Query 048333
Match_columns 413
No_of_seqs 226 out of 3376
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.3E-39 1.2E-43 336.2 27.3 372 13-413 43-440 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.6E-35 1.4E-39 305.4 24.0 342 41-413 91-464 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.8E-33 1.7E-37 251.7 7.7 344 43-413 78-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-30 2.4E-35 237.7 2.0 339 41-408 100-446 (873)
5 KOG0444 Cytoskeletal regulator 99.9 9.2E-29 2E-33 227.2 -2.7 340 42-412 6-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.1E-28 8.9E-33 222.9 -2.4 316 65-413 3-328 (1255)
7 PLN03210 Resistant to P. syrin 99.9 2.3E-21 5.1E-26 204.2 23.8 330 42-411 531-879 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 3.1E-25 6.8E-30 194.0 -7.6 360 41-413 66-540 (565)
9 PLN03210 Resistant to P. syrin 99.9 1.5E-20 3.2E-25 198.2 24.1 329 41-412 556-904 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 1.4E-23 3.1E-28 183.6 -6.0 259 107-391 248-541 (565)
11 KOG0618 Serine/threonine phosp 99.8 3.7E-23 8E-28 198.3 -4.2 203 204-412 242-487 (1081)
12 KOG0618 Serine/threonine phosp 99.8 2.1E-22 4.5E-27 193.2 -4.4 335 45-409 158-508 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 2.4E-18 5.2E-23 169.6 18.6 236 111-413 222-457 (788)
14 KOG4237 Extracellular matrix p 99.8 3.6E-20 7.8E-25 162.1 -2.4 257 41-311 65-358 (498)
15 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.4E-24 165.2 2.0 195 64-288 18-234 (319)
16 cd00116 LRR_RI Leucine-rich re 99.7 4.7E-19 1E-23 162.8 4.1 212 199-413 77-319 (319)
17 PRK15370 E3 ubiquitin-protein 99.7 3.2E-17 6.9E-22 162.6 15.2 246 111-413 178-427 (754)
18 PRK15387 E3 ubiquitin-protein 99.7 2.7E-16 5.8E-21 155.3 16.4 257 44-391 202-458 (788)
19 KOG4237 Extracellular matrix p 99.7 6.5E-19 1.4E-23 154.3 -4.9 253 111-390 67-358 (498)
20 PRK15370 E3 ubiquitin-protein 99.7 7.5E-16 1.6E-20 152.9 13.7 230 111-391 199-428 (754)
21 KOG0617 Ras suppressor protein 99.5 1.9E-16 4.1E-21 123.6 -5.8 115 195-312 71-186 (264)
22 KOG0617 Ras suppressor protein 99.5 5.4E-16 1.2E-20 121.1 -4.4 134 107-263 52-185 (264)
23 KOG1909 Ran GTPase-activating 99.4 1.2E-14 2.6E-19 126.0 -0.5 138 274-413 156-310 (382)
24 KOG1909 Ran GTPase-activating 99.4 1.8E-14 3.9E-19 125.0 -0.4 208 41-264 28-254 (382)
25 KOG3207 Beta-tubulin folding c 99.3 1.3E-13 2.7E-18 123.1 -1.1 212 167-391 118-339 (505)
26 KOG1259 Nischarin, modulator o 99.2 3.8E-12 8.2E-17 108.6 0.8 201 195-413 206-411 (490)
27 PLN03150 hypothetical protein; 99.1 1.9E-10 4E-15 114.1 10.6 132 19-181 390-526 (623)
28 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.3E-16 111.0 1.3 216 196-413 114-338 (505)
29 KOG1259 Nischarin, modulator o 99.1 2.2E-11 4.9E-16 103.9 1.0 190 107-312 210-412 (490)
30 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.6E-15 95.0 3.4 104 228-336 20-126 (175)
31 KOG4658 Apoptotic ATPase [Sign 99.0 7.7E-11 1.7E-15 119.4 2.7 109 106-235 566-676 (889)
32 KOG0532 Leucine-rich repeat (L 99.0 8.1E-12 1.8E-16 115.2 -4.4 168 231-413 79-246 (722)
33 PF14580 LRR_9: Leucine-rich r 99.0 7.5E-10 1.6E-14 90.3 6.6 82 199-281 60-146 (175)
34 COG4886 Leucine-rich repeat (L 99.0 1.4E-09 3.1E-14 102.8 8.5 133 198-336 158-290 (394)
35 KOG4658 Apoptotic ATPase [Sign 99.0 2.9E-10 6.3E-15 115.3 3.6 180 109-312 543-730 (889)
36 COG4886 Leucine-rich repeat (L 98.9 1.8E-09 4E-14 102.1 7.3 196 173-393 96-292 (394)
37 KOG2982 Uncharacterized conser 98.8 6.3E-10 1.4E-14 95.0 0.8 207 168-384 69-285 (418)
38 KOG4341 F-box protein containi 98.8 1.3E-10 2.8E-15 103.6 -3.6 314 20-352 101-455 (483)
39 KOG2982 Uncharacterized conser 98.8 7.7E-10 1.7E-14 94.5 0.1 226 112-355 46-285 (418)
40 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.7E-15 106.0 -3.5 169 115-312 79-247 (722)
41 KOG2120 SCF ubiquitin ligase, 98.8 1.8E-10 4E-15 98.3 -3.7 195 204-404 186-390 (419)
42 KOG2120 SCF ubiquitin ligase, 98.7 2.5E-10 5.4E-15 97.5 -4.7 179 137-334 187-374 (419)
43 PLN03150 hypothetical protein; 98.7 7.6E-08 1.6E-12 95.7 9.1 108 136-263 419-527 (623)
44 KOG0531 Protein phosphatase 1, 98.7 3.5E-09 7.6E-14 100.5 -0.7 174 107-311 91-267 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.6 2E-09 4.4E-14 90.8 -2.3 226 42-288 29-285 (388)
46 PF13855 LRR_8: Leucine rich r 98.6 3.2E-08 6.9E-13 66.2 3.6 61 111-182 1-61 (61)
47 KOG4341 F-box protein containi 98.6 9.5E-10 2.1E-14 98.2 -5.7 141 272-412 291-437 (483)
48 KOG0531 Protein phosphatase 1, 98.6 5.9E-09 1.3E-13 98.9 -1.7 217 109-361 70-289 (414)
49 PF13855 LRR_8: Leucine rich r 98.6 6.8E-08 1.5E-12 64.6 3.8 59 300-360 2-60 (61)
50 COG5238 RNA1 Ran GTPase-activa 98.4 4.7E-08 1E-12 82.8 0.5 198 132-336 27-255 (388)
51 KOG1859 Leucine-rich repeat pr 98.4 3.3E-09 7.2E-14 101.0 -9.0 179 196-391 102-292 (1096)
52 KOG1859 Leucine-rich repeat pr 98.3 7.9E-09 1.7E-13 98.5 -7.0 128 227-361 164-291 (1096)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.6E-06 5.7E-11 52.2 3.3 35 379-413 2-36 (44)
54 KOG3665 ZYG-1-like serine/thre 98.1 6.5E-07 1.4E-11 89.0 0.7 132 227-360 122-261 (699)
55 KOG3665 ZYG-1-like serine/thre 98.1 1.9E-06 4.1E-11 85.8 2.4 111 109-240 146-263 (699)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.6E-10 47.8 3.8 39 111-150 1-39 (44)
57 KOG1644 U2-associated snRNP A' 97.7 6.3E-05 1.4E-09 61.4 5.0 108 251-360 42-151 (233)
58 KOG1947 Leucine rich repeat pr 97.7 8.7E-06 1.9E-10 79.3 -0.0 35 325-360 403-438 (482)
59 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.2E-09 60.2 5.6 68 107-184 60-127 (233)
60 KOG4579 Leucine-rich repeat (L 97.6 2.8E-06 6.1E-11 64.7 -3.7 56 204-261 78-133 (177)
61 PRK15386 type III secretion pr 97.6 0.00082 1.8E-08 62.2 11.1 136 107-285 48-187 (426)
62 PRK15386 type III secretion pr 97.5 0.00043 9.4E-09 64.0 8.7 141 223-389 48-188 (426)
63 KOG4579 Leucine-rich repeat (L 97.5 1.2E-05 2.7E-10 61.2 -1.6 107 228-336 28-136 (177)
64 KOG1947 Leucine rich repeat pr 97.3 3.1E-05 6.8E-10 75.4 -1.3 178 226-403 187-389 (482)
65 PF13306 LRR_5: Leucine rich r 97.2 0.002 4.3E-08 50.2 7.6 10 225-234 33-42 (129)
66 PF13306 LRR_5: Leucine rich r 97.0 0.0039 8.4E-08 48.5 7.5 105 223-332 8-112 (129)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 57.9 2.2 63 297-360 63-127 (260)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 57.9 1.6 110 249-360 41-154 (260)
69 KOG2123 Uncharacterized conser 96.6 0.00012 2.7E-09 62.7 -3.8 39 321-360 61-99 (388)
70 KOG2123 Uncharacterized conser 96.2 0.00057 1.2E-08 58.8 -2.2 100 298-407 18-123 (388)
71 PF08263 LRRNT_2: Leucine rich 95.8 0.0055 1.2E-07 37.2 1.6 26 13-39 18-43 (43)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0043 9.2E-08 31.5 -0.1 19 380-398 2-20 (22)
73 KOG4308 LRR-containing protein 95.3 0.00011 2.5E-09 70.1 -10.8 185 205-391 89-303 (478)
74 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 27.3 1.2 15 379-393 2-16 (17)
75 PF00560 LRR_1: Leucine Rich R 94.4 0.018 3.9E-07 29.2 0.8 20 112-132 1-20 (22)
76 KOG4308 LRR-containing protein 93.8 0.00052 1.1E-08 65.7 -10.3 189 137-337 89-304 (478)
77 KOG3864 Uncharacterized conser 92.9 0.019 4.1E-07 47.4 -1.2 81 277-358 103-185 (221)
78 KOG3864 Uncharacterized conser 92.8 0.026 5.7E-07 46.5 -0.5 79 253-331 103-184 (221)
79 smart00369 LRR_TYP Leucine-ric 89.4 0.23 5E-06 26.1 1.3 15 380-394 4-18 (26)
80 smart00370 LRR Leucine-rich re 89.4 0.23 5E-06 26.1 1.3 15 380-394 4-18 (26)
81 KOG4242 Predicted myosin-I-bin 88.7 1.7 3.8E-05 40.9 7.1 207 204-411 215-450 (553)
82 KOG3763 mRNA export factor TAP 87.6 0.36 7.8E-06 46.1 2.2 39 321-359 216-254 (585)
83 PF13516 LRR_6: Leucine Rich r 84.9 0.51 1.1E-05 24.2 1.0 14 400-413 1-14 (24)
84 smart00364 LRR_BAC Leucine-ric 81.7 0.9 1.9E-05 23.9 1.1 18 378-395 2-19 (26)
85 KOG0473 Leucine-rich repeat pr 80.4 0.075 1.6E-06 44.9 -4.9 86 319-413 38-123 (326)
86 smart00365 LRR_SD22 Leucine-ri 79.8 1.4 3E-05 23.3 1.5 17 349-365 2-18 (26)
87 smart00367 LRR_CC Leucine-rich 75.7 2.1 4.6E-05 22.4 1.5 13 400-412 1-13 (26)
88 KOG0473 Leucine-rich repeat pr 72.2 0.09 1.9E-06 44.5 -6.6 88 64-183 37-124 (326)
89 smart00368 LRR_RI Leucine rich 71.9 3.4 7.4E-05 22.1 1.7 13 401-413 2-14 (28)
90 KOG3763 mRNA export factor TAP 71.8 1.3 2.9E-05 42.5 0.1 66 272-337 215-284 (585)
91 PF07723 LRR_2: Leucine Rich R 33.7 22 0.00048 18.6 0.8 11 325-335 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-39 Score=336.24 Aligned_cols=372 Identities=30% Similarity=0.482 Sum_probs=251.7
Q ss_pred cCCCCCCCCCCCCCCCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc----
Q 048333 13 DCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---- 88 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 88 (413)
|+....++|++ ..+||.|.|+.|.. .++++.|+++++.+.+..+. .+..+++|+.|++++|++.+. +|.
T Consensus 43 ~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~ 115 (968)
T PLN00113 43 DPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFT 115 (968)
T ss_pred CCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhc
Confidence 45566789986 78999999999974 57999999999998887766 889999999999999988764 554
Q ss_pred cccCcCccccCCcchhhh--hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccc
Q 048333 89 EIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL 166 (413)
Q Consensus 89 ~~~~L~~L~l~~~~i~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l 166 (413)
.+.+|+.|++.++.+... ...+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +.+|..+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~~p~~~ 184 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-----------GKIPNSL 184 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-----------ccCChhh
Confidence 455777778876666433 235788888888888887777888888888888888888776 4566677
Q ss_pred cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcc
Q 048333 167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWS 246 (413)
Q Consensus 167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 246 (413)
.++++|++|++++|.+... +|..+.++++|+.|++++|.+...+|..+..+++|++|++++|.+.+..|..
