Query 048328
Match_columns 318
No_of_seqs 257 out of 1625
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 8.5E-15 1.8E-19 141.9 8.1 79 39-118 206-285 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 2.6E-13 5.6E-18 94.1 2.4 44 63-107 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.2 1.2E-11 2.6E-16 115.0 4.8 74 38-111 148-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 3.4E-11 7.4E-16 92.7 3.5 46 61-107 18-73 (73)
5 COG5540 RING-finger-containing 99.1 2.5E-11 5.5E-16 115.0 2.3 85 25-112 278-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.1 3.4E-10 7.4E-15 109.9 7.6 69 42-113 269-347 (491)
7 PLN03208 E3 ubiquitin-protein 98.9 2.1E-09 4.5E-14 96.9 5.2 57 60-120 16-88 (193)
8 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.7E-09 3.7E-14 76.9 2.7 47 61-111 1-48 (50)
9 KOG0823 Predicted E3 ubiquitin 98.8 2.5E-09 5.4E-14 98.3 3.5 58 60-121 45-105 (230)
10 PF12861 zf-Apc11: Anaphase-pr 98.8 3.5E-09 7.5E-14 83.8 3.5 52 61-112 20-83 (85)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.6E-14 71.6 2.9 39 65-106 1-39 (39)
12 cd00162 RING RING-finger (Real 98.8 5.6E-09 1.2E-13 70.2 3.7 44 64-110 1-45 (45)
13 KOG0317 Predicted E3 ubiquitin 98.8 3.9E-09 8.5E-14 99.7 3.0 49 62-114 239-287 (293)
14 KOG0320 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 91.0 5.3 53 61-115 130-182 (187)
15 PHA02926 zinc finger-like prot 98.7 5.3E-09 1.1E-13 95.9 2.4 53 60-112 168-231 (242)
16 PF15227 zf-C3HC4_4: zinc fing 98.7 8.2E-09 1.8E-13 71.4 2.7 38 65-106 1-42 (42)
17 smart00504 Ubox Modified RING 98.7 2.3E-08 4.9E-13 73.5 4.3 48 63-114 2-49 (63)
18 TIGR00599 rad18 DNA repair pro 98.6 2.8E-08 6E-13 98.7 4.4 52 58-113 22-73 (397)
19 KOG0802 E3 ubiquitin ligase [P 98.6 1.4E-08 3E-13 104.7 2.1 51 61-112 290-342 (543)
20 PF00097 zf-C3HC4: Zinc finger 98.6 3.4E-08 7.4E-13 67.0 2.7 39 65-106 1-41 (41)
21 PF14634 zf-RING_5: zinc-RING 98.5 7E-08 1.5E-12 67.0 3.2 44 64-108 1-44 (44)
22 smart00184 RING Ring finger. E 98.5 1.3E-07 2.8E-12 61.3 3.3 38 65-106 1-39 (39)
23 KOG2164 Predicted E3 ubiquitin 98.5 8.5E-08 1.8E-12 96.7 3.5 56 62-121 186-246 (513)
24 COG5194 APC11 Component of SCF 98.4 9.7E-08 2.1E-12 74.5 2.3 51 63-113 21-83 (88)
25 COG5219 Uncharacterized conser 98.4 1.1E-07 2.3E-12 101.2 0.9 73 39-111 1446-1523(1525)
26 KOG0287 Postreplication repair 98.3 1.5E-07 3.3E-12 90.8 0.7 51 61-115 22-72 (442)
27 COG5574 PEX10 RING-finger-cont 98.2 6.2E-07 1.3E-11 84.1 2.9 50 61-114 214-265 (271)
28 KOG1493 Anaphase-promoting com 98.2 4E-07 8.6E-12 70.6 -0.1 53 60-112 18-82 (84)
29 KOG2930 SCF ubiquitin ligase, 98.1 7.8E-07 1.7E-11 72.6 1.5 53 60-112 44-109 (114)
30 KOG2177 Predicted E3 ubiquitin 98.1 8.7E-07 1.9E-11 79.9 1.9 45 59-107 10-54 (386)
31 COG5432 RAD18 RING-finger-cont 98.1 1E-06 2.2E-11 83.7 2.0 48 62-113 25-72 (391)
32 PF04564 U-box: U-box domain; 98.1 1.4E-06 3E-11 66.9 2.2 51 61-115 3-54 (73)
33 KOG0828 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 87.2 2.1 51 61-112 570-635 (636)
34 TIGR00570 cdk7 CDK-activating 98.1 3.3E-06 7.1E-11 81.4 4.1 56 62-118 3-61 (309)
35 KOG1734 Predicted RING-contain 98.0 1.1E-06 2.3E-11 82.8 0.2 56 60-116 222-286 (328)
36 PF11793 FANCL_C: FANCL C-term 98.0 1.3E-06 2.7E-11 66.9 -0.0 50 62-111 2-66 (70)
37 PF13445 zf-RING_UBOX: RING-ty 98.0 5.1E-06 1.1E-10 57.9 2.9 38 65-104 1-43 (43)
38 KOG0804 Cytoplasmic Zn-finger 98.0 3.2E-06 6.9E-11 84.3 2.1 53 56-111 169-222 (493)
39 smart00744 RINGv The RING-vari 97.9 8.7E-06 1.9E-10 58.1 3.1 42 64-107 1-49 (49)
40 KOG0311 Predicted E3 ubiquitin 97.9 2.2E-06 4.7E-11 83.3 -0.7 56 59-117 40-96 (381)
41 KOG0827 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 79.6 1.9 54 62-115 4-60 (465)
42 KOG0824 Predicted E3 ubiquitin 97.6 2.4E-05 5.2E-10 74.8 2.1 54 62-119 7-61 (324)
43 KOG3970 Predicted E3 ubiquitin 97.6 2.7E-05 5.9E-10 71.9 2.3 87 12-114 14-108 (299)
44 KOG0825 PHD Zn-finger protein 97.5 3.2E-05 7E-10 81.5 1.7 51 62-113 123-173 (1134)
45 PF14835 zf-RING_6: zf-RING of 97.5 2.3E-05 5E-10 59.0 0.4 48 62-114 7-54 (65)
46 KOG0978 E3 ubiquitin ligase in 97.4 6.4E-05 1.4E-09 79.2 1.6 50 62-115 643-693 (698)
47 KOG1039 Predicted E3 ubiquitin 97.4 9.1E-05 2E-09 72.6 2.4 53 60-112 159-222 (344)
48 KOG4265 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 71.4 2.7 47 62-112 290-337 (349)
49 KOG1785 Tyrosine kinase negati 97.3 0.00017 3.6E-09 71.4 3.2 50 64-117 371-422 (563)
50 KOG4172 Predicted E3 ubiquitin 97.1 0.00011 2.5E-09 53.7 0.0 46 62-111 7-54 (62)
51 KOG0297 TNF receptor-associate 97.1 0.00031 6.7E-09 70.1 2.6 55 59-116 18-72 (391)
52 KOG1002 Nucleotide excision re 97.0 0.00026 5.6E-09 72.2 1.8 72 25-113 512-588 (791)
53 KOG4159 Predicted E3 ubiquitin 97.0 0.00037 7.9E-09 69.7 2.8 51 59-113 81-131 (398)
54 KOG1645 RING-finger-containing 97.0 0.00039 8.5E-09 69.0 2.9 50 62-111 4-56 (463)
55 KOG4445 Uncharacterized conser 96.8 0.00038 8.2E-09 66.8 0.8 52 61-113 114-188 (368)
56 KOG1941 Acetylcholine receptor 96.6 0.0011 2.3E-08 65.8 2.4 46 62-108 365-413 (518)
57 PF11789 zf-Nse: Zinc-finger o 96.6 0.00097 2.1E-08 49.1 1.5 43 60-105 9-53 (57)
58 KOG4692 Predicted E3 ubiquitin 96.5 0.0024 5.3E-08 62.6 3.9 53 58-114 418-470 (489)
59 KOG2879 Predicted E3 ubiquitin 96.5 0.0023 5.1E-08 60.7 3.4 49 60-111 237-287 (298)
60 KOG2660 Locus-specific chromos 96.4 0.00085 1.8E-08 65.0 0.2 51 60-113 13-63 (331)
61 COG5152 Uncharacterized conser 96.2 0.0024 5.1E-08 58.3 1.7 44 63-110 197-240 (259)
62 KOG1428 Inhibitor of type V ad 95.5 0.0086 1.9E-07 67.3 3.0 68 44-112 3467-3545(3738)
63 PF10367 Vps39_2: Vacuolar sor 95.5 0.0053 1.1E-07 49.1 0.9 33 60-94 76-108 (109)
64 PF14570 zf-RING_4: RING/Ubox 95.4 0.012 2.7E-07 42.0 2.5 45 65-110 1-47 (48)
65 KOG0801 Predicted E3 ubiquitin 95.4 0.0055 1.2E-07 54.3 0.8 41 49-90 164-204 (205)
66 KOG1813 Predicted E3 ubiquitin 95.4 0.0053 1.1E-07 58.9 0.7 45 63-111 242-286 (313)
67 KOG1814 Predicted E3 ubiquitin 95.2 0.0099 2.2E-07 59.3 2.1 48 61-109 183-238 (445)
68 KOG1952 Transcription factor N 95.2 0.0097 2.1E-07 63.9 2.0 50 61-110 190-246 (950)
69 KOG3039 Uncharacterized conser 95.2 0.017 3.6E-07 54.4 3.3 55 62-116 221-275 (303)
70 PF05883 Baculo_RING: Baculovi 95.1 0.011 2.4E-07 50.8 1.8 43 62-105 26-74 (134)
71 COG5222 Uncharacterized conser 95.0 0.015 3.3E-07 56.0 2.5 43 63-108 275-318 (427)
72 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.034 7.5E-07 52.4 4.3 57 60-117 111-167 (260)
73 PHA03096 p28-like protein; Pro 94.7 0.017 3.6E-07 55.6 2.0 46 63-108 179-231 (284)
74 KOG3268 Predicted E3 ubiquitin 94.6 0.021 4.5E-07 51.4 2.2 31 83-113 189-230 (234)
75 PF07800 DUF1644: Protein of u 94.5 0.023 5.1E-07 50.1 2.3 58 61-118 1-98 (162)
76 PHA02862 5L protein; Provision 94.4 0.031 6.8E-07 48.7 2.7 48 62-114 2-56 (156)
77 PF14447 Prok-RING_4: Prokaryo 94.4 0.026 5.6E-07 41.4 1.8 45 63-113 8-52 (55)
78 KOG4739 Uncharacterized protei 94.3 0.016 3.6E-07 54.0 0.9 47 64-114 5-51 (233)
79 PF12906 RINGv: RING-variant d 94.0 0.046 9.9E-07 38.6 2.5 41 65-106 1-47 (47)
80 PHA02825 LAP/PHD finger-like p 93.8 0.062 1.3E-06 47.5 3.4 50 60-113 6-61 (162)
81 KOG4275 Predicted E3 ubiquitin 93.8 0.012 2.6E-07 56.5 -1.1 42 62-111 300-342 (350)
82 PF08746 zf-RING-like: RING-li 93.4 0.045 9.7E-07 38.0 1.5 41 65-106 1-43 (43)
83 PF10272 Tmpp129: Putative tra 93.0 0.12 2.6E-06 51.3 4.4 30 84-113 311-353 (358)
84 KOG0826 Predicted E3 ubiquitin 93.0 0.074 1.6E-06 51.9 2.9 47 61-110 299-345 (357)
85 COG5175 MOT2 Transcriptional r 93.0 0.043 9.3E-07 53.8 1.2 58 60-118 12-71 (480)
86 KOG1571 Predicted E3 ubiquitin 92.9 0.05 1.1E-06 53.6 1.5 43 62-111 305-347 (355)
87 COG5236 Uncharacterized conser 92.8 0.095 2.1E-06 51.6 3.3 49 60-112 59-109 (493)
88 KOG2114 Vacuolar assembly/sort 92.6 0.058 1.3E-06 58.2 1.7 42 61-108 839-880 (933)
89 KOG1001 Helicase-like transcri 91.6 0.047 1E-06 58.3 -0.3 50 63-117 455-506 (674)
90 KOG2932 E3 ubiquitin ligase in 91.2 0.087 1.9E-06 51.2 1.1 42 64-110 92-133 (389)
91 KOG4185 Predicted E3 ubiquitin 90.2 0.19 4.2E-06 47.7 2.4 47 63-110 4-54 (296)
