BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048333
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
+L+EL L NGF G++P ++ N L L LSFN LSG P S G+ S L+ L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT 323
++P + L+ L L FN+ +G++ + N +L I ++ +G+I + L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
L +L ++ NS+ G + + L ++L LD++ N
Sbjct: 512 NLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTN 545
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
G++P ++ N L L LS N G +P+S+ +L L L L N L GE P +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
L+ L L ++P + N T L ++ L N +G++ IG L +L ++ ++ +FS
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLXXXXXXXX 372
G I + L + L+ LD+ N + GT+ + S K + A I+ R +
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKE 583
Query: 373 XXXXSQKIQYRGLRSCNLTKF 393
++++G+RS L +
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRL 604
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 193 GELPI-SMGNLGSLKELDLSQNGFFGELPTSIRNL-FSLEKLDLSFNKLSGE-FPWSTGN 249
GELP+ ++ + LK LDLS N F GELP S+ NL SL LDLS N SG P N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 250 F-SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
++L+ L L++ GF K+P ++ N + L L L FN SG + S+G+L L + +
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
G+I L + L L + N G E+ L++ NL + +S NR
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNR 498
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 16/310 (5%)
Query: 41 NTGHVIKLNLSHGCLFGSINSS-SSLFKLVHLK-WLNLALNDFNSSEIPPEIINLSRLEL 98
N ++ L+LS L G+I SS SL KL LK WLN+ EIP E++ + LE
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-----EGEIPQELMYVKTLET 467
Query: 99 QKPSFENLFEKL-------SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMC 151
F +L ++ +NL ++L + + IP I L +L + L N
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 152 SFFLIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGSLKELDLS 211
L I G+ A+ G+ + + N G KE +
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 212 QN--GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269
N F G + L + +++ G + N S+ L++ +P
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329
IG+ L L LG N+ SG + +G+LR L ++ ++ G+I ++ LT L +D
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 330 MAQNSYGGTV 339
++ N+ G +
Sbjct: 708 LSNNNLSGPI 717
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 193 GELPISM-GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNF 250
GE+P + G +L LDLS N F+G +P + LE L LS N SGE P T
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 251 SSLKLLNLRSCGFWSKVPHSIGNFTR-LQFLFLGFNNFSGDLLGSI--GNLRSLEVIYIA 307
LK+L+L F ++P S+ N + L L L NNFSG +L ++ +L+ +Y+
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV 339
F+G+I +L N ++LV L ++ N GT+
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 192 FGELPISMGNLGSLKELDLSQNGFFGELPT-SIRNLFSLEKLDLSFNKLSGEFPWSTGNF 250
+G +P G+ L+ L LS N F GELP ++ + L+ LDLSFN+ SGE P S N
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 251 S-SLKLLNLRSCGFWSKV-PHSIGNFTR-LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307
S SL L+L S F + P+ N LQ L+L N F+G + ++ N L ++++
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
SG I SSL +L++L L + N G + +++ K LE L + N
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFN 473
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
L+ LD+S N F +P + + +L+ LD+S NKLSG+F + + LKLLN+ S F
Sbjct: 199 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI-GNLRSLEVIYIAKCNFSGQITSSLRNLT 323
+P LQ+L L N F+G++ + G +L + ++ +F G + + +
Sbjct: 258 GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
L L ++ N++ G + +D LL + L+ LD+S N
Sbjct: 316 LLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNE 351
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
Query: 198 SMGNLGSLKELDLSQN--GFFGELPTSIRNLFSLEKLDLSFNKLSGE--FPWS------- 246
S+G+ LK L++S N F G++ ++ L SLE LDLS N +SG W
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 247 ------TGNFSS----------LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290
+GN S L+ L++ S F + +P +G+ + LQ L + N SGD
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 235
Query: 291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
+I L+++ I+ F G I L L L +A+N + G + D L +
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP-DFLSGACDT 292
Query: 351 LEALDISLNR 360
L LD+S N
Sbjct: 293 LTGLDLSGNH 302
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
G +P +G+L L LDLS N G +P ++ L L ++DLS N LSG P
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
G +P +G++ L L+L N G +P + +L L LDLS NKL G P + +
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 253 LKLLNLRSCGFWSKVPHSIGNF 274