T Consensus 185 ~~l~~L~~L~L~~n~l~~~---------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQ---------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred hhCcCCCeeeccCCCCcCc---------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 7777777777777776543 4555666666666666666665556666666666666666666655555555
Q ss_pred cCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCC
Q 048333 247 TGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV 326 (413)
Q Consensus 247 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 326 (413)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 66666666666666665555555555666666666666655555555555556666666666665555555555566666
Q ss_pred EEECCCCcCcceechhHhhhcccCCCeeeccCccccccce------------------eeecccccc-ccccceeeeccC
Q 048333 327 VLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK------------------ATFDATTDT-TSQKIQYRGLRS 387 (413)
Q Consensus 327 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~------------------~~~~~~~~~-~~~~L~~L~l~~ 387 (413)
.|++++|.+.+..+ . .+..+++|+.|++++|.+...-+ .....+..+ .+++|+.|++++
T Consensus 336 ~L~L~~n~l~~~~p-~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 336 VLQLWSNKFSGEIP-K-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred EEECcCCCCcCcCC-h-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 66666665554443 2 34455555555555555321100 222233333 567788888888
Q ss_pred CCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333 388 CNLT-KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 388 ~~l~-~l~~~~~~l~~L~~L~l~~n~i 413 (413)
|.++ .+|..+..+++|+.|++++|++
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcc
Confidence 8877 6777788888888888888764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.6e-35 Score=305.44 Aligned_cols=342 Identities=31% Similarity=0.455 Sum_probs=231.1
Q ss_pred CCCceEEEecCCCccccccCCccccc-cccccceeeccccCCCCCCCC-ccccCcCccccCCcc----hhhhhhcCCCCc
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLF-KLVHLKWLNLALNDFNSSEIP-PEIINLSRLELQKPS----FENLFEKLSNLK 114 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~----i~~~~~~~~~L~ 114 (413)
..++++.|++++|.+.+.++. .+. .+++|++|++++|.+.+. +| ..+.+|+.|++.++. ++..++.+++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPD--DIFTTSSSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCCccCCcCCh--HHhccCCCCCEEECcCCccccc-cCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 456899999999998877765 444 899999999999988765 44 357788888887554 456688899999
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccc
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGE 194 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 194 (413)
+|++++|.+.+.+|..+.++++|++|++++|.+. +.+|..+.++++|+.|++++|.+.+.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~--------- 227 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLKWIYLGYNNLSGE--------- 227 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCccEEECcCCccCCc---------
Confidence 9999999888788888889999999999998876 45666677777777777777766543
Q ss_pred ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 274 (413)
+|..+..+++|++|++++|.+...+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 44455555555666665555554555555555555555555555544445555555555555555555544455555555
Q ss_pred CCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCC------------------------CCEEEC
Q 048333 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ------------------------LVVLDM 330 (413)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~------------------------L~~L~l 330 (413)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++ |+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 55555555555554444444444555555555555554444444444444 445555
Q ss_pred CCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCcEEeC
Q 048333 331 AQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNL 408 (413)
Q Consensus 331 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l 408 (413)
++|.+.+..+ . .+..+++|+.|++++|. ..+..+... .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 388 ~~n~l~~~~p-~-~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 388 FSNSLEGEIP-K-SLGACRSLRRVRLQDNS------FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred cCCEecccCC-H-HHhCCCCCCEEECcCCE------eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 5544443333 2 45667778888888887 344444444 7889999999999999 67777889999999999
Q ss_pred CCCCC
Q 048333 409 SDNRI 413 (413)
Q Consensus 409 ~~n~i 413 (413)
++|++
T Consensus 460 ~~n~~ 464 (968)
T PLN00113 460 ARNKF 464 (968)
T ss_pred cCcee
Confidence 99974
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=7.8e-33 Score=251.65 Aligned_cols=344 Identities=22% Similarity=0.212 Sum_probs=285.8
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCC-CCccccCcCccccCCcchhhh----hhcCCCCcEEE
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSE-IPPEIINLSRLELQKPSFENL----FEKLSNLKTLN 117 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~----~~~~~~L~~L~ 117 (413)
...+.|++++|.+....+. .|.++++|+.+++..|.++.+- .....++++.|.+.+|.|+.+ ++.++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4567899999998877666 7899999999999999887521 223456788899998888754 77899999999
Q ss_pred cCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccc
Q 048333 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPI 197 (413)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~ 197 (413)
++.|.+....-..|..-.++++|++++|.++++ -...|.++.+|..|.++.|+++.. -+.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-----------~~~~F~~lnsL~tlkLsrNrittL---------p~r 215 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-----------ETGHFDSLNSLLTLKLSRNRITTL---------PQR 215 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccc-----------ccccccccchheeeecccCccccc---------CHH
Confidence 999998754444566668899999999999854 345677888999999999999864 235
Q ss_pred cccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCC
Q 048333 198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277 (413)
Q Consensus 198 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 277 (413)
.|.++++|+.|++..|.+...-...|..+++|+.|.+..|.+...-...|..+.++++|++..|++......++.++..|
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 67889999999999998853324568899999999999999987777888899999999999999977777889999999
Q ss_pred CeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeecc
Q 048333 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357 (413)
Q Consensus 278 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 357 (413)
+.|++++|.+...-+.....+++|++|+|+.|+++...+..|..+..|++|++++|.++... ...|.++++|++||++
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCc
Confidence 99999999998877888888999999999999999777888899999999999999997433 3478999999999999
Q ss_pred Cccccccceeeecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333 358 LNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 358 ~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i 413 (413)
.|.++-. ..+..... .+++|+.|.+.+|++..+| ..|.++++|++|||.+|.|
T Consensus 374 ~N~ls~~---IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 374 SNELSWC---IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred CCeEEEE---EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 9995431 11112222 7899999999999999888 5689999999999999986
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-30 Score=237.67 Aligned_cols=339 Identities=23% Similarity=0.225 Sum_probs=233.8
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCC--CCccccCcCccccCCcchhhh----hhcCCCCc
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSE--IPPEIINLSRLELQKPSFENL----FEKLSNLK 114 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~----~~~~~~L~ 114 (413)
+.++++.+++..|.++ .+|. .....-+|++|++.+|.++... -...+..++.|+++.|.|... |..-.+++
T Consensus 100 nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELT-RIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred cCCcceeeeeccchhh-hccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 5567777777777664 2333 2333445777777777666541 112344566666665555443 44446788
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccc
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGE 194 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 194 (413)
+|++++|+++..-...|..+.+|.+|.+++|.++.+| +..|.++++|+.|++..|+|....
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-----------~r~Fk~L~~L~~LdLnrN~irive-------- 237 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-----------QRSFKRLPKLESLDLNRNRIRIVE-------- 237 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccC-----------HHHhhhcchhhhhhccccceeeeh--------
Confidence 8888888887666667777888888888888887432 245667888888888888776431
Q ss_pred ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 274 (413)
-..|.+++.|+.|.+..|.+......+|..+.++++|++..|.+...-..++..+..|+.|++++|.+....+..+..+
T Consensus 238 -~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 -GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred -hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 2356777888888888888776666677788888888888888776667777778888888888887766667777777
Q ss_pred CCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec-hhHhhhcccCCCe
Q 048333 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE-LDVLLTSWKNLEA 353 (413)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~L~~ 353 (413)
++|+.|+++.|.+++.....|..+..|++|+|+.|.+...-...|..+.+|+.||++.|.+...+. -...+.+++.|++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 888888888888877667777777888888888888765455567777888888888887763322 1336777888888
Q ss_pred eeccCccccccceeeeccccccccccceeeeccCCCCCCc-chHhhcCCCCcEEeC
Q 048333 354 LDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNL 408 (413)
Q Consensus 354 L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l 408 (413)
|.+.||+++.++...+. .++.|++|++.+|.|..+ |..|..+ .|+.|-+
T Consensus 397 L~l~gNqlk~I~krAfs-----gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFS-----GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eeecCceeeecchhhhc-----cCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 88888887766554443 456788888888877633 4555555 5555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=9.2e-29 Score=227.17 Aligned_cols=340 Identities=22% Similarity=0.310 Sum_probs=192.7
Q ss_pred CCceEEEecCCCcccc-ccCCccccccccccceeeccccCCCCCCCCccccCcC---ccccCCcchhhh---hhcCCCCc
Q 048333 42 TGHVIKLNLSHGCLFG-SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLS---RLELQKPSFENL---FEKLSNLK 114 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~---~L~l~~~~i~~~---~~~~~~L~ 114 (413)
.+-|+-+++++|++++ ..|. ...++..++.|.+...++. .+|++++.|+ +|+++.+.+... +..+|.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3456777888887774 4554 6677777887777766554 2666655444 445556665554 44567777
Q ss_pred EEEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333 115 TLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193 (413)
Q Consensus 115 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 193 (413)
.+.++.|++.. .+|..+..+..|++|++++|++. ..|..+...+++-.|++++|+|.....
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~------------EvP~~LE~AKn~iVLNLS~N~IetIPn------ 143 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR------------EVPTNLEYAKNSIVLNLSYNNIETIPN------ 143 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh------------hcchhhhhhcCcEEEEcccCccccCCc------
Confidence 77787777642 45666777788888888888775 566777777777777777777764322
Q ss_pred cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcc-ccccchhhc
Q 048333 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF-WSKVPHSIG 272 (413)
Q Consensus 194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~ 272 (413)
.-+.+++.|-.|++++|.+. .+|.....+..|++|.+++|++...--..+..+++|++|.+++..- ...+|..+.
T Consensus 144 ---~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 144 ---SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred ---hHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 12345555556666666654 4555555556666666666655322222233444555555555432 233444455
Q ss_pred cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333 273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352 (413)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 352 (413)
.+.+|..++++.|.+. ..|..+-.+++|+.|+|++|.++ +.......-.+|++|+++.|.++. .+ + ++..++.|+
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP-~-avcKL~kL~ 294 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LP-D-AVCKLTKLT 294 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-ch-H-HHhhhHHHH
Confidence 5555555555555544 34444445555555555555554 222222233445555555555442 12 1 444445555
Q ss_pred eeeccCccccc--cce----------------eeecccccc-ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCC
Q 048333 353 ALDISLNRSSV--LTK----------------ATFDATTDT-TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNR 412 (413)
Q Consensus 353 ~L~l~~~~i~~--l~~----------------~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~ 412 (413)
.|.+.+|++.- ++. ...-+|..+ .|..|+.|.++.|++..+|..+.-++.|+.||+..|+
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence 55555544210 000 011122223 5677777777777777777777777777777777664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=4.1e-28 Score=222.92 Aligned_cols=316 Identities=24% Similarity=0.331 Sum_probs=244.6
Q ss_pred cccccccceeeccccCCCCCCCCccc---cCcCccccCC---cchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCc
Q 048333 65 LFKLVHLKWLNLALNDFNSSEIPPEI---INLSRLELQK---PSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138 (413)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~---~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 138 (413)
.+.+|-++-+|+++|++++...|..+ .+++-|+++. ..+|+-++.+.+|++|.++.|++.. +-..++.++.|+
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLR 81 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhH
Confidence 45678889999999999987788654 4555566664 4556778888888999888888763 344567788888
Q ss_pred EEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCc
Q 048333 139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE 218 (413)
Q Consensus 139 ~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 218 (413)
.+.++.|++.. ..+|..+..+..|..|++++|++. +.|..+...+++-.|++++|.+. .
T Consensus 82 sv~~R~N~LKn----------sGiP~diF~l~dLt~lDLShNqL~----------EvP~~LE~AKn~iVLNLS~N~Ie-t 140 (1255)
T KOG0444|consen 82 SVIVRDNNLKN----------SGIPTDIFRLKDLTILDLSHNQLR----------EVPTNLEYAKNSIVLNLSYNNIE-T 140 (1255)
T ss_pred HHhhhcccccc----------CCCCchhcccccceeeecchhhhh----------hcchhhhhhcCcEEEEcccCccc-c
Confidence 88888888765 467888888888999999999887 46778888888888999988886 4
Q ss_pred ch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccC-Cccccccc
Q 048333 219 LP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS-GDLLGSIG 296 (413)
Q Consensus 219 ~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~ 296 (413)
+| ..+.++..|-.|++++|.+. .+|..+..+.+|++|.+++|.+.-.....+..+.+|+.|.++++.-+ +.+|..+.
T Consensus 141 IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 55 44567778888889888886 57777888888999999888774444445666777888888887432 35677777
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccc
Q 048333 297 NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTT 376 (413)
Q Consensus 297 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~ 376 (413)
.+.+|..++++.|.+. .+|+.+..+++|+.|++++|.++.... ....+.+|++|++|.|+++.++.... .
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQLt~LP~avc------K 289 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQLTVLPDAVC------K 289 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccchhccchHHHh------h
Confidence 8888999999888886 788888889999999999998874333 44566788999999998655544333 5
Q ss_pred cccceeeeccCCCCC--CcchHhhcCCCCcEEeCCCCCC
Q 048333 377 SQKIQYRGLRSCNLT--KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 377 ~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i 413 (413)
+++|+.|.+.+|+++ .+|..++++-+|+.+...+|.+
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 677999999999887 8999999999998888887753
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.3e-21 Score=204.18 Aligned_cols=330 Identities=22% Similarity=0.241 Sum_probs=165.9
Q ss_pred CCceEEEecCCCccccccCCccccccccccceeeccccCCCC-----CCCCcccc----CcCccccCC---cchhhhhhc
Q 048333 42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS-----SEIPPEII----NLSRLELQK---PSFENLFEK 109 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~----~L~~L~l~~---~~i~~~~~~ 109 (413)
..+++.+.+....+........+|..+++|+.|.+..+.+.. ..+|..+. +|+.|.+.. ..+|..+ .
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~ 609 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-R 609 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-C
Confidence 345666666544443332333367888888888886653221 01333222 344444443 2333333 3
Q ss_pred CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
+.+|++|+++++.+. .++..+..+++|++|+++++... ..+| .+..+++|+.|++++|....
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l-----------~~ip-~ls~l~~Le~L~L~~c~~L~----- 671 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNL-----------KEIP-DLSMATNLETLKLSDCSSLV----- 671 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCc-----------CcCC-ccccCCcccEEEecCCCCcc-----
Confidence 467777777777665 45555666777777777765432 2333 25566777777777664321
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 269 (413)
.+|..+..+++|+.|++++|.....+|... .+++|+.|++++|.....+|.. ..+|+.|++.++.+ ..+|.
T Consensus 672 ----~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~ 742 (1153)
T PLN03210 672 ----ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPS 742 (1153)
T ss_pred ----ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccc
Confidence 355666667777777777665444555433 5666777777666543333322 24566666666654 33333
Q ss_pred hhccCCCCCeEecCCcccCC-------cccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechh
Q 048333 270 SIGNFTRLQFLFLGFNNFSG-------DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD 342 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 342 (413)
.+ .+++|+.|.+..+.... ..+......++|+.|++++|.....+|..+..+++|+.|++++|.....++.
T Consensus 743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~- 820 (1153)
T PLN03210 743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT- 820 (1153)
T ss_pred cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-
Confidence 22 34444444444322110 0000111234555555555554444555555555555555555543333331
Q ss_pred HhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCC
Q 048333 343 VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN 411 (413)
Q Consensus 343 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 411 (413)
..++++|++|++++|. .....+. ..++|++|++++|.++.+|..+..+++|+.|++++|
T Consensus 821 --~~~L~sL~~L~Ls~c~------~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 821 --GINLESLESLDLSGCS------RLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --CCCccccCEEECCCCC------ccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence 1144555555555543 1111111 123444444444444444444444444444444443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=3.1e-25 Score=193.96 Aligned_cols=360 Identities=25% Similarity=0.331 Sum_probs=202.1
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCc---cccCC---cchhhhhhcCCCCc
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSR---LELQK---PSFENLFEKLSNLK 114 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~---L~l~~---~~i~~~~~~~~~L~ 114 (413)
....++.+++.++.+. ..++ +++.+..++.++.+.|++.. +|++++++.. |.+.. ..+++.++.+..|+
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~--aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPA--AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred cccceeEEEeccchhh-hCCH--HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 4456778888887765 3444 67777777777777766552 5555543333 22221 12233344444444
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhh-----------hcccCCCccccCCCCccEEECCCCccc
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLI-----------QISGRIPSSLGNLSKLLHLDLSLNELQ 183 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----------~~~~~~~~~l~~~~~L~~L~l~~~~i~ 183 (413)
.++-.+|++. ..|..+.++.+|..+++.++++..++..-+. ..-+.+|..++.+.+|..|++..|.+.
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence 4444444443 2333333333333333333333322110000 011345555555555555555555554
Q ss_pred cccccc-------------ccccccccc-ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCC
Q 048333 184 GEAASF-------------RCFGELPIS-MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN 249 (413)
Q Consensus 184 ~~~~~~-------------~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 249 (413)
... .| .....+|.. ...++++..||+..|.+. ..|+.+..+.+|..|++++|.++ .+|..+++
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 321 11 001123332 336677777888888775 67777777888888888888877 57777887
Q ss_pred CCCCcEEEecCCccccccchh-----------------------------------------hccCCCCCeEecCCcccC
Q 048333 250 FSSLKLLNLRSCGFWSKVPHS-----------------------------------------IGNFTRLQFLFLGFNNFS 288 (413)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~-----------------------------------------~~~~~~L~~L~l~~~~~~ 288 (413)
+ +|+.|.+.||.+.+.-.+. ...+.+.+.|++++-.++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 7888887777542110000 011123344444444443
Q ss_pred CcccccccC--CCCCcEEEccCCccc-----------------------ccccccccCCCCCCEEECCCCcCcceechhH
Q 048333 289 GDLLGSIGN--LRSLEVIYIAKCNFS-----------------------GQITSSLRNLTQLVVLDMAQNSYGGTVELDV 343 (413)
Q Consensus 289 ~~~~~~l~~--~~~L~~L~L~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 343 (413)
......|.. -.-...+++++|++. +.++..+..+++|..|++++|.+. ..|.