92 KOG1940 Zn-finger protein [Gen 89.7 0.2 4.4E-06 48.0 2.1 46 62-108 158-204 (276)
93 KOG3002 Zn finger protein [Gen 89.7 0.24 5.3E-06 48.0 2.7 46 60-111 46-91 (299)
94 PF14446 Prok-RING_1: Prokaryo 89.3 0.41 8.8E-06 35.1 2.9 35 61-95 4-38 (54)
95 PF05290 Baculo_IE-1: Baculovi 89.1 0.31 6.8E-06 42.0 2.6 52 62-113 80-134 (140)
96 KOG0827 Predicted E3 ubiquitin 88.6 0.038 8.3E-07 55.0 -3.7 51 63-114 197-248 (465)
97 KOG0298 DEAD box-containing he 88.4 0.16 3.4E-06 57.2 0.4 46 60-108 1151-1196(1394)
98 TIGR00622 ssl1 transcription f 87.5 0.64 1.4E-05 38.9 3.4 74 34-107 25-110 (112)
99 KOG4367 Predicted Zn-finger pr 86.9 0.74 1.6E-05 46.8 4.1 34 60-97 2-35 (699)
100 KOG3800 Predicted E3 ubiquitin 86.2 0.6 1.3E-05 45.0 2.9 55 64-119 2-59 (300)
101 KOG2034 Vacuolar sorting prote 84.5 0.53 1.1E-05 51.3 1.8 36 60-97 815-850 (911)
102 KOG1100 Predicted E3 ubiquitin 84.4 0.5 1.1E-05 43.5 1.4 40 65-112 161-201 (207)
103 PF03854 zf-P11: P-11 zinc fin 84.2 0.35 7.5E-06 34.6 0.2 44 64-113 4-48 (50)
104 KOG0309 Conserved WD40 repeat- 84.2 0.6 1.3E-05 50.2 2.0 23 83-105 1047-1069(1081)
105 PF07975 C1_4: TFIIH C1-like d 83.7 0.75 1.6E-05 33.3 1.8 43 65-107 2-50 (51)
106 KOG0825 PHD Zn-finger protein 83.1 0.6 1.3E-05 50.4 1.5 54 61-114 95-157 (1134)
107 KOG2817 Predicted E3 ubiquitin 82.0 1.1 2.4E-05 44.8 2.9 46 62-108 334-382 (394)
108 KOG3053 Uncharacterized conser 81.1 0.79 1.7E-05 43.6 1.4 50 61-111 19-82 (293)
109 COG5220 TFB3 Cdk activating ki 81.0 0.68 1.5E-05 43.7 0.9 49 61-109 9-62 (314)
110 KOG3899 Uncharacterized conser 80.8 0.84 1.8E-05 44.2 1.5 85 28-115 245-369 (381)
111 KOG0802 E3 ubiquitin ligase [P 80.3 1.2 2.6E-05 46.3 2.6 47 61-115 478-524 (543)
112 KOG1812 Predicted E3 ubiquitin 79.4 0.79 1.7E-05 45.9 0.9 38 61-99 145-183 (384)
113 COG5183 SSM4 Protein involved 78.3 1.4 3.1E-05 47.8 2.4 57 60-117 10-72 (1175)
114 KOG3161 Predicted E3 ubiquitin 77.6 0.89 1.9E-05 48.2 0.6 45 60-107 9-53 (861)
115 KOG4362 Transcriptional regula 77.6 0.67 1.5E-05 49.4 -0.3 48 61-112 20-70 (684)
116 KOG1609 Protein involved in mR 75.3 1.4 3.1E-05 41.5 1.4 51 62-113 78-136 (323)
117 KOG0269 WD40 repeat-containing 75.0 2.5 5.5E-05 45.6 3.1 41 63-105 780-820 (839)
118 KOG4718 Non-SMC (structural ma 73.7 1.8 3.9E-05 40.1 1.5 45 63-110 182-226 (235)
119 KOG2807 RNA polymerase II tran 72.2 3 6.5E-05 41.0 2.7 70 38-108 304-375 (378)
120 PF02891 zf-MIZ: MIZ/SP-RING z 68.8 6 0.00013 28.2 3.0 43 63-109 3-50 (50)
121 KOG2068 MOT2 transcription fac 67.7 4.8 0.0001 39.6 3.0 48 63-111 250-298 (327)
122 PF10571 UPF0547: Uncharacteri 66.7 3.1 6.7E-05 25.9 1.0 23 64-88 2-24 (26)
123 KOG1812 Predicted E3 ubiquitin 62.5 3.5 7.5E-05 41.4 1.0 43 63-106 307-351 (384)
124 PF13901 DUF4206: Domain of un 62.3 6.3 0.00014 35.9 2.6 40 62-107 152-196 (202)
125 COG5109 Uncharacterized conser 61.4 8.1 0.00018 38.0 3.2 49 59-108 333-384 (396)
126 KOG3113 Uncharacterized conser 59.9 5.6 0.00012 37.9 1.8 52 63-116 112-163 (293)
127 PLN02436 cellulose synthase A 59.1 10 0.00023 42.7 4.0 51 62-112 36-90 (1094)
128 PLN02189 cellulose synthase 59.0 10 0.00023 42.5 4.0 51 62-112 34-88 (1040)
129 KOG1815 Predicted E3 ubiquitin 58.9 5.2 0.00011 40.6 1.6 36 61-99 69-104 (444)
130 PF13719 zinc_ribbon_5: zinc-r 57.3 6.7 0.00015 26.1 1.4 27 63-89 3-36 (37)
131 smart00249 PHD PHD zinc finger 56.9 8.1 0.00018 25.3 1.8 31 64-95 1-31 (47)
132 KOG3579 Predicted E3 ubiquitin 56.6 17 0.00037 35.3 4.5 39 61-100 267-306 (352)
133 PF01363 FYVE: FYVE zinc finge 54.4 7.5 0.00016 28.7 1.4 37 60-96 7-43 (69)
134 KOG0824 Predicted E3 ubiquitin 54.4 5 0.00011 39.1 0.5 50 60-112 103-152 (324)
135 KOG1829 Uncharacterized conser 53.9 4.9 0.00011 42.4 0.5 43 62-108 511-558 (580)
136 PLN02400 cellulose synthase 51.5 13 0.00028 42.0 3.2 51 62-112 36-90 (1085)
137 KOG3005 GIY-YIG type nuclease 51.4 8.7 0.00019 36.8 1.6 49 63-111 183-243 (276)
138 PLN02638 cellulose synthase A 49.6 17 0.00038 41.0 3.8 51 62-112 17-71 (1079)
139 PF00628 PHD: PHD-finger; Int 49.3 11 0.00024 26.0 1.5 43 64-107 1-49 (51)
140 PF06844 DUF1244: Protein of u 49.1 10 0.00022 29.0 1.3 13 87-99 11-23 (68)
141 KOG2041 WD40 repeat protein [G 49.1 9.8 0.00021 41.4 1.7 46 62-111 1131-1185(1189)
142 PF13717 zinc_ribbon_4: zinc-r 48.5 13 0.00028 24.7 1.7 27 63-89 3-36 (36)
143 KOG3039 Uncharacterized conser 46.8 12 0.00025 35.8 1.7 32 63-98 44-75 (303)
144 PF14569 zf-UDP: Zinc-binding 46.1 28 0.00061 27.5 3.4 52 61-112 8-63 (80)
145 PF04216 FdhE: Protein involve 44.7 3.8 8.1E-05 39.2 -2.0 47 62-108 172-219 (290)
146 smart00647 IBR In Between Ring 44.2 7.8 0.00017 27.7 0.1 21 76-96 38-58 (64)
147 KOG3842 Adaptor protein Pellin 43.7 21 0.00046 35.2 3.0 52 61-113 340-416 (429)
148 smart00132 LIM Zinc-binding do 43.4 19 0.00042 22.6 1.9 36 65-110 2-37 (39)
149 PF04710 Pellino: Pellino; In 43.1 8 0.00017 39.0 0.0 51 62-113 328-403 (416)
150 smart00064 FYVE Protein presen 40.1 27 0.00058 25.6 2.5 36 62-97 10-45 (68)
151 cd00065 FYVE FYVE domain; Zinc 39.7 21 0.00046 25.1 1.8 35 63-97 3-37 (57)
152 PF06906 DUF1272: Protein of u 37.6 63 0.0014 24.0 4.0 46 63-113 6-54 (57)
153 KOG2066 Vacuolar assembly/sort 36.1 14 0.0003 40.4 0.4 45 61-107 783-831 (846)
154 KOG2789 Putative Zn-finger pro 34.0 25 0.00054 35.7 1.8 50 63-114 75-148 (482)
155 PF11023 DUF2614: Protein of u 33.6 38 0.00083 28.5 2.6 32 78-115 69-100 (114)
156 PF14311 DUF4379: Domain of un 33.3 32 0.00069 24.5 1.9 25 81-106 31-55 (55)
157 PRK04023 DNA polymerase II lar 33.2 37 0.0008 38.3 3.1 48 60-113 624-676 (1121)
158 KOG1245 Chromatin remodeling c 33.1 19 0.00042 41.9 1.0 50 60-110 1106-1159(1404)
159 PF02318 FYVE_2: FYVE-type zin 32.8 28 0.0006 28.9 1.7 35 61-95 53-88 (118)
160 KOG0956 PHD finger protein AF1 32.5 13 0.00027 40.2 -0.5 48 63-110 118-181 (900)
161 PF00412 LIM: LIM domain; Int 31.9 28 0.00062 24.2 1.4 40 65-114 1-40 (58)
162 KOG3799 Rab3 effector RIM1 and 29.7 24 0.00051 30.8 0.8 18 58-75 61-79 (169)
163 TIGR01562 FdhE formate dehydro 29.1 16 0.00034 35.7 -0.5 46 62-108 184-232 (305)
164 KOG1356 Putative transcription 28.6 19 0.00041 39.6 0.0 34 62-97 229-262 (889)
165 PF04710 Pellino: Pellino; In 28.5 19 0.00041 36.4 0.0 45 62-110 277-338 (416)
166 PLN02915 cellulose synthase A 28.3 65 0.0014 36.5 4.0 52 61-112 14-69 (1044)
167 PF07191 zinc-ribbons_6: zinc- 26.6 9.1 0.0002 29.5 -2.0 40 63-111 2-41 (70)
168 PF10497 zf-4CXXC_R1: Zinc-fin 26.0 76 0.0016 26.1 3.1 47 62-108 7-69 (105)
169 COG3492 Uncharacterized protei 25.8 34 0.00074 27.9 1.0 13 87-99 42-54 (104)
170 PF13832 zf-HC5HC2H_2: PHD-zin 25.5 48 0.001 26.6 1.9 33 62-95 55-87 (110)
171 KOG4218 Nuclear hormone recept 24.3 25 0.00054 35.1 -0.0 14 61-74 14-27 (475)
172 COG5151 SSL1 RNA polymerase II 24.2 75 0.0016 31.4 3.2 71 38-108 336-418 (421)
173 PF05605 zf-Di19: Drought indu 24.2 30 0.00065 24.6 0.4 12 62-73 2-13 (54)
174 PRK03564 formate dehydrogenase 24.0 27 0.0006 34.1 0.2 47 61-108 186-234 (309)
175 PLN02195 cellulose synthase A 23.3 72 0.0016 35.9 3.2 50 62-111 6-59 (977)
176 PRK11088 rrmA 23S rRNA methylt 22.8 51 0.0011 30.7 1.8 25 63-88 3-27 (272)
177 COG1545 Predicted nucleic-acid 22.6 52 0.0011 28.3 1.6 23 80-110 31-53 (140)
178 KOG2979 Protein involved in DN 21.7 53 0.0012 31.4 1.6 44 62-108 176-221 (262)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.5e-15 Score=141.88 Aligned_cols=79 Identities=29% Similarity=0.752 Sum_probs=66.0
Q ss_pred CCCHHHHhhccceeecccCCCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCC-CCCCcccCCCCCCccC
Q 048328 39 GLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRAPILSGAFVA 117 (318)
Q Consensus 39 GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~-tCP~CR~~i~~~~~~~ 117 (318)
.+.+..++++|..+|+..........|+||+|+|..++.++.|| |+|.||..||++||.... .||+|+..+.......
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE 284 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence 56788999999999987654333358999999999999999999 999999999999998865 5999999876654443
Q ss_pred C
Q 048328 118 Q 118 (318)
Q Consensus 118 ~ 118 (318)
.
