BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048325
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
+RRS N QP++WD +++ SL+ +T E + + L +V+ + E +P+ QLELI
Sbjct: 5 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE---KMEPVQQLELI 61
Query: 83 DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNE----NLYATSLEFRLLRQHGYNVSQ 137
+L+ L L+ F+ EI+ IL IYN NE +LY T+L FRLLRQHG+N+SQ
Sbjct: 62 HDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
+R A+ QPSIW FL+ N +E+ +K+ + LK +V+ M V+ +L I
Sbjct: 21 MRPKADFQPSIWGDLFLNCPDKNIDAET-EKRHQQLKEEVRKMI--VAPMANSTQKLAFI 77
Query: 83 DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
D++QRL ++YHF EIE L NIY+N +D +LY TS+ FRLLR+HGYNVS
Sbjct: 78 DSVQRLGVSYHFTKEIEDELENIYHNNND--AENDLYTTSIRFRLLREHGYNVS 129
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
RRSA+ +P+ WD+DFL S + + E YK + + L+ +V+ N + L LELI
Sbjct: 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKA--EFLTLLELI 71
Query: 83 DNLQRLRLAYHFETEIESILHNIYNNKD-DKWKNENLYATSLEFRLLRQHGYNVSQ 137
DN+QRL L Y FE++I L ++ D +L+AT+L FRLLRQHG+ VSQ
Sbjct: 72 DNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L L
Sbjct: 15 IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 72
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 124
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L L
Sbjct: 15 IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 72
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 124
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y ++ E LK + ++M ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNL 70
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
+VR A+ PS+W FL N +E Y ++ E LK + ++M ++ K D L L
Sbjct: 13 IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNL 70
Query: 82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
ID ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
VR A+ PS+W FL N +E Y K+ E LK + + M ++ K D L LI
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNLI 58
Query: 83 DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
D ++RL ++YHFE EI+ IL IYN + +L ++L+FRLLRQHG+N+S
Sbjct: 59 DTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 109
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 10/121 (8%)
Query: 23 VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
+RRS N PS WD +F+ SL ++ + + + L VK E+ + QLELI
Sbjct: 1 MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKM---ELEKETDQIRQLELI 57
Query: 83 DNLQRLRLAYHFETEIESIL------HNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
D+LQR+ L+ HF+ E + IL H+ Y N K + +LY+TSL FRLLR+HG+ V+
Sbjct: 58 DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK-EERDLYSTSLAFRLLREHGFQVA 116
Query: 137 Q 137
Q
Sbjct: 117 Q 117
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 8/115 (6%)
Query: 25 RSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDN 84
R+ QP++WD + S + E + + + +VK M E + +LELID+
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQE---EVDSIRRLELIDD 92
Query: 85 LQRLRLAYHFETEIESILHNIY--NNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
L+RL ++ HFE EI IL++ Y NN+ D+ +LY+T+L FRLLRQ+ ++VSQ
Sbjct: 93 LRRLGISCHFEREIVEILNSKYYTNNEIDE---RDLYSTALRFRLLRQYDFSVSQ 144
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 34/135 (25%)
Query: 12 FASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSV 71
F S+ TAAV R+ N + DFL NF KK G H+
Sbjct: 228 FLSSPASTAAVFMRTGNKKCL----DFL-----NFV---LKKFGNHVP------------ 263
Query: 72 TNKPLDQLE---LIDNLQRLRLAYHFETEIESILHNIYNNKDDK---WKNEN----LYAT 121
+ PLD E +D ++RL + HF+ EI+ L +Y++ D++ W EN + T
Sbjct: 264 CHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDT 323
Query: 122 SLEFRLLRQHGYNVS 136
++ R+LR HGYNVS
Sbjct: 324 AMGLRILRLHGYNVS 338
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 35 DHDFLHS---LSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLE---LIDNLQRL 88
D FL S +C F K E L + N V P+D LE ++DN+ RL
Sbjct: 253 DGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLY-PVDLLERLLIVDNIVRL 311
Query: 89 RLAYHFETEIESILHNIY---NNKDDKWKNEN----LYATSLEFRLLRQHGYNVS 136
+ HFE EI+ L +Y N + W N L T+L FRLLR H YNVS
Sbjct: 312 GIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVS 366
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 19 TAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTN 67
T+ ++RR+AN P++W +D +HSL + SY+++ E L ++K M N
Sbjct: 20 TSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN 68
