Query 048333
Match_columns 413
No_of_seqs 226 out of 3376
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 2.6E-40 9E-45 329.4 26.8 370 12-413 51-525 (636)
2 3rgz_A Protein brassinosteroid 100.0 3.5E-40 1.2E-44 335.7 27.8 374 13-413 26-526 (768)
3 4ecn_A Leucine-rich repeat pro 100.0 2E-37 7E-42 314.1 26.7 356 34-413 315-765 (876)
4 3rgz_A Protein brassinosteroid 100.0 1.8E-37 6.1E-42 315.8 25.2 353 41-413 267-716 (768)
5 3v47_A TOLL-like receptor 5B a 100.0 1.2E-35 4.1E-40 285.2 25.6 342 42-413 29-407 (455)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-34 8.9E-39 285.8 28.3 203 202-413 349-557 (606)
7 4eco_A Uncharacterized protein 100.0 1.2E-34 4.3E-39 288.5 25.1 340 41-413 204-599 (636)
8 3t6q_A CD180 antigen; protein- 100.0 1.2E-33 4.2E-38 280.9 31.3 366 42-413 32-488 (606)
9 3t6q_A CD180 antigen; protein- 100.0 4.3E-33 1.5E-37 277.0 33.1 106 41-148 79-192 (606)
10 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-34 6.4E-39 262.6 18.1 272 17-360 23-302 (313)
11 4ecn_A Leucine-rich repeat pro 100.0 9.5E-33 3.2E-37 280.0 27.5 337 41-413 446-839 (876)
12 3o6n_A APL1; leucine-rich repe 100.0 1.2E-32 4.1E-37 258.9 25.8 306 43-413 45-351 (390)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-31 4.5E-36 269.9 32.1 356 43-413 25-516 (680)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-32 3.7E-37 270.9 23.6 348 43-413 26-509 (549)
15 2id5_A Lingo-1, leucine rich r 100.0 2.7E-32 9.4E-37 263.3 25.8 303 42-391 31-333 (477)
16 4fmz_A Internalin; leucine ric 100.0 2.9E-31 9.8E-36 245.6 30.7 303 41-413 42-345 (347)
17 2z63_A TOLL-like receptor 4, v 100.0 6E-32 2E-36 266.9 27.0 156 249-413 371-530 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-32 1.9E-36 264.0 26.5 87 104-215 62-150 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 2E-32 7E-37 267.2 22.7 341 43-413 21-480 (520)
20 3oja_B Anopheles plasmodium-re 100.0 6.3E-32 2.1E-36 267.5 26.2 332 15-413 6-357 (597)
21 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-32 8.6E-37 280.7 24.0 343 32-413 15-413 (844)
22 2z63_A TOLL-like receptor 4, v 100.0 6.5E-32 2.2E-36 266.6 24.3 359 40-413 49-506 (570)
23 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-31 7.2E-36 268.4 28.2 281 107-413 325-621 (680)
24 2id5_A Lingo-1, leucine rich r 100.0 1.7E-31 5.9E-36 257.7 24.7 299 69-413 32-332 (477)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-32 2.7E-36 265.3 22.4 341 43-413 52-509 (562)
26 1o6v_A Internalin A; bacterial 100.0 1.3E-30 4.5E-35 250.6 30.3 332 43-413 46-387 (466)
27 3vq2_A TLR4, TOLL-like recepto 100.0 5E-31 1.7E-35 262.1 27.8 347 41-413 30-533 (606)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-31 9E-36 261.5 25.2 328 45-413 33-485 (562)
29 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-31 3.7E-36 275.9 21.6 370 40-413 45-516 (844)
30 4g8a_A TOLL-like receptor 4; l 100.0 6.6E-30 2.2E-34 255.4 31.6 352 42-413 51-579 (635)
31 3v47_A TOLL-like receptor 5B a 100.0 3.1E-31 1E-35 254.5 20.9 316 69-413 30-383 (455)
32 1xku_A Decorin; proteoglycan, 100.0 2.2E-29 7.5E-34 231.2 28.4 293 70-412 32-330 (330)
33 4fmz_A Internalin; leucine ric 100.0 5.1E-29 1.7E-33 230.4 30.1 284 64-413 39-323 (347)