T Consensus 285 ~ 285 (348)
T KOG4628|consen 285 P 285 (348)
T ss_pred C
Confidence 3
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.36 E-value=2.6e-13 Score=94.10 Aligned_cols=44 Identities=48% Similarity=1.275 Sum_probs=40.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
.+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999888899998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.20 E-value=1.2e-11 Score=115.03 Aligned_cols=74 Identities=26% Similarity=0.699 Sum_probs=57.3
Q ss_pred CCCCHHHHhhccceeecccC--CCCCCccccccccccccCCc----eeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 38 IGLPQSVIDSIAVFKYKKDV--GLIEGTDCSVCLSEFQEDES----LRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 38 ~GL~~~~I~~Lp~~~~~~~~--~l~e~~~C~ICle~f~~~~~----~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.|..+.+|+.+|.+...... ....+.+|+||++.+..+.. +..++.|+|.||..||..|+..+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 46788999999998755332 22456899999998765431 2234359999999999999999999999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.13 E-value=3.4e-11 Score=92.72 Aligned_cols=46 Identities=35% Similarity=1.034 Sum_probs=36.0
Q ss_pred CCccccccccccccC----------CceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 61 EGTDCSVCLSEFQED----------ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 61 e~~~C~ICle~f~~~----------~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
.+..|+||++.|..+ ..+...+ |||.||..||.+||..+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 355699999999432 2334444 999999999999999999999997
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.5e-11 Score=115.04 Aligned_cols=85 Identities=32% Similarity=0.723 Sum_probs=62.3
Q ss_pred CCCCCCCcccccCCCC-CHHHHhhccceeecccC---------CCCCCccccccccccccCCceeecCCCCCcccHhhHH
Q 048328 25 GPVLDHPIWYINTIGL-PQSVIDSIAVFKYKKDV---------GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCID 94 (318)
Q Consensus 25 ~~~~~~p~~~i~~~GL-~~~~I~~Lp~~~~~~~~---------~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~ 94 (318)
...++.++|++...|+ ++++. ||..+.+... .-..+.+|+|||+.|...+.++.+| |.|.||..|++
T Consensus 278 rf~~~l~~~~~f~~gfyS~~e~--ip~~t~~g~lkpls~e~~~ea~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~ 354 (374)
T COG5540 278 RFNIILEIQINFDVGFYSSSEA--IPTTTTKGSLKPLSIERAVEADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVD 354 (374)
T ss_pred eeEEEeehheehhhheeecccc--ccccccCcceeechhHhHHhcCCCceEEEEhhhhcccceEEEec-cCceechhHHH
Confidence 3345788899888776 22222 3433332111 1134578999999999989999999 99999999999
Q ss_pred HHHhc-CCCCCCcccCCCC
Q 048328 95 TWLRS-HTNCPLCRAPILS 112 (318)
Q Consensus 95 ~Wl~~-~~tCP~CR~~i~~ 112 (318)
+|+.. +..||+||+++++
T Consensus 355 kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 355 KWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred HHHhhhcccCCccCCCCCC
Confidence 99985 5679999998865
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.4e-10 Score=109.88 Aligned_cols=69 Identities=26% Similarity=0.755 Sum_probs=50.7
Q ss_pred HHHHhhccceeecccCCCCCCccccccccc-cccC---------CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 42 QSVIDSIAVFKYKKDVGLIEGTDCSVCLSE-FQED---------ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 42 ~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~-f~~~---------~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
+.+-+.+|.++.... -..+..|.||+++ |..+ ...+.+| |||.||.+|++.|++++.+||+||.++.
T Consensus 269 kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 269 KDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 334444454443332 1456789999999 5544 2446788 9999999999999999999999999965
Q ss_pred CC
Q 048328 112 SG 113 (318)
Q Consensus 112 ~~ 113 (318)
..
T Consensus 346 fd 347 (491)
T COG5243 346 FD 347 (491)
T ss_pred cc
Confidence 44
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.88 E-value=2.1e-09 Score=96.94 Aligned_cols=57 Identities=25% Similarity=0.697 Sum_probs=45.3
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc----------------CCCCCCcccCCCCCCccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----------------HTNCPLCRAPILSGAFVAQAS 120 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----------------~~tCP~CR~~i~~~~~~~~~~ 120 (318)
.++.+|+||++.+..+ ++++ |||.||..||..|+.. ...||+||..+......+...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 4568999999998766 5566 9999999999999852 247999999997766555443
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.84 E-value=1.7e-09 Score=76.90 Aligned_cols=47 Identities=36% Similarity=0.984 Sum_probs=39.0
Q ss_pred CCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
|+..|.||++.+.. +..+| |||. ||..|+..|+.....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35789999998643 57788 9999 999999999999999999999874
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.5e-09 Score=98.30 Aligned_cols=58 Identities=26% Similarity=0.634 Sum_probs=46.8
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc---CCCCCCcccCCCCCCccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRAPILSGAFVAQASE 121 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~~i~~~~~~~~~~~ 121 (318)
....+|.|||+.-+++ +++. |||.||..||.+||.. .+.||+|++.+......+....
T Consensus 45 ~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 3457899999998776 5555 9999999999999976 3569999999988776665543
No 10
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=3.5e-09 Score=83.84 Aligned_cols=52 Identities=33% Similarity=0.826 Sum_probs=39.9
Q ss_pred CCccccccccccccC---------CceeecCCCCCcccHhhHHHHHhc---CCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQED---------ESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~~---------~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~~i~~ 112 (318)
+++.|.||...|... +...++..|+|.||..||.+|+.+ +..||+||+++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 478999999998731 112223359999999999999975 4689999998754
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.79 E-value=3.5e-09 Score=71.62 Aligned_cols=39 Identities=36% Similarity=1.129 Sum_probs=32.5
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCc
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLC 106 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~C 106 (318)
|+||++.+..+ ++.++ |||.||..||..|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998763 45676 99999999999999998899998
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.79 E-value=5.6e-09 Score=70.23 Aligned_cols=44 Identities=59% Similarity=1.398 Sum_probs=36.1
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCC
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPI 110 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i 110 (318)
+|+||++.+. ......+ |+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 3344555 9999999999999987 77899998753
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.9e-09 Score=99.69 Aligned_cols=49 Identities=35% Similarity=0.825 Sum_probs=42.8
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
...|.+||+....+ ..+| |||+||..||..|......||+||..+.+..
T Consensus 239 ~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 36799999998776 5567 9999999999999999999999999887654
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1e-08 Score=90.97 Aligned_cols=53 Identities=32% Similarity=0.743 Sum_probs=43.3
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
....|+|||+.+..... .-.+|||+||..||+..+.....||+|++.|..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 34689999999876532 223699999999999999999999999998876654
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.72 E-value=5.3e-09 Score=95.92 Aligned_cols=53 Identities=34% Similarity=0.889 Sum_probs=39.6
Q ss_pred CCCccccccccccccC-----CceeecCCCCCcccHhhHHHHHhcC------CCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQED-----ESLRLLPKCNHAFHISCIDTWLRSH------TNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~-----~~~~~lP~CgH~FH~~CI~~Wl~~~------~tCP~CR~~i~~ 112 (318)
.++.+|+||++..-.+ ....+++.|+|.||..||..|...+ .+||+||..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4578999999976332 1223455699999999999999753 459999997653
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.71 E-value=8.2e-09 Score=71.41 Aligned_cols=38 Identities=37% Similarity=1.003 Sum_probs=29.2
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCc
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLC 106 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~C 106 (318)
|+||++.|..| +.++ |||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999888 5566 99999999999999763 369988
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=2.3e-08 Score=73.46 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=41.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
..|+||++.+..+ +.++ |||.|+..||..|+..+.+||+|+..+....
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 5799999999887 5566 9999999999999998889999998875443
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=2.8e-08 Score=98.72 Aligned_cols=52 Identities=33% Similarity=0.655 Sum_probs=44.4
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.+.....|+||++.|..+ ++++ |+|.||..||..|+.....||+|+..+...
T Consensus 22 ~Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 345678999999999877 4566 999999999999999888899999987654
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-08 Score=104.73 Aligned_cols=51 Identities=33% Similarity=0.922 Sum_probs=43.6
Q ss_pred CCccccccccccccCCc--eeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQEDES--LRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~--~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.+..|+||++.+..+.. ...+| |+|.||..|+..|+++..+||+||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 36789999999987543 56787 99999999999999999999999995443
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.58 E-value=3.4e-08 Score=66.96 Aligned_cols=39 Identities=44% Similarity=1.223 Sum_probs=33.3
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHh--cCCCCCCc
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR--SHTNCPLC 106 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~--~~~tCP~C 106 (318)
|+||++.+..+. ..++ |||.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987663 4676 999999999999998 45679998
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.53 E-value=7e-08 Score=67.02 Aligned_cols=44 Identities=30% Similarity=0.892 Sum_probs=37.4
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
.|.||++.|......++++ |||.||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999995555677787 9999999999999856778999984
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=1.3e-07 Score=61.28 Aligned_cols=38 Identities=45% Similarity=1.255 Sum_probs=31.8
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHh-cCCCCCCc
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-SHTNCPLC 106 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-~~~tCP~C 106 (318)
|+||++.. .....++ |+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999984 3446677 999999999999998 56779987
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.5e-08 Score=96.68 Aligned_cols=56 Identities=25% Similarity=0.536 Sum_probs=44.4
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCcccCCCCCCccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRAPILSGAFVAQASE 121 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-----~~tCP~CR~~i~~~~~~~~~~~ 121 (318)
+..|||||+....+ ..+. |||+||..||.++|.. ...||+||..|..+++.+...+
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 68999999987655 3444 9999999999988854 3579999999988776655443
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.44 E-value=9.7e-08 Score=74.50 Aligned_cols=51 Identities=33% Similarity=0.684 Sum_probs=37.8
Q ss_pred cccccccccccc-----------C-CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 63 TDCSVCLSEFQE-----------D-ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 63 ~~C~ICle~f~~-----------~-~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
+.|+||...|-. + +.....-.|+|.||..||..||.++..||++|+++...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 567777766532 2 12222235999999999999999999999999987543
No 25
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.35 E-value=1.1e-07 Score=101.17 Aligned_cols=73 Identities=29% Similarity=0.659 Sum_probs=56.9
Q ss_pred CCCHHHHhhccceeecccCCCCCCcccccccccccc-C--CceeecCCCCCcccHhhHHHHHhc--CCCCCCcccCCC
Q 048328 39 GLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQE-D--ESLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRAPIL 111 (318)
Q Consensus 39 GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~-~--~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~~i~ 111 (318)
|.+.++.+.|-.++......+..-.+|+||+..+.. + -.-..++.|.|.||..|+.+|+++ +.+||+||..++
T Consensus 1446 ~~ngs~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1446 KKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hccchHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456678888888888777777778899999998762 1 112345579999999999999986 568999998765
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.30 E-value=1.5e-07 Score=90.77 Aligned_cols=51 Identities=25% Similarity=0.711 Sum_probs=44.8
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.-..|.||+++|..+ .++| |+|.||..||..+|..+..||.|+.++....+
T Consensus 22 ~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 346899999999887 6778 99999999999999999999999998776543
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.2e-07 Score=84.08 Aligned_cols=50 Identities=34% Similarity=0.826 Sum_probs=41.1
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHH-HHhcCCC-CCCcccCCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT-WLRSHTN-CPLCRAPILSGA 114 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~-Wl~~~~t-CP~CR~~i~~~~ 114 (318)
.+..|+||++....+ ..+| |||+||..||.. |-..+.. ||+||+.+.+..
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 367899999997665 5566 999999999999 8766655 999999887654
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4e-07 Score=70.56 Aligned_cols=53 Identities=30% Similarity=0.716 Sum_probs=38.6
Q ss_pred CCCccccccccccccC---------CceeecCCCCCcccHhhHHHHHhc---CCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQED---------ESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~---------~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~~i~~ 112 (318)
..++.|-||.-.|... +...++-.|.|.||..||.+|+.. +..||+||..+..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3456899999888641 111222259999999999999965 4569999998753
No 29
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.8e-07 Score=72.60 Aligned_cols=53 Identities=32% Similarity=0.748 Sum_probs=39.9
Q ss_pred CCCcccccccccccc-------------CCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQE-------------DESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~-------------~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
+.-+.|+||..-+-+ .+..+....|+|.||..||.+||+++..||+|.+.+..
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 355789999875421 12233333599999999999999999999999887653
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8.7e-07 Score=79.89 Aligned_cols=45 Identities=40% Similarity=0.926 Sum_probs=39.6
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
+.+...|+||++.|..+ .++| |+|.||..||..|+.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 35678999999999988 6777 999999999999988556799999
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.12 E-value=1e-06 Score=83.71 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=42.0
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
-..|-||-+.|..+ ..++ |||.||..||...|..+..||+||.+....
T Consensus 25 ~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 46799999999877 5566 999999999999999999999999876544
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.11 E-value=1.4e-06 Score=66.86 Aligned_cols=51 Identities=22% Similarity=0.510 Sum_probs=39.2
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAF 115 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~ 115 (318)
+...|+||.+.|.+| +++| |||.|...||..|+.. ..+||+|+.++....+
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 357899999999887 5667 9999999999999998 8899999988876544
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.6e-06 Score=87.25 Aligned_cols=51 Identities=31% Similarity=0.916 Sum_probs=39.3
Q ss_pred CCccccccccccccCC--------------ceeecCCCCCcccHhhHHHHHhcCC-CCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQEDE--------------SLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~~~--------------~~~~lP~CgH~FH~~CI~~Wl~~~~-tCP~CR~~i~~ 112 (318)
...+|+||+..+..-. .-.++| |.|+||..|+.+|....+ .||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3457999998765311 133567 999999999999998644 89999998864
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=3.3e-06 Score=81.38 Aligned_cols=56 Identities=25% Similarity=0.564 Sum_probs=40.8
Q ss_pred Cccccccccc--cccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCccCC
Q 048328 62 GTDCSVCLSE--FQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFVAQ 118 (318)
Q Consensus 62 ~~~C~ICle~--f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~~~ 118 (318)
+..||||+.. +.+...+.+.+ |||.||..|+...+.. ...||.|+..+....+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 4689999994 33333334445 9999999999996644 5689999998877665433
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.1e-06 Score=82.78 Aligned_cols=56 Identities=27% Similarity=0.653 Sum_probs=44.9
Q ss_pred CCCccccccccccccCC-------ceeecCCCCCcccHhhHHHHHh--cCCCCCCcccCCCCCCcc
Q 048328 60 IEGTDCSVCLSEFQEDE-------SLRLLPKCNHAFHISCIDTWLR--SHTNCPLCRAPILSGAFV 116 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~-------~~~~lP~CgH~FH~~CI~~Wl~--~~~tCP~CR~~i~~~~~~ 116 (318)
.++..|+||-..+...+ ++..+. |+|+||..||+-|.. +..+||.|+..+......
