Query 048328
Match_columns 318
No_of_seqs 257 out of 1625
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 4.4E-16 1.5E-20 122.4 8.0 80 32-112 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.5E-16 1.2E-20 118.0 3.9 70 42-112 3-72 (75)
3 2ect_A Ring finger protein 126 99.5 8.6E-14 2.9E-18 105.3 6.5 58 59-117 12-69 (78)
4 2ep4_A Ring finger protein 24; 99.4 9.8E-14 3.3E-18 104.0 6.5 55 59-114 12-66 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.4 5.1E-14 1.7E-18 99.6 4.6 52 60-111 3-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.4 2.7E-13 9.1E-18 100.3 6.2 53 60-113 12-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.3 5.3E-13 1.8E-17 102.7 4.1 54 60-113 13-77 (81)
8 1v87_A Deltex protein 2; ring- 99.3 1.6E-12 5.4E-17 105.1 6.8 52 61-113 24-95 (114)
9 3ng2_A RNF4, snurf, ring finge 99.3 9.9E-13 3.4E-17 97.3 4.7 55 60-115 8-66 (71)
10 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.4E-17 95.8 4.7 53 59-112 12-68 (69)
11 2djb_A Polycomb group ring fin 99.3 2.7E-12 9.4E-17 95.9 6.2 57 58-117 11-67 (72)
12 3dpl_R Ring-box protein 1; ubi 99.3 1.7E-12 5.8E-17 105.5 4.7 51 60-111 35-100 (106)
13 2ecm_A Ring finger and CHY zin 99.3 2.8E-12 9.4E-17 90.4 5.0 51 60-111 3-54 (55)
14 2xeu_A Ring finger protein 4; 99.3 1.6E-12 5.5E-17 93.9 3.4 54 61-115 2-59 (64)
15 2ecn_A Ring finger protein 141 99.2 2.4E-12 8.2E-17 95.3 2.6 51 59-114 12-62 (70)
16 2d8t_A Dactylidin, ring finger 99.2 2.4E-12 8.3E-17 96.0 2.6 52 60-115 13-64 (71)
17 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.4E-16 93.0 5.6 54 58-114 11-66 (74)
18 2ct2_A Tripartite motif protei 99.2 1.6E-11 5.4E-16 94.3 6.0 55 58-113 11-69 (88)
19 1chc_A Equine herpes virus-1 r 99.2 9.2E-12 3.2E-16 91.5 4.4 49 61-112 4-52 (68)
20 2ecy_A TNF receptor-associated 99.2 1.6E-11 5.4E-16 90.1 5.1 52 59-114 12-64 (66)
21 2ysl_A Tripartite motif-contai 99.2 1.6E-11 5.5E-16 91.3 5.2 52 58-113 16-70 (73)
22 4ayc_A E3 ubiquitin-protein li 99.2 7.2E-12 2.5E-16 105.2 2.7 49 61-113 52-100 (138)
23 2ecw_A Tripartite motif-contai 99.2 3.4E-11 1.2E-15 91.3 6.2 52 59-114 16-73 (85)
24 1t1h_A Gspef-atpub14, armadill 99.2 2.1E-11 7.1E-16 92.1 5.0 52 59-114 5-57 (78)
25 2csy_A Zinc finger protein 183 99.2 2E-11 7E-16 93.0 4.9 48 60-111 13-60 (81)
26 2ecv_A Tripartite motif-contai 99.2 4.6E-11 1.6E-15 90.6 6.4 53 58-114 15-73 (85)
27 2d8s_A Cellular modulator of i 99.1 3E-11 1E-15 93.4 5.0 55 60-116 13-74 (80)
28 4a0k_B E3 ubiquitin-protein li 99.1 4.3E-12 1.5E-16 105.0 0.1 52 60-112 46-112 (117)
29 2egp_A Tripartite motif-contai 99.1 1.6E-11 5.3E-16 92.6 3.0 54 58-115 8-68 (79)
30 3lrq_A E3 ubiquitin-protein li 99.1 9.4E-12 3.2E-16 99.1 1.7 52 60-115 20-73 (100)
31 2ysj_A Tripartite motif-contai 99.1 9.4E-11 3.2E-15 85.0 5.4 45 58-106 16-63 (63)
32 3ztg_A E3 ubiquitin-protein li 99.1 1E-10 3.5E-15 90.9 5.7 51 58-111 9-61 (92)
33 2ct0_A Non-SMC element 1 homol 99.1 1.7E-10 5.8E-15 88.2 6.4 51 61-114 14-66 (74)
34 1g25_A CDK-activating kinase a 99.1 8.6E-11 3E-15 85.9 4.6 55 61-116 2-59 (65)
35 2y43_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 94.8 2.8 50 61-113 21-70 (99)
36 4ap4_A E3 ubiquitin ligase RNF 99.1 7.3E-11 2.5E-15 96.4 4.3 55 60-115 5-63 (133)
37 3fl2_A E3 ubiquitin-protein li 99.1 7.6E-11 2.6E-15 96.9 4.0 49 60-112 50-99 (124)
38 2ckl_A Polycomb group ring fin 99.1 6.6E-11 2.3E-15 95.0 3.4 51 60-113 13-63 (108)
39 2ecj_A Tripartite motif-contai 99.0 1.7E-10 5.8E-15 81.9 4.1 44 59-106 12-58 (58)
40 1jm7_A BRCA1, breast cancer ty 99.0 1.6E-10 5.3E-15 92.6 4.1 50 61-114 20-72 (112)
41 2ckl_B Ubiquitin ligase protei 99.0 1.6E-10 5.3E-15 99.5 4.2 50 60-112 52-102 (165)
42 3hct_A TNF receptor-associated 99.0 1.9E-10 6.4E-15 94.0 3.5 52 58-113 14-66 (118)
43 2kr4_A Ubiquitin conjugation f 99.0 3.4E-10 1.1E-14 87.9 4.5 52 59-114 11-62 (85)
44 1e4u_A Transcriptional repress 99.0 8.8E-10 3E-14 84.6 6.4 57 59-116 8-66 (78)
45 2kre_A Ubiquitin conjugation f 99.0 3.9E-10 1.3E-14 90.4 4.4 53 59-115 26-78 (100)
46 1z6u_A NP95-like ring finger p 99.0 3.1E-10 1.1E-14 97.1 4.0 50 60-113 76-126 (150)
47 1wgm_A Ubiquitin conjugation f 98.9 5.9E-10 2E-14 89.1 4.6 52 60-115 20-72 (98)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 3.6E-10 1.2E-14 92.2 3.1 55 60-115 70-128 (133)
49 3l11_A E3 ubiquitin-protein li 98.9 1.2E-10 4.2E-15 94.3 0.3 49 60-112 13-62 (115)
50 1rmd_A RAG1; V(D)J recombinati 98.9 4.2E-10 1.4E-14 91.2 3.1 50 61-114 22-72 (116)
51 1jm7_B BARD1, BRCA1-associated 98.8 6.9E-10 2.4E-14 90.4 1.9 47 60-112 20-67 (117)
52 2vje_A E3 ubiquitin-protein li 98.8 2.3E-09 7.7E-14 78.9 3.3 49 60-111 6-56 (64)
53 2yu4_A E3 SUMO-protein ligase 98.8 2E-09 6.8E-14 84.9 3.0 53 59-114 4-65 (94)
54 3knv_A TNF receptor-associated 98.8 1.1E-09 3.9E-14 92.7 1.7 50 59-112 28-78 (141)
55 1bor_A Transcription factor PM 98.8 2.6E-09 9E-14 76.3 2.4 47 60-113 4-50 (56)
56 2c2l_A CHIP, carboxy terminus 98.7 4.1E-09 1.4E-13 96.1 4.1 51 60-114 206-257 (281)
57 2y1n_A E3 ubiquitin-protein li 98.7 4.4E-09 1.5E-13 102.9 4.5 49 62-114 332-381 (389)
58 3hcs_A TNF receptor-associated 98.7 5.4E-09 1.8E-13 90.1 3.3 52 58-113 14-66 (170)
59 2vje_B MDM4 protein; proto-onc 98.7 7.1E-09 2.4E-13 76.0 3.1 49 61-111 6-55 (63)
60 4ic3_A E3 ubiquitin-protein li 98.7 3E-09 1E-13 80.2 1.0 45 60-112 22-67 (74)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 6.9E-09 2.4E-13 100.0 2.1 53 60-112 306-373 (381)
62 2f42_A STIP1 homology and U-bo 98.6 1.8E-08 6.1E-13 89.0 3.7 54 58-115 102-156 (179)
63 1wim_A KIAA0161 protein; ring 98.5 4.2E-08 1.4E-12 76.8 3.7 48 61-109 4-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.5 2.5E-08 8.5E-13 75.1 1.7 45 61-113 24-69 (75)
65 2ea5_A Cell growth regulator w 98.4 2.2E-07 7.6E-12 69.1 4.4 46 60-113 13-59 (68)
66 3htk_C E3 SUMO-protein ligase 98.4 8.4E-08 2.9E-12 89.3 2.5 54 59-115 178-235 (267)
67 2yho_A E3 ubiquitin-protein li 98.4 5.7E-08 2E-12 74.4 0.5 45 61-113 17-62 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.6E-07 1.6E-11 66.1 3.8 49 61-112 5-59 (60)
69 2bay_A PRE-mRNA splicing facto 98.3 2.7E-07 9.1E-12 67.5 2.4 52 63-117 4-55 (61)
70 3t6p_A Baculoviral IAP repeat- 98.3 1.4E-07 4.7E-12 91.0 0.5 45 60-112 293-338 (345)
71 3nw0_A Non-structural maintena 98.0 6.3E-06 2.2E-10 75.5 5.5 49 62-113 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.8 1.2E-05 4E-10 64.5 3.7 47 64-113 3-50 (101)
73 2ko5_A Ring finger protein Z; 95.8 0.014 4.7E-07 46.2 5.6 55 59-118 25-79 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.029 9.9E-07 43.6 2.6 35 61-96 2-36 (101)
75 2lri_C Autoimmune regulator; Z 92.8 0.097 3.3E-06 38.5 3.7 46 60-109 10-59 (66)
76 1wil_A KIAA1045 protein; ring 87.6 0.52 1.8E-05 36.6 3.9 36 59-96 12-47 (89)
77 2l5u_A Chromodomain-helicase-D 82.8 0.72 2.5E-05 33.0 2.5 45 60-108 9-57 (61)
78 1we9_A PHD finger family prote 82.3 0.25 8.5E-06 35.4 -0.1 50 60-109 4-58 (64)
79 1z60_A TFIIH basal transcripti 81.0 0.56 1.9E-05 33.9 1.3 43 63-106 16-58 (59)
80 3o36_A Transcription intermedi 79.8 0.47 1.6E-05 40.9 0.7 45 61-109 3-51 (184)
81 3m62_A Ubiquitin conjugation f 79.7 1.1 3.6E-05 48.5 3.5 52 60-115 889-941 (968)
82 3lqh_A Histone-lysine N-methyl 79.2 0.89 3E-05 39.8 2.3 48 62-109 2-63 (183)
