Query 048323
Match_columns 99
No_of_seqs 103 out of 164
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 1.3E-41 2.9E-46 292.2 9.3 99 1-99 617-719 (719)
2 PF07059 DUF1336: Protein of u 100.0 2.9E-40 6.3E-45 252.4 6.7 85 1-85 138-227 (227)
3 PF09926 DUF2158: Uncharacteri 53.1 16 0.00034 22.4 2.5 30 2-31 12-41 (53)
4 COG1521 Pantothenate kinase ty 51.8 6.2 0.00013 31.1 0.6 50 11-60 79-130 (251)
5 PF03622 IBV_3B: IBV 3B protei 38.6 33 0.00072 22.1 2.3 17 21-37 36-52 (64)
6 PF14243 DUF4343: Domain of un 36.9 77 0.0017 22.2 4.2 45 19-64 57-104 (130)
7 PF06348 DUF1059: Protein of u 32.7 7.3 0.00016 23.9 -1.4 26 55-80 9-34 (57)
8 PF02088 Ornatin: Ornatin; In 27.0 44 0.00095 19.7 1.3 17 12-31 20-36 (41)
9 KOG1568 Mitochondrial inner me 25.6 55 0.0012 24.9 2.0 52 2-57 95-149 (174)
10 PF04414 tRNA_deacylase: D-ami 24.5 1.2E+02 0.0026 23.3 3.8 22 32-53 94-126 (213)
11 PRK08446 coproporphyrinogen II 23.6 31 0.00068 27.5 0.4 56 40-96 135-191 (350)
12 COG2442 Uncharacterized conser 23.5 46 0.001 21.9 1.1 22 4-25 11-34 (79)
13 PHA02095 hypothetical protein 21.0 2.7E+02 0.0059 18.7 4.6 46 12-74 9-57 (84)
14 PF06848 Disaggr_repeat: Disag 20.6 71 0.0015 24.5 1.8 34 30-70 128-161 (182)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=1.3e-41 Score=292.15 Aligned_cols=99 Identities=83% Similarity=1.201 Sum_probs=96.2
Q ss_pred CccceEEEeccCCCceEecceeeeeEeeCCCeEE----EechHHHHHHHHhhhccceeEEEeeeEeeecCCCCCcccccc
Q 048323 1 MQGSWIVRQSDGSTPCLLGKAVDCNYIRGPKLML----ACSSTVANGVLGLVIGVITAVVVDMAFLVQANTTGELPERLI 76 (99)
Q Consensus 1 ~~GpwiVr~aVg~~P~llGk~l~~~y~~g~nYlE----I~sS~iA~~i~~l~~g~~~~lvvD~gf~Ieg~~e~ELPE~lL 76 (99)
+||||||||+||+|||||||+++|+||+|+|||| |+||++|+++++||+||+++|+|||||+||||++|||||+||
T Consensus 617 v~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~lvvD~af~ie~~~~eELPE~ll 696 (719)
T PLN00188 617 PKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTYEELPERLI 696 (719)
T ss_pred cCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhheEEEEEEEEecCChhhCchhhe
Confidence 6999999999999999999999999999999999 679999999999999999999999999999999999999999
Q ss_pred ceEEecccccCcccCCCCCCCCC
Q 048323 77 GAVRVSYIELKSAIVPKLEPETS 99 (99)
Q Consensus 77 G~vRl~~ld~~~A~~~~~~~~~~ 99 (99)
||+|++++|+++|+.++++|.++
T Consensus 697 G~~Rl~~i~~~~A~~~~~~~~~~ 719 (719)
T PLN00188 697 GAVRVSHVELSSAIVPKLDPDTS 719 (719)
T ss_pred eeEEecccchhhccccCCCCCCC
Confidence 99999999999999999998764
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=2.9e-40 Score=252.40 Aligned_cols=85 Identities=44% Similarity=0.790 Sum_probs=82.6
Q ss_pred CccceEEEecc-CCCceEecceeeeeEeeCCCeEE----EechHHHHHHHHhhhccceeEEEeeeEeeecCCCCCccccc
Q 048323 1 MQGSWIVRQSD-GSTPCLLGKAVDCNYIRGPKLML----ACSSTVANGVLGLVIGVITAVVVDMAFLVQANTTGELPERL 75 (99)