L ++L + +P +G F
Sbjct: 703 LTEIDLSNNNLSGPIPE-MGQF 723
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
+L+EL L NGF G++P ++ N L L LSFN LSG P S G+ S L+ L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT 323
++P + L+ L L FN+ +G++ + N +L I ++ +G+I + L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
L +L ++ NS+ G + + L ++L LD++ N
Sbjct: 515 NLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTN 548
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
G++P ++ N L L LS N G +P+S+ +L L L L N L GE P +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
L+ L L ++P + N T L ++ L N +G++ IG L +L ++ ++ +FS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLXXXXXXXX 372
G I + L + L+ LD+ N + GT+ + S K + A I+ R +
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKE 586
Query: 373 XXXXSQKIQYRGLRSCNLTKF 393
++++G+RS L +
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRL 607
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 193 GELPI-SMGNLGSLKELDLSQNGFFGELPTSIRNL-FSLEKLDLSFNKLSGE-FPWSTGN 249
GELP+ ++ + LK LDLS N F GELP S+ NL SL LDLS N SG P N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 250 F-SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
++L+ L L++ GF K+P ++ N + L L L FN SG + S+G+L L + +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
G+I L + L L + N G E+ L++ NL + +S NR
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNR 501
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 193 GELPISM-GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNF 250
GE+P + G +L LDLS N F+G +P + LE L LS N SGE P T
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 251 SSLKLLNLRSCGFWSKVPHSIGNFTR-LQFLFLGFNNFSGDLLGSI--GNLRSLEVIYIA 307
LK+L+L F ++P S+ N + L L L NNFSG +L ++ +L+ +Y+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV 339
F+G+I +L N ++LV L ++ N GT+
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 16/310 (5%)
Query: 41 NTGHVIKLNLSHGCLFGSINSS-SSLFKLVHLK-WLNLALNDFNSSEIPPEIINLSRLEL 98
N ++ L+LS L G+I SS SL KL LK WLN+ EIP E++ + LE
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-----EGEIPQELMYVKTLET 470
Query: 99 QKPSFENLFEKL-------SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMC 151
F +L ++ +NL ++L + + IP I L +L + L N
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 152 SFFLIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGSLKELDLS 211
L I G+ A+ G+ + + N G KE +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 212 QN--GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269
N F G + L + +++ G + N S+ L++ +P
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329
IG+ L L LG N+ SG + +G+LR L ++ ++ G+I ++ LT L +D
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 330 MAQNSYGGTV 339
++ N+ G +
Sbjct: 711 LSNNNLSGPI 720
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 192 FGELPISMGNLGSLKELDLSQNGFFGELPT-SIRNLFSLEKLDLSFNKLSGEFPWSTGNF 250
+G +P G+ L+ L LS N F GELP ++ + L+ LDLSFN+ SGE P S N
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 251 S-SLKLLNLRSCGFWSKV-PHSIGNFTR-LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307
S SL L+L S F + P+ N LQ L+L N F+G + ++ N L ++++
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
SG I SSL +L++L L + N G + +++ K LE L + N
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFN 476
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
L+ LD+S N F +P + + +L+ LD+S NKLSG+F + + LKLLN+ S F
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI-GNLRSLEVIYIAKCNFSGQITSSLRNLT 323
+P LQ+L L N F+G++ + G +L + ++ +F G + + +
Sbjct: 261 GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
L L ++ N++ G + +D LL + L+ LD+S N
Sbjct: 319 LLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNE 354
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
Query: 198 SMGNLGSLKELDLSQN--GFFGELPTSIRNLFSLEKLDLSFNKLSGE--FPWS------- 246
S+G+ LK L++S N F G++ ++ L SLE LDLS N +SG W
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 247 ------TGNFSS----------LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290
+GN S L+ L++ S F + +P +G+ + LQ L + N SGD
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238
Query: 291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
+I L+++ I+ F G I L L L +A+N + G + D L +
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP-DFLSGACDT 295
Query: 351 LEALDISLNR 360
L LD+S N
Sbjct: 296 LTGLDLSGNH 305
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
G +P +G+L L LDLS N G +P ++ L L ++DLS N LSG P
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
G +P +G++ L L+L N G +P + +L L LDLS NKL G P + +
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 253 LKLLNLRSCGFWSKVPHSIGNF 274