83 3u5n_A E3 ubiquitin-protein li 78.8 0.54 1.9E-05 41.4 0.8 45 61-109 6-54 (207)
84 1mm2_A MI2-beta; PHD, zinc fin 75.7 0.96 3.3E-05 32.3 1.2 46 60-109 7-56 (61)
85 1f62_A Transcription factor WS 75.0 1.4 4.9E-05 29.9 2.0 44 64-108 2-49 (51)
86 3i2d_A E3 SUMO-protein ligase 74.9 1 3.5E-05 43.6 1.6 50 63-115 250-303 (371)
87 1fp0_A KAP-1 corepressor; PHD 73.3 3.2 0.00011 32.2 3.8 46 60-109 23-72 (88)
88 2k16_A Transcription initiatio 73.3 1.1 3.7E-05 33.0 1.1 50 60-110 16-69 (75)
89 1weo_A Cellulose synthase, cat 73.3 12 0.00042 29.1 7.0 51 62-112 16-70 (93)
90 3v43_A Histone acetyltransfera 70.7 1.3 4.3E-05 35.3 1.0 84 17-108 24-111 (112)
91 2yql_A PHD finger protein 21A; 70.5 0.59 2E-05 32.7 -0.9 44 60-107 7-54 (56)
92 1xwh_A Autoimmune regulator; P 67.2 1 3.5E-05 32.6 -0.2 46 60-109 6-55 (66)
93 2ro1_A Transcription intermedi 65.5 1.5 5.1E-05 38.2 0.4 44 62-109 2-49 (189)
94 2puy_A PHD finger protein 21A; 64.8 1.1 3.7E-05 31.7 -0.5 45 61-109 4-52 (60)
95 2vpb_A Hpygo1, pygopus homolog 64.3 5.1 0.00017 29.0 3.0 34 61-94 7-41 (65)
96 2cs3_A Protein C14ORF4, MY039 64.2 7.7 0.00026 29.8 4.1 37 62-99 15-52 (93)
97 1dvp_A HRS, hepatocyte growth 63.9 4.3 0.00015 35.8 3.1 36 60-95 159-194 (220)
98 1wep_A PHF8; structural genomi 63.7 6 0.0002 29.4 3.4 48 62-110 12-64 (79)
99 2kgg_A Histone demethylase jar 63.7 7 0.00024 26.7 3.5 44 64-107 4-52 (52)
100 2yt5_A Metal-response element- 61.1 5 0.00017 28.5 2.5 51 60-110 4-62 (66)
101 2yw8_A RUN and FYVE domain-con 59.8 6.1 0.00021 29.6 2.9 35 61-95 18-52 (82)
102 2ysm_A Myeloid/lymphoid or mix 58.9 2.9 0.0001 32.9 1.0 47 60-107 5-55 (111)
103 2ri7_A Nucleosome-remodeling f 58.5 2.2 7.5E-05 36.1 0.2 48 61-109 7-59 (174)
104 4fo9_A E3 SUMO-protein ligase 57.3 8.2 0.00028 37.1 4.0 50 63-115 216-269 (360)
105 1vfy_A Phosphatidylinositol-3- 57.2 7.8 0.00027 28.4 3.0 33 62-94 11-43 (73)
106 3v43_A Histone acetyltransfera 56.8 16 0.00054 28.8 5.0 34 61-94 4-42 (112)
107 2e6r_A Jumonji/ARID domain-con 56.8 1.1 3.6E-05 34.8 -1.9 49 60-109 14-66 (92)
108 1joc_A EEA1, early endosomal a 56.7 7.7 0.00026 31.5 3.2 35 61-95 68-102 (125)
109 3zyq_A Hepatocyte growth facto 56.4 7.2 0.00025 34.7 3.2 37 60-96 162-198 (226)
110 1zbd_B Rabphilin-3A; G protein 55.8 6.2 0.00021 32.7 2.5 35 60-94 53-88 (134)
111 3t7l_A Zinc finger FYVE domain 55.0 9.1 0.00031 29.2 3.2 36 61-96 19-54 (90)
112 2lbm_A Transcriptional regulat 54.4 12 0.00042 31.2 4.2 44 61-108 62-116 (142)
113 1wfk_A Zinc finger, FYVE domai 54.1 9.7 0.00033 29.1 3.2 51 60-110 7-64 (88)
114 1z2q_A LM5-1; membrane protein 54.0 11 0.00038 28.3 3.5 36 61-96 20-55 (84)
115 2xb1_A Pygopus homolog 2, B-ce 52.2 7.1 0.00024 30.8 2.2 48 62-109 3-61 (105)
116 2ct7_A Ring finger protein 31; 51.7 2 6.8E-05 32.6 -1.1 19 79-97 44-62 (86)
117 2lv9_A Histone-lysine N-methyl 51.2 4.1 0.00014 31.7 0.7 44 63-108 29-75 (98)
118 4gne_A Histone-lysine N-methyl 50.9 12 0.0004 29.8 3.3 49 59-113 12-66 (107)
119 2jmo_A Parkin; IBR, E3 ligase, 50.2 2 6.9E-05 32.2 -1.2 15 83-97 55-69 (80)
120 1y02_A CARP2, FYVE-ring finger 50.1 1.9 6.6E-05 35.2 -1.5 48 61-108 18-65 (120)
121 3mpx_A FYVE, rhogef and PH dom 49.2 3.6 0.00012 39.3 0.0 50 61-110 374-430 (434)
122 1x4u_A Zinc finger, FYVE domai 49.2 13 0.00044 27.9 3.2 33 61-93 13-45 (84)
123 2l43_A N-teminal domain from h 49.0 12 0.0004 28.6 2.9 52 60-111 23-77 (88)
124 2ku3_A Bromodomain-containing 48.9 17 0.00057 26.7 3.7 49 60-108 14-65 (71)
125 1weu_A Inhibitor of growth fam 44.8 15 0.00053 28.3 3.0 44 61-109 35-85 (91)
126 2o35_A Hypothetical protein DU 42.4 9.3 0.00032 30.4 1.4 13 87-99 42-54 (105)
127 3fyb_A Protein of unknown func 42.3 9.4 0.00032 30.3 1.4 12 87-98 41-52 (104)
128 2zet_C Melanophilin; complex, 42.2 14 0.00047 31.2 2.6 33 61-93 67-100 (153)
129 3shb_A E3 ubiquitin-protein li 41.9 4.6 0.00016 30.3 -0.4 44 64-108 28-76 (77)
130 3ql9_A Transcriptional regulat 40.1 28 0.00096 28.6 4.1 74 27-108 26-110 (129)
131 3asl_A E3 ubiquitin-protein li 39.9 6.9 0.00024 28.6 0.3 44 64-108 20-68 (70)
132 2e6s_A E3 ubiquitin-protein li 39.9 6.5 0.00022 29.4 0.2 45 63-108 27-76 (77)
133 1wen_A Inhibitor of growth fam 39.7 25 0.00087 25.6 3.4 44 61-109 15-65 (71)
134 1wev_A Riken cDNA 1110020M19; 39.6 13 0.00045 28.2 1.9 51 61-111 15-74 (88)
135 3ask_A E3 ubiquitin-protein li 38.3 7.4 0.00025 35.1 0.3 45 63-108 175-224 (226)
136 2gmg_A Hypothetical protein PF 33.6 9.6 0.00033 30.5 0.2 26 83-113 72-97 (105)
137 2pv0_B DNA (cytosine-5)-methyl 32.0 52 0.0018 31.8 5.1 74 27-108 62-147 (386)
138 3mjh_B Early endosome antigen 30.2 6.6 0.00023 25.1 -1.0 16 61-76 4-19 (34)
139 2kwj_A Zinc finger protein DPF 29.3 25 0.00085 27.7 2.0 34 63-96 2-41 (114)
140 2kpi_A Uncharacterized protein 28.5 33 0.0011 24.0 2.3 31 58-88 6-38 (56)
141 2d8v_A Zinc finger FYVE domain 28.1 39 0.0013 24.8 2.6 32 60-96 6-38 (67)
142 1x4k_A Skeletal muscle LIM-pro 27.9 52 0.0018 22.8 3.4 42 62-113 5-46 (72)
143 1x61_A Thyroid receptor intera 26.9 71 0.0024 22.1 4.0 41 62-112 5-45 (72)
144 1wyh_A SLIM 2, skeletal muscle 26.2 53 0.0018 22.7 3.2 42 62-113 5-46 (72)
145 2vnf_A ING 4, P29ING4, inhibit 25.6 15 0.00052 25.8 0.1 43 61-108 9-58 (60)
146 1x4l_A Skeletal muscle LIM-pro 25.0 87 0.003 21.7 4.1 42 62-113 5-48 (72)
147 1wee_A PHD finger family prote 25.0 28 0.00096 25.1 1.5 48 61-109 15-66 (72)
148 1wd2_A Ariadne-1 protein homol 23.9 8.7 0.0003 27.3 -1.5 36 63-98 7-46 (60)
149 3c6w_A P28ING5, inhibitor of g 23.7 19 0.00063 25.4 0.3 43 61-108 8-57 (59)
150 1x63_A Skeletal muscle LIM-pro 23.6 80 0.0027 22.4 3.8 42 62-113 15-56 (82)
151 2cu8_A Cysteine-rich protein 2 23.0 53 0.0018 23.1 2.7 41 62-113 9-49 (76)
152 1wem_A Death associated transc 22.1 70 0.0024 23.1 3.2 45 63-109 17-70 (76)
153 1g47_A Pinch protein; LIM doma 21.9 61 0.0021 22.7 2.8 42 62-113 11-52 (77)
154 2jne_A Hypothetical protein YF 21.4 33 0.0011 27.1 1.2 41 62-111 32-72 (101)
155 3a1b_A DNA (cytosine-5)-methyl 21.2 58 0.002 27.7 2.9 43 61-107 78-132 (159)
156 2fiy_A Protein FDHE homolog; F 20.9 9.3 0.00032 35.9 -2.4 49 60-109 180-231 (309)
157 3o70_A PHD finger protein 13; 20.8 58 0.002 23.4 2.4 47 60-108 17-66 (68)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=122.36 Aligned_cols=80 Identities=25% Similarity=0.602 Sum_probs=68.8
Q ss_pred cccccCCCCCHHHHhhccceeecccC-CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCC
Q 048328 32 IWYINTIGLPQSVIDSIAVFKYKKDV-GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPI 110 (318)
Q Consensus 32 ~~~i~~~GL~~~~I~~Lp~~~~~~~~-~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i 110 (318)
.-.....|++++.|+.||.+.+.... ...++..|+||++.|.....++.+| |+|.||..||..|+..+.+||+||..+
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 33456679999999999999987654 3356678999999999888888898 999999999999999999999999987
Q ss_pred CC
Q 048328 111 LS 112 (318)
Q Consensus 111 ~~ 112 (318)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=118.04 Aligned_cols=70 Identities=34% Similarity=0.863 Sum_probs=61.7
Q ss_pred HHHHhhccceeecccCCCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 42 QSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 42 ~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.+.|+.||.++++......++..|+||++.|..+..++.+| |+|.||..||..|+..+.+||+||+.+..