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~-- 452 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE-- 452 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch--
Confidence 322222211 112444555555432 234445566788888888887665 3442
Q ss_pred hhhcccCCCeeeccCccccccce----------------eeeccccc-c-ccccceeeeccCCCCCCcchHhhcCCCCcE
Q 048333 344 LLTSWKNLEALDISLNRSSVLTK----------------ATFDATTD-T-TSQKIQYRGLRSCNLTKFPNFLENQNHLVI 405 (413)
Q Consensus 344 ~~~~~~~L~~L~l~~~~i~~l~~----------------~~~~~~~~-~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 405 (413)
.+..+-.|+.||++.|.+..++. ..+.++.. . .+.+|..|++.+|.+..+|..++++.+|++
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeE
Confidence 45556668888888888766653 12222222 2 688999999999999999999999999999
Q ss_pred EeCCCCCC
Q 048333 406 LNLSDNRI 413 (413)
Q Consensus 406 L~l~~n~i 413 (413)
|+++||+|
T Consensus 533 LeL~gNpf 540 (565)
T KOG0472|consen 533 LELDGNPF 540 (565)
T ss_pred EEecCCcc
Confidence 99999986
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.5e-20 Score=198.19 Aligned_cols=329 Identities=24% Similarity=0.259 Sum_probs=223.1
Q ss_pred CCCceEEEecCCCccc------cccCCcccccccc-ccceeeccccCCCCCCCCcc--ccCcCccccCCcchhh---hhh
Q 048333 41 NTGHVIKLNLSHGCLF------GSINSSSSLFKLV-HLKWLNLALNDFNSSEIPPE--IINLSRLELQKPSFEN---LFE 108 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~---~~~ 108 (413)
...+++.|.+..+... ...+. .+..+| +|+.|.+.++.+.. +|.. ..+|+.|++..+.+.. .+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~--~~~~lp~~Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPE--GFDYLPPKLRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCc--chhhcCcccEEEEecCCCCCC--CCCcCCccCCcEEECcCccccccccccc
Confidence 3456677766544221 12222 455554 58999988876543 4443 3577777777655543 366
Q ss_pred cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
.+++|++|+++++.....+|. +..+++|++|++++|... ..+|..+.++++|+.|++++|..-.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-----------~~lp~si~~L~~L~~L~L~~c~~L~---- 695 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-----------VELPSSIQYLNKLEDLDMSRCENLE---- 695 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-----------cccchhhhccCCCCEEeCCCCCCcC----
Confidence 789999999988765456665 778899999999998754 4678888999999999999874322
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccc----
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW---- 264 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---- 264 (413)
.+|..+ ++++|+.|++++|.....+|.. ..+|+.|+++++.+. .+|..+ .+++|+.|.+.++...
T Consensus 696 -----~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 696 -----ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred -----ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc
Confidence 245444 6788999999998765555542 457889999888875 455544 4677777777654321
Q ss_pred ---cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceech
Q 048333 265 ---SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVEL 341 (413)
Q Consensus 265 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 341 (413)
...+.....+++|+.|++++|......|..++.+++|+.|++.+|...+.+|... .+++|+.|++++|......+
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p- 842 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP- 842 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-
Confidence 1111223345678888888886655677778888888888888876554555544 67888888888876543333
Q ss_pred hHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCC-CCCCcchHhhcCCCCcEEeCCCCC
Q 048333 342 DVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC-NLTKFPNFLENQNHLVILNLSDNR 412 (413)
Q Consensus 342 ~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~n~ 412 (413)
....+|+.|++++|.++.++.... .+++|+.|++++| .+..+|..+..+++|+.+++++|.
T Consensus 843 ----~~~~nL~~L~Ls~n~i~~iP~si~------~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 ----DISTNISDLNLSRTGIEEVPWWIE------KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ----ccccccCEeECCCCCCccChHHHh------cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 123578888888887655432211 5677888888886 455777777778888888888774
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.4e-23 Score=183.61 Aligned_cols=259 Identities=25% Similarity=0.295 Sum_probs=178.0
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
.+.++.+.+||+++|+++ +.|+.+..+.+|++|++++|.++ .+|.+++++ +|+.|.+.||++....
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is------------~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS------------SLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc------------cCCcccccc-eeeehhhcCCchHHHH
Confidence 346777788888888776 56777777777888888887776 466777777 8888888887765332
Q ss_pred ccc----------------------------ccccccc----ccccCCCCccEEeCCCCcCCCcchhhhhCCCC---CCE
Q 048333 187 ASF----------------------------RCFGELP----ISMGNLGSLKELDLSQNGFFGELPTSIRNLFS---LEK 231 (413)
Q Consensus 187 ~~~----------------------------~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~---L~~ 231 (413)
.++ ...+..+ .....+.+.+.|+++.-.++ .+|+....... ...
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEE
Confidence 211 0000000 11122345566666666654 44443333222 566
Q ss_pred EEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcc
Q 048333 232 LDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311 (413)
Q Consensus 232 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 311 (413)
.+++.|++. .+|..+..+..+++..+..++..+..+..++.+++|..|++++|.+. ..|..++.+..|+.++++.|++
T Consensus 393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred EecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc
Confidence 777777765 45655544444433333333344677888888999999999988876 5777888888899999999988
Q ss_pred cccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333 312 SGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
. ..|..+.....++.+-.++|.+....+ . .+.++.+|.+||+.+|.+..+++..+ .+.+|++|++.+|.+.
T Consensus 471 r-~lP~~~y~lq~lEtllas~nqi~~vd~-~-~l~nm~nL~tLDL~nNdlq~IPp~Lg------nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 471 R-MLPECLYELQTLETLLASNNQIGSVDP-S-GLKNMRNLTTLDLQNNDLQQIPPILG------NMTNLRHLELDGNPFR 541 (565)
T ss_pred c-cchHHHhhHHHHHHHHhccccccccCh-H-HhhhhhhcceeccCCCchhhCChhhc------cccceeEEEecCCccC
Confidence 6 677777777777888888888875444 4 68899999999999999776666555 6788999999999988
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=3.7e-23 Score=198.27 Aligned_cols=203 Identities=25% Similarity=0.324 Sum_probs=129.6
Q ss_pred CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG 283 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (413)
+|+.++++++.+. .+|..+..+.+|+.+...+|.++ .+|..+....+|+.|.+..|.+ ..+|......++|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeeh
Confidence 5666666666664 45566777777888877777764 4555555555555555555554 3444444555556666655
Q ss_pred CcccCCcccc-----------------------cc--cCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce
Q 048333 284 FNNFSGDLLG-----------------------SI--GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT 338 (413)
Q Consensus 284 ~~~~~~~~~~-----------------------~l--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 338 (413)
.|.+...... .. ...+.|+.|.+.+|.+++.....+...++|+.|+|++|.+. .
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 5554421110 00 12356777777888888777777778888888888888775 3
Q ss_pred echhHhhhcccCCCeeeccCcccccccee----------------eeccccccccccceeeeccCCCCC--CcchHhhcC
Q 048333 339 VELDVLLTSWKNLEALDISLNRSSVLTKA----------------TFDATTDTTSQKIQYRGLRSCNLT--KFPNFLENQ 400 (413)
Q Consensus 339 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~----------------~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l 400 (413)
.+ +..+.+++.|+.|++|||+++.+++- ....|....++.|+.+|++.|+++ .+|.....
T Consensus 398 fp-as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~- 475 (1081)
T KOG0618|consen 398 FP-ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS- 475 (1081)
T ss_pred CC-HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-
Confidence 44 33777888888888888887776631 122332226778888888888877 44443332
Q ss_pred CCCcEEeCCCCC
Q 048333 401 NHLVILNLSDNR 412 (413)
Q Consensus 401 ~~L~~L~l~~n~ 412 (413)
|+|+.||++||.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 788888888885
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-22 Score=193.17 Aligned_cols=335 Identities=23% Similarity=0.277 Sum_probs=205.7
Q ss_pred eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333 45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID 124 (413)
Q Consensus 45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~ 124 (413)
++.+++..+.+.+.+.. .+..+.+ .||+.+|.+. ......+.+++.+....+.+....-.-++|+.|+...|.+.
T Consensus 158 ik~~~l~~n~l~~~~~~--~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLI--DIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT 232 (1081)
T ss_pred chhhhhhhhhcccchhc--chhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce
Confidence 66666666666655555 5555555 5777777665 21223344455444444444444444455666666665554
Q ss_pred CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc-------------cc
Q 048333 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF-------------RC 191 (413)
Q Consensus 125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-------------~~ 191 (413)
...+. ..-.+|+++++++++++ .+|..++.+++|+.+++.+|.++.....+ .-
T Consensus 233 ~~~~~--p~p~nl~~~dis~n~l~------------~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 233 TLDVH--PVPLNLQYLDISHNNLS------------NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred eeccc--cccccceeeecchhhhh------------cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 21111 11245666666666664 34555666666666666666664321100 00
Q ss_pred cccccccccCCCCccEEeCCCCcCCCcchh-hhhCCC-CCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333 192 FGELPISMGNLGSLKELDLSQNGFFGELPT-SIRNLF-SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269 (413)
Q Consensus 192 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 269 (413)
...+|......+.|++|++..|.+. ..|+ .+.... +|..+..+.+.+.......=...+.|+.|.+.+|.+++....
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 1134444444555555555555554 2222 222222 144444444443311111111235678888889888777667
Q ss_pred hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK 349 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 349 (413)
.+.++++|+.|++++|++.......+.+++.|++|+++||.++ .+|..+..++.|++|...+|.+.. .| .+..++
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP---e~~~l~ 452 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP---ELAQLP 452 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch---hhhhcC
Confidence 7889999999999999998766777888999999999999998 777888899999999999999873 44 577899
Q ss_pred CCCeeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhhcCCCCcEEeCC
Q 048333 350 NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLS 409 (413)
Q Consensus 350 ~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~ 409 (413)
+|+.+|++.|.++.+. .+.....+.|++|++++|.-. .-...+..++++...+++
T Consensus 453 qL~~lDlS~N~L~~~~-----l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVT-----LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cceEEecccchhhhhh-----hhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 9999999999975532 111112378999999999744 223445556666666554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.4e-18 Score=169.64 Aligned_cols=236 Identities=22% Similarity=0.201 Sum_probs=165.0
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
++|+.|++++|.++. +|. ..++|++|++++|.++. +|.. .++|+.|++++|.++.
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts------------LP~l---p~sL~~L~Ls~N~L~~------ 276 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS------------LPVL---PPGLLELSIFSNPLTH------ 276 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc------------ccCc---ccccceeeccCCchhh------
Confidence 478888888888763 554 25778888888887763 3321 3578888888887763
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
+|.. ...|+.|++++|.+. .+|. ..++|+.|++++|.+.. +|.. ..+|+.|.+++|.+. .+|.
T Consensus 277 ----Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~- 339 (788)
T PRK15387 277 ----LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT- 339 (788)
T ss_pred ----hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc-
Confidence 2322 246778888888776 3443 24678888888887763 3432 245777888888773 3443
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 350 (413)
...+|+.|++++|.+.. ++.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+.. .+ . ..++
T Consensus 340 --lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP-~----l~s~ 403 (788)
T PRK15387 340 --LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP-V----LPSE 403 (788)
T ss_pred --cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CC-C----cccC
Confidence 12478889998888874 3322 357888888888887 34432 3578889999988874 33 1 2357
Q ss_pred CCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
|+.|++++|.++.++.. +.+|+.|++++|+++.+|..+.++++|+.|++++|+|
T Consensus 404 L~~LdLS~N~LssIP~l---------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 404 LKELMVSGNRLTSLPML---------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCEEEccCCcCCCCCcc---------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 88999999987665431 2368889999999999998888899999999999875
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=3.6e-20 Score=162.14 Aligned_cols=257 Identities=21% Similarity=0.221 Sum_probs=176.8
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCcc---c-cCCcchhh----hhhcCCC
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRL---E-LQKPSFEN----LFEKLSN 112 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L---~-l~~~~i~~----~~~~~~~ 112 (413)
-+...+.++|..|.|+..-+. +|+++++||.||++.|.++.+ -|+.+..|..| - +.++.|.+ .|+++..
T Consensus 65 LP~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CCCcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 455789999999999866655 999999999999999999887 56666655554 2 33466644 4888999
Q ss_pred CcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc---cc
Q 048333 113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA---SF 189 (413)
Q Consensus 113 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~---~~ 189 (413)
|+.|.+.-|.+.-...+.|..+++|..|.+.+|.+..++ -..+..+..++.+++..|.+-..-. ..
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-----------~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-----------KGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-----------cccccchhccchHhhhcCccccccccchhh
Confidence 999999988887667778889999999999999876322 1256667777777776655211000 00
Q ss_pred cccccccccccCCCC----------------------ccEE---eCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccC
Q 048333 190 RCFGELPISMGNLGS----------------------LKEL---DLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEF 243 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~----------------------L~~L---~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 243 (413)
......|..++..+. ++.+ -.+.+......| .++..+++|++|++++|.++.+.
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 000011111111111 1111 111222222333 45777888888888888888777
Q ss_pred CcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcc
Q 048333 244 PWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311 (413)
Q Consensus 244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 311 (413)
+.+|....++++|.+..|++.......|.++..|++|++++|+++...+.+|....+|.+|++-+|.+
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77888888888888888887555556678888888888888888877778888888888888876654
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2e-19 Score=165.21 Aligned_cols=195 Identities=23% Similarity=0.286 Sum_probs=85.4
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCC------CcCccccCCCCC
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDS------TIPHNIKNLSSL 137 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L 137 (413)
.+..+++|+.|+++++.++... ...++..+...+++++++++++.+.+ .++..+..+++|
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~--------------~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 83 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEA--------------AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHH--------------HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence 3444555666666665543310 01223334455566666666555431 122334445566
Q ss_pred cEEEccCCcccccchhhhhhcccCCCccccCC---CCccEEECCCCccccccccccccccccccccCC-CCccEEeCCCC
Q 048333 138 TFVSLRNCELQAMCSFFLIQISGRIPSSLGNL---SKLLHLDLSLNELQGEAASFRCFGELPISMGNL-GSLKELDLSQN 213 (413)
Q Consensus 138 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~ 213 (413)
+.|++++|.+.. ..+..+..+ ++|++|++++|.+++.... .+...+..+ ++|++|++++|
T Consensus 84 ~~L~l~~~~~~~-----------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-----~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 84 QELDLSDNALGP-----------DGCGVLESLLRSSSLQELKLNNNGLGDRGLR-----LLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred eEEEccCCCCCh-----------hHHHHHHHHhccCcccEEEeeCCccchHHHH-----HHHHHHHhCCCCceEEEcCCC
Confidence 666666655542 111111111 3366666666555432110 112223334 55566666655
Q ss_pred cCCCc----chhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCCccccc----cchhhccCCCCCeEe
Q 048333 214 GFFGE----LPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLF 281 (413)
Q Consensus 214 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ 281 (413)
.+... ++..+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.+. ....+..+++|++|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 55421 222334444555555555544321 111222334555555555544221 122233444455555
Q ss_pred cCCcccC
Q 048333 282 LGFNNFS 288 (413)
Q Consensus 282 l~~~~~~ 288 (413)
+++|.+.
T Consensus 228 ls~n~l~ 234 (319)
T cd00116 228 LGDNNLT 234 (319)
T ss_pred cCCCcCc
Confidence 5555444
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=4.7e-19 Score=162.80 Aligned_cols=212 Identities=20% Similarity=0.197 Sum_probs=124.1
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCC---CCEEEccCCcCcc----cCCcccCCC-CCCcEEEecCCcccc----c
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFS---LEKLDLSFNKLSG----EFPWSTGNF-SSLKLLNLRSCGFWS----K 266 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~---L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~~~----~ 266 (413)
+..+++|+.|++++|.+....+..+..+.+ |+.|++++|.+.. .+...+..+ ++|+.|++++|.+.+ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334455555555555544333333333322 5666665555431 111223334 666777777766542 2
Q ss_pred cchhhccCCCCCeEecCCcccCCcc----cccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcce
Q 048333 267 VPHSIGNFTRLQFLFLGFNNFSGDL----LGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGT 338 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 338 (413)
....+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+.+. +...+..+++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 2334556667788888777766422 22334456888888888877532 334556678888999988887742
Q ss_pred echhHhhhc----ccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCC-----cchHhhcC-CCCcEEe
Q 048333 339 VELDVLLTS----WKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTK-----FPNFLENQ-NHLVILN 407 (413)
Q Consensus 339 ~~~~~~~~~----~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-----l~~~~~~l-~~L~~L~ 407 (413)
.. ...... .+.|++|++++|.+++.+. ....... .+++|+++++++|.++. +...+... +.|+.|+
T Consensus 237 ~~-~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 237 GA-AALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HH-HHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 22 212222 3689999999988653221 1111112 45789999999998882 44455555 7899999
Q ss_pred CCCCCC
Q 048333 408 LSDNRI 413 (413)
Q Consensus 408 l~~n~i 413 (413)
+.+|++
T Consensus 314 ~~~~~~ 319 (319)
T cd00116 314 VKDDSF 319 (319)
T ss_pred cCCCCC
Confidence 998875
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=3.2e-17 Score=162.65 Aligned_cols=246 Identities=24% Similarity=0.344 Sum_probs=180.7
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
.+...|+++++.++ .+|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|.++.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lts------------LP~~l~--~nL~~L~Ls~N~Lts------ 234 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELKS------------LPENLQ--GNIKTLYANSNQLTS------ 234 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCc------------CChhhc--cCCCEEECCCCcccc------
Confidence 46788999988887 466544 3579999999998873 444443 589999999998874
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
+|..+. ..|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..