L ++L + +P +G F
Sbjct: 706 LTEIDLSNNNLSGPIPE-MGQF 726
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
G +P + + +L LD S N G LP SI +L +L + N++SG P S G+FS
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 253 L-KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311
L + + K+P + N L F+ L N GD G+ ++ + I++AK +
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 312 S---GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
+ G++ S +NL LD+ N GT+ LT K L +L++S N
Sbjct: 234 AFDLGKVGLS-KNLNG---LDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN 278
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 266 KVPHSIGNFTRLQFLFLG-FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ 324
+P S+ N L FL++G NN G + +I L L +YI N SG I L +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362
LV LD + N+ GT+ + +S NL + NR S
Sbjct: 127 LVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRIS 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 47/269 (17%)
Query: 17 TMASWKPEEGSVDC--YSWDVVHCNKNTG--HVIKLNLSHGCLFGSINSSSSLFKLVHLK 72
T++SW P + DC +W V C+ +T V L+LS L SSL L +L
Sbjct: 23 TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79
Query: 73 WLNLALNDFNSSEIPPEIINLSRLELQKPSFENL-------FEKLSNLKTLNLGDVSIDS 125
+L + + IPP I L++L + N+ ++ L TL+ ++
Sbjct: 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139
Query: 126 TIPHNIKNLSSLTFVSLRNCELQAMCS---------FFLIQIS-----GRIPXXXXXXXX 171
T+P +I +L +L ++ + F + IS G+IP
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 172 XXXXXXXXXXXQGEAASFRCFGE-------------LPISMGNLG---SLKELDLSQNGF 215
+G+A+ FG L +G +G +L LDL N
Sbjct: 200 AFVDLSRNML-EGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
+G LP + L L L++SFN L GE P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN 286
FS + LDLSFN L +S +F L++L+L C + + + + L L L N
Sbjct: 29 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 88
Query: 287 FSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346
LG+ L SL+ + + N + + +L L L++A N + +L +
Sbjct: 89 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFS 147
Query: 347 SWKNLEALDISLNR 360
+ NLE LD+S N+
Sbjct: 148 NLTNLEHLDLSSNK 161
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEF 243
+G+L +LKEL+++ N +LP NL +LE LDLS NK+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
F ++P ++ FS + LDLSFN L +S +F L++L+L C + + + +
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L L L N LG+ L SL+ + + N + + +L L L++A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ +L ++ NLE LD+S N+
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEF 243
+G+L +LKEL+++ N +LP NL +LE LDLS NK+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN 286
FS + LDLSFN L +S +F L++L+L C + + + + L L L N
Sbjct: 30 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 89
Query: 287 FSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346
LG+ L SL+ + + N + + +L L L++A N + +L +
Sbjct: 90 IQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFS 148
Query: 347 SWKNLEALDISLNR 360
+ NLE LD+S N+
Sbjct: 149 NLTNLEHLDLSSNK 162
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEF 243
+G+L +LKEL+++ N +LP NL +LE LDLS NK+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
F ++P ++ FS + LDLSFN L +S +F L++L+L C + + + +
Sbjct: 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 100
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L L L N LG+ L SL+ + + N + + +L L L++A N
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ +L ++ NLE LD+S N+
Sbjct: 161 -QSFKLPEYFSNLTNLEHLDLSSNK 184
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS 251
FG+ P L SLK L + N G S +L SLE LDLS N LS + S +F
Sbjct: 340 FGQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395
Query: 252 --SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG-NLRSLEVIYIAK 308
SLK L+L G + + +G +L+ L +N S+ +LR+L + I+
Sbjct: 396 TISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454
Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
+ L+ L VL MA NS+ D+ T +NL LD+S
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLS 502
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 46/172 (26%)
Query: 100 KPSFENLFEKLSNLKTLNL-GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI 158
+ +F +F LS+L+ L + G+ ++ +P L +LTF+ L C+L+ +
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------- 510
Query: 159 SGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE 218
P + +L SL+ L++S N FF
Sbjct: 511 -------------------------------------PTAFNSLSSLQVLNMSHNNFFSL 533
Query: 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGFWSKVPH 269
+ L SL+ LD S N + +F SSL LNL F H
Sbjct: 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKL 239
