Query 048323
Match_columns 99
No_of_seqs 103 out of 164
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 68.2 1.4 5E-05 24.8 0.6 20 52-71 13-32 (37)
2 1yqe_A Hypothetical UPF0204 pr 34.6 36 0.0012 26.1 3.6 22 32-53 154-186 (282)
3 3tig_A TTL protein; ATP-grAsp, 26.4 44 0.0015 26.5 2.9 24 3-27 181-207 (380)
4 2zou_A Spondin-1; beta-sandwic 24.1 37 0.0013 23.1 1.9 24 59-82 54-80 (149)
5 2gfq_A UPF0204 protein PH0006; 21.5 58 0.002 25.2 2.7 21 32-52 174-205 (298)
6 3coo_A Spondin-1; reelin-N dom 19.6 35 0.0012 24.4 1.0 24 59-82 69-95 (180)
7 3npd_A Putative secreted prote 15.9 79 0.0027 21.6 2.0 16 52-67 28-43 (118)
8 2dnr_A Synaptojanin-1; RRM dom 13.9 1.4E+02 0.0048 19.1 2.8 33 18-51 39-71 (91)
9 1xzp_A Probable tRNA modificat 13.2 1.1E+02 0.0038 24.4 2.6 25 27-51 103-130 (482)
10 4akm_A Lysosome-associated mem 12.8 84 0.0029 21.3 1.5 18 2-21 4-21 (166)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=68.19 E-value=1.4 Score=24.80 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=15.6
Q ss_pred ceeEEEeeeEeeecCCCCCc
Q 048323 52 ITAVVVDMAFLVQANTTGEL 71 (99)
Q Consensus 52 ~~~lvvD~gf~Ieg~~e~EL 71 (99)
+=++..|+||.++..++|.+
T Consensus 13 LFSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 13 LFSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred eEEEEeccccccCCcchhhh
Confidence 34789999999998766554
No 2
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=34.58 E-value=36 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=16.9
Q ss_pred eEEEech-----------HHHHHHHHhhhccce
Q 048323 32 LMLACSS-----------TVANGVLGLVIGVIT 53 (99)
Q Consensus 32 YlEI~sS-----------~iA~~i~~l~~g~~~ 53 (99)
|+||||+ .+|+.++.+.....+
T Consensus 154 FVEIGSte~eW~d~~a~~~vA~av~~~l~~~~~ 186 (282)
T 1yqe_A 154 FYEIGSTEEEWKDREAAEVVAEAMLDAIRAEKM 186 (282)
T ss_dssp EEEEEESHHHHTCHHHHHHHHHHHHHHHHCCCC
T ss_pred EEEeCCCHHHhCChHHHHHHHHHHHHHhccccc
Confidence 7899985 488998888775544
No 3
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=26.36 E-value=44 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=19.2
Q ss_pred cceEEEeccCCCceEe---cceeeeeEe
Q 048323 3 GSWIVRQSDGSTPCLL---GKAVDCNYI 27 (99)
Q Consensus 3 GpwiVr~aVg~~P~ll---Gk~l~~~y~ 27 (99)
.+|||.+.+ ++|.|+ |+|.+.+.|
T Consensus 181 ~~~VvQkYI-~~PlLi~~~grKFDlR~Y 207 (380)
T 3tig_A 181 QVHVIQKYL-ESPLLLEPGHRKFDIRSW 207 (380)
T ss_dssp SCEEEEECC-SSBCCBTTTTBCEEEEEE
T ss_pred CcEEEEecc-cCceeecCCCceeEEEEE
Confidence 578888888 489998 789988855
No 4
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=24.08 E-value=37 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=19.0
Q ss_pred eeEeeecCCCCCc---cccccceEEec
Q 048323 59 MAFLVQANTTGEL---PERLIGAVRVS 82 (99)
Q Consensus 59 ~gf~Ieg~~e~EL---PE~lLG~vRl~ 82 (99)
.||+||+.+++.. +...+|...+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 6999999887764 56689998874
No 5
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=21.51 E-value=58 Score=25.18 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=15.8
Q ss_pred eEEEech-----------HHHHHHHHhhhccc
Q 048323 32 LMLACSS-----------TVANGVLGLVIGVI 52 (99)
Q Consensus 32 YlEI~sS-----------~iA~~i~~l~~g~~ 52 (99)
|+||||+ .+|+.++.+.....