Q Consensus 1 ~~GpwiVr~aV-g~~P~llGk~l~~~y~~g~nYlE----I~sS~iA~~i~~l~~g~~~~lvvD~gf~Ieg~~e~ELPE~l 75 (99)
++||||||++| |+|||||||+++|+||+|+|||| |+||++|++++++|+||+++|+|||||+|||+++|||||||
T Consensus 138 v~gpwivr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~l 217 (227)
T PF07059_consen 138 VNGPWIVRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERL 217 (227)
T ss_pred cCCchhhhhhhcCCCceeecCccceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchhe
Confidence 57999999999 89999999999999999999999 45899999999999999999999999999999999999999
Q ss_pred cceEEecccc
Q 048323 76 IGAVRVSYIE 85 (99)
Q Consensus 76 LG~vRl~~ld 85 (99)
|||+||+|||
T Consensus 218 Lg~~Rl~~id 227 (227)
T PF07059_consen 218 LGCVRLNHID 227 (227)
T ss_pred EeEEEeeecC
Confidence 9999999998
No 3
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=53.09 E-value=16 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.9
Q ss_pred ccceEEEeccCCCceEecceeeeeEeeCCC
Q 048323 2 QGSWIVRQSDGSTPCLLGKAVDCNYIRGPK 31 (99)
Q Consensus 2 ~GpwiVr~aVg~~P~llGk~l~~~y~~g~n 31 (99)
-||.|.-..+|..+...+..+.|.||.+.+
T Consensus 12 GGp~MTV~~v~~~~~~~~~~v~C~WFd~~~ 41 (53)
T PF09926_consen 12 GGPRMTVTEVGPNAGASGGWVECQWFDGHG 41 (53)
T ss_pred CCCCeEEEEccccccCCCCeEEEEeCCCCC
Confidence 489999999998888888999999998764
No 4
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=51.78 E-value=6.2 Score=31.14 Aligned_cols=50 Identities=16% Similarity=-0.017 Sum_probs=33.6
Q ss_pred cCCCc-eEecceeeeeEe-eCCCeEEEechHHHHHHHHhhhccceeEEEeee
Q 048323 11 DGSTP-CLLGKAVDCNYI-RGPKLMLACSSTVANGVLGLVIGVITAVVVDMA 60 (99)
Q Consensus 11 Vg~~P-~llGk~l~~~y~-~g~nYlEI~sS~iA~~i~~l~~g~~~~lvvD~g 60 (99)
...+| +..+++....+. +-+||-|+|++.+++.+-..-..--.-+|||+|
T Consensus 79 f~~~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~~~vVVD~G 130 (251)
T COG1521 79 FKVKPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGKAVVVVDFG 130 (251)
T ss_pred hccCceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 34456 666666555543 458999999999888765554444447999987
No 5
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=38.59 E-value=33 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.2
Q ss_pred eeeeeEeeCCCeEEEec
Q 048323 21 AVDCNYIRGPKLMLACS 37 (99)
Q Consensus 21 ~l~~~y~~g~nYlEI~s 37 (99)
...+-||||-+|-||+|
T Consensus 36 PFE~cyyrgGsfwEieS 52 (64)
T PF03622_consen 36 PFEVCYYRGGSFWEIES 52 (64)
T ss_pred CeeEEEEecCcEEEeec
Confidence 34677999999999986
No 6
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=36.93 E-value=77 Score=22.16 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=28.8
Q ss_pred cceeeeeEeeCCCeEEEechHHHHHHHHhh---hccceeEEEeeeEeee
Q 048323 19 GKAVDCNYIRGPKLMLACSSTVANGVLGLV---IGVITAVVVDMAFLVQ 64 (99)
Q Consensus 19 Gk~l~~~y~~g~nYlEI~sS~iA~~i~~l~---~g~~~~lvvD~gf~Ie 64 (99)
|+-++...|++...++++.+.++. ....+ ...-...++|+|.+=.