T Consensus 235 ----LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~ 301 (754)
T PRK15370 235 ----IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAH 301 (754)
T ss_pred ----CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCccc
Confidence 343332 47899999999886 5666553 47999999999887 4565443 58999999999874 34443
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 350 (413)
+. ++|+.|++++|.+.. ++..+ .++|+.|++++|.++. +|..+ +++|+.|++++|.+.. ++ . .+ .+.
T Consensus 302 lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP-~-~l--p~~ 368 (754)
T PRK15370 302 LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LP-E-TL--PPT 368 (754)
T ss_pred ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CC-h-hh--cCC
Confidence 32 478899999998874 34333 3689999999999874 55444 3789999999998873 33 1 12 368
Q ss_pred CCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhh----cCCCCcEEeCCCCCC
Q 048333 351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE----NQNHLVILNLSDNRI 413 (413)
Q Consensus 351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~----~l~~L~~L~l~~n~i 413 (413)
|++|++++|.++.+++.. ..+|+.|++++|+++.+|..+. .++++..|++.+|+|
T Consensus 369 L~~LdLs~N~Lt~LP~~l--------~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 369 ITTLDVSRNALTNLPENL--------PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCEEECCCCcCCCCCHhH--------HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 999999999977654322 2369999999999997776544 458889999999985
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=2.7e-16 Score=155.30 Aligned_cols=257 Identities=22% Similarity=0.207 Sum_probs=117.5
Q ss_pred ceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccC
Q 048333 44 HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSI 123 (413)
Q Consensus 44 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~ 123 (413)
.-..|+++.+.++ .+|. .+. ++|+.|+++.|.++. +|.. +++|++|++++|.+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~l--------------------p~~Lk~LdLs~N~L 254 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPAL--------------------PPELRTLEVSGNQL 254 (788)
T ss_pred CCcEEEcCCCCCC-cCCc--chh--cCCCEEEccCCcCCC--CCCC--------------------CCCCcEEEecCCcc
Confidence 3456788888776 3444 443 478888888887764 4433 34555555555555
Q ss_pred CCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCC
Q 048333 124 DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLG 203 (413)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~ 203 (413)
+. +|.. .++|++|++++|.+.. +|.. ..+|+.|++++|.++. +|. ..+
T Consensus 255 ts-LP~l---p~sL~~L~Ls~N~L~~------------Lp~l---p~~L~~L~Ls~N~Lt~----------LP~---~p~ 302 (788)
T PRK15387 255 TS-LPVL---PPGLLELSIFSNPLTH------------LPAL---PSGLCKLWIFGNQLTS----------LPV---LPP 302 (788)
T ss_pred Cc-ccCc---ccccceeeccCCchhh------------hhhc---hhhcCEEECcCCcccc----------ccc---ccc
Confidence 42 3321 2445555555555432 1111 1344455555555442 221 123
Q ss_pred CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG 283 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (413)
+|+.|++++|.+.. +|.. ..+|+.|.+++|.+. .+|. ...+|+.|++++|.+. .+|.. .++|+.|+++
T Consensus 303 ~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls 370 (788)
T PRK15387 303 GLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAY 370 (788)
T ss_pred ccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---cccccceEecCCCccC-CCCCC---Ccccceehhh
Confidence 45555555554432 2221 123444555555443 2222 1134555555555542 22221 2344455555
Q ss_pred CcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccc
Q 048333 284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSV 363 (413)
Q Consensus 284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 363 (413)
+|.+.. ++.. .++|+.|++++|.++ .+|.. .++|+.|++++|.+.+ ++ . ....|+.|++++|.++.
T Consensus 371 ~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP-~----l~~~L~~L~Ls~NqLt~ 436 (788)
T PRK15387 371 NNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LP-M----LPSGLLSLSVYRNQLTR 436 (788)
T ss_pred cccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CC-c----chhhhhhhhhccCcccc
Confidence 554442 2211 234555555555554 22221 2345555555555542 22 0 11234555555555443
Q ss_pred cceeeeccccccccccceeeeccCCCCC
Q 048333 364 LTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 364 l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
++.... .+++|+.|++++|.++
T Consensus 437 LP~sl~------~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 437 LPESLI------HLSSETTVNLEGNPLS 458 (788)
T ss_pred cChHHh------hccCCCeEECCCCCCC
Confidence 322111 3344555555555554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=6.5e-19 Score=154.34 Aligned_cols=253 Identities=19% Similarity=0.193 Sum_probs=144.6
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC-Cccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL-NELQGEAASF 189 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~ 189 (413)
+.-..|+|..|+++...+.+|+.+++|+.|++++|.|+ ...|..|.+++.|..|-+.+ |+|++..
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-----------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~--- 132 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-----------FIAPDAFKGLASLLSLVLYGNNKITDLP--- 132 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-----------hcChHhhhhhHhhhHHHhhcCCchhhhh---
Confidence 34566677777776666666777777777777777766 34566677777766666655 6666542
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccc-----
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW----- 264 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----- 264 (413)
...|.++..++.|.+.-|++.-....++..+++|..|.+.+|.+...-...+..+..++.+.+..+.+.
T Consensus 133 ------k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 133 ------KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred ------hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 234666666777777666665445566777777777777666654332334555556666655544310
Q ss_pred -------cccchhhccCCCCCeEecCCcccC-------------------------C-cccccccCCCCCcEEEccCCcc
Q 048333 265 -------SKVPHSIGNFTRLQFLFLGFNNFS-------------------------G-DLLGSIGNLRSLEVIYIAKCNF 311 (413)
Q Consensus 265 -------~~~~~~~~~~~~L~~L~l~~~~~~-------------------------~-~~~~~l~~~~~L~~L~L~~~~~ 311 (413)
...+..+++........+.+.++. . -....|..+++|+.|++++|.+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 111222222221111111111111 1 1122355567777777777777
Q ss_pred cccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333 312 SGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL 390 (413)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 390 (413)
++....+|.+..++++|.+..|++.. +. ..+|.++..|++|++.+|+|+.+....++. ..+|..|++-.|.+
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~-v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-----~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEF-VS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQT-----LFSLSTLNLLSNPF 358 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHH-HH-HHhhhccccceeeeecCCeeEEEecccccc-----cceeeeeehccCcc
Confidence 66666677777777777777776652 22 226667777777777777766555444443 33566666655544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=7.5e-16 Score=152.94 Aligned_cols=230 Identities=21% Similarity=0.308 Sum_probs=147.9
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
+.|+.|++++|.++ .+|..+ .++|++|++++|.++. +|..+. ++|+.|++++|.+..
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lts------------LP~~l~--~~L~~L~Ls~N~L~~------ 255 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLTS------------IPATLP--DTIQEMELSINRITE------ 255 (754)
T ss_pred cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCcccc------------CChhhh--ccccEEECcCCccCc------
Confidence 57888888888877 455544 3578888888887763 444333 468888888888763
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..
T Consensus 256 ----LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~ 322 (754)
T PRK15370 256 ----LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPET 322 (754)
T ss_pred ----CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcc
Confidence 343332 46888888888776 4555432 47888888888776 3444332 46778888887774 34432
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 350 (413)
+ .++|+.|++++|.+.. ++..+ .++|+.|++++|+++ .+|..+ .++|+.|++++|.+..... . +. ..
T Consensus 323 l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~-~--l~--~s 389 (754)
T PRK15370 323 L--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPE-N--LP--AA 389 (754)
T ss_pred c--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCH-h--HH--HH
Confidence 2 3578888888887764 44333 268888888888876 445433 3678888888888764322 1 21 35
Q ss_pred CCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333 351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
|+.|++++|++..++........ ..+.+..+++.+|.++
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~--~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRG--EGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhh--cCCCccEEEeeCCCcc
Confidence 78888888886655432111111 3466778888888775
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=1.9e-16 Score=123.60 Aligned_cols=115 Identities=30% Similarity=0.457 Sum_probs=51.3
Q ss_pred ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCc-ccCCcccCCCCCCcEEEecCCccccccchhhcc
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS-GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN 273 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (413)
+|..++++++|+.|++.-|.+. ..|..|+.+|-|+.|++.+|.+. ..+|..|..+..|+.|.++++.+ +.+|..+.+
T Consensus 71 lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~ 148 (264)
T KOG0617|consen 71 LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGK 148 (264)
T ss_pred cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhh
Confidence 3344444444444444444332 34444444444444444444432 12444444444444444444444 344444444
Q ss_pred CCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333 274 FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
+.+|+.|.+.+|.+. ..+..++.+..|++|++.+|+++
T Consensus 149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 444444444444443 23444444445555555555444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=5.4e-16 Score=121.09 Aligned_cols=134 Identities=29% Similarity=0.481 Sum_probs=79.1
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+..+.+|+.|++.+|+++ .+|..++.+++|+.|++.-|.+. .+|..|+.+|.|+.|++..|.+...
T Consensus 52 ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------------~lprgfgs~p~levldltynnl~e~- 117 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------------ILPRGFGSFPALEVLDLTYNNLNEN- 117 (264)
T ss_pred HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh------------cCccccCCCchhhhhhccccccccc-
Confidence 445566666666666665 45555666666666666655553 4566666666666666666665543
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 263 (413)
.+|..|..++.|+.|+++.|.+. .+|...+++.+|+.|.+..|.+. .+|..++.+..|++|++.++++
T Consensus 118 -------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 118 -------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred -------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 35555556666666666666553 45555566666666666655554 3555555555555566655555
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.44 E-value=1.2e-14 Score=126.02 Aligned_cols=138 Identities=19% Similarity=0.282 Sum_probs=69.7
Q ss_pred CCCCCeEecCCcccCCcc----cccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcce--echhH
Q 048333 274 FTRLQFLFLGFNNFSGDL----LGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGT--VELDV 343 (413)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~ 343 (413)
-+.|+++....|++.+.. ...+...+.|+.+.+..|.+... ....+..|++|+.|||.+|.++.. ..+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 345566666655554322 22233455666666666555421 223455566666666666655522 12223
Q ss_pred hhhcccCCCeeeccCccccccceeeecccccc--ccccceeeeccCCCCC-----CcchHhhcCCCCcEEeCCCCCC
Q 048333 344 LLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGLRSCNLT-----KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 344 ~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i 413 (413)
.+..+++|+.|++++|.+++-+... ....+ ..|+|+++.+.+|.++ .+-.++...|.|..|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a--~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIA--FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHH--HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4555666666666666654332111 11111 3456666666666665 2234444566666666666653
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=1.8e-14 Score=124.97 Aligned_cols=208 Identities=23% Similarity=0.246 Sum_probs=127.4
Q ss_pred CCCceEEEecCCCcccccc--CCccccccccccceeeccccCCCCC---CCCccccCcCccccCCcchhhhhhcCCCCcE
Q 048333 41 NTGHVIKLNLSHGCLFGSI--NSSSSLFKLVHLKWLNLALNDFNSS---EIPPEIINLSRLELQKPSFENLFEKLSNLKT 115 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~ 115 (413)
....+++++|++|.+...- .....+...++|+..+++.- +++. ++|+.+ ..+.+++.++|+|++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L----------~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEAL----------KMLSKALLGCPKLQK 96 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHH----------HHHHHHHhcCCceeE
Confidence 4468999999999986321 11125667788888888753 2222 233333 223556778899999
Q ss_pred EEcCCccCCCCcC----ccccCCCCCcEEEccCCcccccchhhhhh-ccc-CCCccccCCCCccEEECCCCccccccccc
Q 048333 116 LNLGDVSIDSTIP----HNIKNLSSLTFVSLRNCELQAMCSFFLIQ-ISG-RIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 116 L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
|+||+|.+....+ ..+.++..|++|.+.+|.+.......+.. +.. ....-.+.-+.|+.+..+.|++.+..+.
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~- 175 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT- 175 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-
Confidence 9999999864333 34467899999999999876321100000 000 0112234567888888888887765432
Q ss_pred cccccccccccCCCCccEEeCCCCcCCC----cchhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCC
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFG----ELPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSC 261 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~ 261 (413)
.+...+...+.|+.+.+++|.+.. .+..++..+++|++|++.+|.++.. +...+..+++|+.|++++|
T Consensus 176 ----~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 176 ----ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ----HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 244556667778888888777642 2334566777777777777766421 3334445556666666666
Q ss_pred ccc
Q 048333 262 GFW 264 (413)
Q Consensus 262 ~~~ 264 (413)
.+.
T Consensus 252 ll~ 254 (382)
T KOG1909|consen 252 LLE 254 (382)
T ss_pred ccc
Confidence 553
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-13 Score=123.09 Aligned_cols=212 Identities=25% Similarity=0.244 Sum_probs=124.2
Q ss_pred cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCC--cchhhhhCCCCCCEEEccCCcCcccCC
Q 048333 167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFG--ELPTSIRNLFSLEKLDLSFNKLSGEFP 244 (413)
Q Consensus 167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~ 244 (413)
.++.+|+.+.+.++.+..... -.....|++++.|++++|-+.. .+......+|+|+.|+++.|.+.....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~--------~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI--------EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hhHHhhhheeecCccccccch--------hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 467888998898887764311 1346678899999999987653 244566788999999999887752211
Q ss_pred c-ccCCCCCCcEEEecCCcccc-ccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc-cccccC
Q 048333 245 W-STGNFSSLKLLNLRSCGFWS-KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI-TSSLRN 321 (413)
Q Consensus 245 ~-~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~ 321 (413)
. .-..+++|+.|.+++|++.. .+......+|+|+.|.+..|...-......+.+..|++|+|++|++.+.. ......
