Query 048323
Match_columns 99
No_of_seqs 103 out of 164
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 14:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kkha1 d.14.1.5 (A:1-180) Mev 22.3 13 0.00098 23.0 1.0 19 1-20 1-19 (180)
2 d1xzpa3 d.250.1.2 (A:1-117) Tr 17.0 42 0.0031 20.7 2.5 23 27-49 71-96 (117)
3 d1yqea1 c.56.7.1 (A:1-278) Hyp 15.5 66 0.0048 22.8 3.6 19 31-49 149-178 (278)
4 d1unnc_ d.240.1.1 (C:) DNA pol 13.7 44 0.0032 19.5 1.8 24 71-95 87-110 (111)
5 d2fsra1 d.108.1.1 (A:4-167) Pr 13.5 39 0.0028 19.5 1.6 22 59-82 142-163 (164)
6 d2ga1a1 a.4.1.16 (A:1-102) Hyp 12.6 24 0.0017 21.8 0.3 16 10-25 39-54 (102)
7 d1p5dx4 d.129.2.1 (X:368-463) 12.4 75 0.0055 18.4 2.7 41 2-55 48-88 (96)
8 d1wf2a_ d.58.7.1 (A:) Heteroge 12.0 73 0.0053 18.0 2.5 33 19-51 41-73 (98)
9 d2pd4a1 c.2.1.2 (A:2-275) Enoy 10.8 56 0.0041 21.2 1.8 39 37-75 220-263 (274)
10 d1xxaa_ d.74.2.1 (A:) C-termin 10.8 44 0.0032 18.9 1.1 13 67-79 32-44 (71)
No 1
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.28 E-value=13 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=14.3
Q ss_pred CccceEEEeccCCCceEecc
Q 048323 1 MQGSWIVRQSDGSTPCLLGK 20 (99)
Q Consensus 1 ~~GpwiVr~aVg~~P~llGk 20 (99)
|.|+||+-+| +.|=+|+|.
T Consensus 1 ~~~~~~~~~a-Pgkv~L~GE 19 (180)
T d1kkha1 1 PRGSHMIIET-PSKVILFGE 19 (180)
T ss_dssp CTTCCEEEEE-EEEEEEECT
T ss_pred CCCCeEEEEc-CEEEEEEcc
Confidence 6899999998 446666664
No 2
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=17.01 E-value=42 Score=20.67 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=17.9
Q ss_pred eeCCCeEEE---echHHHHHHHHhhh
Q 048323 27 IRGPKLMLA---CSSTVANGVLGLVI 49 (99)
Q Consensus 27 ~~g~nYlEI---~sS~iA~~i~~l~~ 49 (99)
|.|++-+|| |+-.|.++++..+.
T Consensus 71 ~TGEd~vEi~~HG~~~i~~~il~~l~ 96 (117)
T d1xzpa3 71 YTGEDMVEVMCHGGPLVVKKLLDLFL 96 (117)
T ss_dssp SSSSCEEEEEECSCHHHHHHHHHHHH
T ss_pred ccccceEEEEeccchhHHHHHHHHhh
Confidence 456789996 67889999988764
No 3
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.53 E-value=66 Score=22.79 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=12.7
Q ss_pred CeEEEech-----------HHHHHHHHhhh
Q 048323 31 KLMLACSS-----------TVANGVLGLVI 49 (99)
Q Consensus 31 nYlEI~sS-----------~iA~~i~~l~~ 49 (99)
-|+||||+ .+|+.|+....
T Consensus 149 ~FiEIGSte~~W~d~~a~~~~A~~i~~~~~ 178 (278)
T d1yqea1 149 AFYEIGSTEEEWKDREAAEVVAEAMLDAIR 178 (278)
T ss_dssp EEEEEEESHHHHTCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHhCCcHHHHHHHHHHHhhcc
Confidence 47899985 36777765543
No 4
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]}
Probab=13.70 E-value=44 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.4
Q ss_pred ccccccceEEecccccCcccCCCCC
Q 048323 71 LPERLIGAVRVSYIELKSAIVPKLE 95 (99)
Q Consensus 71 LPE~lLG~vRl~~ld~~~A~~~~~~ 95 (99)
-|=||||. ++.+++...+.++.|+
T Consensus 87 ~piRLlGV-~v~~l~~~~~~QlsL~ 110 (111)
T d1unnc_ 87 RGVRLVGL-HVTLLDPQMERQLVLG 110 (111)
T ss_dssp CCEEEEEE-EEECCCCCCCCBCCCC
T ss_pred CCEeEEEE-EeecCCCCCcccCCCC
Confidence 37799997 8899988888887764
No 5
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.50 E-value=39 Score=19.51 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=16.3
Q ss_pred eeEeeecCCCCCccccccceEEec
Q 048323 59 MAFLVQANTTGELPERLIGAVRVS 82 (99)
Q Consensus 59 ~gf~Ieg~~e~ELPE~lLG~vRl~ 82 (99)
+||..||..+..-|+.+ .-|++
T Consensus 142 ~GF~~eg~~~~~~~~~~--~yr~~ 163 (164)
T d2fsra1 142 IGGTLDPLAPRSDPEDL--VYRYH 163 (164)
T ss_dssp TTCEECTTSCCSSTTCE--EEEEC
T ss_pred CCCEEeeeEcccCCCce--EEeeC
Confidence 69999999888877765 34544
No 6
>d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493 orthologue) {Anabaena variabilis [TaxId: 1172]}
Probab=12.60 E-value=24 Score=21.79 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=13.0
Q ss_pred ccCCCceEecceeeee
Q 048323 10 SDGSTPCLLGKAVDCN 25 (99)
Q Consensus 10 aVg~~P~llGk~l~~~ 25 (99)
..|++|||-|.+++..