T Consensus 57 g~vv~~s~Y~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~vlDvg~~~~ 104 (130)
T PF14243_consen 57 GEVVTGSPYRGDWDLEPDPDVVAF-AIQALAAAWTLPPAYVLDVGVTDD 104 (130)
T ss_pred CEEEEEeecCCCcccCCCHHHHHH-HHHHHHhcccCCCeEEEEEEEeCC
Confidence 455566677777777775443332 23333 4888899999998743
No 7
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=32.68 E-value=7.3 Score=23.91 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEeeeEeeecCCCCCccccccceEE
Q 048323 55 VVVDMAFLVQANTTGELPERLIGAVR 80 (99)
Q Consensus 55 lvvD~gf~Ieg~~e~ELPE~lLG~vR 80 (99)
+..|=+|.+.|.+++||-+++---.|
T Consensus 9 ~g~~C~~~~~a~tedEll~~~~~Ha~ 34 (57)
T PF06348_consen 9 VGPDCGFVIRAETEDELLEAVVEHAR 34 (57)
T ss_pred cCCCCCeEEeeCCHHHHHHHHHHHHH
Confidence 45678899999999999888654433
No 8
>PF02088 Ornatin: Ornatin; InterPro: IPR002463 Ornatin is a potent glycoprotein IIb-IIIa (GP IIb-IIIa) antagonist and platelet aggregation inhibitor []. The protein is 41-52 residues in length and contains the RGD recognition motif common in adhesion proteins, and 6 conserved cysteine residues. The sequences of ornatin isoforms B, C, D and E are highly similar, while isoforms A2 and A3 are less similar, lacking the N-terminal 9 residues. Ornatins share ~40% identity with decorsin, a GP IIb-IIIa antagonist isolated from the leech (Macrobdella decora) [].; GO: 0007155 cell adhesion, 0030193 regulation of blood coagulation, 0005576 extracellular region
Probab=26.95 E-value=44 Score=19.68 Aligned_cols=17 Identities=47% Similarity=1.081 Sum_probs=13.9
Q ss_pred CCCceEecceeeeeEeeCCC
Q 048323 12 GSTPCLLGKAVDCNYIRGPK 31 (99)
Q Consensus 12 g~~P~llGk~l~~~y~~g~n 31 (99)
.++||-+|| |++-||+|
T Consensus 20 ~gkpctvgk---c~~argd~ 36 (41)
T PF02088_consen 20 NGKPCTVGK---CNIARGDD 36 (41)
T ss_pred CCeeeceee---eeecccCC
Confidence 358999998 89988875
No 9
>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.60 E-value=55 Score=24.89 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred ccceEEEeccCC--CceEecceeeeeEeeCCCeEE-EechHHHHHHHHhhhccceeEEE
Q 048323 2 QGSWIVRQSDGS--TPCLLGKAVDCNYIRGPKLML-ACSSTVANGVLGLVIGVITAVVV 57 (99)
Q Consensus 2 ~GpwiVr~aVg~--~P~llGk~l~~~y~~g~nYlE-I~sS~iA~~i~~l~~g~~~~lvv 57 (99)
||-||+- -+. .|+-+=| -|-|..|+|+.| +||++..==-++++.|++..++-
T Consensus 95 egd~~~t--~~~k~~~v~vpk--ghcWVegDn~~hs~DSntFGPVS~gli~grai~ilw 149 (174)
T KOG1568|consen 95 EGDIMVT--EDEKEEPVVVPK--GHCWVEGDNQKHSYDSNTFGPVSTGLIVGRAIYILW 149 (174)
T ss_pred cccEecc--CCCCCCceecCC--CcEEEecCCcccccccCccCCcchhheeeeEEEEEc
Confidence 4555554 222 2455533 366889999999 99987544445667787776653
No 10
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=24.50 E-value=1.2e+02 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.0
Q ss_pred eEEEech-----------HHHHHHHHhhhccce
Q 048323 32 LMLACSS-----------TVANGVLGLVIGVIT 53 (99)
Q Consensus 32 YlEI~sS-----------~iA~~i~~l~~g~~~ 53 (99)
|+||||+ .+|+.++.+.....+
T Consensus 94 FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~ 126 (213)
T PF04414_consen 94 FVEIGSTEEEWNDPDAAEAVARAVLEVLESDEK 126 (213)