T Consensus 3 ~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred HhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34568899999987766677889999999999888888898 99999999999999999999999998764
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=8.6e-14 Score=105.32 Aligned_cols=58 Identities=41% Similarity=0.940 Sum_probs=50.7
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCccC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~~ 117 (318)
..++..|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 356789999999999888888888 9999999999999999999999999987765443
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.8e-14 Score=104.00 Aligned_cols=55 Identities=42% Similarity=0.939 Sum_probs=48.9
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
+.++..|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 355789999999999888888888 9999999999999999999999999886543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=5.1e-14 Score=99.58 Aligned_cols=52 Identities=48% Similarity=1.245 Sum_probs=46.4
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.++..|+||++.|..++....++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4568999999999987777777679999999999999999999999998764
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=100.28 Aligned_cols=53 Identities=42% Similarity=0.980 Sum_probs=47.3
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.++..|+||++.|.....++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999998877788898 999999999999999999999999988654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.3e-13 Score=102.71 Aligned_cols=54 Identities=26% Similarity=0.853 Sum_probs=43.4
Q ss_pred CCCcccccccccccc-----------CCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQE-----------DESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~-----------~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.++..|+||++.|.. .+.++.++.|+|.||..||.+|+..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356789999998854 233445556999999999999999999999999987543
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.33 E-value=1.6e-12 Score=105.13 Aligned_cols=52 Identities=27% Similarity=0.629 Sum_probs=42.2
Q ss_pred CCccccccccccccCC---------------ceeecCCCCCcccHhhHHHHHh-----cCCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQEDE---------------SLRLLPKCNHAFHISCIDTWLR-----SHTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~~~---------------~~~~lP~CgH~FH~~CI~~Wl~-----~~~tCP~CR~~i~~~ 113 (318)
.+..|+||++.|..+. .+.+++ |+|.||..||..|+. .+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999997653 334676 999999999999994 467899999988654
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.32 E-value=9.9e-13 Score=97.26 Aligned_cols=55 Identities=24% Similarity=0.630 Sum_probs=46.5
Q ss_pred CCCccccccccccccC----CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.++..|+||++.|..+ ...+.++ |||.||..||.+|+..+.+||+||..+.....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4568999999998764 3446776 99999999999999999999999999876544
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=95.83 Aligned_cols=53 Identities=25% Similarity=0.618 Sum_probs=44.6
Q ss_pred CCCCccccccccccccC----CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 59 LIEGTDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
+.+...|+||++.|..+ ..++.++ |||.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35678999999999764 2346677 99999999999999999999999998753
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.7e-12 Score=95.92 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=46.5
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCccC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~~ 117 (318)
.+.++..|+||++.|..+ +.+++ |||.||..||..|+..+..||+||..+.......
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred hcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 345678999999999765 33346 9999999999999998999999999987665443
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.29 E-value=1.7e-12 Score=105.54 Aligned_cols=51 Identities=31% Similarity=0.702 Sum_probs=43.3
Q ss_pred CCCccccccccccccCC---------------ceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQEDE---------------SLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~---------------~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.++..|+||++.|..+. .++.++ |+|.||..||.+||..+.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 46789999999998541 245566 9999999999999999999999999864
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.28 E-value=2.8e-12 Score=90.41 Aligned_cols=51 Identities=29% Similarity=0.810 Sum_probs=43.2
Q ss_pred CCCccccccccccccC-CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQED-ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~-~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.++..|+||++.|... ...+.++ |+|.||..||..|+....+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3467899999998653 3456777 9999999999999999999999998864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=93.94 Aligned_cols=54 Identities=24% Similarity=0.643 Sum_probs=45.3
Q ss_pred CCccccccccccccC----CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 61 EGTDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 61 e~~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
++..|+||++.|..+ ..+..++ |||.||..||..|+..+.+||+||..+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 457899999999764 3446676 99999999999999999999999999876543
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=95.34 Aligned_cols=51 Identities=35% Similarity=0.982 Sum_probs=44.2
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
+.++..|+||++.+.. +.++ |+|.||..||..|+....+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3567899999999865 5677 9999999999999999999999999887554
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=95.97 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=44.5
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.++..|+||++.|..+ +.++ |+|.||..||..|+....+||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 4567899999998665 5667 99999999999999999999999999875543
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=92.96 Aligned_cols=54 Identities=22% Similarity=0.519 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC--CCCCCcccCCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRAPILSGA 114 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~--~tCP~CR~~i~~~~ 114 (318)
.+.++..|+||++.|..+ +.++.|||.||..||..|+... ..||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 345678999999999876 4455599999999999999865 68999999765443
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=94.25 Aligned_cols=55 Identities=29% Similarity=0.700 Sum_probs=45.7
Q ss_pred CCCCCccccccccccccCCc-eeecCCCCCcccHhhHHHHHhcC---CCCCCcccCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDES-LRLLPKCNHAFHISCIDTWLRSH---TNCPLCRAPILSG 113 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~-~~~lP~CgH~FH~~CI~~Wl~~~---~tCP~CR~~i~~~ 113 (318)
.+.+...|+||++.|..... .+.++ |||.||..||..|+... ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34567899999999987543 56777 99999999999999875 7899999987654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=9.2e-12 Score=91.52 Aligned_cols=49 Identities=39% Similarity=0.952 Sum_probs=42.5
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
++..|+||++.+..+ .+.++ |||.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999998754 46777 99999999999999999999999998753
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=90.11 Aligned_cols=52 Identities=23% Similarity=0.539 Sum_probs=43.1
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHh-cCCCCCCcccCCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRAPILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-~~~tCP~CR~~i~~~~ 114 (318)
+.++..|+||++.+..+. .++ |||.||..||..|+. ....||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 356789999999998763 356 999999999999994 5678999999886543
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=91.31 Aligned_cols=52 Identities=29% Similarity=0.685 Sum_probs=43.0
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHh---cCCCCCCcccCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR---SHTNCPLCRAPILSG 113 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~---~~~tCP~CR~~i~~~ 113 (318)
.+.++..|+||++.|..+ +.++ |||.||..||..|+. ....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 345678999999999765 5566 999999999999996 456899999988654
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=7.2e-12 Score=105.21 Aligned_cols=49 Identities=35% Similarity=0.856 Sum_probs=42.6
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
++..|+||++.|..+ +.+| |||.||..||..|+..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456899999999765 5677 999999999999999999999999988543
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=3.4e-11 Score=91.32 Aligned_cols=52 Identities=37% Similarity=0.772 Sum_probs=44.2
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc------CCCCCCcccCCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS------HTNCPLCRAPILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~------~~tCP~CR~~i~~~~ 114 (318)
+.++..|+||++.|..+ ..++ |+|.||..||..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 45678999999999876 4677 9999999999999987 678999999887553
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=2.1e-11 Score=92.08 Aligned_cols=52 Identities=21% Similarity=0.546 Sum_probs=44.3
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~ 114 (318)
+.++..|+||++.|..+ +.++ |||.||..||..|+.. +.+||+||..+....