+G+L +LKEL+++ N +LP NL +LE LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
F ++P ++ FS + LDLSFN L +S +F L++L+L C + + + +
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L L L N LG+ L SL+ + + N + + +L L L++A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ +L ++ NLE LD+S N+
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF- 250
FG+ P L SLK L + N G S +L SLE LDLS N LS + S +F
Sbjct: 316 FGQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 251 -SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG-NLRSLEVIYIAK 308
+SLK L+L G + + +G +L+ L +N S+ +LR+L + I+
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
+ L+ L VL MA NS+ D+ T +NL LD+S
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLS 478
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKL 239
+G+L +LKEL+++ N +LP NL +LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
F ++P ++ FS + LDLSFN L +S +F L++L+L C + + + +
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L L L N LG+ L SL+ + + N + + +L L L++A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ +L ++ NLE LD+S N+
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF- 250
FG+ P L SLK L + N G S +L SLE LDLS N LS + S +F
Sbjct: 316 FGQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 251 -SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG-NLRSLEVIYIAK 308
+SLK L+L G + + +G +L+ L +N S+ +LR+L + I+
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
+ L+ L VL MA NS+ D+ T +NL LD+S
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLS 478
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 46/172 (26%)
Query: 100 KPSFENLFEKLSNLKTLNL-GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI 158
+ +F +F LS+L+ L + G+ ++ +P L +LTF+ L C+L+ +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------- 486
Query: 159 SGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE 218
P + +L SL+ L++S N FF
Sbjct: 487 -------------------------------------PTAFNSLSSLQVLNMSHNNFFSL 509
Query: 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGFWSKVPH 269
+ L SL+ LD S N + +F SSL LNL F H
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKL 239
+G+L +LKEL+++ N +LP NL +LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
F ++P ++ FS + LDLS+N L +S +F L++L+L C + + + +
Sbjct: 20 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L L L N LG+ L SL+ + + N + + +L L L++A N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ +L ++ NLE LD+S N+
Sbjct: 138 -QSFKLPEYFSNLTNLEHLDLSSNK 161
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEF 243
+G+L +LKEL+++ N +LP NL +LE LDLS NK+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
F ++P ++ FS + LDLS+N L +S +F L++L+L C + + + +
Sbjct: 21 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L L L N LG+ L SL+ + + N + + +L L L++A N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ +L ++ NLE LD+S N+
Sbjct: 139 -QSFKLPEYFSNLTNLEHLDLSSNK 162
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 199 MGNLGSLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEF 243
+G+L +LKEL+++ N +LP NL +LE LDLS NK+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 225 NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNL-----RSCGFWSKVPHSIGNFTRLQF 279
+L SLE LDLS N LS G SSLK LNL ++ G S P N T LQ
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQT 127
Query: 280 LFLG----FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L +G F+ + +L LE+ ++ N+ Q S+R++ L L ++++++
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLHLSESAF 186
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ D+ L+S + LE D +L R
Sbjct: 187 LLEIFADI-LSSVRYLELRDTNLAR 210
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 225 NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNL-----RSCGFWSKVPHSIGNFTRLQF 279
+L SLE LDLS N LS G SSLK LNL ++ G S P N T LQ
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQT 153
Query: 280 LFLG----FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
L +G F+ + +L LE+ ++ N+ Q S+R++ L L ++++++
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLHLSESAF 212
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
+ D+ L+S + LE D +L R
Sbjct: 213 LLEIFADI-LSSVRYLELRDTNLAR 236
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPW 245
+ +F+CF +L +ELDL+ G LP+ ++ L L+KL LS N
Sbjct: 268 STTFQCFTQL----------QELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQI 316
Query: 246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTR---LQFLFLGFNNFSGDLLGS--IGNLRS 300
S NF SL L +R G K+ +G + LQ L L N+ S + NL
Sbjct: 317 SAANFPSLTHLYIR--GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSH 374
Query: 301 LEVIYIAKCNFSGQITSSLRNLTQLVVLDMA 331
L+ + ++ G + + + QL +LD+A