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 1 11245677888888887742 23333456677777777777421111122233566777777777665221 234455
Q ss_pred CCCCCEEECCCCcCcceechh----HhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC
Q 048333 322 LTQLVVLDMAQNSYGGTVELD----VLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT 391 (413)
Q Consensus 322 ~~~L~~L~l~~n~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~ 391 (413)
++.|..|+++.+.+.+....+ .-...+++|++|++..|+|... .....+ .+++|+.|.+..+.++
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-----~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-----RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-----cccchhhccchhhhhhccccccc
Confidence 666777777666665322211 0134456666666666664321 112222 4556666666655554
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=3.8e-12 Score=108.56 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=111.8
Q ss_pred ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC---ccccccchhh
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC---GFWSKVPHSI 271 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~~~~~~~ 271 (413)
+|..+.-+++|+.+.+++|.-. .+......-|.|+++.+.+..... .+. +.....+ .+.++- ...+.....+
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~--~D~~~~E~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS-LLPETIL--ADPSGSEPSTSNGSALVSA 280 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc-ccchhhh--cCccCCCCCccCCceEEec
Confidence 4445556677777777776543 222222233567776665443321 111 1100111 111110 1112222333
Q ss_pred ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCC
Q 048333 272 GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNL 351 (413)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 351 (413)
..++-|+.+++++|.+. .+.....-.|.++.|+++.|.++ .+. .+..+++|+.||+++|.+.....| -..+.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGW---HLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhh---HhhhcCE
Confidence 44556777777777776 34555556677777777777775 222 256677777777777776654443 2455567
Q ss_pred CeeeccCccccccceeeeccccccccccceeeeccCCCCCCc--chHhhcCCCCcEEeCCCCCC
Q 048333 352 EALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF--PNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 352 ~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~l~~L~~L~l~~n~i 413 (413)
++|.+++|.|.++... ..+.+|..|++++|+|..+ ...++++|-|++|.+.+|+|
T Consensus 355 KtL~La~N~iE~LSGL-------~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 355 KTLKLAQNKIETLSGL-------RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeeehhhhhHhhhhhh-------HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 7777777775443211 1456677777777777633 34567777777777777764
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=1.9e-10 Score=114.09 Aligned_cols=132 Identities=25% Similarity=0.421 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCcccceEEeeCCC----CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcC
Q 048333 19 ASWKPEEGSVDCYSWDVVHCNKNT----GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLS 94 (413)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 94 (413)
..|+...|....|.|.|+.|.... ..++.|+|+++.+.+..+. .+..+++|+.|++++|.+.+. +
T Consensus 390 ~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-i-------- 458 (623)
T PLN03150 390 FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-I-------- 458 (623)
T ss_pred CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-C--------
Confidence 479642222233489999995321 2488899999988877777 788899999999998887654 3
Q ss_pred ccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCC-CCcc
Q 048333 95 RLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL-SKLL 173 (413)
Q Consensus 95 ~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~ 173 (413)
|..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|.+. +.+|..+... .++.
T Consensus 459 ---------P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~-----------g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 459 ---------PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-----------GRVPAALGGRLLHRA 518 (623)
T ss_pred ---------ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-----------ccCChHHhhccccCc
Confidence 345667888899999998888888888888888999999888877 5677766542 3556
Q ss_pred EEECCCCc
Q 048333 174 HLDLSLNE 181 (413)
Q Consensus 174 ~L~l~~~~ 181 (413)
.+++.+|.
T Consensus 519 ~l~~~~N~ 526 (623)
T PLN03150 519 SFNFTDNA 526 (623)
T ss_pred eEEecCCc
Confidence 66766664
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-11 Score=111.00 Aligned_cols=216 Identities=21% Similarity=0.215 Sum_probs=160.0
Q ss_pred cccccCCCCccEEeCCCCcCCCcch--hhhhCCCCCCEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccch-h
Q 048333 196 PISMGNLGSLKELDLSQNGFFGELP--TSIRNLFSLEKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPH-S 270 (413)
Q Consensus 196 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~ 270 (413)
...-+++.+|+++.+.++.+. ..+ .....|++++.|+++.|-+.. ........+|+|+.|+++.|.+...... .
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 334457789999999988875 333 356789999999999986642 2233446789999999999987432221 1
Q ss_pred hccCCCCCeEecCCcccCC-cccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333 271 IGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK 349 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 349 (413)
-..+++|+.|.++.|+++. .....+..+|+++.|.+..|.....-.....-+..|++|+|++|.+.+..... ....+|
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-KVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-cccccc
Confidence 2357899999999999874 33445567899999999999532232333445788999999999987655433 678899
Q ss_pred CCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcc--hHhhcCCCCcEEeCCCCCC
Q 048333 350 NLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFP--NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 350 ~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~i 413 (413)
.|+.|+++.|.+.++.....+...-. .+++|++|++..|++.+++ ..+..+++|+.|.+.+|.|
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 99999999999988765544443333 8899999999999997554 5577788999998888764
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.2e-11 Score=103.91 Aligned_cols=190 Identities=26% Similarity=0.240 Sum_probs=85.6
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhh------------cccCCCccccCCCCccE
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ------------ISGRIPSSLGNLSKLLH 174 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~L~~ 174 (413)
+..+++|..+.++.|.-.. +.+....=|.|+++.+....++..+...... ..|.....+..-..|+.
T Consensus 210 l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 4456666777776665432 2222223366777777665554432211110 00000011111234555
Q ss_pred EECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 048333 175 LDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK 254 (413)
Q Consensus 175 L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 254 (413)
+++++|.|+.. ..+..-.+.++.|++++|.+.. + ..+..+++|+.|++++|.++ .+..+-.++.+++
T Consensus 289 lDLS~N~I~~i----------DESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 289 LDLSGNLITQI----------DESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred ccccccchhhh----------hhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 55555555422 2233344555555555555531 1 22455555555555555544 2333333445555
Q ss_pred EEEecCCccccccchhhccCCCCCeEecCCcccCC-cccccccCCCCCcEEEccCCccc
Q 048333 255 LLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
+|.+.+|.+ +..+.+.++=+|..|++.+|++.. +-...++++|.|+.+.+.+|.+.
T Consensus 356 tL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 555555544 112233444445555555555432 12233444555555555555543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.2e-10 Score=94.96 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCCEEEccCCcCcccCCcccC-CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc-cCCCCCcEEE
Q 048333 228 SLEKLDLSFNKLSGEFPWSTG-NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI-GNLRSLEVIY 305 (413)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~ 305 (413)
++++|++.++.+... ..+. .+.+|+.|++++|.+.. + ..+..+++|+.|++++|.+.+. ...+ ..+|+|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 445555555554421 1122 23445555555554421 1 1244445555555555554432 1112 2344555555
Q ss_pred ccCCccccc-ccccccCCCCCCEEECCCCcCc
Q 048333 306 IAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 306 L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
+++|++.+. .-..+..+++|+.|++.+|++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555544321 1123334455555555555444
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=7.7e-11 Score=119.44 Aligned_cols=109 Identities=31% Similarity=0.474 Sum_probs=75.9
Q ss_pred hhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccc
Q 048333 106 LFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE 185 (413)
Q Consensus 106 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 185 (413)
+|..+|.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.+++.|.+|++..+.....
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~------------~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS------------HLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc------------ccchHHHHHHhhheecccccccccc
Confidence 4778899999999887766788888888999999999888875 6788888888888888887653321
Q ss_pred cccccccccccccccCCCCccEEeCCCCcCC--CcchhhhhCCCCCCEEEcc
Q 048333 186 AASFRCFGELPISMGNLGSLKELDLSQNGFF--GELPTSIRNLFSLEKLDLS 235 (413)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~ 235 (413)
.|.....+.+|++|.+...... ......+..+.+|+.+...
T Consensus 634 ---------~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 634 ---------IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ---------ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 2344555788888877655421 1222334455555555543
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=8.1e-12 Score=115.23 Aligned_cols=168 Identities=24% Similarity=0.333 Sum_probs=116.9
Q ss_pred EEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCc
Q 048333 231 KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN 310 (413)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 310 (413)
..+++.|.+. .+|..+..+..|+.+.+..|.+ ..+|..+..+..|++++++.|.+. ..+..++.+| |+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3455555554 4555555556666666666655 456666777777777888777776 4555555554 7777788888
Q ss_pred ccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333 311 FSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL 390 (413)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 390 (413)
++ ..|..++..+.|..|+.+.|.+.+... .+.++.+|+.|++..|.+.++++...+. .|..||++.|++
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~~lp~El~~L-------pLi~lDfScNki 223 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLEDLPEELCSL-------PLIRLDFSCNKI 223 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhhhCCHHHhCC-------ceeeeecccCce
Confidence 76 566666677788888888887764433 5677778888888888766655554432 377888888888
Q ss_pred CCcchHhhcCCCCcEEeCCCCCC
Q 048333 391 TKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 391 ~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
..+|..|.+++.|++|.|.+|++
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eecchhhhhhhhheeeeeccCCC
Confidence 88888888888888888888875
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=7.5e-10 Score=90.29 Aligned_cols=82 Identities=29% Similarity=0.304 Sum_probs=22.6
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhh-hCCCCCCEEEccCCcCccc-CCcccCCCCCCcEEEecCCccccc---cchhhcc
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGE-FPWSTGNFSSLKLLNLRSCGFWSK---VPHSIGN 273 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~ 273 (413)
+..+++|+.|++++|.+.+ +...+ ..+|+|+.|.+++|.+... .-..+..+++|+.|++.+|.+... -...+..
T Consensus 60 l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 3344445555555554442 22222 2345555555555544321 112233445555555555544221 1223445
Q ss_pred CCCCCeEe
Q 048333 274 FTRLQFLF 281 (413)
Q Consensus 274 ~~~L~~L~ 281 (413)
+|+|+.||
T Consensus 139 lP~Lk~LD 146 (175)
T PF14580_consen 139 LPSLKVLD 146 (175)
T ss_dssp -TT-SEET
T ss_pred cChhheeC
Confidence 55555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=1.4e-09 Score=102.82 Aligned_cols=133 Identities=38% Similarity=0.486 Sum_probs=60.6
Q ss_pred cccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCC
Q 048333 198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277 (413)
Q Consensus 198 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 277 (413)
.+..+++|+.|+++.|.+. .++......+.|+.|++++|.+. .+|........|+++.++++.. -..+..+..+.++
T Consensus 158 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l 234 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNL 234 (394)
T ss_pred hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccc
Confidence 3444455555555555543 23332334445555555555444 2333222333355555554432 1233334444555
Q ss_pred CeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 278 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
..+.+..+.+.. .+..++.++.++.|++++|.++ .++. +....+++.|+++++.+.
T Consensus 235 ~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 235 SGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence 555555544432 2333444555555555555554 2222 444555555555555444
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=2.9e-10 Score=115.35 Aligned_cols=180 Identities=28% Similarity=0.339 Sum_probs=119.9
Q ss_pred cCCCCcEEEcCCcc--CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 109 KLSNLKTLNLGDVS--IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 109 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
.+++|++|-+..+. +.......|..+|.|+.|++++|.-. +.+|..++.+.+||+|+++++.+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-----------~~LP~~I~~Li~LryL~L~~t~I~--- 608 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-----------SKLPSSIGELVHLRYLDLSDTGIS--- 608 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-----------CcCChHHhhhhhhhcccccCCCcc---
Confidence 35689999988876 44444556888999999999987643 578999999999999999999988
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcC--cccCCcccCCCCCCcEEEecCCccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKL--SGEFPWSTGNFSSLKLLNLRSCGFW 264 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~ 264 (413)
.+|..+.+++.|.+|++..+.....++.....+.+|++|.+..... +......+..+.+|+.+.+.....
T Consensus 609 -------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 609 -------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred -------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 4799999999999999998876556677777799999999876542 122233345556666665543322
Q ss_pred cccchhhccCCCCC----eEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333 265 SKVPHSIGNFTRLQ----FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 265 ~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
.....+..+.+|. .+.+..+... .....+..+++|+.|.+.+|.+.
T Consensus 681 -~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 681 -LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred -HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 1112222233332 2222222211 23344455666777777666664
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.8e-09 Score=102.10 Aligned_cols=196 Identities=31% Similarity=0.382 Sum_probs=127.0
Q ss_pred cEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCC-CCCEEEccCCcCcccCCcccCCCC
Q 048333 173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF-SLEKLDLSFNKLSGEFPWSTGNFS 251 (413)
Q Consensus 173 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~ 251 (413)
..+....+.+... ...+...+.++.+++.++.+. .++....... +|+.|+++++.+. .++..+..++
T Consensus 96 ~~l~~~~~~~~~~----------~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~ 163 (394)
T COG4886 96 PSLDLNLNRLRSN----------ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP 163 (394)
T ss_pred ceeeccccccccC----------chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc
Confidence 3567777766321 123344467888888888776 4555455553 7888888888776 4445567778
Q ss_pred CCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECC
Q 048333 252 SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMA 331 (413)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (413)
.|+.|++++|.+ ...+......+.|+.|++++|.+.+ .+........|+++.+++|... ..+..+..+..+..+.+.
T Consensus 164 ~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 164 NLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred cccccccCCchh-hhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccC
Confidence 888888888877 3444444466778888888887763 4443344556788888877543 445556667777777777
Q ss_pred CCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCc
Q 048333 332 QNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF 393 (413)
Q Consensus 332 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 393 (413)
+|.+..... .+..++.+++|++++|.++.++. . ....++++|+++++.+...
T Consensus 241 ~n~~~~~~~---~~~~l~~l~~L~~s~n~i~~i~~-~------~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 241 NNKLEDLPE---SIGNLSNLETLDLSNNQISSISS-L------GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred Cceeeeccc---hhccccccceecccccccccccc-c------cccCccCEEeccCcccccc
Confidence 776653222 45667778888888887665544 1 1455677888887777643
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=6.3e-10 Score=95.03 Aligned_cols=207 Identities=16% Similarity=0.085 Sum_probs=116.9
Q ss_pred CCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc-CCcc
Q 048333 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE-FPWS 246 (413)
Q Consensus 168 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~ 246 (413)
.+.+++.+++.+|.|++... +...+.++|.|+.|+++.|.+...+...-....+|+.|.+.+..+... ....
T Consensus 69 ~~~~v~elDL~~N~iSdWse-------I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-------IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HhhhhhhhhcccchhccHHH-------HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh
Confidence 35567777777777765422 333456666777777777766533322113445666666666655422 2223
Q ss_pred cCCCCCCcEEEecCCccccccc--hhh-ccCCCCCeEecCCcccCC--cccccccCCCCCcEEEccCCccccc-cccccc
Q 048333 247 TGNFSSLKLLNLRSCGFWSKVP--HSI-GNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLR 320 (413)
Q Consensus 247 l~~~~~L~~L~l~~~~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~ 320 (413)
+..+|.++.|+++.|.+..... ... ..-+.+++++...|.... .....-.-+|++..+.+..|.+.+. ..+.+.
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se 221 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE 221 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence 4455666666666663311000 000 011234444444443221 0011112357778888888877533 234556
Q ss_pred CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc---ccccceeee
Q 048333 321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT---TSQKIQYRG 384 (413)
Q Consensus 321 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~---~~~~L~~L~ 384 (413)
.+|.+.-|+++.+++.++..++ .+.++++|+-|.++++++.+- ..+..+..+ .+++++.|+
T Consensus 222 ~~p~~~~LnL~~~~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~--l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVD-ALNGFPQLVDLRVSENPLSDP--LRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCcchhhhhcccccccHHHHH-HHcCCchhheeeccCCccccc--ccCCcceEEEEeeccceEEec
Confidence 6788888999999999888877 899999999999999985331 222222222 566666665
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=1.3e-10 Score=103.62 Aligned_cols=314 Identities=19% Similarity=0.196 Sum_probs=152.3
Q ss_pred CCCCCCCCCCCcccceEEee----------------CCCCceEEEecCCCccccccCCccccccccccceeeccccCCCC
Q 048333 20 SWKPEEGSVDCYSWDVVHCN----------------KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS 83 (413)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 83 (413)
.|+.. ..|...|..+.-. ...+.++.|+++|+.-.+..+.-....++|++++|.+.++....
T Consensus 101 ~~n~~--AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT 178 (483)
T KOG4341|consen 101 MWNKL--ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT 178 (483)
T ss_pred Hhhhh--hhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc
Confidence 46654 6666666555421 12357899999998665544443356789999999999886332
Q ss_pred CC----CCccccCcCccccCC------cchhhhhhcCCCCcEEEcCCccC-CC-CcCccccCCCCCcEEEccCCcccccc
Q 048333 84 SE----IPPEIINLSRLELQK------PSFENLFEKLSNLKTLNLGDVSI-DS-TIPHNIKNLSSLTFVSLRNCELQAMC 151 (413)
Q Consensus 84 ~~----~~~~~~~L~~L~l~~------~~i~~~~~~~~~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~l~~~~ 151 (413)
+. +.+...+++++.+.. ..+......|++|++|+++.|.. .+ .+...+.+++.++.+..++|.-....