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 45678999999999876 4566 9999999999999987 788999999886543
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=93.02 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.+...|+||++.|..+ ++++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999765 4577 9999999999999998999999999885
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.6e-11 Score=90.57 Aligned_cols=53 Identities=25% Similarity=0.663 Sum_probs=44.4
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc------CCCCCCcccCCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS------HTNCPLCRAPILSGA 114 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~------~~tCP~CR~~i~~~~ 114 (318)
.+.++..|+||++.|..+ +.++ |||.||..||..|+.. ...||+||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 345678999999999776 4466 9999999999999987 788999999987644
No 27
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=93.45 Aligned_cols=55 Identities=25% Similarity=0.727 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCceeecCCCC-----CcccHhhHHHHHhcC--CCCCCcccCCCCCCcc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCN-----HAFHISCIDTWLRSH--TNCPLCRAPILSGAFV 116 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~Cg-----H~FH~~CI~~Wl~~~--~tCP~CR~~i~~~~~~ 116 (318)
.++..|.||+++|.....+ ++| |+ |.||..||.+|+..+ .+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 4567899999999876665 578 86 999999999999775 4899999998765433
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.14 E-value=4.3e-12 Score=105.03 Aligned_cols=52 Identities=31% Similarity=0.671 Sum_probs=1.6
Q ss_pred CCCccccccccccccCC---------------ceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDE---------------SLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~---------------~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.++..|+||++.|..+. .+..++ |+|.||..||.+||..+.+||+||+++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 35689999999997532 222345 99999999999999999999999998753
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=92.59 Aligned_cols=54 Identities=24% Similarity=0.582 Sum_probs=44.5
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-------CCCCCCcccCCCCCCc
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-------HTNCPLCRAPILSGAF 115 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-------~~tCP~CR~~i~~~~~ 115 (318)
.+.++..|+||++.|..+ +.++ |||.||..||..|+.. ...||+||..+....+
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred hcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 345678999999999876 3466 9999999999999976 5689999999876543
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.13 E-value=9.4e-12 Score=99.14 Aligned_cols=52 Identities=33% Similarity=0.819 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCceee-cCCCCCcccHhhHHHHHhcC-CCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQEDESLRL-LPKCNHAFHISCIDTWLRSH-TNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~-lP~CgH~FH~~CI~~Wl~~~-~tCP~CR~~i~~~~~ 115 (318)
.++..|+||++.|..+ +. ++ |||.||..||..|+... ..||+||..+....+
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 4568999999999765 44 66 99999999999999887 699999999865443
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.4e-11 Score=85.05 Aligned_cols=45 Identities=33% Similarity=0.753 Sum_probs=38.0
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHh---cCCCCCCc
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR---SHTNCPLC 106 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~---~~~tCP~C 106 (318)
.+.++..|+||++.|..+ +.++ |||.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678999999999876 5567 999999999999998 45689998
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=90.94 Aligned_cols=51 Identities=22% Similarity=0.547 Sum_probs=42.3
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC--CCCCCcccCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRAPIL 111 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~--~tCP~CR~~i~ 111 (318)
.+.++..|+||++.|..+ +.++.|||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 446678999999999876 4555599999999999999753 58999999873
No 33
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=88.20 Aligned_cols=51 Identities=20% Similarity=0.540 Sum_probs=42.1
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC--CCCCCcccCCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH--TNCPLCRAPILSGA 114 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~--~tCP~CR~~i~~~~ 114 (318)
....|+||++.|..++ ..+.|+|.||..||.+||+++ .+||+||+.+....
T Consensus 14 ~i~~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3478999999998653 333599999999999999887 89999999886543
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=8.6e-11 Score=85.88 Aligned_cols=55 Identities=24% Similarity=0.616 Sum_probs=43.8
Q ss_pred CCcccccccc-ccccCCce-eecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCcc
Q 048328 61 EGTDCSVCLS-EFQEDESL-RLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFV 116 (318)
Q Consensus 61 e~~~C~ICle-~f~~~~~~-~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~ 116 (318)
++..|+||++ .|..+... ..++ |||.||..||..|+.. ...||+||..+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 3578999999 88777543 3466 9999999999999765 46799999998765543
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=3.9e-11 Score=94.81 Aligned_cols=50 Identities=24% Similarity=0.656 Sum_probs=42.1
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
+...|+||++.|..+ +..++ |||.||..||..|+.....||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 457899999999765 22336 999999999999999889999999987653
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=7.3e-11 Score=96.38 Aligned_cols=55 Identities=24% Similarity=0.630 Sum_probs=46.2
Q ss_pred CCCccccccccccccC----CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.++..|+||++.|..+ ...+.++ |||.||..||..|+..+.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3567999999999765 3446676 99999999999999999999999998866544
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.06 E-value=7.6e-11 Score=96.89 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=41.5
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC-CCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH-TNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~-~tCP~CR~~i~~ 112 (318)
.++..|+||++.|..+ +.++ |||.||..||..|+... ..||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3457899999999866 5567 99999999999999854 489999998865
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=6.6e-11 Score=95.00 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=43.1
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.++..|+||++.|..+ +.+++ |||.||..||..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4578999999999765 33346 999999999999999989999999987653
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=81.86 Aligned_cols=44 Identities=36% Similarity=0.917 Sum_probs=36.9
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHh---cCCCCCCc
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR---SHTNCPLC 106 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~---~~~tCP~C 106 (318)
+.++..|+||++.|..+ +.++ |||.||..||..|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999876 4466 999999999999954 46789998
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.6e-10 Score=92.62 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=41.7
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCC---CCCCcccCCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT---NCPLCRAPILSGA 114 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~---tCP~CR~~i~~~~ 114 (318)
+...|+||++.|..+ +.++ |||.||..||..|+.... .||+||..+....
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 457899999999776 3466 999999999999998653 8999999887553
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.01 E-value=1.6e-10 Score=99.50 Aligned_cols=50 Identities=34% Similarity=0.719 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~ 112 (318)
.+...|+||++.|..+ +.+++ |||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456899999999865 33346 9999999999999987 7789999998854
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=1.9e-10 Score=93.97 Aligned_cols=52 Identities=29% Similarity=0.631 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCC-CCCCcccCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRAPILSG 113 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~-tCP~CR~~i~~~ 113 (318)
.+.++..|+||++.|..+ +.++ |||.||..||..|+.... +||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 445678999999999776 5567 999999999999998754 999999988654
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.97 E-value=3.4e-10 Score=87.95 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~ 114 (318)
+.+...|+||++.|.++ +.++ |||.||..||..|+..+.+||+|+.++....
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 34678999999999887 5677 9999999999999998899999999876543
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.96 E-value=8.8e-10 Score=84.64 Aligned_cols=57 Identities=19% Similarity=0.459 Sum_probs=43.7
Q ss_pred CCCCccccccccccccCC-ceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCCcc
Q 048328 59 LIEGTDCSVCLSEFQEDE-SLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGAFV 116 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~-~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~~~ 116 (318)
+.++.+|+||++.+...+ .+..++ |||.||..|+..|+.. ...||+||+.+......
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 466789999999886432 222344 9999999999998854 56899999998776543
No 45
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.96 E-value=3.9e-10 Score=90.42 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=45.7
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
+.+...|+||++.|.+| +.++ |||.||..||..||..+.+||+|+.++....+
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred CcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 34578999999999888 5667 99999999999999988999999998876543
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=97.09 Aligned_cols=50 Identities=18% Similarity=0.460 Sum_probs=42.4
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCC-CCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~-tCP~CR~~i~~~ 113 (318)
.+...|+||++.|..+ +.++ |||.||..||..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3457899999999776 4577 999999999999998754 899999998765
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.93 E-value=5.9e-10 Score=89.05 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCccccccccccccCCceeecCCCC-CcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCN-HAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~Cg-H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.++..|+||++.|.+| +.++ || |.||..||..||..+.+||+|+.++....+
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 4578999999999887 5667 99 999999999999988899999998876543
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=3.6e-10 Score=92.23 Aligned_cols=55 Identities=24% Similarity=0.630 Sum_probs=45.3
Q ss_pred CCCccccccccccccC----CceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQED----ESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~----~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
.+...|+||++.|..+ ...+.++ |||.||..||.+|+....+||+||..+.....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 4567899999998764 2335666 99999999999999999999999999876543
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.92 E-value=1.2e-10 Score=94.29 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~ 112 (318)
.++..|+||++.|..+ +.++ |||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4567899999999876 5567 9999999999999976 6789999998753
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=4.2e-10 Score=91.25 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=42.5
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGA 114 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~ 114 (318)
++..|+||++.|..+ +.++ |||.||..||..|+.. ..+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 457899999999765 4466 9999999999999987 678999999886544
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=6.9e-10 Score=90.45 Aligned_cols=47 Identities=30% Similarity=0.671 Sum_probs=40.1
Q ss_pred CCCccccccccccccCCceeec-CCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLL-PKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~l-P~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.+...|+||++.|..+ +.+ + |||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 3468999999999876 445 6 999999999999987 789999998754
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.80 E-value=2.3e-09 Score=78.94 Aligned_cols=49 Identities=20% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCCccccccccccccCCcee-ecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLR-LLPKCNHA-FHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~-~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.++..|.||++.+.+. +. .+| |||. ||..|+..|+..+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3567899999987544 22 238 9999 899999999998899999999875
No 53
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=84.89 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=42.1
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC------CCCCC--cccC-CCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH------TNCPL--CRAP-ILSGA 114 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~------~tCP~--CR~~-i~~~~ 114 (318)
..++..|+||++.|.+| +.++.|||.||..||..||..+ .+||+ |+.. +....
T Consensus 4 ~~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp CSSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CCcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 35678999999999887 4453499999999999999764 48999 9876 54443
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.79 E-value=1.1e-09 Score=92.69 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=42.0
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCC-CCCCcccCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT-NCPLCRAPILS 112 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~-tCP~CR~~i~~ 112 (318)
+.++..|+||++.|..+ +.++ |||.||..||..|+.... .||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 35678999999999877 4566 999999999999998654 89999997643
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=2.6e-09 Score=76.32 Aligned_cols=47 Identities=32% Similarity=0.760 Sum_probs=39.1
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.+...|+||++.|..+ +.++ |||.||..||..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4567899999999876 5677 9999999999874 56899999987643
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=4.1e-09 Score=96.09 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSGA 114 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~~ 114 (318)
.+...|+||++.|.+| +++| |||.||..||..|+.. ..+||+|+.++....
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 4678899999999887 5677 9999999999999986 445999999886544
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=4.4e-09 Score=102.86 Aligned_cols=49 Identities=27% Similarity=0.742 Sum_probs=42.0
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHh-cCCCCCCcccCCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-SHTNCPLCRAPILSGA 114 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-~~~tCP~CR~~i~~~~ 114 (318)
...|+||++.+..+ +.+| |||.||..|+..|+. ...+||+||..+....