T Consensus 39 v~gG~P~I~GTRI~V~ 54 (102)
T d2ga1a1 39 VCGGQARIRNTRIPVW 54 (102)
T ss_dssp SGGGCCEETTSCCBHH
T ss_pred ccCCcceEecccccHH
Confidence 3588999999998764
No 7
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.40 E-value=75 Score=18.37 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=28.3
Q ss_pred ccceEEEeccCCCceEecceeeeeEeeCCCeEEEechHHHHHHHHhhhccceeE
Q 048323 2 QGSWIVRQSDGSTPCLLGKAVDCNYIRGPKLMLACSSTVANGVLGLVIGVITAV 55 (99)
Q Consensus 2 ~GpwiVr~aVg~~P~llGk~l~~~y~~g~nYlEI~sS~iA~~i~~l~~g~~~~l 55 (99)
.| |+.-++=|+.|+|- =|+|=.+..-++.+...+...++.+
T Consensus 48 dg-W~liR~SnTEP~lr------------i~~Ea~s~~~~~~l~~~~~~~l~~i 88 (96)
T d1p5dx4 48 KG-WGLVRASNTTPVLV------------LRFEADTEEELERIKTVFRNQLKAV 88 (96)
T ss_dssp TE-EEEEEECSSSSEEE------------EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cc-EEEEEeCCCCCEEE------------EEEEECCHHHHHHHHHHHHHHHHHh
Confidence 35 99989999999886 2577666666666666666655543
No 8
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.99 E-value=73 Score=18.03 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.1
Q ss_pred cceeeeeEeeCCCeEEEechHHHHHHHHhhhcc
Q 048323 19 GKAVDCNYIRGPKLMLACSSTVANGVLGLVIGV 51 (99)
Q Consensus 19 Gk~l~~~y~~g~nYlEI~sS~iA~~i~~l~~g~ 51 (99)
|+-..++-.+|..|+|.....-|...+..+.|+
T Consensus 41 G~i~~~~i~rg~aFV~f~~~~~A~~Ai~~lng~ 73 (98)
T d1wf2a_ 41 GKIVGCSVHKGFAFVQYVNERNARAAVAGEDGR 73 (98)
T ss_dssp SCEEEEEEETEEEEEEESSHHHHHHHHHTTTTC
T ss_pred CCEEEEEEeCCeEEEEECCHHHHHHHHHHcCCC
Confidence 445556667888999988888888777766654
No 9
>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}
Probab=10.84 E-value=56 Score=21.17 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=30.3
Q ss_pred chHHHHHHHHhhhc---cce--eEEEeeeEeeecCCCCCccccc
Q 048323 37 SSTVANGVLGLVIG---VIT--AVVVDMAFLVQANTTGELPERL 75 (99)
Q Consensus 37 sS~iA~~i~~l~~g---~~~--~lvvD~gf~Ieg~~e~ELPE~l 75 (99)
.+-||+-++.|+.. |++ .+.||=||.|.|-.+-|++|..
T Consensus 220 pedIA~~v~fL~S~~s~~itG~~i~vDGG~~~~g~~~~~~~~~~ 263 (274)
T d2pd4a1 220 LEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEKDNK 263 (274)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBSSCCCTTCTTT
T ss_pred HHHHHHHHHHHhChhhCCCcCceEEECCChhhccCCcccccccc
Confidence 34589999988864 344 6999999999998887777753
No 10
>d1xxaa_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Escherichia coli [TaxId: 562]}
Probab=10.77 E-value=44 Score=18.88 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.4
Q ss_pred CCCCccccccceE
Q 048323 67 TTGELPERLIGAV 79 (99)
Q Consensus 67 ~e~ELPE~lLG~v 79 (99)
+..++||.++|++
T Consensus 32 D~~~~~e~I~GTi 44 (71)
T d1xxaa_ 32 DSLGKAEGILGTI 44 (71)
T ss_dssp TTTTTTTTEEEEE
T ss_pred HcCCCCCcEEEEE
Confidence 4567899999986
Done!