34 3o6n_A APL1; leucine-rich repe 100.0 1.8E-29 6.3E-34 237.2 27.5 289 65-413 41-330 (390)
35 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-29 1.5E-33 229.3 25.1 293 69-412 33-331 (332)
36 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-28 9.1E-33 233.0 30.2 301 41-413 40-351 (457)
37 1o6v_A Internalin A; bacterial 100.0 2.9E-28 9.9E-33 234.3 29.6 310 65-413 42-365 (466)
38 3oja_B Anopheles plasmodium-re 100.0 1.1E-28 3.8E-33 244.2 26.9 289 66-413 48-336 (597)
39 1xku_A Decorin; proteoglycan, 100.0 4.7E-28 1.6E-32 222.3 26.8 289 45-389 33-330 (330)
40 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-29 1.1E-33 246.1 20.2 200 30-265 3-210 (549)
41 1ogq_A PGIP-2, polygalacturona 100.0 4.5E-29 1.6E-33 227.0 19.4 249 111-389 50-302 (313)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.8E-36 258.0 2.1 356 43-413 3-410 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-27 6.5E-32 218.4 24.1 288 45-389 35-331 (332)
44 4fcg_A Uncharacterized protein 100.0 1.5E-28 5.1E-33 224.9 14.9 250 13-307 42-309 (328)
45 1jl5_A Outer protein YOPM; leu 100.0 4.3E-27 1.5E-31 224.4 23.4 215 43-288 11-250 (454)
46 1jl5_A Outer protein YOPM; leu 100.0 1.9E-26 6.6E-31 219.9 27.2 311 45-413 73-408 (454)
47 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-26 2.4E-30 216.3 28.1 281 64-413 37-330 (457)
48 2z66_A Variable lymphocyte rec 99.9 4.2E-26 1.4E-30 207.0 22.2 254 69-360 28-285 (306)
49 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-29 8.6E-34 241.6 0.6 357 42-412 27-438 (461)
50 2z66_A Variable lymphocyte rec 99.9 2.8E-26 9.5E-31 208.2 19.2 267 110-400 27-297 (306)
51 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-25 7.3E-30 222.7 26.8 318 69-413 52-554 (635)
52 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-26 2.2E-30 203.6 20.6 268 114-412 14-285 (285)
53 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.8E-30 201.4 21.4 250 110-388 31-284 (285)
54 2z80_A TOLL-like receptor 2, v 99.9 1.8E-26 6E-31 213.8 14.6 283 19-362 21-314 (353)
55 2z80_A TOLL-like receptor 2, v 99.9 4.5E-26 1.5E-30 211.1 17.2 279 110-413 30-313 (353)
56 4fcg_A Uncharacterized protein 99.9 1.3E-25 4.4E-30 205.4 18.9 228 109-363 79-315 (328)
57 3zyj_A Leucine-rich repeat-con 99.9 9.3E-24 3.2E-28 201.4 24.8 248 112-391 44-292 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 202.5 24.2 226 111-360 75-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 8.3E-24 2.9E-28 201.7 24.1 208 107-336 84-292 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 9.9E-24 3.4E-28 201.9 24.5 248 112-391 55-303 (452)
61 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-23 1.5E-27 202.8 27.7 257 69-413 40-296 (622)
62 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.6E-31 209.7 2.6 251 107-413 39-308 (312)
63 1wwl_A Monocyte differentiatio 99.9 6.8E-26 2.3E-30 206.1 5.3 154 203-363 149-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-25 3.2E-29 199.0 12.6 263 43-360 10-273 (317)
65 3ogk_B Coronatine-insensitive 99.9 2.6E-26 8.9E-31 227.6 2.2 213 195-413 285-525 (592)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2E-24 6.8E-29 196.8 11.7 243 105-388 28-272 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-23 1.2E-27 203.4 20.0 281 17-362 11-297 (622)