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 46899999998654 6677 999999999999998 6889999999887643
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=5.4e-09 Score=90.13 Aligned_cols=52 Identities=29% Similarity=0.636 Sum_probs=43.5
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC-CCCCCcccCCCCC
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH-TNCPLCRAPILSG 113 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~-~tCP~CR~~i~~~ 113 (318)
.+.+...|+||++.|..+ +.++ |||.||..||..|+... .+||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 446678999999999876 4566 99999999999999764 4999999987653
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.69 E-value=7.1e-09 Score=76.00 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=39.6
Q ss_pred CCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
.+..|.||++.+.+. .+..+| |||. ||..|+..|+.....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 356899999986543 122348 9998 999999999988889999999875
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=3e-09 Score=80.20 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=38.0
Q ss_pred CCCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.++..|+||++.+..+ +.+| |||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3457899999998654 5677 9999 999999998 789999998754
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.64 E-value=6.9e-09 Score=99.96 Aligned_cols=53 Identities=23% Similarity=0.654 Sum_probs=40.0
Q ss_pred CCCccccccccccccCCce----eecCCCCCcccHhhHHHHHhcC-----------CCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESL----RLLPKCNHAFHISCIDTWLRSH-----------TNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~----~~lP~CgH~FH~~CI~~Wl~~~-----------~tCP~CR~~i~~ 112 (318)
....+|+||++.+.....+ -..++|+|.||..||.+||++. .+||+||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3557899999998862211 1223699999999999999752 469999998764
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.60 E-value=1.8e-08 Score=89.03 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC-CCCCCcccCCCCCCc
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH-TNCPLCRAPILSGAF 115 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~-~tCP~CR~~i~~~~~ 115 (318)
.+.+...|+||++.|.+| +++| |||.||..||..|+... .+||+|+.++....+
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 445678999999999887 5667 99999999999999864 479999998865443
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=4.2e-08 Score=76.79 Aligned_cols=48 Identities=21% Similarity=0.672 Sum_probs=40.0
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhc--------CCCCCC--cccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS--------HTNCPL--CRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~--------~~tCP~--CR~~ 109 (318)
+..+|+||++.+..++.+.+.+ |||.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4578999999998876666666 9999999999999863 236999 9987
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.5e-08 Score=75.12 Aligned_cols=45 Identities=24% Similarity=0.613 Sum_probs=36.7
Q ss_pred CCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
++..|+||++.+..+ +.+| |||. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 356899999998665 5677 9999 99999964 47899999988653
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.2e-07 Score=69.15 Aligned_cols=46 Identities=30% Similarity=0.747 Sum_probs=37.7
Q ss_pred CCCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.++..|.||++.+.. ++.+| |||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 346789999998654 47888 9999 99999974 57899999988654
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=8.4e-08 Score=89.32 Aligned_cols=54 Identities=22% Similarity=0.472 Sum_probs=43.2
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC--CCCCC--cccCCCCCCc
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH--TNCPL--CRAPILSGAF 115 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~--~tCP~--CR~~i~~~~~ 115 (318)
......|+||++.|..| ++... |||.||..||..|+... ..||+ |+..+....+
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred CceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 35667899999999887 33344 99999999999999764 46999 9998765544
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=5.7e-08 Score=74.37 Aligned_cols=45 Identities=31% Similarity=0.654 Sum_probs=37.3
Q ss_pred CCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
++..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45689999998754 46778 9999 999999877 4899999988654
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.29 E-value=4.6e-07 Score=66.13 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=37.1
Q ss_pred CCccccccccccccCCceeecC-CCCC---cccHhhHHHHHhc--CCCCCCcccCCCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLP-KCNH---AFHISCIDTWLRS--HTNCPLCRAPILS 112 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP-~CgH---~FH~~CI~~Wl~~--~~tCP~CR~~i~~ 112 (318)
+...|.||++.... .+ ++| .|.| .||..||.+|+.. +.+||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45789999997433 23 577 3444 9999999999964 5789999988753
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.28 E-value=2.7e-07 Score=67.50 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=43.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCccC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFVA 117 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~~ 117 (318)
..|+||++.|.++ +.++.|||.|...||.+|+..+.+||+++.++...++.+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 5799999999876 455239999999999999998888999999887665543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.26 E-value=1.4e-07 Score=91.03 Aligned_cols=45 Identities=29% Similarity=0.722 Sum_probs=38.2
Q ss_pred CCCccccccccccccCCceeecCCCCCc-ccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHA-FHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~-FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
.++..|+||++.+..+ +.+| |||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567899999998654 6677 9999 999999988 789999998754
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.97 E-value=6.3e-06 Score=75.55 Aligned_cols=49 Identities=20% Similarity=0.569 Sum_probs=41.1
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCC--CCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHT--NCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~--tCP~CR~~i~~~ 113 (318)
...|.||.+.+..+ ..++.|+|.||..|+..|++.+. .||.|+..|...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 57899999998765 45556999999999999998754 899999988655
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.81 E-value=1.2e-05 Score=64.54 Aligned_cols=47 Identities=26% Similarity=0.565 Sum_probs=37.6
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhc-CCCCCCcccCCCCC
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-HTNCPLCRAPILSG 113 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-~~tCP~CR~~i~~~ 113 (318)
.|.+|--.+. ...+..| |+|+||.+|+..|.+. .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777766554 4568888 9999999999999854 68899999987643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.84 E-value=0.014 Score=46.24 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=42.6
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCCCccCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSGAFVAQ 118 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~~~~ 118 (318)
+..-..|-.||-... .++.. ..|.+|..|+...|.....||+|+.+++.+-....
T Consensus 25 ~~G~~nCKsCWf~~k---~LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK---GLVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CSCCCCCCSSCSCCS---SEEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred ccCcccChhhccccC---Ceeee--cchhhHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 345578999998764 33332 57999999999999999999999999887654443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.90 E-value=0.029 Score=43.57 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=25.3
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
++..|.||++.+..+....-+. |+|.||..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 4578999997643332333365 9999999999984
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.75 E-value=0.097 Score=38.49 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=34.3
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~ 109 (318)
..+..|.||.+. ..++..-.|...||..|+...|... =.||.|...
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456789999863 3355555799999999998887653 269999764
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.59 E-value=0.52 Score=36.56 Aligned_cols=36 Identities=19% Similarity=0.494 Sum_probs=23.9
Q ss_pred CCCCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
...+..|.||-.. ...+...-. .|+-+||..|+.+.
T Consensus 12 ~~~D~~C~VC~~~-t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-cccceeccc-cccccccHhhcccc
Confidence 3467899999632 222222111 49999999999986
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.82 E-value=0.72 Score=32.98 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=32.4
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc----CCCCCCccc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRA 108 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~~tCP~CR~ 108 (318)
..+..|.||... ..+.....|...||..|+..-+.. .-.||.|..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999873 345555579999999999875433 235999965
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.33 E-value=0.25 Score=35.44 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=34.8
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHh-----cCCCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-----SHTNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-----~~~tCP~CR~~ 109 (318)
.++..|+||...+......+..-.|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356789999988755455555556999999999853221 24569999753
No 79
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.97 E-value=0.56 Score=33.85 Aligned_cols=43 Identities=23% Similarity=0.535 Sum_probs=31.1
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLC 106 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~C 106 (318)
..|..|...|... .....++|++.||.+|=.---..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999988533 235577899999999954433445679988
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.78 E-value=0.47 Score=40.91 Aligned_cols=45 Identities=31% Similarity=0.597 Sum_probs=32.6
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~ 109 (318)
.+..|.||.+. + .+.....|...||..|+.+.+... -.||.|+..
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 35679999854 2 355556799999999997766442 359999764
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=79.68 E-value=1.1 Score=48.47 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCceeecCCCC-CcccHhhHHHHHhcCCCCCCcccCCCCCCc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCN-HAFHISCIDTWLRSHTNCPLCRAPILSGAF 115 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~Cg-H~FH~~CI~~Wl~~~~tCP~CR~~i~~~~~ 115 (318)
-+...|||-++.+.+| +++| .| +.|-..+|.+|+..+.+||+=|.++.....
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 3556799999999888 6677 76 689999999999999999999998875543
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=79.19 E-value=0.89 Score=39.76 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=34.8
Q ss_pred CccccccccccccCCc---eeecCCCCCcccHhhHHH------HHh-----cCCCCCCcccC
Q 048328 62 GTDCSVCLSEFQEDES---LRLLPKCNHAFHISCIDT------WLR-----SHTNCPLCRAP 109 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~---~~~lP~CgH~FH~~CI~~------Wl~-----~~~tCP~CR~~ 109 (318)
+..|+||...+..++. .+..-.|..-||..|+.- -+. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 3579999998877653 566667999999999732 111 15689999865
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.81 E-value=0.54 Score=41.36 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=33.1
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~ 109 (318)
.+..|.+|... ..+..+..|...||..|+.+.+... -.||.|+..
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 45679999854 2355666799999999998766442 359999764
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.66 E-value=0.96 Score=32.32 Aligned_cols=46 Identities=28% Similarity=0.602 Sum_probs=31.5
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc----CCCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~~tCP~CR~~ 109 (318)
..+..|.||.+. ..+.....|...||..|+..-+.. .-.||.|...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345679999863 234444469999999999864433 2259999764
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.03 E-value=1.4 Score=29.90 Aligned_cols=44 Identities=34% Similarity=0.776 Sum_probs=29.3
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCccc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRA 108 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~ 108 (318)
.|.||...-.. ..++....|...||..|+.+=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888865322 3445555799999999997544332 24999864
No 86
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.91 E-value=1 Score=43.59 Aligned_cols=50 Identities=14% Similarity=0.352 Sum_probs=32.0
Q ss_pred ccccccccccccCCceeecCCCCCcccHhh--HHHHHhc--CCCCCCcccCCCCCCc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISC--IDTWLRS--HTNCPLCRAPILSGAF 115 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~C--I~~Wl~~--~~tCP~CR~~i~~~~~ 115 (318)
..|+|-+..|..| ++... |.|.-|.+- +...... .-.||+|...+....+
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 5699888888766 55554 999855443 2222222 3469999987765543
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.33 E-value=3.2 Score=32.18 Aligned_cols=46 Identities=28% Similarity=0.598 Sum_probs=32.9
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~ 109 (318)
..+..|.||... + .+.....|.-.||..|+.+=+... -.||.|...