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 36 VHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALND---FNSS---EIPP- 88
V C + G++ L+LSH + S S L L HL+ LNL+ N+ S E P
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 89 EIINL--SRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCE 146
E+++L +RL + P ++ F+ L L+ LNL +D++ H + L L ++L+
Sbjct: 400 ELLDLAFTRLHINAP--QSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNH 457
Query: 147 LQ 148
Q
Sbjct: 458 FQ 459
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK 254
LP S+ NL +LK L + +N L +I +L LE+LDL +P G + LK
Sbjct: 198 LPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 255 LLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
L L+ C +P I T+L+ L L
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST 247
+F CF L+ELDL+ ELP+ + L +L+KL LS NK S
Sbjct: 273 TFHCFS----------GLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 248 GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307
NF SL L+++ GN RL+ L ++ NLR L++ +
Sbjct: 322 SNFPSLTHLSIK------------GNTKRLE--------LGTGCLENLENLRELDLSH-D 360
Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDV-LLTSWKNLEALDISLNRSSV 363
S LRNL+ L L++ SY + L LE LD++ R V
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNL---SYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 38 CNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS------SEIPP-EI 90
C +N ++ +L+LSH + S + L L HL+ LNL+ N+ S E P E+
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 91 INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143
++L+ L+ ++ F+ L LK LNL +D + L +L ++L+
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277
++P+S +N+ DLSFN L +S NFS L+ L+L C + + L
Sbjct: 24 DIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337
L L N GS L SLE + + + + + L L L++A N +
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIH 136
Query: 338 TVELDVLLTSWKNLEALDISLN 359
+ +L ++ NL +D+S N
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYN 158
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 100 KPSFENLFEKLSNLKTLNL-GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
K F+ +F L++L TL + G+ D+T+ + N ++LTF+ L C+L+ +
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 483
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277
++P+S +N+ DLSFN L +S NFS L+ L+L C + + L
Sbjct: 29 DIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337
L L N GS L SLE + + + + + L L L++A N +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIH 141
Query: 338 TVELDVLLTSWKNLEALDISLN 359
+ +L ++ NL +D+S N
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYN 163
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 100 KPSFENLFEKLSNLKTLNL-GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
K F+ +F L++L TL + G+ D+T+ + N ++LTF+ L C+L+ +
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS----GEFPWSTGNFSSLKLLNLRS 260
L+EL+L++N P + NLF+L L L N+L G F TG S+L L++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF---TG-LSNLTKLDISE 113
Query: 261 CGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLR 320
+ + + L+ L +G N+ + L SLE + + KCN + T +L
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 321 NLTQLVVLDM 330
+L L+VL +
Sbjct: 174 HLHGLIVLRL 183
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL 253
ELP + NL +L+ LDLS N LP + + F L+ F+ + PW GN +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNL 318
Query: 254 KLLNLR 259
+ L +
Sbjct: 319 QFLGVE 324
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277
ELP I+NL +L LDLS N+L+ P G+ LK + +P GN L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNL 318
Query: 278 QFL 280
QFL
Sbjct: 319 QFL 321
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 67 KLVHLKWLNLALNDFNS--SEIPPEIINLSRLELQKPSFENL----FEKLSNLKTLNLGD 120
KL +L +L L N S + ++ NL+RL+L ++L F+KL+ LK L+L D
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
+ S L+SLT + L N CS L
Sbjct: 191 NQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 59 INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL----FEKLSNLK 114
I S + L ++++L L N + E+ NL+ L L ++L F+KL+NLK
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
L L + + S L++LT++ L + +LQ++
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSL 148
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 47 KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALN------DFNSSEIPP-EIINLSRLELQ 99
KL+LSH + S + L L HL++LNL+ N D E P E+++++ L
Sbjct: 353 KLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH 412
Query: 100 KPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ--AMCSFFLIQ 157
+ + F+ L L+ LNL +D++ H + L L ++L+ Q ++ L+Q