68 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.9E-27 179.7 21.1 216 28-287 2-217 (270)
69 3oja_A Leucine-rich immune mol 99.9 3.8E-23 1.3E-27 199.1 15.3 237 109-386 32-270 (487)
70 3oja_A Leucine-rich immune mol 99.9 1.2E-22 4.2E-27 195.5 16.0 234 134-409 33-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 1.5E-21 5.2E-26 174.2 21.9 202 204-413 29-236 (276)
72 3ogk_B Coronatine-insensitive 99.9 8.8E-24 3E-28 209.4 7.0 349 44-410 139-547 (592)
73 2p1m_B Transport inhibitor res 99.9 9.7E-25 3.3E-29 216.3 -2.3 332 66-413 102-518 (594)
74 2ast_B S-phase kinase-associat 99.9 6E-24 2E-28 195.5 2.2 262 27-363 33-307 (336)
75 2z62_A TOLL-like receptor 4, v 99.9 1.9E-21 6.6E-26 173.5 18.4 206 111-337 28-238 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.2E-20 4.2E-25 167.7 23.3 204 111-337 16-219 (270)
77 3rfs_A Internalin B, repeat mo 99.9 2.9E-21 9.9E-26 171.9 17.2 200 110-340 40-239 (272)
78 2ca6_A RAN GTPase-activating p 99.9 7.9E-23 2.7E-27 191.6 7.4 248 103-364 24-318 (386)
79 3rfs_A Internalin B, repeat mo 99.9 8.7E-22 3E-26 175.3 13.4 216 110-360 18-233 (272)
80 2p1m_B Transport inhibitor res 99.9 1E-23 3.5E-28 209.0 0.3 229 167-411 286-541 (594)
81 2ca6_A RAN GTPase-activating p 99.9 6.8E-23 2.3E-27 192.0 5.7 257 126-391 23-316 (386)
82 1p9a_G Platelet glycoprotein I 99.9 8E-21 2.7E-25 170.4 18.3 204 165-391 5-208 (290)
83 2ast_B S-phase kinase-associat 99.9 5.3E-22 1.8E-26 182.4 10.7 256 111-398 47-314 (336)
84 1p9a_G Platelet glycoprotein I 99.9 2E-20 6.9E-25 167.8 20.6 204 107-337 6-209 (290)
85 3goz_A Leucine-rich repeat-con 99.9 2.2E-22 7.7E-27 186.7 7.2 216 103-334 14-264 (362)
86 3goz_A Leucine-rich repeat-con 99.8 3.2E-22 1.1E-26 185.7 4.6 265 115-391 2-297 (362)
87 4glp_A Monocyte differentiatio 99.8 4.4E-21 1.5E-25 174.1 8.7 205 169-413 90-306 (310)
88 1h6u_A Internalin H; cell adhe 99.8 3.6E-19 1.2E-23 161.2 20.9 195 64-312 36-230 (308)
89 1h6u_A Internalin H; cell adhe 99.8 1.5E-19 5E-24 163.8 18.3 195 107-337 37-231 (308)
90 4glp_A Monocyte differentiatio 99.8 3E-20 1E-24 168.6 11.9 204 135-362 91-307 (310)
91 2xwt_C Thyrotropin receptor; s 99.8 1.1E-19 3.6E-24 158.6 13.9 196 204-411 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 7.6E-19 2.6E-23 154.3 17.9 181 135-338 14-194 (251)
93 3m19_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 152.0 19.6 180 111-313 14-193 (251)
94 2xwt_C Thyrotropin receptor; s 99.8 2.3E-19 7.9E-24 156.4 13.7 200 111-359 31-236 (239)
95 4ay9_X Follicle-stimulating ho 99.8 8.2E-18 2.8E-22 155.2 16.2 163 237-410 90-255 (350)
96 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.5E-21 143.7 18.3 106 199-312 108-213 (291)
97 1h6t_A Internalin B; cell adhe 99.7 6.9E-17 2.4E-21 144.9 15.5 170 133-336 44-213 (291)
98 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 136.4 15.9 179 114-322 10-188 (208)
99 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 157.4 17.5 175 64-290 38-212 (605)
100 3cvr_A Invasion plasmid antige 99.7 4.4E-17 1.5E-21 158.3 14.2 206 18-296 33-251 (571)