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446789999974 2 345555799999999997755442 259999754
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=73.29 E-value=1.1 Score=33.02 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc----CCCCCCcccCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRAPI 110 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~~tCP~CR~~i 110 (318)
.+...|.||..... +..++..-.|.-.||..|+..-... .-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34567999987643 4445555579999999999754432 34699997654
No 89
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.29 E-value=12 Score=29.13 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=36.1
Q ss_pred CccccccccccccC---CceeecCCCCCcccHhhHHHHH-hcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQED---ESLRLLPKCNHAFHISCIDTWL-RSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~~~---~~~~~lP~CgH~FH~~CI~~Wl-~~~~tCP~CR~~i~~ 112 (318)
...|.||-+.+... +..+..-.|+--.|..|..--. ..++.||.|++.+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 46899999986432 2333333588889999987544 447889999998753
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.65 E-value=1.3 Score=35.34 Aligned_cols=84 Identities=20% Similarity=0.468 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcccccCCCCCHHHHhhccceeecccCCCCCCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 17 EDFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 17 ~~~~~~~~~~~~~~p~~~i~~~GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
+..+.-+.....+|+.-+ ++.+.+...++...+.= .+=..|.||...-.....+.....|...||..|+.+-
T Consensus 24 ~~Ll~C~~C~~~~H~~Cl----~~~~~~~~~~~~~~W~C----~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~ 95 (112)
T 3v43_A 24 EELISCADCGNSGHPSCL----KFSPELTVRVKALRWQC----IECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPP 95 (112)
T ss_dssp CCCEECTTTCCEECHHHH----TCCHHHHHHHHTSCCCC----TTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSC
T ss_pred hhceEhhhcCCCCCCchh----cCCHHHHHHhhcccccc----ccCCccccccCcCCCccceEEcCCCCCeeecccCCCC
Confidence 345556667677787543 44455555544322211 1223688888653333445555579999999999765
Q ss_pred HhcC----CCCCCccc
Q 048328 97 LRSH----TNCPLCRA 108 (318)
Q Consensus 97 l~~~----~tCP~CR~ 108 (318)
|... =.||.|+.
T Consensus 96 l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 96 LTRMPKGMWICQICRP 111 (112)
T ss_dssp CSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCeECCCCCC
Confidence 5432 25998864
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.53 E-value=0.59 Score=32.74 Aligned_cols=44 Identities=30% Similarity=0.685 Sum_probs=30.1
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCR 107 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR 107 (318)
..+..|.||... ..++....|...||..|+.+-+... -.||.|.
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456789999874 2344555799999999997644332 2377774
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.24 E-value=1 Score=32.57 Aligned_cols=46 Identities=28% Similarity=0.630 Sum_probs=32.2
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc----CCCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~~tCP~CR~~ 109 (318)
..+..|.||.+. ..++....|...||..|+.+-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356789999874 234555579999999999864433 2249999653
No 93
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.46 E-value=1.5 Score=38.21 Aligned_cols=44 Identities=30% Similarity=0.670 Sum_probs=30.6
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhc----CCCCCCcccC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----HTNCPLCRAP 109 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~~tCP~CR~~ 109 (318)
+..|.+|... + .+..+..|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999864 2 34444568999999999764433 2259999764
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=64.82 E-value=1.1 Score=31.72 Aligned_cols=45 Identities=29% Similarity=0.699 Sum_probs=31.4
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~ 109 (318)
.+..|.||... ..++....|...||..|+.+-+... -.||.|...
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999874 2345555799999999998644332 248888654
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.27 E-value=5.1 Score=29.02 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=26.3
Q ss_pred CCccccccccccccCCceeecC-CCCCcccHhhHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLP-KCNHAFHISCID 94 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP-~CgH~FH~~CI~ 94 (318)
....|++|...+......+..- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3467999999887766666665 699999999973
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.25 E-value=7.7 Score=29.82 Aligned_cols=37 Identities=16% Similarity=0.468 Sum_probs=27.9
Q ss_pred CccccccccccccCCceeecC-CCCCcccHhhHHHHHhc
Q 048328 62 GTDCSVCLSEFQEDESLRLLP-KCNHAFHISCIDTWLRS 99 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP-~CgH~FH~~CI~~Wl~~ 99 (318)
...|.+|.+.+++..-+ ..| .=.|.||..|-+..+++
T Consensus 15 ~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 46899999999875433 333 23699999999988865
No 97
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.92 E-value=4.3 Score=35.79 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=25.8
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT 95 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~ 95 (318)
.++..|.+|...|..-..--.+-.||++||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 456799999999875432233346999999998654
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.68 E-value=6 Score=29.37 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=31.9
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHh-----cCCCCCCcccCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-----SHTNCPLCRAPI 110 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-----~~~tCP~CR~~i 110 (318)
...| ||...+......+..-.|..-||..|+.--.. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 99887754444555556999999999852111 345799998643
No 99
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=63.66 E-value=7 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=29.6
Q ss_pred cccccccccccCCceeecC-CCCCcccHhhHHHH----HhcCCCCCCcc
Q 048328 64 DCSVCLSEFQEDESLRLLP-KCNHAFHISCIDTW----LRSHTNCPLCR 107 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP-~CgH~FH~~CI~~W----l~~~~tCP~CR 107 (318)
.|.||...+......+..- .|.--||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888776555555554 58889999997421 12456799885
No 100
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.09 E-value=5 Score=28.52 Aligned_cols=51 Identities=18% Similarity=0.486 Sum_probs=34.8
Q ss_pred CCCccccccccccc-cCCceeecCCCCCcccHhhHHHHHh-------cCCCCCCcccCC
Q 048328 60 IEGTDCSVCLSEFQ-EDESLRLLPKCNHAFHISCIDTWLR-------SHTNCPLCRAPI 110 (318)
Q Consensus 60 ~e~~~C~ICle~f~-~~~~~~~lP~CgH~FH~~CI~~Wl~-------~~~tCP~CR~~i 110 (318)
.++..|.||..... ....++....|.-.||..|+..-+. ..-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45678999997643 3345566667999999999875331 123588886543
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.78 E-value=6.1 Score=29.62 Aligned_cols=35 Identities=29% Similarity=0.587 Sum_probs=24.9
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT 95 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~ 95 (318)
+...|.+|...|..-..--..-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44679999999975432223335999999999754
No 102
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=58.85 E-value=2.9 Score=32.88 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=30.6
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhc----CCCCCCcc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----HTNCPLCR 107 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~~tCP~CR 107 (318)
..+..|.||.+.-... .++....|+..||..|+..++.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567899998763322 23444569999999999876532 22466653
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.49 E-value=2.2 Score=36.11 Aligned_cols=48 Identities=19% Similarity=0.466 Sum_probs=32.7
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHH-----hcCCCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL-----RSHTNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl-----~~~~tCP~CR~~ 109 (318)
+...| ||..........+..-.|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9988765444455555799999999985211 124579999753
No 104
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.26 E-value=8.2 Score=37.14 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=31.9
Q ss_pred ccccccccccccCCceeecCCCCCcccHh--hHHHHHhc--CCCCCCcccCCCCCCc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHIS--CIDTWLRS--HTNCPLCRAPILSGAF 115 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~--CI~~Wl~~--~~tCP~CR~~i~~~~~ 115 (318)
..|+|-+..+..| ++... |.|.-|.+ -+..+... .-.||+|...+....+
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 4699888888766 55554 99984443 33332222 3469999988765543
No 105
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.23 E-value=7.8 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=23.6
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHH
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCID 94 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~ 94 (318)
+..|.+|...|..-..--..-.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 458999999987543222333599999999964
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=56.80 E-value=16 Score=28.80 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCcccccccccc-----ccCCceeecCCCCCcccHhhHH
Q 048328 61 EGTDCSVCLSEF-----QEDESLRLLPKCNHAFHISCID 94 (318)
Q Consensus 61 e~~~C~ICle~f-----~~~~~~~~lP~CgH~FH~~CI~ 94 (318)
....|.+|+..- ..++.++....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 356899998752 2234555556799999999995
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.79 E-value=1.1 Score=34.85 Aligned_cols=49 Identities=29% Similarity=0.577 Sum_probs=33.7
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHhcC----CCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSH----TNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~----~tCP~CR~~ 109 (318)
.++..|.||...-. ...++..-.|...||..|+.+-|... =.||.|...