T Consensus 179 d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le 258 (483)
T KOG4341|consen 179 DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE 258 (483)
T ss_pred HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH
Confidence 21 223445555555443 22233345677777777776642 22 22223445566666666665421110
Q ss_pred hhhhhhcccCCCccccCCCCccEEECCCC-ccccccccccccccccccccCCCCccEEeCCCCcC-CCcchhhh-hCCCC
Q 048333 152 SFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF-FGELPTSI-RNLFS 228 (413)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~ 228 (413)
.+...-+.+..+..+++.++ .+++.. +...-..+..|+.+..+++.- .+....++ .++++
T Consensus 259 ---------~l~~~~~~~~~i~~lnl~~c~~lTD~~--------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 259 ---------ALLKAAAYCLEILKLNLQHCNQLTDED--------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred ---------HHHHHhccChHhhccchhhhccccchH--------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 00011123344555554444 344331 111223455666666665543 22222222 34566
Q ss_pred CCEEEccCCcC-cccCCcc-cCCCCCCcEEEecCCcccc--ccchhhccCCCCCeEecCCccc-CCcccccc----cCCC
Q 048333 229 LEKLDLSFNKL-SGEFPWS-TGNFSSLKLLNLRSCGFWS--KVPHSIGNFTRLQFLFLGFNNF-SGDLLGSI----GNLR 299 (413)
Q Consensus 229 L~~L~l~~~~~-~~~~~~~-l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l----~~~~ 299 (413)
|+.+.+..+.. +...... -.+++.|+.+++.++.... .+.+.-.+++.|+.+.+++|.. ++.....+ ....
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 77776666642 2111111 1345666666666664321 1223334556666666666643 22212222 1234
Q ss_pred CCcEEEccCCccc-ccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333 300 SLEVIYIAKCNFS-GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352 (413)
Q Consensus 300 ~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 352 (413)
.++.+.++++..+ +..-+.+..|++|+.+++-++......++......+|+++
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 5555555555543 2233344455555555555554333333222334444444
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=7.7e-10 Score=94.52 Aligned_cols=226 Identities=19% Similarity=0.182 Sum_probs=137.6
Q ss_pred CCcEEEcCCccCCCCcC-ccc-cCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333 112 NLKTLNLGDVSIDSTIP-HNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 112 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
-++.+.+.++.+..... ..+ +.+..++++++.+|.+++. +.+...+.++|+|+.|+++.|.+.....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW---------seI~~ile~lP~l~~LNls~N~L~s~I~-- 114 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW---------SEIGAILEQLPALTTLNLSCNSLSSDIK-- 114 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH---------HHHHHHHhcCccceEeeccCCcCCCccc--
Confidence 44455566666643211 112 3567888999999988864 3344556788999999999998775421
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCc-chhhhhCCCCCCEEEccCCcCccc--CCcccC-CCCCCcEEEecCCccc-
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGE-LPTSIRNLFSLEKLDLSFNKLSGE--FPWSTG-NFSSLKLLNLRSCGFW- 264 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~-~~~~L~~L~l~~~~~~- 264 (413)
.+| ....+|+.|-+.+.++.-. ....+..+|.++.|.++.|..... ...... .-+.+.+++..+|...
T Consensus 115 ----~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 115 ----SLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL 187 (418)
T ss_pred ----cCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence 222 2346788888888777532 334567788888888888744311 111111 1246677777777541
Q ss_pred -cccchhhccCCCCCeEecCCcccCCc-ccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEECCCCcCcceech
Q 048333 265 -SKVPHSIGNFTRLQFLFLGFNNFSGD-LLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVEL 341 (413)
Q Consensus 265 -~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~ 341 (413)
...-..-+.++++..+.+..|.+... .-......|.+.-|+|+.+++.+. -...+.++++|..|.++++.+.+...-
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 11111224467788888888866532 223445577777888888888532 234667788899999988887632210
Q ss_pred ----hHhhhcccCCCeee
Q 048333 342 ----DVLLTSWKNLEALD 355 (413)
Q Consensus 342 ----~~~~~~~~~L~~L~ 355 (413)
...++.+++++.|+
T Consensus 268 ~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 268 GERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcceEEEEeeccceEEec
Confidence 01344566666554
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.1e-10 Score=106.03 Aligned_cols=169 Identities=29% Similarity=0.384 Sum_probs=74.4
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccc
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGE 194 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 194 (413)
..+++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++.
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r------------~ip~~i~~L~~lt~l~ls~NqlS~---------- 135 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR------------TIPEAICNLEALTFLDLSSNQLSH---------- 135 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce------------ecchhhhhhhHHHHhhhccchhhc----------
Confidence 3344444443 34444444444555555544443 344444455555555555555441
Q ss_pred ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 274 (413)
+|..+..++ |+.|-+++|++. .+|..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+ ..+|..+..+
T Consensus 136 lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l-~~lp~El~~L 211 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSL 211 (722)
T ss_pred CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCC
Confidence 233333322 444444444443 34444444444444444444443 2333344444444444444443 2233333322
Q ss_pred CCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
.|..||++.|.+. .+|..|..+..|++|-|.+|.+.
T Consensus 212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 2444444444444 34444444444444444444443
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.8e-10 Score=98.28 Aligned_cols=195 Identities=18% Similarity=0.194 Sum_probs=127.5
Q ss_pred CccEEeCCCCcCCC-cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc-ccc-ccchhhccCCCCCeE
Q 048333 204 SLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG-FWS-KVPHSIGNFTRLQFL 280 (413)
Q Consensus 204 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L 280 (413)
.++.+|++...++. ..-..+++|.+|+.|.+.++.+.+.+...+..-..|+.+++++|. ++. .....+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47778887766642 233457778888888888888876666667777888888888873 322 223346788889999
Q ss_pred ecCCcccCCcccc-cccC-CCCCcEEEccCCccc---ccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeee
Q 048333 281 FLGFNNFSGDLLG-SIGN-LRSLEVIYIAKCNFS---GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALD 355 (413)
Q Consensus 281 ~l~~~~~~~~~~~-~l~~-~~~L~~L~L~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 355 (413)
+++.|.+..+... ++.. -++|..|+++|+.-. ..+.-....||+|..||+++|....... ...+..++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeee
Confidence 9998876543221 1222 468888999887431 1223334579999999999987665544 33778889999999
Q ss_pred ccCccccccceeeecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCc
Q 048333 356 ISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLV 404 (413)
Q Consensus 356 l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~ 404 (413)
++.|.. +..+....+ ..|+|.+|++.+|-=. ...-....+++|+
T Consensus 345 lsRCY~-----i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCYD-----IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhhcC-----CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 999872 222222223 6788999998887433 2222233455554
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.5e-10 Score=97.47 Aligned_cols=179 Identities=22% Similarity=0.188 Sum_probs=92.2
Q ss_pred CcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCC
Q 048333 137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF 216 (413)
Q Consensus 137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 216 (413)
|++|++++..++. ..+-..+..|.+|+.|.+.++++.+. +...++...+|+.|+++.+.-.
T Consensus 187 lq~lDLS~s~it~----------stl~~iLs~C~kLk~lSlEg~~LdD~---------I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 187 LQHLDLSNSVITV----------STLHGILSQCSKLKNLSLEGLRLDDP---------IVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hHHhhcchhheeH----------HHHHHHHHHHHhhhhccccccccCcH---------HHHHHhccccceeecccccccc
Confidence 6666666655543 12223345566666666666666654 3344555666666766665321
Q ss_pred Cc--chhhhhCCCCCCEEEccCCcCcccCCcc-c-CCCCCCcEEEecCCcc---ccccchhhccCCCCCeEecCCcc-cC
Q 048333 217 GE--LPTSIRNLFSLEKLDLSFNKLSGEFPWS-T-GNFSSLKLLNLRSCGF---WSKVPHSIGNFTRLQFLFLGFNN-FS 288 (413)
Q Consensus 217 ~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l-~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~-~~ 288 (413)
.. ....+..|..|+.|++++|......... + ..-++|+.|+++|+.- ...+......+++|.+|++++|. +.
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 11 2234556666777777666554221111 1 1225566666666532 11222233556666666666663 33
Q ss_pred CcccccccCCCCCcEEEccCCccc-ccccccccCCCCCCEEECCCCc
Q 048333 289 GDLLGSIGNLRSLEVIYIAKCNFS-GQITSSLRNLTQLVVLDMAQNS 334 (413)
Q Consensus 289 ~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~n~ 334 (413)
......+-+++.|+.|.+++|-.. ....-.+...|.|.+|++.++-
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 333344445666666666666532 1112233445666666666553
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=7.6e-08 Score=95.69 Aligned_cols=108 Identities=35% Similarity=0.490 Sum_probs=88.8
Q ss_pred CCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcC
Q 048333 136 SLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF 215 (413)
Q Consensus 136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 215 (413)
.++.|+++++.+. +.+|..+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|.+
T Consensus 419 ~v~~L~L~~n~L~-----------g~ip~~i~~L~~L~~L~Ls~N~l~g~---------iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 419 FIDGLGLDNQGLR-----------GFIPNDISKLRHLQSINLSGNSIRGN---------IPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEEECCCCCcc-----------ccCCHHHhCCCCCCEEECCCCcccCc---------CChHHhCCCCCCEEECCCCCC
Confidence 3778888888876 67788888899999999999988753 677788899999999999998
Q ss_pred CCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC-CCCcEEEecCCcc
Q 048333 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGF 263 (413)
Q Consensus 216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~ 263 (413)
...+|..+..+++|+.|++++|.+.+.+|..+... .++..+++.+|..
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 88888889999999999999998887788776543 4567788877754
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3.5e-09 Score=100.47 Aligned_cols=174 Identities=28% Similarity=0.321 Sum_probs=89.1
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+..+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+.+ ..+..++.|+.|++.+|.+...
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-------------~~l~~l~~L~~L~l~~N~i~~~- 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-------------EGLSTLTLLKELNLSGNLISDI- 155 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-------------cchhhccchhhheeccCcchhc-
Confidence 4456677777777776653 222255567777777777776542 3344555577777777776643
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 265 (413)
..+..++.|+.+++++|.+...-+ . +..+.+++.+.+.+|.+... ..+..+..+..+.+..+.+..
T Consensus 156 ----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 156 ----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred ----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence 234446666777777766643222 1 35566666666666655311 112222333333444443321
Q ss_pred ccchhhccCC--CCCeEecCCcccCCcccccccCCCCCcEEEccCCcc
Q 048333 266 KVPHSIGNFT--RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311 (413)
Q Consensus 266 ~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 311 (413)
..+ +.... +|+.+.++++++... +..+..+..+..+++..+.+
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccc
Confidence 111 11111 255555655555421 13344455555555555554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.64 E-value=2e-09 Score=90.81 Aligned_cols=226 Identities=22% Similarity=0.229 Sum_probs=143.3
Q ss_pred CCceEEEecCCCccccccC--CccccccccccceeeccccCCCCCCCCccc-cCcCccccCCcchhhhhhcCCCCcEEEc
Q 048333 42 TGHVIKLNLSHGCLFGSIN--SSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLELQKPSFENLFEKLSNLKTLNL 118 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~L~~L~l 118 (413)
...++.++|++|.+...-. .++.|..-++|+..+++.- +++. ..+.+ .+|+ .+.+++-+||+|+.+++
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr-~kde~~~~L~-------~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGR-DKDELYSNLV-------MLLKALLKCPRLQKVDL 99 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcc-cHHHHHHHHH-------HHHHHHhcCCcceeeec
Confidence 4578899999998864321 1225666777888877653 2221 11111 1221 12445778999999999
Q ss_pred CCccCCCCcCc----cccCCCCCcEEEccCCcccccchhhhhhcccCCC---------ccccCCCCccEEECCCCccccc
Q 048333 119 GDVSIDSTIPH----NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP---------SSLGNLSKLLHLDLSLNELQGE 185 (413)
Q Consensus 119 ~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~---------~~l~~~~~L~~L~l~~~~i~~~ 185 (413)
|+|.+....|. .++.-..|.+|.+++|.+..... +.+. .-...-|.|+.+....|++.+.
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-------~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-------GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-------hHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 99998765443 45667899999999998753211 1111 1234568899999999988754
Q ss_pred cccccccccccccccCCCCccEEeCCCCcCCCc-----chhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEE
Q 048333 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGE-----LPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLL 256 (413)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L 256 (413)
... .+...+.....|+++.+.+|.+... +...+..+.+|+.|++..|.++.. +...+..++.|+.|
T Consensus 173 s~~-----~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 173 SKE-----LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred cHH-----HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 321 1233455557899999999987532 223455678899999998877632 33445667778888
Q ss_pred EecCCccccccchh-h-----ccCCCCCeEecCCcccC
Q 048333 257 NLRSCGFWSKVPHS-I-----GNFTRLQFLFLGFNNFS 288 (413)
Q Consensus 257 ~l~~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~ 288 (413)
.+.+|-+....... + ...++|..|...+|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 88888664432221 1 22466777777776554
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=3.2e-08 Score=66.25 Aligned_cols=61 Identities=34% Similarity=0.504 Sum_probs=43.2
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL 182 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 182 (413)
|+|++|++++|.+....+..|..+++|++|++++|.+.. .-+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-----------i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-----------IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-----------EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-----------cCHHHHcCCCCCCEEeCcCCcC
Confidence 467778888877775555667777888888888777763 2345677777777777777764
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=9.5e-10 Score=98.19 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=72.2
Q ss_pred ccCCCCCeEecCCccc-CCccccccc-CCCCCcEEEccCCcccccc-c-ccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333 272 GNFTRLQFLFLGFNNF-SGDLLGSIG-NLRSLEVIYIAKCNFSGQI-T-SSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347 (413)
Q Consensus 272 ~~~~~L~~L~l~~~~~-~~~~~~~l~-~~~~L~~L~L~~~~~~~~~-~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 347 (413)
..+..|+.+..+++.. .+.....++ +.++|+.+-+.+|+.-+.. . ..-.+++.|+.+++.++....+..+...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3345566666665532 222222332 3566777777666532111 1 1223466677777766655433333334556
Q ss_pred ccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC--CcchHhhcCCCCcEEeCCCCC
Q 048333 348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT--KFPNFLENQNHLVILNLSDNR 412 (413)
Q Consensus 348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~ 412 (413)
|+.|+.+.+++|...+.+....-....-....|+.+.+++|..+ +....+..|++|+.+++-+|+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 67777777776663221100000000014456667777777655 445566667777777766654
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=5.9e-09 Score=98.92 Aligned_cols=217 Identities=29% Similarity=0.339 Sum_probs=145.9
Q ss_pred cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
.+..++.+.++.+.+.. +-..+..+++|..|++.++.+.. +...+..+++|++|++++|.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~------------i~~~l~~~~~L~~L~ls~N~I~~i--- 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK------------IENLLSSLVNLQVLDLSFNKITKL--- 133 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh------------cccchhhhhcchheeccccccccc---
Confidence 45666666788777764 33457778999999999999873 323377789999999999999865
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEEecCCcccccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP-WSTGNFSSLKLLNLRSCGFWSKV 267 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 267 (413)
..+..++.|+.|++++|.+.. + ..+..++.|+.+++++|.+....+ . ...+..++.+.+.++.+...