101 2o6s_A Variable lymphocyte rec 99.7 2.6E-16 8.8E-21 134.0 17.2 149 203-360 28-176 (208)
102 4ezg_A Putative uncharacterize 99.7 7.7E-17 2.6E-21 136.0 13.3 150 250-413 43-193 (197)
103 1m9s_A Internalin B; cell inva 99.7 9.1E-17 3.1E-21 157.8 15.1 175 107-315 39-213 (605)
104 3cvr_A Invasion plasmid antige 99.7 3.3E-16 1.1E-20 152.2 18.4 182 111-340 59-247 (571)
105 4ay9_X Follicle-stimulating ho 99.7 2.2E-16 7.7E-21 145.5 16.2 221 111-358 30-255 (350)
106 3e6j_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 134.3 17.3 158 27-240 15-172 (229)
107 4ezg_A Putative uncharacterize 99.7 4E-16 1.4E-20 131.5 12.8 86 199-286 62-147 (197)
108 2v9t_B SLIT homolog 2 protein 99.7 1.3E-15 4.6E-20 130.6 15.9 135 203-337 32-166 (220)
109 2xot_A Amphoterin-induced prot 99.7 1.4E-15 4.7E-20 140.8 15.7 178 137-337 20-203 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-15 1E-19 128.4 16.5 137 204-340 33-170 (220)
111 2v9t_B SLIT homolog 2 protein 99.7 2.6E-15 9.1E-20 128.7 16.1 114 199-312 52-165 (220)
112 2xot_A Amphoterin-induced prot 99.7 1.3E-15 4.5E-20 141.0 15.0 176 114-312 21-202 (361)
113 3e6j_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 127.1 17.1 134 203-337 40-173 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 5.9E-15 2E-19 126.6 16.0 152 114-287 14-165 (220)
115 1xeu_A Internalin C; cellular 99.6 2.7E-15 9.2E-20 132.3 12.9 148 108-288 38-185 (263)
116 1xeu_A Internalin C; cellular 99.6 2.6E-15 8.9E-20 132.5 10.7 171 109-314 17-187 (263)
117 1dce_A Protein (RAB geranylger 99.6 1.1E-16 3.9E-21 156.1 0.3 120 205-329 443-566 (567)
118 1dce_A Protein (RAB geranylger 99.6 4.7E-18 1.6E-22 165.9 -9.7 124 228-356 442-567 (567)
119 3sb4_A Hypothetical leucine ri 99.6 1E-14 3.5E-19 133.2 12.1 287 43-356 25-328 (329)
120 4b8c_D Glucose-repressible alc 99.5 2.4E-15 8.2E-20 151.3 5.9 210 27-285 159-369 (727)
121 2ell_A Acidic leucine-rich nuc 99.5 4.7E-14 1.6E-18 115.6 11.0 91 272-362 68-160 (168)
122 2ell_A Acidic leucine-rich nuc 99.5 7E-14 2.4E-18 114.5 11.4 133 203-337 24-161 (168)
123 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.9E-19 146.4 7.2 136 219-360 216-352 (727)
124 3sb4_A Hypothetical leucine ri 99.5 3.2E-14 1.1E-18 130.0 9.5 126 251-385 202-328 (329)
125 2je0_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 113.3 8.8 109 110-240 16-126 (149)
126 2je0_A Acidic leucine-rich nuc 99.5 7.8E-14 2.7E-18 111.8 9.7 83 204-288 18-101 (149)
127 1w8a_A SLIT protein; signaling 99.5 2.2E-13 7.6E-18 114.1 11.9 113 228-340 30-143 (192)
128 1w8a_A SLIT protein; signaling 99.5 1E-12 3.5E-17 110.0 13.8 89 199-287 50-138 (192)
129 4fdw_A Leucine rich hypothetic 99.4 5.6E-12 1.9E-16 117.7 19.5 151 199-357 176-331 (401)
130 4fdw_A Leucine rich hypothetic 99.4 5.9E-12 2E-16 117.5 19.4 247 106-390 131-382 (401)
131 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 9.9E-18 111.7 9.0 111 248-362 16-126 (176)
132 2wfh_A SLIT homolog 2 protein 99.4 2.8E-12 9.7E-17 107.3 14.2 125 114-262 13-137 (193)
133 2wfh_A SLIT homolog 2 protein 99.4 4.5E-12 1.5E-16 106.1 14.4 108 204-336 32-139 (193)
134 2o6r_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 104.7 14.0 112 228-339 29-140 (177)