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 46788999998887654 566776 999999999999974 477999999887655443
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.00 E-value=1.3e-06 Score=66.91 Aligned_cols=50 Identities=32% Similarity=0.858 Sum_probs=23.6
Q ss_pred Cccccccccccc-cCC-ceeecC--CCCCcccHhhHHHHHhc----C-------CCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQ-EDE-SLRLLP--KCNHAFHISCIDTWLRS----H-------TNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~-~~~-~~~~lP--~CgH~FH~~CI~~Wl~~----~-------~tCP~CR~~i~ 111 (318)
+.+|.||+..+. .+. .....+ .|++.||..||.+||.. + .+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999865 222 223332 69999999999999964 1 24999998874
No 37
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.99 E-value=5.1e-06 Score=57.90 Aligned_cols=38 Identities=32% Similarity=0.900 Sum_probs=22.1
Q ss_pred ccccccccccCC-ceeecCCCCCcccHhhHHHHHhcC----CCCC
Q 048328 65 CSVCLSEFQEDE-SLRLLPKCNHAFHISCIDTWLRSH----TNCP 104 (318)
Q Consensus 65 C~ICle~f~~~~-~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP 104 (318)
|+||++ |..++ ..++|+ |||.||..||.+|+... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75533 347788 99999999999999753 3476
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.97 E-value=3.2e-06 Score=84.30 Aligned_cols=53 Identities=36% Similarity=0.812 Sum_probs=41.9
Q ss_pred cCCCCCCccccccccccccCCce-eecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 56 DVGLIEGTDCSVCLSEFQEDESL-RLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 56 ~~~l~e~~~C~ICle~f~~~~~~-~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
..+++|..+|+|||+.+...... +... |.|.||..|+..|. ..+||+||.-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 34568889999999999776533 3344 99999999999994 468999997554
No 39
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.92 E-value=8.7e-06 Score=58.14 Aligned_cols=42 Identities=21% Similarity=0.812 Sum_probs=32.5
Q ss_pred cccccccccccCCceeecCCCC-----CcccHhhHHHHHhc--CCCCCCcc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCN-----HAFHISCIDTWLRS--HTNCPLCR 107 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~Cg-----H~FH~~CI~~Wl~~--~~tCP~CR 107 (318)
.|-||++ +..+......| |. |.||..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 33444555778 75 89999999999965 45899995
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.2e-06 Score=83.28 Aligned_cols=56 Identities=30% Similarity=0.593 Sum_probs=45.0
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCccC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~~ 117 (318)
+..+..|+|||+.+... +.++.|.|.||..||..-++. .+.||.||+.+..+..+.
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence 35578999999998655 455579999999999888765 778999999887765443
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1e-05 Score=79.61 Aligned_cols=54 Identities=24% Similarity=0.802 Sum_probs=39.3
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhc---CCCCCCcccCCCCCCc
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRAPILSGAF 115 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~~i~~~~~ 115 (318)
...|.||.+.+.....+.-...|||+||..|+.+|+.. ..+||+|+-.+....+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 36899997666555444444359999999999999976 3589999954444433
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.4e-05 Score=74.78 Aligned_cols=54 Identities=26% Similarity=0.493 Sum_probs=42.8
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCccCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFVAQA 119 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~~~~ 119 (318)
..+|+||+...--+ ..++ |+|.||+.||+--... ..+|++||.+|....+..+.
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ps 61 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPS 61 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcchh
Confidence 57999999987655 4565 9999999999876554 66799999999877655443
No 43
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.7e-05 Score=71.87 Aligned_cols=87 Identities=24% Similarity=0.547 Sum_probs=73.8
Q ss_pred eecccccccccCCCCCCCCCcccccCCCCCHHHHhhccceeecccCCCCCCccccccccccccCCceeecCCCCCcccHh
Q 048328 12 IFATQEDFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHIS 91 (318)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~p~~~i~~~GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~ 91 (318)
+|+.+.+....+++-+..||..++ |+.+.+|....| +..|..|-..+..++.+++. |-|.||..
T Consensus 14 lFCfEHRVNVCEhClV~nHpkCiV------QSYLqWL~DsDY--------~pNC~LC~t~La~gdt~RLv--CyhlfHW~ 77 (299)
T KOG3970|consen 14 LFCFEHRVNVCEHCLVANHPKCIV------QSYLQWLQDSDY--------NPNCRLCNTPLASGDTTRLV--CYHLFHWK 77 (299)
T ss_pred hhhhhhhhhHHHHHHhccCchhhH------HHHHHHHhhcCC--------CCCCceeCCccccCcceeeh--hhhhHHHH
Confidence 678888888999999999999988 889999877655 35899999999999888765 99999999
Q ss_pred hHHHHHhc--------CCCCCCcccCCCCCC
Q 048328 92 CIDTWLRS--------HTNCPLCRAPILSGA 114 (318)
Q Consensus 92 CI~~Wl~~--------~~tCP~CR~~i~~~~ 114 (318)
|+..|... ...||.|..+|.+..
T Consensus 78 ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 78 CLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred HhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 99999864 235999999887653
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.54 E-value=3.2e-05 Score=81.53 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=42.2
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|++|+..|.+.......+ |+|+||..||..|-+...+||+||..|...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 357999999987765444444 999999999999999999999999877543
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.53 E-value=2.3e-05 Score=59.05 Aligned_cols=48 Identities=31% Similarity=0.741 Sum_probs=24.2
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
...|++|.+.+..+.. +..|.|+||..||..-+. ..||+|+.+.-..+
T Consensus 7 lLrCs~C~~~l~~pv~---l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEPVC---LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCCce---eccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 4689999999987732 235999999999977544 34999998754433
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=6.4e-05 Score=79.22 Aligned_cols=50 Identities=28% Similarity=0.677 Sum_probs=39.2
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHh-cCCCCCCcccCCCCCCc
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRAPILSGAF 115 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-~~~tCP~CR~~i~~~~~ 115 (318)
-..|++|-..+.+. ++. +|+|.||..|+.+.+. ++..||.|-+.|-..++
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhhH---HHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 46899999776543 333 5999999999999885 47889999998865544
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=9.1e-05 Score=72.65 Aligned_cols=53 Identities=32% Similarity=0.952 Sum_probs=39.8
Q ss_pred CCCccccccccccccCC----ceeecCCCCCcccHhhHHHHHh--c-----CCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDE----SLRLLPKCNHAFHISCIDTWLR--S-----HTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~----~~~~lP~CgH~FH~~CI~~Wl~--~-----~~tCP~CR~~i~~ 112 (318)
..+..|.||++...... ...++|.|.|.||..||..|-. + .+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34679999999865543 1234567999999999999983 3 4679999986543
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00012 Score=71.38 Aligned_cols=47 Identities=38% Similarity=0.923 Sum_probs=39.5
Q ss_pred CccccccccccccCCceeecCCCCC-cccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNH-AFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH-~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
..+|.||+.+.. .+.++| |.| ..|..|-+...-.++.||+||.+|..
T Consensus 290 gkeCVIClse~r---dt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR---DTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc---ceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 578999999864 457899 999 68999998877678899999998854
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.29 E-value=0.00017 Score=71.45 Aligned_cols=50 Identities=32% Similarity=0.834 Sum_probs=40.2
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhc--CCCCCCcccCCCCCCccC
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~~i~~~~~~~ 117 (318)
-|.||-+. ...+++-| |||..|..|+..|-.. ..+||.||..|.......
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 49999875 34567788 9999999999999754 578999999987765443
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00011 Score=53.66 Aligned_cols=46 Identities=30% Similarity=0.754 Sum_probs=34.2
Q ss_pred CccccccccccccCCceeecCCCCC-cccHhhHHHHHh-cCCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNH-AFHISCIDTWLR-SHTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH-~FH~~CI~~Wl~-~~~tCP~CR~~i~ 111 (318)
+.+|.||++.-.+. ++.. ||| -.|..|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 37999999974332 3343 999 478999665554 6889999999874
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.06 E-value=0.00031 Score=70.08 Aligned_cols=55 Identities=27% Similarity=0.651 Sum_probs=45.2
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCcc
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFV 116 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~ 116 (318)
+.++..|+||...+.++... . .|||.||..|+..|+..+..||.|+..+......
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 46778999999999887442 3 4999999999999999999999998877654433
No 52
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.04 E-value=0.00026 Score=72.24 Aligned_cols=72 Identities=19% Similarity=0.451 Sum_probs=49.5
Q ss_pred CCCCCCCcccccCCCCCHHHHhhccceeecccCCCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-----
Q 048328 25 GPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----- 99 (318)
Q Consensus 25 ~~~~~~p~~~i~~~GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----- 99 (318)
.+.+|||.++.-. ..+.++. .-+++.+|.+|.+.-++. +.. .|.|.||..||..++..
T Consensus 512 RQ~aDHP~LVl~S------~~~n~~~-------enk~~~~C~lc~d~aed~---i~s-~ChH~FCrlCi~eyv~~f~~~~ 574 (791)
T KOG1002|consen 512 RQAADHPDLVLYS------ANANLPD-------ENKGEVECGLCHDPAEDY---IES-SCHHKFCRLCIKEYVESFMENN 574 (791)
T ss_pred HHhccCcceeeeh------hhcCCCc-------cccCceeecccCChhhhh---Hhh-hhhHHHHHHHHHHHHHhhhccc
Confidence 3557899887743 1122221 124567899999986654 344 49999999999998854
Q ss_pred CCCCCCcccCCCCC
Q 048328 100 HTNCPLCRAPILSG 113 (318)
Q Consensus 100 ~~tCP~CR~~i~~~ 113 (318)
.-+||.|...+.-.
T Consensus 575 nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 575 NVTCPVCHIGLSID 588 (791)
T ss_pred CCCCcccccccccc
Confidence 46899998776443
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00037 Score=69.70 Aligned_cols=51 Identities=31% Similarity=0.781 Sum_probs=43.0
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
+..+..|.||+..+..+ +.+| |||.||..||.+-+.....||.||..+...
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred ccchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 35678899999999877 5567 999999999999777778899999988753
No 54
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00039 Score=69.00 Aligned_cols=50 Identities=32% Similarity=0.857 Sum_probs=38.1
Q ss_pred CccccccccccccCCc-eeecCCCCCcccHhhHHHHHhc--CCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQEDES-LRLLPKCNHAFHISCIDTWLRS--HTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~-~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~~i~ 111 (318)
..+|+||++.+..+.. ....+.|||.|-..||+.||.+ ...||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 5789999998876543 2334469999999999999953 346999986543
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.83 E-value=0.00038 Score=66.76 Aligned_cols=52 Identities=27% Similarity=0.770 Sum_probs=42.6
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-----------------------CCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-----------------------HTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-----------------------~~tCP~CR~~i~~~ 113 (318)
....|.|||--|........++ |.|+||..|+..+|.. ...||+||..|...
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4578999999999988888887 9999999999877631 13599999988654
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.64 E-value=0.0011 Score=65.80 Aligned_cols=46 Identities=35% Similarity=0.873 Sum_probs=37.9
Q ss_pred Ccccccccccccc-CCceeecCCCCCcccHhhHHHHHhcC--CCCCCccc
Q 048328 62 GTDCSVCLSEFQE-DESLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~-~~~~~~lP~CgH~FH~~CI~~Wl~~~--~tCP~CR~ 108 (318)
+..|..|-+.+.. ++.+.-+| |.|+||..|+...|..+ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4679999987754 45667788 99999999999999764 57999984
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.62 E-value=0.00097 Score=49.13 Aligned_cols=43 Identities=23% Similarity=0.640 Sum_probs=28.0
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc--CCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS--HTNCPL 105 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~ 105 (318)
.-...|+|.+..|.+| ++.. .|+|.|-...|..|+.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999877 3333 59999999999999944 456998
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0024 Score=62.58 Aligned_cols=53 Identities=21% Similarity=0.501 Sum_probs=44.5
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
.-.|+..|+||+.. +...+..| |+|.=|..||.+.+...+.|=.|++.+....