T Consensus 134 --------~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i- 201 (414)
T KOG0531|consen 134 --------EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI- 201 (414)
T ss_pred --------cchhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-
Confidence 346677779999999998853 2 345568889999999998874433 2 45677888888888876322
Q ss_pred chhhccCCCCCeEecCCcccCCcccccccCCCC--CcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhh
Q 048333 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRS--LEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 345 (413)
..+..+..+..+++..|.+... ..+...+. |+.+.+.++++. ..+..+..+..+..+++.++.+...-. +
T Consensus 202 -~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~----~ 273 (414)
T KOG0531|consen 202 -EGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG----L 273 (414)
T ss_pred -cchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc----c
Confidence 2233344455557777766532 22222333 788888888886 333555677888888888887763222 3
Q ss_pred hcccCCCeeeccCccc
Q 048333 346 TSWKNLEALDISLNRS 361 (413)
Q Consensus 346 ~~~~~L~~L~l~~~~i 361 (413)
...+.+..+....+++
T Consensus 274 ~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKL 289 (414)
T ss_pred cccchHHHhccCcchh
Confidence 3444555555555554
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=6.8e-08 Score=64.63 Aligned_cols=59 Identities=27% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 300 SLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 300 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
+|+.|++++|.++...+..|..+++|++|++++|.+....+ . .+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-D-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-T-TTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-H-HHcCCCCCCEEeCcCCc
Confidence 34444444444443333444444555555555444442222 2 44455555555555443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=4.7e-08 Score=82.77 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=90.5
Q ss_pred cCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc-cccccccccccCCCCccEEeC
Q 048333 132 KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF-RCFGELPISMGNLGSLKELDL 210 (413)
Q Consensus 132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~~~~~~~l~~L~~L~l 210 (413)
..+..+..+++++|.+..-.. ..+...+.+-.+|+..++++-........+ ....-+...+.+|++|+.+++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~-------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAM-------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HhhcceeEEeccCCcccHHHH-------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 346667777777777653111 122333455566666666553221110000 000011223456666666666
Q ss_pred CCCcCCCcchh----hhhCCCCCCEEEccCCcCcccCCcc-------------cCCCCCCcEEEecCCcccccc----ch
Q 048333 211 SQNGFFGELPT----SIRNLFSLEKLDLSFNKLSGEFPWS-------------TGNFSSLKLLNLRSCGFWSKV----PH 269 (413)
Q Consensus 211 ~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~----~~ 269 (413)
+.|.+....|. .+++-..|++|.+++|.+....-.. ...-|.|+++....|++-... ..
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 66665544433 2334455666666666553111111 112355566655555541110 11
Q ss_pred hhccCCCCCeEecCCcccCCccccc-----ccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCc
Q 048333 270 SIGNFTRLQFLFLGFNNFSGDLLGS-----IGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
.+..-..|+.+.+..|.+....... +..+.+|+.|++..|-++.. ...++...+.|+.|.+.+|-+.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 1111235566666666554332211 22355666666666555421 2233334445566666655554
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=3.3e-09 Score=101.04 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=114.0
Q ss_pred cccccCCCCccEEeCCCCcCCCcchhhhhCC-CCCCEEEccCCcCc----------ccCCcccCCCCCCcEEEecCCccc
Q 048333 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNL-FSLEKLDLSFNKLS----------GEFPWSTGNFSSLKLLNLRSCGFW 264 (413)
Q Consensus 196 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~----------~~~~~~l~~~~~L~~L~l~~~~~~ 264 (413)
|..+..++.|++|.+.++.+.. ..++..+ ..|++|.-. +... +.+... ..+-.|.+.+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L- 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRL- 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhH-
Confidence 5566778889999999988853 2223222 234444221 1111 011111 1224567777777766
Q ss_pred cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccc-cccCCCCCCEEECCCCcCcceechhH
Q 048333 265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQLVVLDMAQNSYGGTVELDV 343 (413)
Q Consensus 265 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~ 343 (413)
......+.-++.|++|++++|.+.+. ..+..++.|+.|+|+.|.+. .+|. ....|. |+.|++++|.++...
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~---- 248 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLR---- 248 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhh----
Confidence 34455567778889999999988752 36778889999999998886 3332 233455 889999999887433
Q ss_pred hhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333 344 LLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 344 ~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
.+.++.+|+.||+++|-+..-.+. ...+.+..|+.|++.+|.+-
T Consensus 249 gie~LksL~~LDlsyNll~~hseL----~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSEL----EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhh----hHHHHHHHHHHHhhcCCccc
Confidence 456788889999998875432211 11125677888899988876
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=7.9e-09 Score=98.54 Aligned_cols=128 Identities=23% Similarity=0.213 Sum_probs=88.3
Q ss_pred CCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333 227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306 (413)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 306 (413)
..|...+.++|.+. .+...+.-++.++.|++++|++.... .+..+++|++|++++|.+....-.....+ .|..|++
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 35666667777665 44455566677888888888774332 67788888888888888764222222223 4888888
Q ss_pred cCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333 307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361 (413)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i 361 (413)
++|.++.. ..+.++.+|+.||+++|-+.+.-.+. .+..+..|+.|++.||++
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcc
Confidence 88887632 24467888888899888887655533 677778888889998884
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.6e-06 Score=52.18 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=21.1
Q ss_pred cceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 379 KIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 379 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
+|++|++++|+|+.+|..++++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 46666666666666666566666666666666654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=6.5e-07 Score=89.01 Aligned_cols=132 Identities=25% Similarity=0.282 Sum_probs=78.6
Q ss_pred CCCCEEEccCCcCc-ccCCccc-CCCCCCcEEEecCCccc-cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333 227 FSLEKLDLSFNKLS-GEFPWST-GNFSSLKLLNLRSCGFW-SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303 (413)
Q Consensus 227 ~~L~~L~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 303 (413)
.+|++|++++.... ..-+..+ ..+|+|+.|.+.+-.+. ++......++|+|.+||++++++.. ...++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHHH
Confidence 46788888764321 1111112 24678888888776552 2334455677788888888887764 255667777777
Q ss_pred EEccCCcccc-cccccccCCCCCCEEECCCCcCcceechh----HhhhcccCCCeeeccCcc
Q 048333 304 IYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELD----VLLTSWKNLEALDISLNR 360 (413)
Q Consensus 304 L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 360 (413)
|.+.+-.+.. ..-..+..+++|+.||+|........... ..-..+|.|+.||.|++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7777655542 22334556777888888776544322100 123346777777777766
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=1.9e-06 Score=85.79 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=59.2
Q ss_pred cCCCCcEEEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333 109 KLSNLKTLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA 187 (413)
Q Consensus 109 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 187 (413)
.+|.|++|.+++-.+.. .+.....++|+|..||+++++++.+ .+++++++|+.|.+.+-.+....
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------------~GIS~LknLq~L~mrnLe~e~~~- 211 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------------SGISRLKNLQVLSMRNLEFESYQ- 211 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------------HHHhccccHHHHhccCCCCCchh-
Confidence 46777777776655432 2333445667777777777766532 44566666666666665554310
Q ss_pred cccccccccccccCCCCccEEeCCCCcCCCc--ch----hhhhCCCCCCEEEccCCcCc
Q 048333 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGE--LP----TSIRNLFSLEKLDLSFNKLS 240 (413)
Q Consensus 188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~----~~l~~~~~L~~L~l~~~~~~ 240 (413)
--..+.++++|+.||+|....... +. +.-..+|.|+.|+.++..+.
T Consensus 212 -------~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 212 -------DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -------hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 112344566666777665543211 11 11223556666666655543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.6e-05 Score=47.76 Aligned_cols=39 Identities=28% Similarity=0.521 Sum_probs=28.4
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 150 (413)
++|++|++++|+++ .+|..+.+|++|++|++++|+++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 46888888888887 4555678888888888888887643
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=6.3e-05 Score=61.40 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEE
Q 048333 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLD 329 (413)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~ 329 (413)
.....+++++|.+.. ...|..+++|.+|.+..|++++..+..-..+|+|..|.+.+|.+... .-..+..||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345667777776521 23466677777777777777754444444467777777777776521 123345677777777
Q ss_pred CCCCcCcceech-hHhhhcccCCCeeeccCcc
Q 048333 330 MAQNSYGGTVEL-DVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 330 l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 360 (413)
+-+|.+.....- ...+-.+|+|++||+.+-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777776632211 1145566777777777644
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.68 E-value=8.7e-06 Score=79.25 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=20.8
Q ss_pred CCEEECCCCcCcceechhHhhhc-ccCCCeeeccCcc
Q 048333 325 LVVLDMAQNSYGGTVELDVLLTS-WKNLEALDISLNR 360 (413)
Q Consensus 325 L~~L~l~~n~~~~~~~~~~~~~~-~~~L~~L~l~~~~ 360 (413)
++.|+++.+.......+. .... +..++.+++.++.
T Consensus 403 l~~L~l~~~~~~t~~~l~-~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLR-CLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchH-HHhhhhhccccCCccCcc
Confidence 677777777655444333 2222 6667777777766
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=0.0001 Score=60.23 Aligned_cols=68 Identities=28% Similarity=0.303 Sum_probs=41.7
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG 184 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 184 (413)
|..++.|.+|.+++|+++..-|..-..+++|.+|.+.+|.+..+ +.+ .-+..+|+|++|.+-+|++..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l---------~dl-~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL---------GDL-DPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh---------hhc-chhccCCccceeeecCCchhc
Confidence 44566777777777777655554444556777777777776543 111 224566677777777766654
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=2.8e-06 Score=64.69 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=25.9
Q ss_pred CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC
Q 048333 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC 261 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 261 (413)
.++.|++++|.+. .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+..++
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 4445555555543 34444555555555555555443 33433333444444444443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00082 Score=62.19 Aligned_cols=136 Identities=24% Similarity=0.344 Sum_probs=79.3
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC-ccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGE 185 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~ 185 (413)
+..++++++|++++|.+. .+|. + -.+|++|.+++|.-. ..+|..+. ++|++|.+++| .+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-----------tsLP~~LP--~nLe~L~Ls~Cs~L~-- 108 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-----------TTLPGSIP--EGLEKLTVCHCPEIS-- 108 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-----------ccCCchhh--hhhhheEccCccccc--
Confidence 455799999999999776 4553 1 246999999887533 23454443 58999999988 443
Q ss_pred cccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCC-CCCCEEEccCCcCc--ccCCcccCCCCCCcEEEecCCc
Q 048333 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL-FSLEKLDLSFNKLS--GEFPWSTGNFSSLKLLNLRSCG 262 (413)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~ 262 (413)
.+| ..|+.|++..+.... +..+ ++|+.|.+.++... ...+. .-+++|++|.+++|.
T Consensus 109 --------sLP------~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 109 --------GLP------ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCS 167 (426)
T ss_pred --------ccc------cccceEEeCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCC
Confidence 234 346677776544321 1222 24666766433211 01111 122678888888776
Q ss_pred cccccchhhccCCCCCeEecCCc
Q 048333 263 FWSKVPHSIGNFTRLQFLFLGFN 285 (413)
Q Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~~ 285 (413)
.. ..|..+. .+|+.|.++.+
T Consensus 168 ~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 168 NI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cc-cCccccc--ccCcEEEeccc
Confidence 42 2333222 57777777654
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00043 Score=63.98 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=88.8
Q ss_pred hhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCc
Q 048333 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE 302 (413)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 302 (413)
+..+++++.|++++|.+. .+|. -+++|+.|.+++|.-....|..+ .++|+.|.+++|.....+ .++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccc
Confidence 556789999999999776 4552 34579999999876555666544 368999999988422222 25688
Q ss_pred EEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccccccccee
Q 048333 303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQY 382 (413)
Q Consensus 303 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~ 382 (413)
.|.+..+... .++ .-.++|+.|.+.++......... ..-.++|++|++++|....++ .. ...+|+.
T Consensus 116 ~L~L~~n~~~-~L~---~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~LP-------~~-LP~SLk~ 181 (426)
T PRK15386 116 SLEIKGSATD-SIK---NVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIILP-------EK-LPESLQS 181 (426)
T ss_pred eEEeCCCCCc-ccc---cCcchHhheeccccccccccccc--cccCCcccEEEecCCCcccCc-------cc-ccccCcE
Confidence 8888765543 111 12246788888554321111100 012357999999998843221 11 2358999
Q ss_pred eeccCCC
Q 048333 383 RGLRSCN 389 (413)
Q Consensus 383 L~l~~~~ 389 (413)
|.++.+.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 9998763
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=1.2e-05 Score=61.24 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=69.1
Q ss_pred CCCEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEE
Q 048333 228 SLEKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY 305 (413)
Q Consensus 228 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 305 (413)
.+..++++.|.+.. ..+..+....+|+..++++|.+....+..-..++.++.|++.+|.+. ..|..++.+|.|+.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 35566777776541 12223345567777788888774444444455667788888888877 4555677788888888
Q ss_pred ccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333 306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 306 L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
++.|.+. ..|..+..+.++..|+.-+|...
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 8888776 34444445777777777777654
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=3.1e-05 Score=75.37 Aligned_cols=178 Identities=18% Similarity=0.177 Sum_probs=97.2
Q ss_pred CCCCCEEEccCCcCccc--CCcccCCCCCCcEEEecCC-ccccc----cchhhccCCCCCeEecCCcc-cCCcccccccC
Q 048333 226 LFSLEKLDLSFNKLSGE--FPWSTGNFSSLKLLNLRSC-GFWSK----VPHSIGNFTRLQFLFLGFNN-FSGDLLGSIGN 297 (413)
Q Consensus 226 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ 297 (413)
++.|+.+.+..+..... .......++.|+.|+++++ ..... .......+++|+.++++.+. +++.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666555532211 2223344566666666552 11111 11233445677777777776 55554444443
Q ss_pred -CCCCcEEEccCCc-cccc-ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc----ccccce----
Q 048333 298 -LRSLEVIYIAKCN-FSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR----SSVLTK---- 366 (413)
Q Consensus 298 -~~~L~~L~L~~~~-~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~----i~~l~~---- 366 (413)
++.|+.|.+.+|. +++. +......++.|++|++++|.......+.....++++++.|.+.... ++....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 6788888877776 4533 3344456777888888877665333333345567776666554433 221110
Q ss_pred eee-cccccc---ccccceeeeccCCCCCCc--chHhhcCCCC
Q 048333 367 ATF-DATTDT---TSQKIQYRGLRSCNLTKF--PNFLENQNHL 403 (413)
Q Consensus 367 ~~~-~~~~~~---~~~~L~~L~l~~~~l~~l--~~~~~~l~~L 403 (413)
... +....+ .++.++.+.+..+..... ...+.+|+.|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 000 111111 788899999998885532 3566777766
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.16 E-value=0.002 Score=50.23 Aligned_cols=10 Identities=30% Similarity=0.487 Sum_probs=3.0
Q ss_pred CCCCCCEEEc
Q 048333 225 NLFSLEKLDL 234 (413)
Q Consensus 225 ~~~~L~~L~l 234 (413)
.+.+|+.+.+
T Consensus 33 ~~~~l~~i~~ 42 (129)
T PF13306_consen 33 NCTSLKSINF 42 (129)
T ss_dssp T-TT-SEEEE
T ss_pred cccccccccc
Confidence 3333333333
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.96 E-value=0.0039 Score=48.54 Aligned_cols=105 Identities=19% Similarity=0.130 Sum_probs=36.7
Q ss_pred hhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCc
Q 048333 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE 302 (413)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 302 (413)
+..+.+|+.+.+.. .+.......+..+.+|+.+.+... +.......|..+++++.+.+.. .+.......+..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444555555442 222233334445555555555442 3222233344454555555543 22222233444455555
Q ss_pred EEEccCCcccccccccccCCCCCCEEECCC
Q 048333 303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQ 332 (413)
Q Consensus 303 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (413)
.+.+..+ +.......+..+ .|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555432 221223334444 455555443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00066 Score=57.92 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCCCCcEEEccCC--cccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 297 NLRSLEVIYIAKC--NFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 297 ~~~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
.+|+|+.|.++.| .+.+.+......+|+|+++++++|.+.....+. .+..+++|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence 3445555555544 333333333333445555555554443211111 33344444444444444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00066 Score=57.93 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=73.6
Q ss_pred CCCCCcEEEecCCccccccchhhccCCCCCeEecCCc--ccCCcccccccCCCCCcEEEccCCcccc-cccccccCCCCC
Q 048333 249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN--NFSGDLLGSIGNLRSLEVIYIAKCNFSG-QITSSLRNLTQL 325 (413)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L 325 (413)
.+..|+.+.+.+++++. ...+..+++|+.|.++.| ++...+......+|+|+.+++++|++.. .....+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34556666666665532 234677889999999999 5544344444456999999999998862 122344567788
Q ss_pred CEEECCCCcCcceech-hHhhhcccCCCeeeccCcc
Q 048333 326 VVLDMAQNSYGGTVEL-DVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 326 ~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 360 (413)
..|++.+|..+....- ...+.-+++|.+||-....