135 2o6r_A Variable lymphocyte rec 99.4 7E-12 2.4E-16 103.4 14.5 111 203-313 28-138 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-12 7.5E-17 106.4 10.1 109 200-312 16-126 (176)
137 1ds9_A Outer arm dynein; leuci 99.3 1.9E-14 6.5E-19 121.3 -4.3 150 107-281 14-180 (198)
138 4fs7_A Uncharacterized protein 99.3 8.5E-11 2.9E-15 109.9 19.4 146 246-406 248-393 (394)
139 3un9_A NLR family member X1; l 99.3 3.9E-13 1.4E-17 124.3 2.9 185 226-412 71-281 (372)
140 1ds9_A Outer arm dynein; leuci 99.3 7.6E-14 2.6E-18 117.6 -3.9 134 221-361 42-184 (198)
141 3un9_A NLR family member X1; l 99.2 1.1E-12 3.6E-17 121.4 1.4 114 170-288 72-196 (372)
142 4fs7_A Uncharacterized protein 99.2 4.1E-10 1.4E-14 105.3 17.0 298 64-410 66-375 (394)
143 3g39_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 92.3 11.8 105 230-337 12-116 (170)
144 3g39_A Variable lymphocyte rec 99.1 5.9E-10 2E-14 91.1 12.1 64 199-262 50-113 (170)
145 2r9u_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 91.4 11.8 105 230-337 15-119 (174)
146 4gt6_A Cell surface protein; l 99.1 6.2E-09 2.1E-13 97.2 20.0 131 268-411 258-388 (394)
147 2r9u_A Variable lymphocyte rec 99.1 9.4E-10 3.2E-14 90.2 12.1 14 170-183 33-46 (174)
148 4gt6_A Cell surface protein; l 99.0 1.7E-08 5.8E-13 94.2 20.3 269 106-411 82-367 (394)
149 2ra8_A Uncharacterized protein 98.9 1.8E-09 6.2E-14 98.9 7.9 189 170-362 107-320 (362)
150 2ifg_A High affinity nerve gro 98.9 1.2E-08 4.1E-13 93.6 12.1 103 207-312 12-116 (347)
151 2ra8_A Uncharacterized protein 98.8 6.1E-09 2.1E-13 95.4 7.9 191 163-360 132-341 (362)
152 4h09_A Hypothetical leucine ri 98.8 4.4E-07 1.5E-11 84.1 19.6 144 246-401 212-356 (379)
153 2ifg_A High affinity nerve gro 98.7 4.5E-08 1.5E-12 89.7 10.8 105 173-289 11-117 (347)
154 1io0_A Tropomodulin; LRR prote 98.7 9.3E-09 3.2E-13 85.1 5.2 67 270-336 31-106 (185)
155 4h09_A Hypothetical leucine ri 98.7 2.6E-06 8.9E-11 78.9 21.3 295 43-365 46-348 (379)
156 1io0_A Tropomodulin; LRR prote 98.7 6.2E-09 2.1E-13 86.2 2.4 125 103-239 28-163 (185)
157 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.6E-12 76.2 4.1 83 252-334 62-150 (176)
158 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4E-12 76.6 2.8 35 300-334 62-96 (176)
159 3rw6_A Nuclear RNA export fact 98.0 8.6E-07 2.9E-11 77.0 0.7 30 204-233 221-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 8.8E-06 3E-10 70.7 6.9 82 320-407 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.6E-05 5.6E-10 65.3 3.8 124 103-238 33-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 4.5E-05 1.5E-09 62.6 5.7 89 271-359 37-136 (197)
163 3rfe_A Platelet glycoprotein I 95.9 0.012 4.1E-07 44.8 5.5 33 380-412 33-66 (130)
164 3rfe_A Platelet glycoprotein I 95.4 0.043 1.5E-06 41.7 6.8 37 111-147 31-67 (130)
165 2lz0_A Uncharacterized protein 45.7 29 0.001 24.3 4.4 36 199-235 16-51 (100)
166 2lz0_A Uncharacterized protein 40.1 29 0.001 24.3 3.7 13 294-306 38-50 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-40 Score=329.37 Aligned_cols=370 Identities=19% Similarity=0.265 Sum_probs=268.9
Q ss_pred ecCCCCCCCCCCCCCCCCCccc---ceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCC------