T Consensus 418 p~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred CCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 33678899999876 45557788 9999999999999999999999999876543
No 59
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0023 Score=60.74 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=37.9
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc--CCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~~i~ 111 (318)
..+.+|++|-+.-..| ....+ |+|+||+-||..-+.. ..+||.|-....
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4678999999986666 33344 9999999999886653 478999977654
No 60
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.42 E-value=0.00085 Score=65.01 Aligned_cols=51 Identities=25% Similarity=0.580 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
....+|.+|-.+|.+...+. .|-|.||..||...|....+||+|...+-..
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 44579999999998764432 5999999999999999999999998876544
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.18 E-value=0.0024 Score=58.28 Aligned_cols=44 Identities=18% Similarity=0.545 Sum_probs=37.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
..|.||..+|..+ +++. |||.||..|...-++....|-+|.+..
T Consensus 197 F~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 4799999999887 3444 999999999999888889999997654
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.55 E-value=0.0086 Score=67.29 Aligned_cols=68 Identities=22% Similarity=0.517 Sum_probs=48.4
Q ss_pred HHhhccceeecccCC-CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----------CCCCCcccCCCC
Q 048328 44 VIDSIAVFKYKKDVG-LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----------TNCPLCRAPILS 112 (318)
Q Consensus 44 ~I~~Lp~~~~~~~~~-l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----------~tCP~CR~~i~~ 112 (318)
.-.-||-+..++... ...++.|-||+.+--.....+.+. |+|+||..|...-|.+. -.||+|+.+|..
T Consensus 3467 EE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3467 EEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345567776655433 245678999998765555667775 99999999998666542 359999988754
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.48 E-value=0.0053 Score=49.11 Aligned_cols=33 Identities=39% Similarity=0.851 Sum_probs=27.6
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCID 94 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~ 94 (318)
.++..|++|...+.. ......| |||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 467789999999977 4566778 99999999974
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.41 E-value=0.012 Score=41.97 Aligned_cols=45 Identities=27% Similarity=0.628 Sum_probs=22.5
Q ss_pred ccccccccccC-CceeecCCCCCcccHhhHHHHHh-cCCCCCCcccCC
Q 048328 65 CSVCLSEFQED-ESLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRAPI 110 (318)
Q Consensus 65 C~ICle~f~~~-~~~~~lP~CgH~FH~~CI~~Wl~-~~~tCP~CR~~i 110 (318)
|++|.+++... ....-.+ |++.+|..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999998433 3344444 999999999888775 367899999864
No 65
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0055 Score=54.31 Aligned_cols=41 Identities=24% Similarity=0.630 Sum_probs=33.5
Q ss_pred cceeecccCCCCCCccccccccccccCCceeecCCCCCcccH
Q 048328 49 AVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHI 90 (318)
Q Consensus 49 p~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~ 90 (318)
|.+.|+.+.-..+..+|.|||+++..++.+..|| |-.+||.
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 5566665544456679999999999999999999 9999985
No 66
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0053 Score=58.90 Aligned_cols=45 Identities=22% Similarity=0.464 Sum_probs=38.2
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
..|-||...|..+ +++ .|+|.||..|...-++....|++|.+.+.
T Consensus 242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence 4699999999888 344 49999999999988888899999987654
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.0099 Score=59.33 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=38.7
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc--------CCCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS--------HTNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~--------~~tCP~CR~~ 109 (318)
....|.||+++..-......+| |+|+||..|+..++.. .-.||-|...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3467999999987768888998 9999999999999854 2358877654
No 68
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.21 E-value=0.0097 Score=63.88 Aligned_cols=50 Identities=28% Similarity=0.783 Sum_probs=39.1
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC-------CCCCCcccCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH-------TNCPLCRAPI 110 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~-------~tCP~CR~~i 110 (318)
...+|.||++.+.....+.....|-|+||..||..|.+.. -.||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4578999999988766665555688999999999998652 2499998543
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.017 Score=54.39 Aligned_cols=55 Identities=15% Similarity=0.333 Sum_probs=46.7
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCcc
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFV 116 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~ 116 (318)
...|+||.+.+.+...+..|..|||+|+..|..+.+..-..||+|-.++...++.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 3579999999998876666666999999999999988889999998888766554
No 70
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.14 E-value=0.011 Score=50.76 Aligned_cols=43 Identities=16% Similarity=0.588 Sum_probs=32.1
Q ss_pred CccccccccccccCCceeecCCCC------CcccHhhHHHHHhcCCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCN------HAFHISCIDTWLRSHTNCPL 105 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~Cg------H~FH~~CI~~Wl~~~~tCP~ 105 (318)
..+|.||++.+.....++.++ |+ |.||..|+.+|-+..+.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 468999999998845566666 76 89999999999544433333
No 71
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.00 E-value=0.015 Score=56.03 Aligned_cols=43 Identities=33% Similarity=0.683 Sum_probs=35.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHh-cCCCCCCccc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRA 108 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-~~~tCP~CR~ 108 (318)
..|+.|...+..+ ..+|.|+|.||..||...|. ....||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6799999988777 33466999999999997765 4678999965
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.79 E-value=0.034 Score=52.45 Aligned_cols=57 Identities=19% Similarity=0.425 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~~ 117 (318)
.....|||...+|......+.+..|||+|...+|...- ....||+|-.++...+...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 34567999999996555554444499999999999862 3567999999988766544
No 73
>PHA03096 p28-like protein; Provisional
Probab=94.71 E-value=0.017 Score=55.57 Aligned_cols=46 Identities=26% Similarity=0.654 Sum_probs=31.9
Q ss_pred ccccccccccccC----CceeecCCCCCcccHhhHHHHHhc---CCCCCCccc
Q 048328 63 TDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRA 108 (318)
Q Consensus 63 ~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~ 108 (318)
..|.||++..... .....++.|.|.||..||..|... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999976532 122356789999999999999854 234444443
No 74
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.021 Score=51.44 Aligned_cols=31 Identities=39% Similarity=1.032 Sum_probs=25.2
Q ss_pred CCCCcccHhhHHHHHhcC-----------CCCCCcccCCCCC
Q 048328 83 KCNHAFHISCIDTWLRSH-----------TNCPLCRAPILSG 113 (318)
Q Consensus 83 ~CgH~FH~~CI~~Wl~~~-----------~tCP~CR~~i~~~ 113 (318)
.||.-||.-|+..||+.- ..||+|..++.-+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 499999999999999641 3599998887544
No 75
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.54 E-value=0.023 Score=50.08 Aligned_cols=58 Identities=24% Similarity=0.586 Sum_probs=36.6
Q ss_pred CCccccccccccccCCceeecC---C-----CCC-cccHhhHHHHHhc-------------------------------C
Q 048328 61 EGTDCSVCLSEFQEDESLRLLP---K-----CNH-AFHISCIDTWLRS-------------------------------H 100 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP---~-----CgH-~FH~~CI~~Wl~~-------------------------------~ 100 (318)
|+..|+|||+.-.+...+.-.. + |+- .-|..||+++-+. .
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 4689999999865542221100 1 332 3467899987642 1
Q ss_pred CCCCCcccCCCCCCccCC
Q 048328 101 TNCPLCRAPILSGAFVAQ 118 (318)
Q Consensus 101 ~tCP~CR~~i~~~~~~~~ 118 (318)
..||+||..|..+.....
T Consensus 81 L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVVEP 98 (162)
T ss_pred ccCccccCceeceEEchH
Confidence 249999999988765543
No 76
>PHA02862 5L protein; Provisional
Probab=94.40 E-value=0.031 Score=48.65 Aligned_cols=48 Identities=23% Similarity=0.582 Sum_probs=35.6
Q ss_pred CccccccccccccCCceeecCCCC-----CcccHhhHHHHHhc--CCCCCCcccCCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCN-----HAFHISCIDTWLRS--HTNCPLCRAPILSGA 114 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~Cg-----H~FH~~CI~~Wl~~--~~tCP~CR~~i~~~~ 114 (318)
+..|=||++.-.+. ..| |. ...|..|+.+|+.. ...|++|+.++.-+.
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 36899999985433 245 54 57999999999965 457999999875443
No 77
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.36 E-value=0.026 Score=41.42 Aligned_cols=45 Identities=24% Similarity=0.517 Sum_probs=32.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
..|..|...-. .-.++| |+|..|..|..-+ +-+.||.|.+++...
T Consensus 8 ~~~~~~~~~~~---~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccc---cccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 45666655432 336777 9999999997654 556799999988654
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.30 E-value=0.016 Score=54.04 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=34.0
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
.|..|...-. ++...++. |.|+||..|...- ....||+|+..+....
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeeeee
Confidence 5777776544 66777776 9999999997552 2238999999865443
No 79
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.02 E-value=0.046 Score=38.60 Aligned_cols=41 Identities=37% Similarity=1.023 Sum_probs=26.3
Q ss_pred ccccccccccCCceeecC-CCCC---cccHhhHHHHHhc--CCCCCCc
Q 048328 65 CSVCLSEFQEDESLRLLP-KCNH---AFHISCIDTWLRS--HTNCPLC 106 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP-~CgH---~FH~~CI~~Wl~~--~~tCP~C 106 (318)
|-||++.-.... ..+.| .|.= ..|..|+..|+.. ..+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998866554 34455 3443 7899999999974 5679887
No 80
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.77 E-value=0.062 Score=47.51 Aligned_cols=50 Identities=20% Similarity=0.673 Sum_probs=36.2
Q ss_pred CCCccccccccccccCCceeecC-CCCC---cccHhhHHHHHhc--CCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLP-KCNH---AFHISCIDTWLRS--HTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP-~CgH---~FH~~CI~~Wl~~--~~tCP~CR~~i~~~ 113 (318)
..+..|=||++.-.. . ..| .|.. ..|..|+..|+.. ...|++|++++...
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456799999988432 1 235 3544 6799999999965 45799999887544
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.012 Score=56.50 Aligned_cols=42 Identities=26% Similarity=0.686 Sum_probs=31.5
Q ss_pred CccccccccccccCCceeecCCCCC-cccHhhHHHHHhcCCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNH-AFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH-~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
..-|+||++.. ...+.|+ ||| +-|..|-+. ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP---~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 45699999974 4567887 999 457777644 348999998764
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.37 E-value=0.045 Score=38.03 Aligned_cols=41 Identities=24% Similarity=0.710 Sum_probs=23.0
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHhcCC--CCCCc
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT--NCPLC 106 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~--tCP~C 106 (318)
|.+|.+....+...... .|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67788877666332211 4888999999999998755 79988
No 83
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.02 E-value=0.12 Score=51.30 Aligned_cols=30 Identities=30% Similarity=0.840 Sum_probs=23.2
Q ss_pred CCCcccHhhHHHHHhcC-------------CCCCCcccCCCCC
Q 048328 84 CNHAFHISCIDTWLRSH-------------TNCPLCRAPILSG 113 (318)
Q Consensus 84 CgH~FH~~CI~~Wl~~~-------------~tCP~CR~~i~~~ 113 (318)
|...+|..|+.+|+..+ -.||+||+.+.-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 55677899999999542 3599999988643
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.074 Score=51.91 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=37.5
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
+...|+||+....++..+ . .-|-+||..||-+++..+..||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl--~-vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVL--E-VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceE--E-ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 456899999998777333 2 2699999999999999999999865543
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.98 E-value=0.043 Score=53.83 Aligned_cols=58 Identities=17% Similarity=0.396 Sum_probs=42.5
Q ss_pred CCCccccccccccccCC-ceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCccCC
Q 048328 60 IEGTDCSVCLSEFQEDE-SLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFVAQ 118 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~-~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~~~ 118 (318)
.+++.|+.|++.+...+ ...-+| ||-.+|.-|...--+. +..||.||......+....
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 45667999999987654 445566 9999999886654333 5679999998877665443
No 86
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.05 Score=53.56 Aligned_cols=43 Identities=33% Similarity=0.715 Sum_probs=30.9
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
...|.||++.... +..+| |||.-| |..-- +....||+||..|.
T Consensus 305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 4579999998754 57788 999866 65432 22345999998764
No 87
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.81 E-value=0.095 Score=51.62 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=37.4
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHH--HHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT--WLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~--Wl~~~~tCP~CR~~i~~ 112 (318)
.++..|.||...+.- ..++| |+|..|-.|-.. .|...+.||+||+.+..
T Consensus 59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 455679999987643 36788 999999999754 34568899999987643
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=0.058 Score=58.19 Aligned_cols=42 Identities=24% Similarity=0.701 Sum_probs=33.2
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
....|..|--.+..|... - .|||.||.+|+. .....||.|+.
T Consensus 839 q~skCs~C~~~LdlP~Vh--F-~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVH--F-LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceee--e-ecccHHHHHhhc---cCcccCCccch
Confidence 346899999988877433 3 399999999998 35567999987
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.63 E-value=0.047 Score=58.27 Aligned_cols=50 Identities=24% Similarity=0.699 Sum_probs=39.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhc--CCCCCCcccCCCCCCccC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~~i~~~~~~~ 117 (318)
..|.||++ .+.....+ |+|.||..|+..-+.. ...||.||..+.......