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 8999999877642211 2367778888888776654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00012 Score=62.72 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=15.5
Q ss_pred CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 321 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
.|.+|++|.|..|.|.+...+. -+.++|+|+.|-|..|+
T Consensus 61 rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhccCC
Confidence 3444444444444443322222 33444444444444433
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.00057 Score=58.80 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccccc
Q 048333 298 LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTS 377 (413)
Q Consensus 298 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~ 377 (413)
+.+.+.|+++||.+.+. .....++.|+.|.|+-|.|++.. .+..|..|++|+|..|.|.+++++.- .-.+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~----pl~rCtrLkElYLRkN~I~sldEL~Y----Lknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA----PLQRCTRLKELYLRKNCIESLDELEY----LKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch----hHHHHHHHHHHHHHhcccccHHHHHH----HhcC
Confidence 45778899999999742 34467899999999999998544 46789999999999999877654321 1178
Q ss_pred ccceeeeccCCCCC--C----cchHhhcCCCCcEEe
Q 048333 378 QKIQYRGLRSCNLT--K----FPNFLENQNHLVILN 407 (413)
Q Consensus 378 ~~L~~L~l~~~~l~--~----l~~~~~~l~~L~~L~ 407 (413)
++|+.|+|..|.-. . -...+.-+|+|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 89999999987543 2 225677889998886
No 71
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.80 E-value=0.0055 Score=37.25 Aligned_cols=26 Identities=35% Similarity=0.770 Sum_probs=16.4
Q ss_pred cCCCCCCCCCCCCCCCCCcccceEEee
Q 048333 13 DCRPTMASWKPEEGSVDCYSWDVVHCN 39 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (413)
|+...+++|+.. ...++|.|.||.|.
T Consensus 18 ~~~~~l~~W~~~-~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 18 DPSGVLSSWNPS-SDSDPCSWSGVTCD 43 (43)
T ss_dssp SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred ccCcccccCCCc-CCCCCeeeccEEeC
Confidence 566889999972 02899999999994
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0043 Score=31.49 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=10.8
Q ss_pred ceeeeccCCCCCCcchHhh
Q 048333 380 IQYRGLRSCNLTKFPNFLE 398 (413)
Q Consensus 380 L~~L~l~~~~l~~l~~~~~ 398 (413)
|++|++++|.++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666665555443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.31 E-value=0.00011 Score=70.12 Aligned_cols=185 Identities=26% Similarity=0.266 Sum_probs=97.9
Q ss_pred ccEEeCCCCcCCCc----chhhhhCCCCCCEEEccCCcCcccC----CcccCCC-CCCcEEEecCCccccc----cchhh
Q 048333 205 LKELDLSQNGFFGE----LPTSIRNLFSLEKLDLSFNKLSGEF----PWSTGNF-SSLKLLNLRSCGFWSK----VPHSI 271 (413)
Q Consensus 205 L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~ 271 (413)
+..+.+.+|.+... +..++...+.|+.|++++|.+.... -..+... ..++.|.+..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77788888887644 3345566788888888888776321 1122222 4566677766766432 33445
Q ss_pred ccCCCCCeEecCCcccCCc----cccccc----CCCCCcEEEccCCccccc----ccccccCCCC-CCEEECCCCcCcce
Q 048333 272 GNFTRLQFLFLGFNNFSGD----LLGSIG----NLRSLEVIYIAKCNFSGQ----ITSSLRNLTQ-LVVLDMAQNSYGGT 338 (413)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~----~~~~l~----~~~~L~~L~L~~~~~~~~----~~~~~~~~~~-L~~L~l~~n~~~~~ 338 (413)
.....++.++++.|.+... ....+. ...++++|++.+|.++.. ....+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5566777777777765421 111222 345667777777766532 1223333444 55566666665532
Q ss_pred ec--hhHhhhcc-cCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC
Q 048333 339 VE--LDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT 391 (413)
Q Consensus 339 ~~--~~~~~~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~ 391 (413)
.. ....+..+ +.+++++++.|.|+..+. ......+ .++.++++.+..|.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~--~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGV--RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccch--HHHHHHHhhhHHHHHhhcccCccc
Confidence 11 11122233 345666666666433211 1111111 4456666666666655
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.94 E-value=0.015 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=5.8
Q ss_pred cceeeeccCCCCCCc
Q 048333 379 KIQYRGLRSCNLTKF 393 (413)
Q Consensus 379 ~L~~L~l~~~~l~~l 393 (413)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.44 E-value=0.018 Score=29.15 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=11.8
Q ss_pred CCcEEEcCCccCCCCcCcccc
Q 048333 112 NLKTLNLGDVSIDSTIPHNIK 132 (413)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~ 132 (413)
+|++|++++|.++ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566777776666 4555443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.78 E-value=0.00052 Score=65.67 Aligned_cols=189 Identities=25% Similarity=0.284 Sum_probs=114.9
Q ss_pred CcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCC-CCccEEeCCCCcC
Q 048333 137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNL-GSLKELDLSQNGF 215 (413)
Q Consensus 137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 215 (413)
+..|.+.+|.+.+-.. ..+...+...+.|+.|++++|.+.+..... +...+... +.++.|.+..|.+
T Consensus 89 l~~L~L~~~~l~~~~~-------~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~-----l~~~l~~~~~~l~~L~l~~c~l 156 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGA-------EELAQALKTLPTLGQLDLSGNNLGDEGARL-----LCEGLRLPQCLLQTLELVSCSL 156 (478)
T ss_pred HHHhhhhhCccccchH-------HHHHHHhcccccHhHhhcccCCCccHhHHH-----HHhhcccchHHHHHHHhhcccc
Confidence 7888888888775211 234455677888999999999888543311 12222222 4566677777776
Q ss_pred CC----cchhhhhCCCCCCEEEccCCcCcc----cCCcccC----CCCCCcEEEecCCccccc----cchhhccCCC-CC
Q 048333 216 FG----ELPTSIRNLFSLEKLDLSFNKLSG----EFPWSTG----NFSSLKLLNLRSCGFWSK----VPHSIGNFTR-LQ 278 (413)
Q Consensus 216 ~~----~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~ 278 (413)
.. .+...+.....++.++++.|.+.. ..+..+. ...++++|.+.+|.++.. ....+...++ +.
T Consensus 157 ~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~ 236 (478)
T KOG4308|consen 157 TSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLR 236 (478)
T ss_pred cccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhH
Confidence 53 245666677788888888776631 1222222 356677888877766321 2223344444 55
Q ss_pred eEecCCcccCCcccc----cccCC-CCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcc
Q 048333 279 FLFLGFNNFSGDLLG----SIGNL-RSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 279 ~L~l~~~~~~~~~~~----~l~~~-~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
.+++..|.+.+.... .+..+ +.++.+++..|.+++. .+..+..++.++++.++.|.+.+
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 677777776643222 22233 5667888888877643 34455667788888888887763
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=0.019 Score=47.35 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=46.2
Q ss_pred CCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc-cccc-cCCCCCCEEECCCCcCcceechhHhhhcccCCCee
Q 048333 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI-TSSL-RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL 354 (413)
Q Consensus 277 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 354 (413)
++.++-+++.+..+....+..++.++.|.+.+|...+.. -+.+ .-.++|+.|++++|.-.++..+. .+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHHH
Confidence 456666666666566666666677777777666554321 1111 13466666777666544444433 55566666666
Q ss_pred eccC
Q 048333 355 DISL 358 (413)
Q Consensus 355 ~l~~ 358 (413)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.026 Score=46.51 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=33.6
Q ss_pred CcEEEecCCccccccchhhccCCCCCeEecCCcccCC-ccccccc-CCCCCcEEEccCCc-ccccccccccCCCCCCEEE
Q 048333 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIG-NLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLD 329 (413)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~ 329 (413)
++.++-+++.+..+....+..+++++.|.+..|.-.+ .....++ ..++|+.|++++|. ||+..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444444444444555555555555443211 1111111 13455555555542 3322233344445555554
Q ss_pred CC
Q 048333 330 MA 331 (413)
Q Consensus 330 l~ 331 (413)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.40 E-value=0.23 Score=26.11 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=6.7
Q ss_pred ceeeeccCCCCCCcc
Q 048333 380 IQYRGLRSCNLTKFP 394 (413)
Q Consensus 380 L~~L~l~~~~l~~l~ 394 (413)
|+.|++++|++..+|
T Consensus 4 L~~L~L~~N~l~~lp 18 (26)
T smart00369 4 LRELDLSNNQLSSLP 18 (26)
T ss_pred CCEEECCCCcCCcCC
Confidence 444444444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.40 E-value=0.23 Score=26.11 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=6.7
Q ss_pred ceeeeccCCCCCCcc
Q 048333 380 IQYRGLRSCNLTKFP 394 (413)
Q Consensus 380 L~~L~l~~~~l~~l~ 394 (413)
|+.|++++|++..+|
T Consensus 4 L~~L~L~~N~l~~lp 18 (26)
T smart00370 4 LRELDLSNNQLSSLP 18 (26)
T ss_pred CCEEECCCCcCCcCC
Confidence 444444444444444
No 81
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.68 E-value=1.7 Score=40.87 Aligned_cols=207 Identities=18% Similarity=0.113 Sum_probs=98.8
Q ss_pred CccEEeCCCCcCCCcchhhhhCC---CCCCEEEccCCcCcc---cCCcccCCCCCCcEEEecCCccc----ccc----ch
Q 048333 204 SLKELDLSQNGFFGELPTSIRNL---FSLEKLDLSFNKLSG---EFPWSTGNFSSLKLLNLRSCGFW----SKV----PH 269 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~----~~~----~~ 269 (413)
.+++++++.+...+.+|..+..+ ..++.++.+...+.- .-+...+.-.+++..+++.++.. .+. ..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 57788898888877777654433 246666666554421 11222334456666666655431 111 12
Q ss_pred hhccCCCCCeEecCCcccCCccccc----ccC--CCCCcEEEccCCcccc-cccccccCCCCCCEEECCCCcCcceechh
Q 048333 270 SIGNFTRLQFLFLGFNNFSGDLLGS----IGN--LRSLEVIYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELD 342 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~--~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 342 (413)
.+..-.++ +|++..+....+.+.. ++. -..=-++++..|...+ .....-..-..++.|.+..|...+...-.
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 23333445 6666655433221111 111 1111234444444431 12222223345777888777776544322
Q ss_pred HhhhcccCCCeeeccCcccc---ccceeeecccccc-ccccceeeeccCCCCCC----cchHhhcCCCCcEEeCCCC
Q 048333 343 VLLTSWKNLEALDISLNRSS---VLTKATFDATTDT-TSQKIQYRGLRSCNLTK----FPNFLENQNHLVILNLSDN 411 (413)
Q Consensus 343 ~~~~~~~~L~~L~l~~~~i~---~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~----l~~~~~~l~~L~~L~l~~n 411 (413)
.....-+..+.+.+.....+ ..+.......... ...-+.++.++.|.+.. .......-+.+..|+++||
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn 450 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGN 450 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCC
Confidence 23444556676766654321 0000000000001 34456677777776652 2233345567777777776
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.58 E-value=0.36 Score=46.14 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCc
Q 048333 321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359 (413)
Q Consensus 321 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~ 359 (413)
+.+.+..+++++|++.....+.......|.|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345556666666665544443334445566666666666
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.92 E-value=0.51 Score=24.21 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=7.5
Q ss_pred CCCCcEEeCCCCCC
Q 048333 400 QNHLVILNLSDNRI 413 (413)
Q Consensus 400 l~~L~~L~l~~n~i 413 (413)
+++|+.|++++|+|
T Consensus 1 ~~~L~~L~l~~n~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNNQI 14 (24)
T ss_dssp -TT-SEEE-TSSBE
T ss_pred CCCCCEEEccCCcC
Confidence 45677777777754
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.74 E-value=0.9 Score=23.92 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=13.6
Q ss_pred ccceeeeccCCCCCCcch
Q 048333 378 QKIQYRGLRSCNLTKFPN 395 (413)
Q Consensus 378 ~~L~~L~l~~~~l~~l~~ 395 (413)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457788888888887775
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.43 E-value=0.075 Score=44.94 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=59.7
Q ss_pred ccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhh
Q 048333 319 LRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398 (413)
Q Consensus 319 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~ 398 (413)
+......+.||++.|.+..... .++-+..+..|+++.|.+..++.... ....+..+++..|.....|..++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~~~~d~~------q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKFLPKDAK------QQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhhChhhHH------HHHHHHHHHhhccchhhCCcccc
Confidence 3456667777887776653222 45556677888888887655443332 34457778888888888888888
Q ss_pred cCCCCcEEeCCCCCC
Q 048333 399 NQNHLVILNLSDNRI 413 (413)
Q Consensus 399 ~l~~L~~L~l~~n~i 413 (413)
..|.++.++..++++
T Consensus 109 k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEF 123 (326)
T ss_pred ccCCcchhhhccCcc
Confidence 888888888887764
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.84 E-value=1.4 Score=23.28 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=9.8
Q ss_pred cCCCeeeccCccccccc
Q 048333 349 KNLEALDISLNRSSVLT 365 (413)
Q Consensus 349 ~~L~~L~l~~~~i~~l~ 365 (413)
.+|+.|+++.|+|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34666666666655443
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.67 E-value=2.1 Score=22.37 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=9.4
Q ss_pred CCCCcEEeCCCCC
Q 048333 400 QNHLVILNLSDNR 412 (413)
Q Consensus 400 l~~L~~L~l~~n~ 412 (413)
|++|+.|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5677777777774
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.15 E-value=0.09 Score=44.48 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=58.8
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (413)
.+..+.....||++.|+.-.- ..-+..+..|.+|+++.+++. ..|..++....++.+.+.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~-------------------~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~ 96 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNL-------------------GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASH 96 (326)
T ss_pred hhhccceeeeehhhhhHHHhh-------------------ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhh
Confidence 466677777778777654321 112444566777777777775 456667777777777777
Q ss_pred CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccc
Q 048333 144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ 183 (413)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 183 (413)
+|..+ ..|.++...++++++++-++.+.
T Consensus 97 ~n~~~------------~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 97 KNNHS------------QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccchh------------hCCccccccCCcchhhhccCcch
Confidence 76654 56777778888888888777754
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.91 E-value=3.4 Score=22.13 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=8.6
Q ss_pred CCCcEEeCCCCCC
Q 048333 401 NHLVILNLSDNRI 413 (413)
Q Consensus 401 ~~L~~L~l~~n~i 413 (413)
++|+.|+|++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4667777777654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.77 E-value=1.3 Score=42.49 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=34.8
Q ss_pred ccCCCCCeEecCCcccCCc-ccccc-cCCCCCcEEEccCC--cccccccccccCCCCCCEEECCCCcCcc
Q 048333 272 GNFTRLQFLFLGFNNFSGD-LLGSI-GNLRSLEVIYIAKC--NFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~-~~~~l-~~~~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
.+.+.+..+++++|++.+. ....+ ...|+|+.|+|++| .+.......-.+...|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3456667777777776531 11112 23577777777777 3221110011123456777777777654
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=33.74 E-value=22 Score=18.62 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.9
Q ss_pred CCEEECCCCcC
Q 048333 325 LVVLDMAQNSY 335 (413)
Q Consensus 325 L~~L~l~~n~~ 335 (413)
|++|.|....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44444444443
Done!