Q 048333 12 FDCRPTMASWKPEEGSVDCYSW---DVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFN------ 82 (413)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------ 82 (413)
.++.|..++|+. +.++|.| .||.|... ++|+.|+|+++.+.+.++. .++.+++|++|++++|.+.
T Consensus 51 ~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~ 124 (636)
T 4eco_A 51 GFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLF 124 (636)
T ss_dssp C------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSB
T ss_pred CcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccc
Confidence 567788899997 8999999 99999754 8999999999999999987 9999999999999999651
Q ss_pred CC-----CCC---------------------cccc----------------------CcCccccC-----Ccchhhhhhc
Q 048333 83 SS-----EIP---------------------PEII----------------------NLSRLELQ-----KPSFENLFEK 109 (413)
Q Consensus 83 ~~-----~~~---------------------~~~~----------------------~L~~L~l~-----~~~i~~~~~~ 109 (413)
+. .++ ..+. .++.+.+. -..+|..+++
T Consensus 125 ~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~ 204 (636)
T 4eco_A 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204 (636)
T ss_dssp STTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG
T ss_pred cccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhc
Confidence 10 011 0111 11112111 1127888999
Q ss_pred CCCCcEEEcCCccCCCC-----------------cCcccc--CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC
Q 048333 110 LSNLKTLNLGDVSIDST-----------------IPHNIK--NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 170 (413)
+++|++|++++|.+.+. +|..+. ++++|++|++++|.+. +.+|..+.+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~ 273 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-----------TKLPTFLKALP 273 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-----------SSCCTTTTTCS
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-----------ccChHHHhcCC
Confidence 99999999999999875 888888 9999999999999887 67889999999
Q ss_pred CccEEECCCCc-ccc-ccccccccccccccccCC------CCccEEeCCCCcCCCcchh--hhhCCCCCCEEEccCCcCc
Q 048333 171 KLLHLDLSLNE-LQG-EAASFRCFGELPISMGNL------GSLKELDLSQNGFFGELPT--SIRNLFSLEKLDLSFNKLS 240 (413)
Q Consensus 171 ~L~~L~l~~~~-i~~-~~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~ 240 (413)
+|++|++++|. +++ . +|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+.
T Consensus 274 ~L~~L~Ls~n~~l~~~~---------lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 274 EMQLINVACNRGISGEQ---------LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp SCCEEECTTCTTSCHHH---------HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCEEECcCCCCCcccc---------chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999998 775 3 45555554 88999999999887 7777 7888999999999998887
Q ss_pred ccCCcccCCCCCCcEEEecCCccccccchhhccCCC-CCeEecCCcccCCcccccccCCC--CCcEEEccCCcccccccc
Q 048333 241 GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR-LQFLFLGFNNFSGDLLGSIGNLR--SLEVIYIAKCNFSGQITS 317 (413)
Q Consensus 241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~ 317 (413)
+.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. ..+..+...+ +|+.|++++|.+++..|.