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 79999999 24456666 9999999999887754 235999999887766554
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.087 Score=51.17 Aligned_cols=42 Identities=31% Similarity=0.720 Sum_probs=28.3
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
.|--|-- -....-+..| |+|+||..|... ..-+.||.|-..+
T Consensus 92 fCd~Cd~--PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDF--PIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCC--cceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 3555533 3334457788 999999999754 3356899996544
No 91
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.19 Score=47.70 Aligned_cols=47 Identities=28% Similarity=0.815 Sum_probs=36.6
Q ss_pred ccccccccccccCC---ceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCC
Q 048328 63 TDCSVCLSEFQEDE---SLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPI 110 (318)
Q Consensus 63 ~~C~ICle~f~~~~---~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i 110 (318)
..|-||-++|...+ ..+.+ +|||.||..|+.+.+.. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999997652 23445 49999999999887655 45699999985
No 92
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.75 E-value=0.2 Score=48.02 Aligned_cols=46 Identities=22% Similarity=0.609 Sum_probs=36.7
Q ss_pred CccccccccccccCC-ceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 62 GTDCSVCLSEFQEDE-SLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~~~-~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
...|+||.+.+.... .+..++ |||..|..|+.......-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 355999999765543 334565 9999999999998877789999988
No 93
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.70 E-value=0.24 Score=48.01 Aligned_cols=46 Identities=28% Similarity=0.580 Sum_probs=35.0
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.+-.+||||.+.+..+ +...+ =||..|..|-.+ ....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc--ceecC-CCcEehhhhhhh---hcccCCccccccc
Confidence 4557999999999887 33222 379999999753 4677999999876
No 94
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.28 E-value=0.41 Score=35.08 Aligned_cols=35 Identities=29% Similarity=0.870 Sum_probs=30.4
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT 95 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~ 95 (318)
....|++|-+.|.+.+.+++.|.|+-.+|+.|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35689999999988888889999999999999644
No 95
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.11 E-value=0.31 Score=41.97 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=36.9
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhc---CCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~~i~~~ 113 (318)
-.+|-||.+...+..-+.----||-..|..|-...|+. +..||+|++.+...
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 36899999986543211111149999999998776654 67899999988654
No 96
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=0.038 Score=54.97 Aligned_cols=51 Identities=20% Similarity=0.639 Sum_probs=41.0
Q ss_pred ccccccccccccC-CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 63 TDCSVCLSEFQED-ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 63 ~~C~ICle~f~~~-~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
..|+||...+... +.+..+ .|||.+|..||.+||.....||.|+..+....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 5799999988654 333344 39999999999999999889999999876543
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.45 E-value=0.16 Score=57.16 Aligned_cols=46 Identities=24% Similarity=0.734 Sum_probs=37.3
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
.+-..|.||++.+..--.+ . .|||.||..|+..|+..+..||+|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhh
Confidence 3445899999998743222 2 49999999999999999999999974
No 98
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.53 E-value=0.64 Score=38.94 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=48.6
Q ss_pred cccCCCCCHHHHhhccceeecccC--CCCCCccccccccccccC----------CceeecCCCCCcccHhhHHHHHhcCC
Q 048328 34 YINTIGLPQSVIDSIAVFKYKKDV--GLIEGTDCSVCLSEFQED----------ESLRLLPKCNHAFHISCIDTWLRSHT 101 (318)
Q Consensus 34 ~i~~~GL~~~~I~~Lp~~~~~~~~--~l~e~~~C~ICle~f~~~----------~~~~~lP~CgH~FH~~CI~~Wl~~~~ 101 (318)
+|.+.-|.++.-.-+|.-.+.... .......|.-|+..|... ......++|++.||.+|=.-+-..-.
T Consensus 25 LVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 25 LILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred EeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc
Confidence 444555666665555555554321 112235699999988643 12234668999999999888777777
Q ss_pred CCCCcc
Q 048328 102 NCPLCR 107 (318)
Q Consensus 102 tCP~CR 107 (318)
+||-|-
T Consensus 105 ~CPGC~ 110 (112)
T TIGR00622 105 CCPGCI 110 (112)
T ss_pred CCcCCC
Confidence 899995
No 99
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=86.91 E-value=0.74 Score=46.79 Aligned_cols=34 Identities=35% Similarity=0.712 Sum_probs=28.4
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL 97 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl 97 (318)
.|+..|+||...|.++ +++| |+|.+|..|...-+
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhc
Confidence 3568999999999887 7787 99999999987543
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=0.6 Score=45.01 Aligned_cols=55 Identities=24% Similarity=0.568 Sum_probs=38.5
Q ss_pred cccccccc-cccC-CceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCccCCC
Q 048328 64 DCSVCLSE-FQED-ESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFVAQA 119 (318)
Q Consensus 64 ~C~ICle~-f~~~-~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~~~~ 119 (318)
.|++|... +-.+ ..+.+-+ |+|..|..|....+.. ...||.|-..+-...+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q~ 59 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQT 59 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhcccchhh
Confidence 58899863 3333 3444455 9999999999998755 56799998766555554443
No 101
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.47 E-value=0.53 Score=51.31 Aligned_cols=36 Identities=22% Similarity=0.590 Sum_probs=28.5
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL 97 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl 97 (318)
..+..|.+|...+... ...+-| |||.||..||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567899999877543 456677 99999999998765
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=0.5 Score=43.50 Aligned_cols=40 Identities=35% Similarity=0.850 Sum_probs=29.4
Q ss_pred ccccccccccCCceeecCCCCC-cccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 65 CSVCLSEFQEDESLRLLPKCNH-AFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH-~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
|-+|.+. ...+.++| |.| .+|..|-.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 7777665 45678899 998 688888643 4569999886543
No 103
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.22 E-value=0.35 Score=34.61 Aligned_cols=44 Identities=27% Similarity=0.774 Sum_probs=24.9
Q ss_pred cccccccccccCCceeecCCC-CCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 64 DCSVCLSEFQEDESLRLLPKC-NHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~C-gH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.|--|+-.. ..++ +| .|..|..|+...+.....||+|..+++..
T Consensus 4 nCKsCWf~~---k~Li---~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN---KGLI---KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S-----SSEE---E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC---CCee---eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 466666543 2233 36 59999999999999999999999887643
No 104
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.19 E-value=0.6 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.973 Sum_probs=21.2
Q ss_pred CCCCcccHhhHHHHHhcCCCCCC
Q 048328 83 KCNHAFHISCIDTWLRSHTNCPL 105 (318)
Q Consensus 83 ~CgH~FH~~CI~~Wl~~~~tCP~ 105 (318)
.|+|+.|..|...|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999999999984
No 105
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=83.65 E-value=0.75 Score=33.29 Aligned_cols=43 Identities=33% Similarity=0.635 Sum_probs=22.9
Q ss_pred ccccccccccC------CceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 65 CSVCLSEFQED------ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 65 C~ICle~f~~~------~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
|.-|+..|... ......|+|++.||.+|=.---..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55677777654 24566778999999999543223456799883
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.07 E-value=0.6 Score=50.43 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=38.3
Q ss_pred CCccccccccccccCCc-eeecC--CCCCcccHhhHHHHHhc------CCCCCCcccCCCCCC
Q 048328 61 EGTDCSVCLSEFQEDES-LRLLP--KCNHAFHISCIDTWLRS------HTNCPLCRAPILSGA 114 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~-~~~lP--~CgH~FH~~CI~~Wl~~------~~tCP~CR~~i~~~~ 114 (318)
+...|.||+-+|..++. .-.+| .|+|.||..||..|+.+ +..|++|..-|..+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 45679999998887331 11222 59999999999999854 446899987665543
No 107
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.96 E-value=1.1 Score=44.80 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=36.2
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcC---CCCCCccc
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH---TNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~---~tCP~CR~ 108 (318)
-..|||=.+.-.+......+. |||+.+..-|.+..+.. ..||+|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 357999887776666677787 99999999999977653 46999944
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=0.79 Score=43.60 Aligned_cols=50 Identities=22% Similarity=0.694 Sum_probs=34.2
Q ss_pred CCccccccccccccCCce-eecCCC-----CCcccHhhHHHHHhc--------CCCCCCcccCCC
Q 048328 61 EGTDCSVCLSEFQEDESL-RLLPKC-----NHAFHISCIDTWLRS--------HTNCPLCRAPIL 111 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~-~~lP~C-----gH~FH~~CI~~Wl~~--------~~tCP~CR~~i~ 111 (318)
.+-.|-||+..=++.-.. .+-| | .|-.|..|+..|+-. .-+||.|++...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 345689999875543221 3445 5 388999999999943 135999998754
No 109
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.05 E-value=0.68 Score=43.73 Aligned_cols=49 Identities=31% Similarity=0.700 Sum_probs=36.8
Q ss_pred CCccccccccc--cccCCceeecCCCCCcccHhhHHHHHhc-CCCCC--CcccC
Q 048328 61 EGTDCSVCLSE--FQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCP--LCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~--f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP--~CR~~ 109 (318)
++..||||..+ +.++..+.+.|.|-|..|..|+..-+.. ...|| -|-+-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 45689999874 3444455666789999999999998865 55799 77543
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.83 E-value=0.84 Score=44.22 Aligned_cols=85 Identities=19% Similarity=0.364 Sum_probs=50.1
Q ss_pred CCCCcccccCCCCCHHHHhhccceee--------cccCCCCCCcccccccccccc-------------------CCceee
Q 048328 28 LDHPIWYINTIGLPQSVIDSIAVFKY--------KKDVGLIEGTDCSVCLSEFQE-------------------DESLRL 80 (318)
Q Consensus 28 ~~~p~~~i~~~GL~~~~I~~Lp~~~~--------~~~~~l~e~~~C~ICle~f~~-------------------~~~~~~ 80 (318)
+-.|+.+...+.++...|+.|...-. ....+ ....|-.|+-.=.. +...--
T Consensus 245 ~~~pi~vp~~i~~~~~~~~~~~~~f~~~ia~n~v~~~~~--~sekcfac~~~e~~~ki~~~c~~~~~~~~~~~~ga~c~n 322 (381)
T KOG3899|consen 245 LEVPIFVPPHINVPLTFMEELKEDFIQRIASNTVTHRVK--ASEKCFACGTEENMVKIERSCDGQEQRVFFHDIGAPCEN 322 (381)
T ss_pred cccceecCCcccccHHHHHHHHHHHHHHHhcCCCCcccc--hhhhhHhhccCCCchhhhhcccchhhcccccccCCcccc
Confidence 56788888888888777766633111 11111 12348777643110 001111
Q ss_pred cCCCCCcccHhhHHHHHhc-------------CCCCCCcccCCCCCCc
Q 048328 81 LPKCNHAFHISCIDTWLRS-------------HTNCPLCRAPILSGAF 115 (318)
Q Consensus 81 lP~CgH~FH~~CI~~Wl~~-------------~~tCP~CR~~i~~~~~ 115 (318)
+ -|...+|..|+.+|+.. +-+||+||+.+.-.+.
T Consensus 323 c-~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 323 C-ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred c-ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 1 26778899999999853 3569999998875543
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.30 E-value=1.2 Score=46.35 Aligned_cols=47 Identities=34% Similarity=0.910 Sum_probs=37.9
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
....|.||+..+ ..+..+ |. |..|+..|+..+..||+|+..+.....
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 456899999998 345565 88 899999999999999999987765543
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.40 E-value=0.79 Score=45.90 Aligned_cols=38 Identities=24% Similarity=0.653 Sum_probs=27.3
Q ss_pred CCccccccccccccC-CceeecCCCCCcccHhhHHHHHhc
Q 048328 61 EGTDCSVCLSEFQED-ESLRLLPKCNHAFHISCIDTWLRS 99 (318)
Q Consensus 61 e~~~C~ICle~f~~~-~~~~~lP~CgH~FH~~CI~~Wl~~ 99 (318)
...+|.||+...... .... ...|+|.||..|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence 357899999544333 3333 3369999999999988864
No 113
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=78.32 E-value=1.4 Score=47.79 Aligned_cols=57 Identities=23% Similarity=0.585 Sum_probs=40.9
Q ss_pred CCCccccccccccccCCceeecC-CCC---CcccHhhHHHHHhc--CCCCCCcccCCCCCCccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLP-KCN---HAFHISCIDTWLRS--HTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP-~Cg---H~FH~~CI~~Wl~~--~~tCP~CR~~i~~~~~~~ 117 (318)
.++..|-||..+=..++.+. -| +|. -..|..|+.+|+.- ...|-+|+.++..++...
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
Confidence 34578999998866555443 34 333 36899999999975 456999999887765543
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.58 E-value=0.89 Score=48.17 Aligned_cols=45 Identities=20% Similarity=0.507 Sum_probs=31.3
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
.+-..|.||+..|......-+.+.|||..|..|+.... +.+|| |.