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45568999987643 23455555799999999997544332 249999754
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.66 E-value=7.7 Score=31.52 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=24.7
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDT 95 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~ 95 (318)
+...|.+|...|..-..--..-.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34679999999875432223336999999999643
No 109
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.37 E-value=7.2 Score=34.66 Aligned_cols=37 Identities=16% Similarity=0.459 Sum_probs=26.5
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
.++..|.+|...|..-..--.+..||++||..|...+
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4557899999998754332334469999999997543
No 110
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=55.83 E-value=6.2 Score=32.67 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCCccccccccccc-cCCceeecCCCCCcccHhhHH
Q 048328 60 IEGTDCSVCLSEFQ-EDESLRLLPKCNHAFHISCID 94 (318)
Q Consensus 60 ~e~~~C~ICle~f~-~~~~~~~lP~CgH~FH~~CI~ 94 (318)
..+..|.+|...|. ....-.....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999984 323345555799999998854
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.00 E-value=9.1 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=25.7
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
+...|.+|...|..-..-.....||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999998754332333469999999997654
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=54.39 E-value=12 Score=31.25 Aligned_cols=44 Identities=25% Similarity=0.482 Sum_probs=31.5
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHh-----------cCCCCCCccc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-----------SHTNCPLCRA 108 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-----------~~~tCP~CR~ 108 (318)
.+..|.||.+- -.+...-.|-..||..||.+-+. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45789999875 23444456999999999997652 1235999974
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=54.09 E-value=9.7 Score=29.06 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHH-------hcCCCCCCcccCC
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL-------RSHTNCPLCRAPI 110 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl-------~~~~tCP~CR~~i 110 (318)
.+...|.+|...|..-..--..-.||++||..|....+ .....|-.|...+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 34568999999987543322333599999999975432 1124476675544
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.96 E-value=11 Score=28.30 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
+...|.+|...|..-..--..-.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999998754322233359999999997543
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=52.15 E-value=7.1 Score=30.79 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=33.4
Q ss_pred CccccccccccccCCceeecC-CCCCcccHhhHHHH------Hh----cCCCCCCcccC
Q 048328 62 GTDCSVCLSEFQEDESLRLLP-KCNHAFHISCIDTW------LR----SHTNCPLCRAP 109 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP-~CgH~FH~~CI~~W------l~----~~~tCP~CR~~ 109 (318)
...|.||...+......+..- .|.--||..|+.-- +. ..-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 357999999876655555554 58999999997411 10 34579999764
No 116
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.72 E-value=2 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.864 Sum_probs=15.3
Q ss_pred eecCCCCCcccHhhHHHHH
Q 048328 79 RLLPKCNHAFHISCIDTWL 97 (318)
Q Consensus 79 ~~lP~CgH~FH~~CI~~Wl 97 (318)
+..|.|++.||..|-..|=
T Consensus 44 v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp EECTTTCCEECSSSCSBCC
T ss_pred eEeCCCCCccccccCCchh
Confidence 5566799999999988873
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.18 E-value=4.1 Score=31.70 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=29.4
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhc---CCCCCCccc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS---HTNCPLCRA 108 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~---~~tCP~CR~ 108 (318)
..| ||......+ .++..-.|.-.||..|+..-+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 887665443 44555579999999998653222 246999964
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.88 E-value=12 Score=29.82 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=32.2
Q ss_pred CCCCccccccccccccCCceeecC--CCCCcccHhhHHHHHhcC----CCCCCcccCCCCC
Q 048328 59 LIEGTDCSVCLSEFQEDESLRLLP--KCNHAFHISCIDTWLRSH----TNCPLCRAPILSG 113 (318)
Q Consensus 59 l~e~~~C~ICle~f~~~~~~~~lP--~CgH~FH~~CI~~Wl~~~----~tCP~CR~~i~~~ 113 (318)
...+..|.+|.+. + .++..- .|...||..|+. |... -.||.|...+...
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3567889999843 2 344443 488999999997 4332 2488877665544
No 119
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.18 E-value=2 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=13.3
Q ss_pred CCCCcccHhhHHHHH
Q 048328 83 KCNHAFHISCIDTWL 97 (318)
Q Consensus 83 ~CgH~FH~~CI~~Wl 97 (318)
.|++.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 699999999998883
No 120
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=50.14 E-value=1.9 Score=35.20 Aligned_cols=48 Identities=19% Similarity=0.459 Sum_probs=30.6
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCccc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRA 108 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~ 108 (318)
+...|..|...|..-..--..-.||.+||..|..........|-.|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 346899999998653322233369999999997766555666777754
No 121
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=49.25 E-value=3.6 Score=39.32 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHHh-------cCCCCCCcccCC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR-------SHTNCPLCRAPI 110 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~-------~~~tCP~CR~~i 110 (318)
+...|.+|...|..-..-..+..||++||..|...++. ....|-.|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34679999998864322222335999999999876542 134577775543
No 122
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.23 E-value=13 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=22.8
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhH
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCI 93 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI 93 (318)
+...|.+|...|..-..--..-.||.+||..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 346899999998653222223359999999884
No 123
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.02 E-value=12 Score=28.58 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCCcccccccccc-ccCCceeecCCCCCcccHhhHHHHHhc--CCCCCCcccCCC
Q 048328 60 IEGTDCSVCLSEF-QEDESLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRAPIL 111 (318)
Q Consensus 60 ~e~~~C~ICle~f-~~~~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~~i~ 111 (318)
.++..|.||...- .....++....|.-.||..|+..-+.- .-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4567899999753 233355666679999999999753211 235999976543
No 124
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.88 E-value=17 Score=26.65 Aligned_cols=49 Identities=24% Similarity=0.437 Sum_probs=32.7
Q ss_pred CCCcccccccccc-ccCCceeecCCCCCcccHhhHHHHHhc--CCCCCCccc
Q 048328 60 IEGTDCSVCLSEF-QEDESLRLLPKCNHAFHISCIDTWLRS--HTNCPLCRA 108 (318)
Q Consensus 60 ~e~~~C~ICle~f-~~~~~~~~lP~CgH~FH~~CI~~Wl~~--~~tCP~CR~ 108 (318)
.++..|.||...- .....++..-.|.-.||..|+..-..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998753 334456666679999999998743211 224777754
No 125
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.77 E-value=15 Score=28.34 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=27.4
Q ss_pred CCccccccccccccCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~--Cg-H~FH~~CI~~Wl~~----~~tCP~CR~~ 109 (318)
+...| ||..... + .++..-. |. ..||..|+. |.. .-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44567 9988643 3 2333334 55 579999986 322 3469999764
No 126
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=42.43 E-value=9.3 Score=30.36 Aligned_cols=13 Identities=31% Similarity=1.002 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhc
Q 048328 87 AFHISCIDTWLRS 99 (318)
Q Consensus 87 ~FH~~CI~~Wl~~ 99 (318)
-||..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999963
No 127
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=42.32 E-value=9.4 Score=30.29 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=10.8
Q ss_pred cccHhhHHHHHh
Q 048328 87 AFHISCIDTWLR 98 (318)
Q Consensus 87 ~FH~~CI~~Wl~ 98 (318)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999996
No 128
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.25 E-value=14 Score=31.23 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=24.0
Q ss_pred CCccccccccccccC-CceeecCCCCCcccHhhH
Q 048328 61 EGTDCSVCLSEFQED-ESLRLLPKCNHAFHISCI 93 (318)
Q Consensus 61 e~~~C~ICle~f~~~-~~~~~lP~CgH~FH~~CI 93 (318)
.+..|.+|...|..- ........|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999986432 123445569999999996
No 129
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.90 E-value=4.6 Score=30.30 Aligned_cols=44 Identities=34% Similarity=0.747 Sum_probs=27.6
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhc----C-CCCCCccc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS----H-TNCPLCRA 108 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~----~-~tCP~CR~ 108 (318)
.|.||...- .+..+...-.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455665442 22345555579999999999865543 1 35888864
No 130
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=40.12 E-value=28 Score=28.61 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=41.9
Q ss_pred CCCCCcccccCCCCCHHHHhhccceeecccCCCCCCccccccccccccCCceeecCCCCCcccHhhHHHHH-----hc--
Q 048328 27 VLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL-----RS-- 99 (318)
Q Consensus 27 ~~~~p~~~i~~~GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl-----~~-- 99 (318)
+..||-+.+ ++=+.=-+.+..-.+..+.. ..+..|.||.+- -.+.....|-..||..||.+-+ ..
T Consensus 26 ~~~HPll~v---~~C~~C~~~y~~~~~~~d~D-g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~ 97 (129)
T 3ql9_A 26 IYRHPSLQV---LICKNCFKYYMSDDISRDSD-GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIM 97 (129)
T ss_dssp EEECTTTCC---EEEHHHHHHHHHSCCCBCTT-SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHT
T ss_pred cccCCCcCc---eeCHhHHhhhhccccccCCC-CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhc
Confidence 456776553 44333223222222222221 345679999875 2344445699999999999752 11
Q ss_pred ----CCCCCCccc
Q 048328 100 ----HTNCPLCRA 108 (318)
Q Consensus 100 ----~~tCP~CR~ 108 (318)
.=.|++|+.
T Consensus 98 ~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 98 DENNQWYCYICHP 110 (129)
T ss_dssp CTTSCCCCTTTCC
T ss_pred cCCCCeEcCCcCC
Confidence 236999954
No 131
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=39.95 E-value=6.9 Score=28.59 Aligned_cols=44 Identities=34% Similarity=0.733 Sum_probs=27.8
Q ss_pred cccccccccccCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCccc
Q 048328 64 DCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRA 108 (318)
Q Consensus 64 ~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-----~~tCP~CR~ 108 (318)
.|.||...-. +..++..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667765322 2344555569999999999854433 225888864
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.88 E-value=6.5 Score=29.40 Aligned_cols=45 Identities=33% Similarity=0.696 Sum_probs=29.5
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCccc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRA 108 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-----~~tCP~CR~ 108 (318)
..|.||...- .+..++..-.|...||..|+.+-|.. .=.||.|..
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788888642 23345555579999999999854432 125888854
No 133
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=39.74 E-value=25 Score=25.62 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=27.7
Q ss_pred CCccccccccccccCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~--Cg-H~FH~~CI~~Wl~~----~~tCP~CR~~ 109 (318)
+...| ||..... + .++..-. |. ..||..|+. |.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 44567 8987542 3 2444334 55 689999996 322 3369999764
No 134
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.62 E-value=13 Score=28.21 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=35.1
Q ss_pred CCcccccccccccc-CCceeecCCCCCcccHhhHHHHHhc--------CCCCCCcccCCC
Q 048328 61 EGTDCSVCLSEFQE-DESLRLLPKCNHAFHISCIDTWLRS--------HTNCPLCRAPIL 111 (318)
Q Consensus 61 e~~~C~ICle~f~~-~~~~~~lP~CgH~FH~~CI~~Wl~~--------~~tCP~CR~~i~ 111 (318)
.+..|.||...-.. ...++..-.|...||..|+.+-|.. .-.|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35689999975332 2455666679999999999865431 235999976543
No 135
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=38.34 E-value=7.4 Score=35.11 Aligned_cols=45 Identities=33% Similarity=0.713 Sum_probs=26.6
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHHHhc-----CCCCCCccc
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRS-----HTNCPLCRA 108 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~-----~~tCP~CR~ 108 (318)
..|.+|...-. +..+...-.|...||..|+.+=|.. .=.||.|..
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35778875322 2344555579999999999865533 125999964
No 136
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.58 E-value=9.6 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.682 Sum_probs=17.0
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 83 KCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 83 ~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
.||+.|. .-+.....||.|+......