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 6677 7778888888888888875 67777888888 888888888887 5566665543 788888888888776666
Q ss_pred ccc-------CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccc-c-ccccceeeeccCC
Q 048333 318 SLR-------NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTD-T-TSQKIQYRGLRSC 388 (413)
Q Consensus 318 ~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~-~-~~~~L~~L~l~~~ 388 (413)
.+. .+++|+.|++++|.+. .++ ...+..+++|++|++++|.++.++...+..... . .+++|++|++++|
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQIS-KFP-KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCC-SCC-THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhcccccccccCCCCCEEECcCCccC-cCC-HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 666 6678888888888777 344 225666777888888888766555433221110 0 1225555555555
Q ss_pred CCCCcchHhh--cCCCCcEEeCCCCCC
Q 048333 389 NLTKFPNFLE--NQNHLVILNLSDNRI 413 (413)
Q Consensus 389 ~l~~l~~~~~--~l~~L~~L~l~~n~i 413 (413)
.++.+|..+. .+++|+.|++++|+|
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred cCCccChhhhhccCCCcCEEECCCCCC
Confidence 5555555544 555555555555543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-40 Score=335.65 Aligned_cols=374 Identities=26% Similarity=0.393 Sum_probs=216.0
Q ss_pred cCCCCCCCCCCCCCCCCCcccceEEeeCCCCceEEEecCCCccccc---cCC---------------------ccccccc
Q 048333 13 DCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGS---INS---------------------SSSLFKL 68 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~---------------------~~~~~~l 68 (413)
|+. .+++|++ +.+||.|.||.|. .++|+.|+|+++.+.+. ++. +..+..+
T Consensus 26 ~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l 99 (768)
T 3rgz_A 26 DKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS 99 (768)
T ss_dssp CTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCC
T ss_pred Ccc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccC
Confidence 666 8999986 7899999999997 57888898888766543 110 1245566
Q ss_pred cccceeeccccCCCCCCCCc------------------------------cccCcCccccCCcchh----hh---hhc--
Q 048333 69 VHLKWLNLALNDFNSSEIPP------------------------------EIINLSRLELQKPSFE----NL---FEK-- 109 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~------------------------------~~~~L~~L~l~~~~i~----~~---~~~-- 109 (413)
++|++|++++|.+.+. ++. .+.+|+.|++..+.+. .. +.+
T Consensus 100 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 6666666666655432 222 2233333444333321 11 223
Q ss_pred --------------------CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCC
Q 048333 110 --------------------LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169 (413)
Q Consensus 110 --------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~ 169 (413)
+++|++|++++|.+.+.+|. +.++++|++|++++|.++ +..|..+.++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l 246 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-----------GDFSRAISTC 246 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-----------SCHHHHTTTC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-----------CcccHHHhcC
Confidence 33444444444444433333 445555555555555444 3344455555
Q ss_pred CCccEEECCCCccccccccc-------------cccccccccccCC-CCccEEeCCCCcCCCcchhhhhCCCCCCEEEcc
Q 048333 170 SKLLHLDLSLNELQGEAASF-------------RCFGELPISMGNL-GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235 (413)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~-------------~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 235 (413)
++|++|++++|.+.+..+.. ...+.+|..+... ++|++|++++|.+...+|..+..+++|++|+++
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 66666666665554322211 1112344444443 666677776666655566666666677777776
Q ss_pred CCcCcccCCcc-cCCCCCCcEEEecCCccccccchhhccCC-CCCeEecCCc--------------------------cc
Q 048333 236 FNKLSGEFPWS-TGNFSSLKLLNLRSCGFWSKVPHSIGNFT-RLQFLFLGFN--------------------------NF 287 (413)
Q Consensus 236 ~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~--------------------------~~ 287 (413)
+|.+.+.+|.. +..+++|++|++++|.+.+..|..+..++ +|++|++++| .+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 66665444443 55666666666666666545555444443 4444444444 44
Q ss_pred CCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcccccccee
Q 048333 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKA 367 (413)
Q Consensus 288 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~ 367 (413)
.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~-~~~~l~~L~~L~L~~N~l------ 478 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-Q-ELMYVKTLETLILDFNDL------ 478 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-G-GGGGCTTCCEEECCSSCC------
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-H-HHcCCCCceEEEecCCcc------
Confidence 33344445555566666666666555555555666666666666666554444 2 455666666666666663
Q ss_pred eecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333 368 TFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 368 ~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i 413 (413)
.+..+..+ .+++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 23333333 6778888888888888 7788888888888888888865
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-37 Score=314.14 Aligned_cols=356 Identities=17% Similarity=0.201 Sum_probs=250.5
Q ss_pred ceEEeeCCCCceEEEecCCCccccccCCccccccccccceeec-cccCCCCCCCCc------------------------
Q 048333 34 DVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNL-ALNDFNSSEIPP------------------------ 88 (413)
Q Consensus 34 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~------------------------ 88 (413)
.||.|.. .++|+.|+|+++.+.+.+++ .++.+++|++|++ ++|.+.+.....