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~ 53 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TK 53 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CC
Confidence 44568999998886543222222599999999998754 45788 43
No 115
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.56 E-value=0.67 Score=49.45 Aligned_cols=48 Identities=33% Similarity=0.803 Sum_probs=36.6
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc---CCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~~i~~ 112 (318)
...+|+||+..+..+ ..+ +|.|.|+..|+..-+.. ...||+|+..+..
T Consensus 20 k~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 357999999998877 333 59999999998765543 4569999965543
No 116
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.34 E-value=1.4 Score=41.49 Aligned_cols=51 Identities=27% Similarity=0.784 Sum_probs=36.9
Q ss_pred CccccccccccccCCc-eeecCCCC-----CcccHhhHHHHHh--cCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDES-LRLLPKCN-----HAFHISCIDTWLR--SHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~-~~~lP~Cg-----H~FH~~CI~~Wl~--~~~tCP~CR~~i~~~ 113 (318)
+..|-||......... ....| |. +..|..|+..|+. ....|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4789999997654321 33455 54 5789999999997 456799998876554
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.99 E-value=2.5 Score=45.59 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=30.8
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPL 105 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~ 105 (318)
..|.+|-..+.. .....+.|+|.-|..|+.+|+.....||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 467777665431 23345579999999999999999888876
No 118
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.71 E-value=1.8 Score=40.11 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=35.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
..|.+|....-.+ +.+..|+-.+|..|+..++++...||.|..-+
T Consensus 182 k~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 4799999876544 22234888899999999999999999995444
No 119
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=72.17 E-value=3 Score=41.02 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=43.7
Q ss_pred CCCCHHHHhhccceeecccCCCC--CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 38 IGLPQSVIDSIAVFKYKKDVGLI--EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 38 ~GL~~~~I~~Lp~~~~~~~~~l~--e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
.-|.++.-.-+|.-.+....... ....|-.|.+....... ..++.|.|.||.+|=.---..-..||.|-.
T Consensus 304 ~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~-y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 304 PHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGR-YRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred hHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCc-EEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 34555555555665554432222 33459999777665443 344569999999996554445567999963
No 120
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.82 E-value=6 Score=28.15 Aligned_cols=43 Identities=23% Similarity=0.649 Sum_probs=20.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCcccC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRAP 109 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-----~~tCP~CR~~ 109 (318)
..|+|....+..| ++... |.|.-|.+ +..|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4799998888766 55554 99976543 3445532 2359999753
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.74 E-value=4.8 Score=39.55 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=36.3
Q ss_pred cccccccccccc-CCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 63 TDCSVCLSEFQE-DESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 63 ~~C~ICle~f~~-~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
..|+||.+.... .....-.| |++..|..|+..-...+..||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccc
Confidence 679999997733 33334455 9999999998887778899999996543
No 122
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=66.66 E-value=3.1 Score=25.93 Aligned_cols=23 Identities=35% Similarity=0.784 Sum_probs=13.6
Q ss_pred cccccccccccCCceeecCCCCCcc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAF 88 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~F 88 (318)
.|+-|...+. ......|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4677766653 3344555677766
No 123
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.53 E-value=3.5 Score=41.37 Aligned_cols=43 Identities=21% Similarity=0.499 Sum_probs=31.5
Q ss_pred cccccccccccc--CCceeecCCCCCcccHhhHHHHHhcCCCCCCc
Q 048328 63 TDCSVCLSEFQE--DESLRLLPKCNHAFHISCIDTWLRSHTNCPLC 106 (318)
Q Consensus 63 ~~C~ICle~f~~--~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~C 106 (318)
-.|++|.-.+.. +-...... |||.||..|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 578888776543 33344555 99999999999998877777555
No 124
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.27 E-value=6.3 Score=35.93 Aligned_cols=40 Identities=40% Similarity=0.918 Sum_probs=28.8
Q ss_pred Cccccccccc-----cccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 62 GTDCSVCLSE-----FQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 62 ~~~C~ICle~-----f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
+..|-||-+. |+. +.+...+.|+-+||..|... ..||.|-
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4678888753 222 25667778999999999752 6799994
No 125
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.37 E-value=8.1 Score=38.00 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc---CCCCCCccc
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRA 108 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~ 108 (318)
+..-..||+-.+.-........+. |||+.-..-+...-+. ...||+|-.
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 345578998666555444556665 9999999888876544 346999943
No 126
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.92 E-value=5.6 Score=37.93 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=36.7
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCcc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFV 116 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~ 116 (318)
..|+|---+|........+..|||+|-..-+.+. ...+|++|.+.+...+..
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 4688876666544444334459999998887764 367899999988776544
No 127
>PLN02436 cellulose synthase A
Probab=59.11 E-value=10 Score=42.66 Aligned_cols=51 Identities=20% Similarity=0.544 Sum_probs=36.2
Q ss_pred Cccccccccccc---cCCceeecCCCCCcccHhhHHHHH-hcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQ---EDESLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~---~~~~~~~lP~CgH~FH~~CI~~Wl-~~~~tCP~CR~~i~~ 112 (318)
...|.||-+++. +++..+.+..|+--.|..|.+-=. ..++.||.|++....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 348999999864 344445455688889999984322 236789999998763
No 128
>PLN02189 cellulose synthase
Probab=58.97 E-value=10 Score=42.52 Aligned_cols=51 Identities=20% Similarity=0.471 Sum_probs=36.5
Q ss_pred Ccccccccccccc---CCceeecCCCCCcccHhhHHHHH-hcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQE---DESLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~~---~~~~~~lP~CgH~FH~~CI~~Wl-~~~~tCP~CR~~i~~ 112 (318)
...|.||-+++.. ++..+.+..|+--.|..|.+-=. ..++.||.|++.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3589999998753 33444455688889999984322 336789999998764
No 129
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.86 E-value=5.2 Score=40.63 Aligned_cols=36 Identities=22% Similarity=0.663 Sum_probs=28.6
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS 99 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~ 99 (318)
....|-||.+.+.. .+..+. |+|.||..|+...+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 35789999998865 344555 9999999999998864
No 130
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=57.28 E-value=6.7 Score=26.12 Aligned_cols=27 Identities=30% Similarity=0.723 Sum_probs=16.8
Q ss_pred ccccccccccccCCc-------eeecCCCCCccc
Q 048328 63 TDCSVCLSEFQEDES-------LRLLPKCNHAFH 89 (318)
Q Consensus 63 ~~C~ICle~f~~~~~-------~~~lP~CgH~FH 89 (318)
..|+-|...|..++. ....+.|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 468888887776543 234556777664
No 131
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=17 Score=35.33 Aligned_cols=39 Identities=15% Similarity=0.436 Sum_probs=28.1
Q ss_pred CCccccccccccccCCceeecC-CCCCcccHhhHHHHHhcC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLP-KCNHAFHISCIDTWLRSH 100 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP-~CgH~FH~~CI~~Wl~~~ 100 (318)
.-..|.+|.+.+++..-+ .+| -=.|.||+.|-++-++.+
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 347899999999865332 222 126999999999888763
No 133
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=54.39 E-value=7.5 Score=28.73 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=18.7
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
.+...|.+|...|..-..-.....||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3457899999999654333334469999999987543
No 134
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.36 E-value=5 Score=39.09 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=40.1
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.....|.||...+..+... . .|.|.|+..|...|....+.||.|+..+..
T Consensus 103 ~~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 3456899999988766332 2 499999999999999999999999876544
No 135
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=53.93 E-value=4.9 Score=42.41 Aligned_cols=43 Identities=28% Similarity=0.728 Sum_probs=26.4
Q ss_pred Cccccccccc-----cccCCceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 62 GTDCSVCLSE-----FQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~-----f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
...|.+|... |. .+.++.+-.|+++||..|+.. ....||.|-.
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 4567777321 22 223333445999999999654 4455999943
No 136
>PLN02400 cellulose synthase
Probab=51.53 E-value=13 Score=41.98 Aligned_cols=51 Identities=16% Similarity=0.438 Sum_probs=35.3
Q ss_pred Ccccccccccccc---CCceeecCCCCCcccHhhHHH-HHhcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQE---DESLRLLPKCNHAFHISCIDT-WLRSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~~---~~~~~~lP~CgH~FH~~CI~~-Wl~~~~tCP~CR~~i~~ 112 (318)
...|-||-+++.. ++..+.+-.|+--.|..|.+- .-..++.||.|++....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 3589999998654 333444445777799999842 22336789999998764
No 137
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=51.36 E-value=8.7 Score=36.85 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=34.2
Q ss_pred ccccccccccccCCceee-c--CCCCCcccHhhHHHHHhc---------CCCCCCcccCCC
Q 048328 63 TDCSVCLSEFQEDESLRL-L--PKCNHAFHISCIDTWLRS---------HTNCPLCRAPIL 111 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~-l--P~CgH~FH~~CI~~Wl~~---------~~tCP~CR~~i~ 111 (318)
..|-+|.+++...+..+. . |.|+-.+|..|+..-+.. ...||.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999999954443332 2 268889999999884422 246999988443
No 138
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.57 E-value=17 Score=41.01 Aligned_cols=51 Identities=18% Similarity=0.492 Sum_probs=35.8
Q ss_pred Ccccccccccccc---CCceeecCCCCCcccHhhHH-HHHhcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQE---DESLRLLPKCNHAFHISCID-TWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~~---~~~~~~lP~CgH~FH~~CI~-~Wl~~~~tCP~CR~~i~~ 112 (318)
...|-||-+++.. ++..+.+..|+--.|..|.+ +.-..++.||.|++.+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3489999998654 33344444577789999984 222347789999998763
No 139
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.25 E-value=11 Score=26.01 Aligned_cols=43 Identities=28% Similarity=0.612 Sum_probs=27.8
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHh------cCCCCCCcc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR------SHTNCPLCR 107 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~------~~~tCP~CR 107 (318)
.|.||.... ....++....|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388898843 3344455556999999999864332 134577774
No 140
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=49.11 E-value=10 Score=29.02 Aligned_cols=13 Identities=31% Similarity=0.991 Sum_probs=9.2
Q ss_pred cccHhhHHHHHhc
Q 048328 87 AFHISCIDTWLRS 99 (318)
Q Consensus 87 ~FH~~CI~~Wl~~ 99 (318)
-||..|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 141
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.07 E-value=9.8 Score=41.36 Aligned_cols=46 Identities=33% Similarity=0.670 Sum_probs=29.6
Q ss_pred Ccccccccccccc---------CCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQE---------DESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~---------~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
+..|+-|...|.. .....++|.|.|..|..=|.+ ...||+|...+.
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 3456666665542 112345678999888766643 578999987654
No 142
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.48 E-value=13 Score=24.69 Aligned_cols=27 Identities=26% Similarity=0.663 Sum_probs=16.4
Q ss_pred ccccccccccccCCc-------eeecCCCCCccc
Q 048328 63 TDCSVCLSEFQEDES-------LRLLPKCNHAFH 89 (318)
Q Consensus 63 ~~C~ICle~f~~~~~-------~~~lP~CgH~FH 89 (318)
.+|+=|...|..++. ....+.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 468888887776542 123445777663
No 143
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.82 E-value=12 Score=35.79 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHh
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR 98 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~ 98 (318)
..|+.||..+.+| +++| =||+|+..||.+++.
T Consensus 44 dcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 5799999999887 5566 899999999998874
No 144
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.09 E-value=28 Score=27.47 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=20.6
Q ss_pred CCcccccccccccc---CCceeecCCCCCcccHhhHHHHH-hcCCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQE---DESLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~---~~~~~~lP~CgH~FH~~CI~~Wl-~~~~tCP~CR~~i~~ 112 (318)
....|-||-+.+.. ++..+..-.|+--.|..|..-=. ...+.||.|++.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 34689999998654 33333333578888999986433 347789999987653
No 145
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=44.68 E-value=3.8 Score=39.16 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=21.5
Q ss_pred CccccccccccccCCceeec-CCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 62 GTDCSVCLSEFQEDESLRLL-PKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~l-P~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
...||||-..-........- .+-.|.+|..|-..|-.....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 36899998864322111000 013577889999999888889999944
No 146
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=44.21 E-value=7.8 Score=27.67 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=16.3
Q ss_pred CceeecCCCCCcccHhhHHHH
Q 048328 76 ESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 76 ~~~~~lP~CgH~FH~~CI~~W 96 (318)
...+..+.|+|.||..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344566569999999998887
No 147
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=43.69 E-value=21 Score=35.22 Aligned_cols=52 Identities=19% Similarity=0.549 Sum_probs=32.7
Q ss_pred CCcccccccccccc----------------CCceeecCCCCCcccHhhHHHHHhc---------CCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQE----------------DESLRLLPKCNHAFHISCIDTWLRS---------HTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~----------------~~~~~~lP~CgH~FH~~CI~~Wl~~---------~~tCP~CR~~i~~~ 113 (318)
.+.+|++|+..-.. +-.....| |||+--..-..-|.+. +..||.|-+.+...
