSIVGTRS-----NDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ--SNTSLIELRIDN 130 (185)
T ss_dssp HHHHTTCCSCCEEECTTSCC-----CHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG--GCSSCCEEECCC
T ss_pred HHHHHhCCCcCEEECcCCCC-----ChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH--hCCCceEEEecC
Confidence 34456678999999988752 122233455666667899999999987543 223333 3567888888
Q ss_pred eCC
Q 048322 207 ENC 209 (498)
Q Consensus 207 ~~c 209 (498)
++|
T Consensus 131 ~~N 133 (185)
T 1io0_A 131 QSQ 133 (185)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.53 E-value=1.4 Score=42.63 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCCccccceeeccccccceecCccccCCCCCCCCCCCceeec
Q 048322 218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRF 259 (498)
Q Consensus 218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l 259 (498)
+..+++|+.+.+.. .++.++...|. .+.+|+.+.+
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~-----~c~~L~~i~l 318 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFA-----GCISLKSIDI 318 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCEEEC
T ss_pred cccccccccccCCC--cccccCceeec-----CCCCcCEEEe
Confidence 34444555554432 34444443332 2444444444
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.90 E-value=4.3 Score=38.77 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccC
Q 048322 198 FSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFEN 261 (498)
Q Consensus 198 l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~ 261 (498)
+.+|+.+.+.. .++.++. +..+.+|+.+.+.. +++.++...|. .+.+|+.+.+.+
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~-----~c~~L~~i~l~~ 295 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS-----GCSNLTKVVMDN 295 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT-----TCTTCCEEEECC
T ss_pred CccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccc-----cccccccccccc
Confidence 55677776654 2444443 55566677666643 45566554443 366666666643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.46 E-value=1.8 Score=34.54 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=31.1
Q ss_pred CCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCC
Q 048322 173 HKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCN 210 (498)
Q Consensus 173 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~ 210 (498)
+.+|++|+|++|....+|..... .+++|+.|+|.+|.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLD-ALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGG-GCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCccChhhhh-hccccCEEEecCCC
Confidence 36899999999999999876543 58899999999863
No 164
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=57.50 E-value=30 Score=28.92 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=45.5
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCcccccccccccCCCcccccchhhhhhHHHHHHHHH
Q 048322 12 KRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLE 91 (498)
Q Consensus 12 ~~~~~~~~~~Wl~~lrd~~yd~eDvlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~l~ 91 (498)
....|+.+..+...|.++.|.++|+..+........ . +.| .++..|..|+.
T Consensus 82 l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~l-----e--------------~DP----------~rL~~ie~RL~ 132 (175)
T 4abx_A 82 GAKYDETVMQLQNELRAALESVQAIAGELRDVAEGS-----A--------------ADP----------EALDRVEARLS 132 (175)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----C--------------CCH----------HHHHHHHHHHH
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----C--------------CCH----------HHHHHHHHHHH
Confidence 345678889999999999999999999886654211 0 111 45788888888
Q ss_pred HHHHHHhhhc
Q 048322 92 QLCQDRIELG 101 (498)
Q Consensus 92 ~i~~~~~~~~ 101 (498)
.+..-..+|+
T Consensus 133 ~l~~L~RKyg 142 (175)
T 4abx_A 133 ALSKLKNKYG 142 (175)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 8888888887
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=56.09 E-value=6.3 Score=33.86 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCCchHHhHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCCC
Q 048322 125 VPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLFS 199 (498)
Q Consensus 125 ~v~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~ 199 (498)
+.++.+++...-+..-..|+.|+|+++... .......+.+.|.....|+.|+++++.... +...+. .=+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~i----gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--~N~ 98 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRV----SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSP 98 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSS----CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCS
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCC----CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--cCC
Confidence 556677777666777889999999664211 223345577888888999999999887431 111111 124
Q ss_pred CccEEeEeCC
Q 048322 200 KIEFLELENC 209 (498)
Q Consensus 200 ~L~~L~l~~c 209 (498)
.|++|+|++|
T Consensus 99 tL~~L~L~~N 108 (197)
T 1pgv_A 99 SLRVLNVESN 108 (197)
T ss_dssp SCCEEECCSS
T ss_pred ccCeEecCCC
Confidence 5778887775
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=55.27 E-value=6.6 Score=33.76 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=23.7
Q ss_pred CccccEEEecCCCccee-------cCCCCCCCccEEEEeccEeeeec
Q 048322 323 YPRLCRLEVDECKELVC-------RTPIDSKLIKFMTISNSSLDMIG 362 (498)
Q Consensus 323 l~~L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~l~~~~ 362 (498)
-+.|++|+++++..+.. ..+..-+.|+.|++++|.+.-.+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g 86 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE 86 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH
Confidence 46788888887533321 11233567888888777554433
No 167
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=40.25 E-value=18 Score=18.15 Aligned_cols=13 Identities=23% Similarity=0.864 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 048322 17 EAVKMWLDELQDL 29 (498)
Q Consensus 17 ~~~~~Wl~~lrd~ 29 (498)
..|+.|+..+|-+
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 5789999999853
No 168
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=34.28 E-value=34 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.0
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHhhhhhhHHHH
Q 048322 6 LSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGF 40 (498)
Q Consensus 6 L~da~~~~~~~~~~~~Wl~~lrd~~yd~eDvlD~~ 40 (498)
+.+|+.+...+.+..+|+..++...-||||.=--.
T Consensus 10 ~~r~amrNrg~n~adaaL~~L~qqGvdmerLr~Al 44 (101)
T 2lf6_A 10 LASAARHNHSANQTNEALRRLTQEGVDMERLRTSL 44 (101)
T ss_dssp HHHHHCCCCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46677778888889999999999999999974433
No 169
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.24 E-value=1.6e+02 Score=26.41 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCcccccccccccCCCcccccchhhhhhHHHHHHHHHHHHH
Q 048322 16 DEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQ 95 (498)
Q Consensus 16 ~~~~~~Wl~~lrd~~yd~eDvlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~l~~i~~ 95 (498)
+..+-.-++||=+++.-|+||+.+...++ ..++.|+..+..|+..+..
T Consensus 31 n~tL~gilRQL~dLs~~A~dIF~eL~~e~--------------------------------~~~~~R~~~L~~RI~~L~~ 78 (279)
T 3p8c_D 31 NISLANIIRQLSSLSKYAEDIFGELFNEA--------------------------------HSFSFRVNSLQERVDRLSV 78 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999997775 2345667777777777765
Q ss_pred HHh
Q 048322 96 DRI 98 (498)
Q Consensus 96 ~~~ 98 (498)
.-.
T Consensus 79 ~v~ 81 (279)
T 3p8c_D 79 SVT 81 (279)
T ss_dssp HHH
T ss_pred hcc
Confidence 543
No 170
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=23.70 E-value=49 Score=24.18 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=27.9
Q ss_pred HHHHhcccccHHHHHHHHHHHHHHhhhhhhHHHH
Q 048322 7 SDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGF 40 (498)
Q Consensus 7 ~da~~~~~~~~~~~~Wl~~lrd~~yd~eDvlD~~ 40 (498)
.+|+.+...+.+..+||..++...-||||+=--.
T Consensus 22 ~r~amrNrgnn~adaaL~~L~qqGvdmerLraAl 55 (107)
T 2lf3_A 22 NRVAMRNRGNNEADAALQALAQNGINMEDLRAAL 55 (107)
T ss_dssp THHHHCCSTHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hHHHHHhccchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567777888889999999999999999974433
Done!