T ss_dssp EEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCHHHhCChHHHHHHHHHHHHHhccccc
Confidence 7789985 488999888776663
No 11
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.63 E-value=31 Score=27.49 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHHHhhhcc-ceeEEEeeeEeeecCCCCCccccccceEEecccccCcccCCCCCC
Q 048323 40 VANGVLGLVIGV-ITAVVVDMAFLVQANTTGELPERLIGAVRVSYIELKSAIVPKLEP 96 (99)
Q Consensus 40 iA~~i~~l~~g~-~~~lvvD~gf~Ieg~~e~ELPE~lLG~vRl~~ld~~~A~~~~~~~ 96 (99)
-+...+..++.+ ++++.+|+-|-+-||+.+++.+.+--+.++. +|.-+.-.+.+.|
T Consensus 135 ~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~-~~~is~y~L~~~~ 191 (350)
T PRK08446 135 QIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELP-INHLSAYSLTIEE 191 (350)
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcC-CCEEEeccceecC
Confidence 344455555554 6789999999999999999988765544433 3333333344433
No 12
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=46 Score=21.85 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=15.3
Q ss_pred ceEEE--eccCCCceEecceeeee
Q 048323 4 SWIVR--QSDGSTPCLLGKAVDCN 25 (99)
Q Consensus 4 pwiVr--~aVg~~P~llGk~l~~~ 25 (99)
+||++ .--|+||||-|.+++..
T Consensus 11 ~~I~~~P~i~gGkP~I~GtRI~V~ 34 (79)
T COG2442 11 NRIVITPGICGGKPCIRGTRIPVW 34 (79)
T ss_pred CeeEeCCcccCCcceEeCceecHH
Confidence 34544 34678999999987653
No 13
>PHA02095 hypothetical protein
Probab=21.02 E-value=2.7e+02 Score=18.66 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=30.1
Q ss_pred CCCceEecceeeeeEeeC---CCeEEEechHHHHHHHHhhhccceeEEEeeeEeeecCCCCCcccc
Q 048323 12 GSTPCLLGKAVDCNYIRG---PKLMLACSSTVANGVLGLVIGVITAVVVDMAFLVQANTTGELPER 74 (99)
Q Consensus 12 g~~P~llGk~l~~~y~~g---~nYlEI~sS~iA~~i~~l~~g~~~~lvvD~gf~Ieg~~e~ELPE~ 74 (99)
|++|+|+.. .+++.| ..|.|=|+ -.---||=-+.|||..+.-+||-
T Consensus 9 ~~~p~ll~~---~s~~~g~iq~~yv~ng~--------------wefsrvdgilciegd~~~pm~~f 57 (84)
T PHA02095 9 GTNPVLLNF---FSMTEGVIQNGYVENGS--------------WEFSRVDGILCIEGDKEHPMPDF 57 (84)
T ss_pred CCCceEEEE---EEeecceeeeeEEecCc--------------EEEEeccEEEEecCCCCCCchhh
Confidence 457999865 455555 36777321 11123566788999999999874
No 14
>PF06848 Disaggr_repeat: Disaggregatase related repeat; InterPro: IPR010671 This entry describes several repeats which seem to be specific to the Methanosarcina archaea species and are often found in multiple copies in disaggregatase proteins. Members of this family are also found in single copies in several hypothetical proteins.
Probab=20.58 E-value=71 Score=24.47 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.7
Q ss_pred CCeEEEechHHHHHHHHhhhccceeEEEeeeEeeecCCCCC
Q 048323 30 PKLMLACSSTVANGVLGLVIGVITAVVVDMAFLVQANTTGE 70 (99)
Q Consensus 30 ~nYlEI~sS~iA~~i~~l~~g~~~~lvvD~gf~Ieg~~e~E 70 (99)
-+|.|++ +..||.+|++-=--..||+|.+++|..
T Consensus 128 n~y~eld-------vTeLV~eyvsg~yeNtGfLIK~r~E~~ 161 (182)
T PF06848_consen 128 NRYYELD-------VTELVKEYVSGKYENTGFLIKARTENN 161 (182)
T ss_pred CceEEcc-------HHHHHHHHhcCCccCceEEEEEecCCC
Confidence 4789987 677888888877777999999988864
Done!