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 5999981 1122346799999876554
No 137
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=31.95 E-value=52 Score=31.84 Aligned_cols=74 Identities=23% Similarity=0.441 Sum_probs=44.8
Q ss_pred CCCCCcccccCCCCCHHHHhhccceeecccCCCCCCccccccccccccCCceeecC--CCCCcccHhhHHHHHhc-----
Q 048328 27 VLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLP--KCNHAFHISCIDTWLRS----- 99 (318)
Q Consensus 27 ~~~~p~~~i~~~GL~~~~I~~Lp~~~~~~~~~l~e~~~C~ICle~f~~~~~~~~lP--~CgH~FH~~CI~~Wl~~----- 99 (318)
+..||-+.+ ++-+.=-+.+-.-.+..+.. ..+..|.+|-+- ..+..+. .|...||..||..++-.
T Consensus 62 ~~~HPl~~v---~lC~~Ck~~y~~~~f~~D~D-G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~ 133 (386)
T 2pv0_B 62 HTQHPLFEG---GICAPCKDKFLDALFLYDDD-GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGK 133 (386)
T ss_dssp CSBCSSBSS---BCCHHHHHHHHTTTTCBCSS-SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHH
T ss_pred cccCCCcCc---chhhHHHHHHhccCcccCCC-CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHH
Confidence 346776643 66554444333333333221 335689999874 3344544 69999999999998722
Q ss_pred -----CCCCCCccc
Q 048328 100 -----HTNCPLCRA 108 (318)
Q Consensus 100 -----~~tCP~CR~ 108 (318)
.=.|=+|.-
T Consensus 134 i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 134 VHAMSNWVCYLCLP 147 (386)
T ss_dssp HHHCSSCCCTTTSS
T ss_pred hhccCCceEEEcCC
Confidence 235888854
No 138
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.19 E-value=6.6 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=11.3
Q ss_pred CCccccccccccccCC
Q 048328 61 EGTDCSVCLSEFQEDE 76 (318)
Q Consensus 61 e~~~C~ICle~f~~~~ 76 (318)
+...||||+..|...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4567888888776543
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.28 E-value=25 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=23.7
Q ss_pred ccccccccccc------cCCceeecCCCCCcccHhhHHHH
Q 048328 63 TDCSVCLSEFQ------EDESLRLLPKCNHAFHISCIDTW 96 (318)
Q Consensus 63 ~~C~ICle~f~------~~~~~~~lP~CgH~FH~~CI~~W 96 (318)
..|.||+..-. .+..++....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987531 12345555569999999998754
No 140
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.50 E-value=33 Score=23.98 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=17.9
Q ss_pred CCCCCccccccccccccCCceeecC--CCCCcc
Q 048328 58 GLIEGTDCSVCLSEFQEDESLRLLP--KCNHAF 88 (318)
Q Consensus 58 ~l~e~~~C~ICle~f~~~~~~~~lP--~CgH~F 88 (318)
.+.+-..|++|...+.........+ .|++.|
T Consensus 6 ~lL~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 6 GLLEILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCTTSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred HHHhheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 3456678999998765433333333 355544
No 141
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.15 E-value=39 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCccccccccccccCCceeecCCC-CCcccHhhHHHH
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKC-NHAFHISCIDTW 96 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~C-gH~FH~~CI~~W 96 (318)
.+..-|.||.++ ..++-+. | +-.||..|....
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 345679999987 3456564 9 789999997664
No 142
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.90 E-value=52 Score=22.79 Aligned_cols=42 Identities=19% Similarity=0.470 Sum_probs=28.4
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|+.|-..+...+.++.. -+..||..|+ .|-.|...+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 35789998887764333222 5678888774 688888877554
No 143
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.87 E-value=71 Score=22.07 Aligned_cols=41 Identities=24% Similarity=0.629 Sum_probs=25.1
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILS 112 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~ 112 (318)
...|+.|-..+......+. . -+..||..|+ .|-.|...+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGCF--------VCSTCRAQLRG 45 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccCC--------cccccCCcCCc
Confidence 3578888876654322222 1 5677887763 57788777643
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.19 E-value=53 Score=22.73 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=28.4
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|+.|-..+.....+ +.. -+..||..|+ .|-.|..++...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEY-GGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECS-TTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccE-EEE-CccccCcccC--------eECCCCCcCCCC
Confidence 35799998887754333 222 6778888774 688888877544
No 145
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=25.55 E-value=15 Score=25.85 Aligned_cols=43 Identities=28% Similarity=0.617 Sum_probs=25.9
Q ss_pred CCccccccccccccCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCccc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRA 108 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~--Cg-H~FH~~CI~~Wl~~----~~tCP~CR~ 108 (318)
+...| ||..... + .++..-. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 8987532 3 3444444 54 689999997 332 235888854
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.98 E-value=87 Score=21.66 Aligned_cols=42 Identities=17% Similarity=0.475 Sum_probs=28.7
Q ss_pred Ccccccccccccc--CCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQE--DESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~--~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|+.|-..+.. ...++ . .-+..||..|+ .|-.|...+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~-a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-S-FEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-E-CSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceE-E-ECCcccCcccC--------EeccCCCcCCCC
Confidence 4579999988764 22222 2 26788998874 688998877644
No 147
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.96 E-value=28 Score=25.11 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCccccccccccccCCceeecCCCCCcccHhhHHHHH----hcCCCCCCcccC
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWL----RSHTNCPLCRAP 109 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl----~~~~tCP~CR~~ 109 (318)
+...| ||......+...+..-.|..-||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7987755554455555699999999985321 124569999653
No 148
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.90 E-value=8.7 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.631 Sum_probs=21.4
Q ss_pred ccccccccccccCCcee--ecCC--CCCcccHhhHHHHHh
Q 048328 63 TDCSVCLSEFQEDESLR--LLPK--CNHAFHISCIDTWLR 98 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~--~lP~--CgH~FH~~CI~~Wl~ 98 (318)
-.||-|.-.++...... .... |++.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888877766543221 1112 777787777777753
No 149
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.74 E-value=19 Score=25.36 Aligned_cols=43 Identities=30% Similarity=0.625 Sum_probs=26.6
Q ss_pred CCccccccccccccCCceeecCC--CC-CcccHhhHHHHHhc----CCCCCCccc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLPK--CN-HAFHISCIDTWLRS----HTNCPLCRA 108 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP~--Cg-H~FH~~CI~~Wl~~----~~tCP~CR~ 108 (318)
+...| ||..... + .++..-. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 8987542 3 3444444 65 689999986 322 235888854
No 150
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.65 E-value=80 Score=22.41 Aligned_cols=42 Identities=19% Similarity=0.515 Sum_probs=29.3
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|+.|-..+...+.++.. -+..||..|+ .|-.|..++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 35799999888755443322 5778888774 688898877654
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=53 Score=23.15 Aligned_cols=41 Identities=20% Similarity=0.549 Sum_probs=29.8
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|+.|-..+...+.+. . -+..||..|+ .|..|..++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCCC--------CCCCCCCccCCC
Confidence 468999999887555443 2 5778888774 689998887654
No 152
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.13 E-value=70 Score=23.06 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=29.9
Q ss_pred ccccccccccccCCceeecCCCCCcccHhhHHHH------H---hcCCCCCCcccC
Q 048328 63 TDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTW------L---RSHTNCPLCRAP 109 (318)
Q Consensus 63 ~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~W------l---~~~~tCP~CR~~ 109 (318)
..| ||...... ...+..-.|..-||..|+.-- + .....||.|+..
T Consensus 17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 89887643 334445569999999998411 1 246689999754
No 153
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.93 E-value=61 Score=22.72 Aligned_cols=42 Identities=21% Similarity=0.520 Sum_probs=29.0
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPILSG 113 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~~~ 113 (318)
...|+.|-..+...+.++.. -+..||..|+ .|-.|..++...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 46899999988654443222 5678888774 688888877554
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.36 E-value=33 Score=27.11 Aligned_cols=41 Identities=27% Similarity=0.581 Sum_probs=24.7
Q ss_pred CccccccccccccCCceeecCCCCCcccHhhHHHHHhcCCCCCCcccCCC
Q 048328 62 GTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAPIL 111 (318)
Q Consensus 62 ~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~i~ 111 (318)
+..||+|..++... =++.+|..|-.. +.....||-|..++.
T Consensus 32 ~~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHH
Confidence 37899999887532 123335555322 233456999988764
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.18 E-value=58 Score=27.70 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=30.1
Q ss_pred CCccccccccccccCCceeecC--CCCCcccHhhHHHHHhc----------CCCCCCcc
Q 048328 61 EGTDCSVCLSEFQEDESLRLLP--KCNHAFHISCIDTWLRS----------HTNCPLCR 107 (318)
Q Consensus 61 e~~~C~ICle~f~~~~~~~~lP--~CgH~FH~~CI~~Wl~~----------~~tCP~CR 107 (318)
.+..|.||-+- ..++... .|...||..||..++-. .=.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 35689999874 3444443 58899999999988733 12487885
No 156
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.95 E-value=9.3 Score=35.87 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCCccccccccccccCCceee---cCCCCCcccHhhHHHHHhcCCCCCCcccC
Q 048328 60 IEGTDCSVCLSEFQEDESLRL---LPKCNHAFHISCIDTWLRSHTNCPLCRAP 109 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~---lP~CgH~FH~~CI~~Wl~~~~tCP~CR~~ 109 (318)
.....|+||-..-... .+.. ..+=.+.+|..|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3457899998864332 1110 01123567788888897778899999653
No 157
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.83 E-value=58 Score=23.41 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=29.9
Q ss_pred CCCccccccccccccCCceeecCCCCCcccHhhHHHHHh---cCCCCCCccc
Q 048328 60 IEGTDCSVCLSEFQEDESLRLLPKCNHAFHISCIDTWLR---SHTNCPLCRA 108 (318)
Q Consensus 60 ~e~~~C~ICle~f~~~~~~~~lP~CgH~FH~~CI~~Wl~---~~~tCP~CR~ 108 (318)
.+...| ||..... +...+..-.|..-||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 9987654 334555556999999999853211 2345888753
Done!