Sbjct: 413 VKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQ 472
Query: 158 ISGRI 162
+ G +
Sbjct: 473 MVGSL 477
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 48/200 (24%)
Query: 183 QGEAASFRCFGELPIS------------MGNLGSLKELDLSQNGFFGE--LPTSIRNLFS 228
Q AASF +L I + L +L++LDLS + ++NL
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 229 LEKLDLSFNK------------------------LSGEFPWST-GNFSSLKLLNLRSCGF 263
L+ L+LS+N+ L + P S N L++LNL C
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSG------DLLGSIGNLRSLEVIYIAKCNFSGQITS 317
+ H + L+ L L N+F +LL +G SLE++ ++ CN
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVG---SLEILILSSCNLLSIDQQ 493
Query: 318 SLRNLTQLVVLDMAQNSYGG 337
+ L + LD++ NS G
Sbjct: 494 AFHGLRNVNHLDLSHNSLTG 513
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
L+ L L+ NG S +L SLE LDLS+N LS SSL LNL +
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 265 SKVPHSI-GNFTRLQFLFLG-FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
+ S+ + T+LQ L +G + F+ L LE + I + SL+++
Sbjct: 112 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
Query: 323 TQL--VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
+ ++L M Q+ + +DV +S + LE D L+
Sbjct: 172 QNVSHLILHMKQHILLLEIFVDV-TSSVECLELRDTDLD 209
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%)
Query: 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC 261
L +L+ L L N + R+L +L L L N++S + SL L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 262 GFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306
PH+ + RL L+L NN S ++ LR+L+ + +
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSGEFP 244
AASFR L I + L +D + F G L LE+LDLS N +L P
Sbjct: 48 AASFRACRNLTILWLHSNVLARIDAA--AFTG--------LALLEQLDLSDNAQLRSVDP 97
Query: 245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG---DLLGSIGNLRSL 301
+ L L+L CG P LQ+L+L N D +GNL L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN------ 249
P L +L LDLS N + L LE LDL N L+ W N
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIY 535
Query: 250 ----FSSLKLLNLRSCGFWSKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVI 304
S L +LNL S GF ++P + + L+ + LG NN + N SL+ +
Sbjct: 536 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 594
Query: 305 YIAKCNFSGQITS--------SLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
+ K ITS + RNLT+ LDM N + T E +W N
Sbjct: 595 NLQK----NLITSVEKKVFGPAFRNLTE---LDMRFNPFDCTCESIAWFVNWIN 641
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%)
Query: 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC 261
L +L+ L L N + R+L +L L L N++S + SL L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 262 GFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306
PH+ + RL L+L NN S ++ LR+L+ + +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSGEFP 244
AASFR L I + L +D + F G L LE+LDLS N +L P
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAA--AFTG--------LALLEQLDLSDNAQLRSVDP 98
Query: 245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG---DLLGSIGNLRSL 301
+ L L+L CG P LQ+L+L N D +GNL L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN------ 249
P L +L LDLS N + L LE LDL N L+ W N
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIY 530
Query: 250 ----FSSLKLLNLRSCGFWSKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVI 304
S L +LNL S GF ++P + + L+ + LG NN + N SL+ +
Sbjct: 531 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 305 YIAKCNFSGQITS--------SLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
+ K ITS + RNLT+ LDM N + T E +W N
Sbjct: 590 NLQK----NLITSVEKKVFGPAFRNLTE---LDMRFNPFDCTCESIAWFVNWIN 636
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN------ 249
P L +L LDLS N + L LE LDL N L+ W N
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIY 540
Query: 250 ----FSSLKLLNLRSCGFWSKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVI 304
S L +LNL S GF ++P + + L+ + LG NN + N SL+ +
Sbjct: 541 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599
Query: 305 YIAKCNFSGQITS--------SLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
+ K ITS + RNLT+ LDM N + T E +W N
Sbjct: 600 NLQK----NLITSVEKKVFGPAFRNLTE---LDMRFNPFDCTCESIAWFVNWIN 646
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
L+ L L+ NG S +L SLE LDLS+N LS SSL LNL +
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 265 SKVPHSI-GNFTRLQFLFLG-FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
+ S+ + T+LQ L +G + F+ L LE + I + SL+++
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 323 TQL--VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
+ ++L M Q+ + +DV +S + LE D L+
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDV-TSSVECLELRDTDLD 235