T Consensus 174 FVEIGSte~eW~d~~A~~~vA~av~~~l~~~~ 205 (298)
T 2gfq_A 174 FIEIGSSEEEWINDRAGEIIAETIIYVLDNYE 205 (298)
T ss_dssp EEEEEESHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHhCChHHHHHHHHHHHHHhccch
Confidence 7899985 48888888875443
No 6
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=19.59 E-value=35 Score=24.40 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=19.1
Q ss_pred eeEeeecCCCCCc---cccccceEEec
Q 048323 59 MAFLVQANTTGEL---PERLIGAVRVS 82 (99)
Q Consensus 59 ~gf~Ieg~~e~EL---PE~lLG~vRl~ 82 (99)
.||+||+.+++.. +...+|..++.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 5899999887764 56789998874
No 7
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=15.92 E-value=79 Score=21.56 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=12.4
Q ss_pred ceeEEEeeeEeeecCC
Q 048323 52 ITAVVVDMAFLVQANT 67 (99)
Q Consensus 52 ~~~lvvD~gf~Ieg~~ 67 (99)
+.-=++|-|+++||+.
T Consensus 28 InEdiLDqgYTVeG~~ 43 (118)
T 3npd_A 28 INEDILDQGYTVEGNQ 43 (118)
T ss_dssp SSSSEEEEEEEEETTE
T ss_pred hhhHHhhcceeechHH
Confidence 3345799999999974
No 8
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=13.89 E-value=1.4e+02 Score=19.11 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=26.2
Q ss_pred ecceeeeeEeeCCCeEEEechHHHHHHHHhhhcc
Q 048323 18 LGKAVDCNYIRGPKLMLACSSTVANGVLGLVIGV 51 (99)
Q Consensus 18 lGk~l~~~y~~g~nYlEI~sS~iA~~i~~l~~g~ 51 (99)
.|+.+..++..+..|+|..++.-|.++++ +.|+
T Consensus 39 ~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 39 FGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp TCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTC
T ss_pred CCCeEEEEEecCCEEEEECChHHHHHHHh-cCCe
Confidence 47777889999999999988888877777 5554
No 9
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=13.23 E-value=1.1e+02 Score=24.41 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=19.9
Q ss_pred eeCCCeEEE---echHHHHHHHHhhhcc
Q 048323 27 IRGPKLMLA---CSSTVANGVLGLVIGV 51 (99)
Q Consensus 27 ~~g~nYlEI---~sS~iA~~i~~l~~g~ 51 (99)
|+|++|+|+ |.+.+.+.++..+..+
T Consensus 103 ft~Ed~ve~~~hGg~~v~~~~l~~l~~~ 130 (482)
T 1xzp_A 103 YTGEDMVEVMCHGGPLVVKKLLDLFLKS 130 (482)
T ss_dssp SSSSCEEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCCCCEeeecCcCcHHHHHHHHHHHHHc
Confidence 467899996 5788889999888753
No 10
>4akm_A Lysosome-associated membrane glycoprotein 3; membrane protein, glycosylation, beta prism; HET: NAG; 2.69A {Homo sapiens}
Probab=12.77 E-value=84 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.6
Q ss_pred ccceEEEeccCCCceEecce
Q 048323 2 QGSWIVRQSDGSTPCLLGKA 21 (99)
Q Consensus 2 ~GpwiVr~aVg~~P~llGk~ 21 (99)
.|.|.|+- |+++||+-+.
T Consensus 4 tG~y~V~~--~n~tCila~m 21 (166)
T 4akm_A 4 TGIYQVLN--GSRLCIKAEM 21 (166)
T ss_dssp CEEEEEEE--TTEEEEEEEE
T ss_pred eeEEEEEC--CCcChhhhee
Confidence 58999988 5789998753
Done!