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 56 EHLKGKVKTMTNEVSVTNKPLDQLE---LIDNLQRLRLAYHFETEIESIL---HNIYNNK 109
E+L+ VK V P+D E ++D LQRL ++ +FE EI+ L H + +
Sbjct: 224 EYLRNAVKRFNGGVPNVF-PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDN 282
Query: 110 DDKWKN----ENLYATSLEFRLLRQHGYNVS 136
W +++ T++ FRLLRQHGY VS
Sbjct: 283 GICWARCSHVQDIDDTAMAFRLLRQHGYQVS 313
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 76 LDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK---WKNENLY----ATSLEFRLL 128
L++L L+DN++ L + HF+ EI+ L +Y + ++ W ++L T+L R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 129 RQHGYNVS 136
R HGYNVS
Sbjct: 307 RMHGYNVS 314
>pdb|3BJN|A Chain A, Crystal Structure Of C-terminal Domain Of Putative
Transcriptional Regulator From Vibrio Cholerae, Targeted
Domain 79-240
Length = 165
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
Query: 87 RLRLAYHFETEIESILHNIYNNKD---DKWKNENLYATSLEFRLLRQHGYNVS 136
++ LAY E IL Y +D DKW++E F +R+HGY VS
Sbjct: 71 KVXLAYXPAARCEKILR--YFGEDPTLDKWQSE--------FEKIRRHGYAVS 113
>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Pyridoxal 5'-Phosphate
pdb|1GEX|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Histidinol-Phosphate
pdb|1GEY|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|1IJI|A Chain A, Crystal Structure Of L-histidinol Phosphate
Aminotransferase With Plp
Length = 356
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 107 NNKDDKWKNENLYATSLEFRLLRQ 130
D W N N Y T++EF+L +Q
Sbjct: 27 GGNGDVWLNANEYPTAVEFQLTQQ 50
>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase Complexed With L-Histidinol
pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Pyridoxal-5'-Phosphate
Length = 356
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 107 NNKDDKWKNENLYATSLEFRLLRQ 130
D W N N Y T++EF+L +Q
Sbjct: 27 GGNGDVWLNANEYPTAVEFQLTQQ 50
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 222 LESILHRIYTHQSDVW 237
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 195 LESILHRIYTHQSDVW 210
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 195 LESILHRIYTHQSDVW 210
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 195 LESILHRIYTHQSDVW 210
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 195 LESILHRIYTHQSDVW 210
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 194 LESILHRIYTHQSDVW 209
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 185 LESILHRIYTHQSDVW 200
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 191 LESILHRIYTHQSDVW 206
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 189 LESILHRIYTHQSDVW 204
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 188 LESILHRIYTHQSDVW 203
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 188 LESILHRIYTHQSDVW 203
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 191 LESILHRIYTHQSDVW 206
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 191 LESILHRIYTHQSDVW 206
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 190 LESILHRIYTHQSDVW 205
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 190 LESILHRIYTHQSDVW 205
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 190 LESILHRIYTHQSDVW 205
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 191 LESILHRIYTHQSDVW 206
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 188 LESILHRIYTHQSDVW 203
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 190 LESILHRIYTHQSDVW 205
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 190 LESILHRIYTHQSDVW 205
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 192 LESILHRIYTHQSDVW 207
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 189 LESILHRIYTHQSDVW 204
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 188 LESILHRIYTHQSDVW 203
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 192 LESILHRIYTHQSDVW 207
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 198 LESILHRIYTHQSDVW 213
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 188 LESILHRIYTHQSDVW 203
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 188 LESILHRIYTHQSDVW 203
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 182 LESILHRIYTHQSDVW 197
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 98 IESILHNIYNNKDDKW 113
+ESILH IY ++ D W
Sbjct: 213 LESILHRIYTHQSDVW 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,063,785
Number of Sequences: 62578
Number of extensions: 145084
Number of successful extensions: 403
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 52
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)