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 56 FGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRL-ELQ------KPSFENLFE 108
G I+S +L HL L L N E P S + ELQ K +F
Sbjct: 41 LGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKMFL 99
Query: 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSL 142
L LKTLNL D I +P + ++L+SLT ++L
Sbjct: 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 1/125 (0%)
Query: 210 LSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP 268
L N G + L LE+LDLS N +L P + L L+L CG P
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVL 328
LQ+L+L NN + +L +L +++ + R L L L
Sbjct: 122 GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRL 181
Query: 329 DMAQN 333
+ QN
Sbjct: 182 LLHQN 186
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 50/211 (23%)
Query: 65 LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQ----KPSFENLFEKLSNLKTLNL-G 119
L +L HL + + L + + + NL L++ + +F +F LS+L+ L + G
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 120 DVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPXXXXXXXXXXXXXXXX 179
+ ++ +P L +LTF+ L C+L+ Q+S
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLS-------------------- 191
Query: 180 XXXQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKL 239
P + +L SL+ L++S N FF + L SL+ LD S N +
Sbjct: 192 ----------------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Query: 240 SGEFPWSTGNF-SSLKLLNLRSCGFWSKVPH 269
+F SSL LNL F H
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 59 INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL----FEKLSNLK 114
I S + L ++++L L N + E+ NL+ L L ++L F+KL+NLK
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
L L + + S L++LT+++L + +LQ++
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 25/269 (9%)
Query: 63 SSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGD 120
+ L L +L L L N + + NL+RLEL + ++ L++L+ LN G+
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF----LIQISGRIPXXXXXXXXXXXXX 176
D N+ L L S + ++ + LI + +I
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 177 XXXXXXQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
Q + G ++ +L +L +LDL+ N P + L L +L L
Sbjct: 221 LSLNGNQ-----LKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
N++S P + ++L L L P I N L +L L FNN S + +
Sbjct: 270 NQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVS 323
Query: 297 NLRSLEVIYIAKCNFSGQITSSLRNLTQL 325
+L L+ ++ + S SSL NLT +
Sbjct: 324 SLTKLQRLFFSNNKVSD--VSSLANLTNI 350
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L NN + G + L +L+ + + +
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 182
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L NN + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL-KLL 256
++ L SL++L+ S N P + NL +LE+LD+S NK+S + S L KL
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS--------DISVLAKLT 195
Query: 257 NLRSCGFWSKVPHSI---GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
NL S + I G T L L L N +G++ +L +L + +A S
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 253
Query: 314 QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352
+ L LT+L L + N L LT+ NLE
Sbjct: 254 --LAPLSGLTKLTELKLGANQISNISPL-AGLTALTNLE 289
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L NN + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L NN + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 25 EGSVDCYSWDVVHCNKN-TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS 83
+ SVDC S + N KL+L L S S + +L L+ L LND
Sbjct: 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKL--SSLPSKAFHRLTKLRLL--YLNDNKL 73
Query: 84 SEIPP----EIINLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLS 135
+P E+ NL L + + L F++L NL L L + S P +L+
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 136 SLTFVSLRNCELQAM 150
LT++SL ELQ++
Sbjct: 134 KLTYLSLGYNELQSL 148
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L NN + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS 251
F +P + N L +DLS N S N+ L L LS+N+L P +
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 252 SLKLLNLRSCGFWSKVPH-SIGNFTRLQFLFLGFNNFSGD 290
SL+LL+L S VP + + + L L +G N D
Sbjct: 103 SLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYCD 141
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 25/269 (9%)
Query: 63 SSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGD 120
+ L L +L L L N + + NL+RLEL + ++ L++L+ L+ G+
Sbjct: 105 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 164
Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF----LIQISGRIPXXXXXXXXXXXXX 176
D N+ L L S + ++ + LI + +I
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 224
Query: 177 XXXXXXQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