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 35689999975221 01122356 9997666666677643 35699998776544
No 148
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.39 E-value=19 Score=22.61 Aligned_cols=36 Identities=22% Similarity=0.611 Sum_probs=22.5
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
|..|...+......... =+..||..|+ .|..|...+
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 77788777654222222 4677888774 677777655
No 149
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.14 E-value=8 Score=39.04 Aligned_cols=51 Identities=22% Similarity=0.564 Sum_probs=0.0
Q ss_pred Ccccccccccccc----------------CCceeecCCCCCcccHhhHHHHHhc---------CCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQE----------------DESLRLLPKCNHAFHISCIDTWLRS---------HTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~----------------~~~~~~lP~CgH~FH~~CI~~Wl~~---------~~tCP~CR~~i~~~ 113 (318)
.-+|++|+..-.. +-...-.| |||+--.....-|-+- +..||.|-.++...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 5689999975211 01223466 9998888888888643 34699998887654
No 150
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.70 E-value=21 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=24.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHH
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL 97 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl 97 (318)
..|.+|-..|..-..-.....||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 47889988776543333333699999999976543
No 152
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.65 E-value=63 Score=23.96 Aligned_cols=46 Identities=24% Similarity=0.684 Sum_probs=33.1
Q ss_pred ccccccccccccCC-ceeecCCCC--CcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 63 TDCSVCLSEFQEDE-SLRLLPKCN--HAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 63 ~~C~ICle~f~~~~-~~~~lP~Cg--H~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
..|-.|-.++..+. ...+ |. ..||..|....| +..||.|-..+...
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 46777877776654 2332 54 479999998876 67899998877654
No 153
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.11 E-value=14 Score=40.38 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=30.7
Q ss_pred CCccccccccccccC----CceeecCCCCCcccHhhHHHHHhcCCCCCCcc
Q 048328 61 EGTDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 107 (318)
Q Consensus 61 e~~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR 107 (318)
.+..|.-|++..... ..+...- |+|.||..|+..-..+.. |-.|-
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhh
Confidence 445799999876532 3445554 999999999976655444 65553
No 154
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=33.98 E-value=25 Score=35.69 Aligned_cols=50 Identities=20% Similarity=0.471 Sum_probs=33.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhc---------------------C---CCCCCcccCCCCCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---------------------H---TNCPLCRAPILSGA 114 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---------------------~---~tCP~CR~~i~~~~ 114 (318)
.+|+||+-++........ .|.-.+|..|+.+.-.- . ..||.|...+....
T Consensus 75 ~ecpicflyyps~~n~~r--cC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~ve 148 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVR--CCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVE 148 (482)
T ss_pred ccCceeeeecccccchhh--hhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCccccee
Confidence 589999998765333322 38888999998764310 0 24999988776543
No 155
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=33.58 E-value=38 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=21.6
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 78 LRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 78 ~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.+.+|.|++. .+.+.+...|+.|++++.-+..
T Consensus 69 ~V~CP~C~K~------TKmLGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 69 QVECPNCGKQ------TKMLGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred eeECCCCCCh------HhhhchhhccCcCCCcCccCch
Confidence 3456677773 3445556789999999876543
No 156
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=33.32 E-value=32 Score=24.53 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=14.0
Q ss_pred cCCCCCcccHhhHHHHHhcCCCCCCc
Q 048328 81 LPKCNHAFHISCIDTWLRSHTNCPLC 106 (318)
Q Consensus 81 lP~CgH~FH~~CI~~Wl~~~~tCP~C 106 (318)
.+.|||.|-..=-.. ......||.|
T Consensus 31 C~~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEccHhhh-ccCCCCCCCC
Confidence 345777665432211 2446679988
No 157
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.19 E-value=37 Score=38.31 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=32.6
Q ss_pred CCCccccccccccccCCceeecCCCCC-----cccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNH-----AFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH-----~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.....|+-|-... ....+|.||. .||..|- +......||-|.......
T Consensus 624 Vg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 624 IGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPY 676 (1121)
T ss_pred ccCccCCCCCCcC----CcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCcc
Confidence 4456899998774 2356778984 6999993 333456799998766543
No 158
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=33.08 E-value=19 Score=41.94 Aligned_cols=50 Identities=30% Similarity=0.550 Sum_probs=36.8
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAPI 110 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~i 110 (318)
.....|.||.........+... .|.-.||..|+..-+... -.||-|+..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3557899999987764333333 588999999999887653 3699998754
No 159
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=32.77 E-value=28 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCccccccccccccCC-ceeecCCCCCcccHhhHHH
Q 048328 61 EGTDCSVCLSEFQEDE-SLRLLPKCNHAFHISCIDT 95 (318)
Q Consensus 61 e~~~C~ICle~f~~~~-~~~~lP~CgH~FH~~CI~~ 95 (318)
.+..|.+|...|..-. .-.....|+|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 5678999998765322 2244556999999998543
No 160
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=32.53 E-value=13 Score=40.19 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=30.3
Q ss_pred ccccccccccccCCc----eeecC--CCCCcccHhhHHHHH----------hcCCCCCCcccCC
Q 048328 63 TDCSVCLSEFQEDES----LRLLP--KCNHAFHISCIDTWL----------RSHTNCPLCRAPI 110 (318)
Q Consensus 63 ~~C~ICle~f~~~~~----~~~lP--~CgH~FH~~CI~~Wl----------~~~~tCP~CR~~i 110 (318)
.+|.||-+.=.+... +..+. .|...||..|-...- ...+.|-+|+..|
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 589999987443221 11111 488899999986531 1246799998654
No 161
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=31.87 E-value=28 Score=24.24 Aligned_cols=40 Identities=23% Similarity=0.564 Sum_probs=25.4
Q ss_pred ccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 65 CSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 65 C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
|..|...+.....++. . -+..||..|+ .|-.|...+....
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEcccc--------ccCCCCCccCCCe
Confidence 6667777664433322 2 6778888774 6888887776554
No 162
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=24 Score=30.79 Aligned_cols=18 Identities=22% Similarity=0.792 Sum_probs=13.3
Q ss_pred CCCCCcccccccc-ccccC
Q 048328 58 GLIEGTDCSVCLS-EFQED 75 (318)
Q Consensus 58 ~l~e~~~C~ICle-~f~~~ 75 (318)
+..++.+|-||+. .|.++
T Consensus 61 Gv~ddatC~IC~KTKFADG 79 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG 79 (169)
T ss_pred ccCcCcchhhhhhcccccc
Confidence 4567899999997 45554
No 163
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.11 E-value=16 Score=35.73 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=30.0
Q ss_pred CccccccccccccCCceeec---CCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 62 GTDCSVCLSEFQEDESLRLL---PKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~l---P~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
...||||-..-.... ++.. .+=.+.+|..|-..|-..+..||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 358999988632211 1110 113366788899999888889999964
No 164
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=28.56 E-value=19 Score=39.57 Aligned_cols=34 Identities=18% Similarity=0.558 Sum_probs=24.6
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHH
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL 97 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl 97 (318)
...|-.|....- .....+++|++.||..|+..|.
T Consensus 229 ~~mC~~C~~tlf--n~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLF--NIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhccccc--ceeEEccccCCeeeecchhhcc
Confidence 346777766432 2245567899999999999995
No 165
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=28.45 E-value=19 Score=36.41 Aligned_cols=45 Identities=27% Similarity=0.579 Sum_probs=0.0
Q ss_pred CccccccccccccCC-----------ceeecCCCCCcccHhhHHHHHhc------CCCCCCcccCC
Q 048328 62 GTDCSVCLSEFQEDE-----------SLRLLPKCNHAFHISCIDTWLRS------HTNCPLCRAPI 110 (318)
Q Consensus 62 ~~~C~ICle~f~~~~-----------~~~~lP~CgH~FH~~CI~~Wl~~------~~tCP~CR~~i 110 (318)
-..|++=|..+..+. ..+.+ .|||++-. ..|-.. ..+||+||..-
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeec-cccceeee---cccccccccccccccCCCccccC
Confidence 357888877665432 22345 49997765 356532 46799999753
No 166
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.32 E-value=65 Score=36.54 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=36.0
Q ss_pred CCcccccccccccc---CCceeecCCCCCcccHhhHHHHH-hcCCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQE---DESLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~---~~~~~~lP~CgH~FH~~CI~~Wl-~~~~tCP~CR~~i~~ 112 (318)
....|.||-+.+.. ++..+.+-.|+--.|..|.+-=. ..++.||.|++....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 34679999998654 33334444577789999984322 336789999998763
No 167
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.57 E-value=9.1 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.565 Sum_probs=20.3
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
..||.|..++... =+|.+|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHH
Confidence 4789998876433 256666667554 334556898887653
No 168
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.99 E-value=76 Score=26.07 Aligned_cols=47 Identities=21% Similarity=0.541 Sum_probs=28.7
Q ss_pred CccccccccccccCCcee----ecCCC---CCcccHhhHHHHHhc---------CCCCCCccc
Q 048328 62 GTDCSVCLSEFQEDESLR----LLPKC---NHAFHISCIDTWLRS---------HTNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~----~lP~C---gH~FH~~CI~~Wl~~---------~~tCP~CR~ 108 (318)
...|-.|...-......- ..+.| .=.||..||..++.. .-.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 457777777433221110 11346 667999999888743 235999986
No 169
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.85 E-value=34 Score=27.85 Aligned_cols=13 Identities=31% Similarity=1.002 Sum_probs=11.3
Q ss_pred cccHhhHHHHHhc
Q 048328 87 AFHISCIDTWLRS 99 (318)
Q Consensus 87 ~FH~~CI~~Wl~~ 99 (318)
-||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999964
No 170
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.49 E-value=48 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=21.7
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHH
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT 95 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~ 95 (318)
...|.||......-...... .|...||..|...
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHP-GCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHH
Confidence 57899999873222111111 3888999999865
No 171
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.25 E-value=25 Score=35.13 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=10.6
Q ss_pred CCcccccccccccc
Q 048328 61 EGTDCSVCLSEFQE 74 (318)
Q Consensus 61 e~~~C~ICle~f~~ 74 (318)
.+.-|++|-+...-
T Consensus 14 l~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 14 LGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccCcccc
Confidence 45689999988653
No 172
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=24.23 E-value=75 Score=31.44 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCCCHHHHhhccceeecc--cCCCCCCccccccccccccCC----------ceeecCCCCCcccHhhHHHHHhcCCCCCC
Q 048328 38 IGLPQSVIDSIAVFKYKK--DVGLIEGTDCSVCLSEFQEDE----------SLRLLPKCNHAFHISCIDTWLRSHTNCPL 105 (318)
Q Consensus 38 ~GL~~~~I~~Lp~~~~~~--~~~l~e~~~C~ICle~f~~~~----------~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~ 105 (318)
.-|.++.-.-+|.-++.. +...-..+.|-+|...|..+. .-..++.|+..||.+|-.---..-..||.
T Consensus 336 thLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~g 415 (421)
T COG5151 336 THLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIG 415 (421)
T ss_pred HHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCC
Confidence 344555554445444432 222223457999999886532 12234469999999996554444567999
Q ss_pred ccc
Q 048328 106 CRA 108 (318)
Q Consensus 106 CR~ 108 (318)
|..
T Consensus 416 Ce~ 418 (421)
T COG5151 416 CEL 418 (421)
T ss_pred CcC
Confidence 954
No 173
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=24.22 E-value=30 Score=24.55 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q 048328 62 GTDCSVCLSEFQ 73 (318)
Q Consensus 62 ~~~C~ICle~f~ 73 (318)
...||.|-..|.
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 457999988654
No 174
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.03 E-value=27 Score=34.14 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCccccccccccccCCceee--cCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 61 EGTDCSVCLSEFQEDESLRL--LPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~--lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
....||||-..-.... +.. ..+=.|.+|..|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3578999987632221 111 0123466788899999888889999964
No 175
>PLN02195 cellulose synthase A
Probab=23.29 E-value=72 Score=35.94 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=35.3
Q ss_pred Ccccccccccccc---CCceeecCCCCCcccHhhHHHHH-hcCCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQE---DESLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~---~~~~~~lP~CgH~FH~~CI~~Wl-~~~~tCP~CR~~i~ 111 (318)
...|.||-+.+.. ++..+.+-.|+--.|..|.+-=- ..++.||.|++...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3589999997654 33344444688889999984211 23678999999887
No 176
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=22.85 E-value=51 Score=30.75 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=18.2
Q ss_pred ccccccccccccCCceeecCCCCCcc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAF 88 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~F 88 (318)
..||+|...+........++ .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 47999999987555555555 67877
No 177
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=22.59 E-value=52 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=16.9
Q ss_pred ecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 80 LLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 80 ~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
.+++|||.|+- -+..||.|....
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 34579998875 456799998763
No 178
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.74 E-value=53 Score=31.41 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=30.3
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcC--CCCCCccc
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRA 108 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~--~tCP~CR~ 108 (318)
...|||=+..+..| ++-.+|||+|-.+-|...+... ..||+--+
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 35688876666655 2223699999999999987663 34776443
Done!