Q + G ++ +L +L +LDL+ N P + L L +L L
Sbjct: 225 LSLNGNQ-----LKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 273
Query: 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
N++S P + ++L L L P I N L +L L FNN S + +
Sbjct: 274 NQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVS 327
Query: 297 NLRSLEVIYIAKCNFSGQITSSLRNLTQL 325
+L L+ ++ A S SSL NLT +
Sbjct: 328 SLTKLQRLFFANNKVSD--VSSLANLTNI 354
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL-KLL 256
++ L SL++L S N P + NL +LE+LD+S NK+S + S L KL
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS--------DISVLAKLT 195
Query: 257 NLRSCGFWSKVPHSI---GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
NL S + I G T L L L N +G++ +L +L + +A S
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 253
Query: 314 QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352
+ L LT+L L + N L LT+ NLE
Sbjct: 254 --LAPLSGLTKLTELKLGANQISNISPL-AGLTALTNLE 289
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL-KLL 256
++ L SL++L S N P + NL +LE+LD+S NK+S + S L KL
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS--------DISVLAKLT 195
Query: 257 NLRSCGFWSKVPHSI---GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
NL S + I G T L L L N +G++ +L +L + +A S
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 253
Query: 314 QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352
+ L LT+L L + N L LT+ NLE
Sbjct: 254 --LAPLSGLTKLTELKLGANQISNISPL-AGLTALTNLE 289
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 25/269 (9%)
Query: 63 SSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGD 120
+ L L +L L L N + + NL+RLEL + ++ L++L+ LN G+
Sbjct: 101 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF----LIQISGRIPXXXXXXXXXXXXX 176
D N+ L L S + ++ + LI + +I
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 177 XXXXXXQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
Q + G ++ +L +L +LDL+ N P + L L +L L
Sbjct: 221 LSLNGNQ-----LKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
N++S P + ++L L L P I N L +L L FNN S + +
Sbjct: 270 NQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVS 323
Query: 297 NLRSLEVIYIAKCNFSGQITSSLRNLTQL 325
+L L+ ++ S SSL NLT +
Sbjct: 324 SLTKLQRLFFYNNKVSD--VSSLANLTNI 350
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSS--LRNLTQLVVLDMAQNS 334
L L L +N F G+ L +LEV+ + +CN G + S + LT L +L + N+
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140
Query: 335 YGGTVELDVLLTSWKNLEALDISLNR 360
++ + + LD++ N+
Sbjct: 141 I-KKIQPASFFLNMRRFHVLDLTFNK 165
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 274 FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSS--LRNLTQLVVLDMA 331
+ L L L +N F G+ L +LEV+ + +CN G + S + LT L +L +
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 332 QNSYGGTVELDVLLTSWKNLEALDISLNR 360
N+ ++ + + LD++ N+
Sbjct: 138 DNNI-KKIQPASFFLNMRRFHVLDLTFNK 165
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 202 LGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS 260
L L +L+LSQN F G + + + NL LE LDLS+N + + G+ S L L NL+
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR-----ALGDQSFLGLPNLKE 375
Query: 261 CGF----WSKVPHSI-GNFTRLQFLFLGFNNFSG-----DLLGSIGNLRSLEVIYIAKCN 310
VP I T LQ ++L N + D L N S + AKC+
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 435
Query: 311 FSGQITSSL 319
SG+ S+
Sbjct: 436 GSGKPVRSI 444
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 81 FNSSEIPPEIINLSRLELQKPSFE 104
F EIPP ++N ++++KP FE
Sbjct: 311 FKRGEIPPTLVNREVIKIRKPGFE 334
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 81 FNSSEIPPEIINLSRLELQKPSFE 104
F EIPP ++N ++++KP FE
Sbjct: 311 FKRGEIPPTLVNREVIKIRKPGFE 334
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 78 LNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKN 133
LN + PPEI ++ LE+Q ++ + E +L+ + ++ DS+IP ++N
Sbjct: 91 LNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENI----INKDSSIPQKMQN 142
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L N+ + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQE 181
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L N + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L N + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L N + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
G L L LDLS N LP + L +L LD+SFN+L+ + L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
+ P + +L+ L L N + G + L +L+ + + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,794,984
Number of Sequences: 62578
Number of extensions: 389332
Number of successful extensions: 1089
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 279
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)