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~ 391 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred CceEecC-CCCEEEEECccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhh
Confidence 9999975 58999999999999999988 9999999999999 777543320000
Q ss_pred -----------------------------cccCcCccccCC-----cchhhhhhcCCCCcEEEcCCccCCC---------
Q 048333 89 -----------------------------EIINLSRLELQK-----PSFENLFEKLSNLKTLNLGDVSIDS--------- 125 (413)
Q Consensus 89 -----------------------------~~~~L~~L~l~~-----~~i~~~~~~~~~L~~L~l~~~~~~~--------- 125 (413)
....++.+.+.. ..+|..++++++|++|++++|.+.+
T Consensus 392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~ 471 (876)
T 4ecn_A 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471 (876)
T ss_dssp TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccc
Confidence 000111121111 1178889999999999999999987
Q ss_pred --------CcCcccc--CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCc-ccc-ccc-ccccc
Q 048333 126 --------TIPHNIK--NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE-LQG-EAA-SFRCF 192 (413)
Q Consensus 126 --------~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~-~~~-~~~~~ 192 (413)
.+|..++ ++++|++|++++|.+. +.+|..+.++++|+.|++++|. +++ ..+ .+
T Consensus 472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-----------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i--- 537 (876)
T 4ecn_A 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-----------TQLPDFLYDLPELQSLNIACNRGISAAQLKADW--- 537 (876)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-----------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH---
T ss_pred cccccccccCChhhhhccCCCCCEEECcCCCCC-----------ccChHHHhCCCCCCEEECcCCCCcccccchHHH---
Confidence 3888877 9999999999999877 6788899999999999999998 775 211 00
Q ss_pred ccccccccCCCCccEEeCCCCcCCCcchh--hhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 193 GELPISMGNLGSLKELDLSQNGFFGELPT--SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 193 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
+.++..+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..
T Consensus 538 ~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~ 613 (876)
T 4ecn_A 538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED 613 (876)
T ss_dssp HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT
T ss_pred HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHH
Confidence 011113344568999999999887 7777 8888999999999998887 666 7888888999999988885 77777
Q ss_pred hccCCC-CCeEecCCcccCCcccccccCCC--CCcEEEccCCcccccccccc---c--CCCCCCEEECCCCcCcceechh
Q 048333 271 IGNFTR-LQFLFLGFNNFSGDLLGSIGNLR--SLEVIYIAKCNFSGQITSSL---R--NLTQLVVLDMAQNSYGGTVELD 342 (413)
Q Consensus 271 ~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~ 342 (413)
+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+.+.+|... . .+++|+.|++++|.+. .++ .
T Consensus 614 l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp-~ 690 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP-T 690 (876)
T ss_dssp SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC-H
T ss_pred HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC-H
Confidence 888888 999999988887 5566665544 38888888888765443221 1 3346777777777776 334 2
Q ss_pred HhhhcccCCCeeeccCccccccceeeeccccc-c-ccccceeeeccCCCCCCcchHhh--cCCCCcEEeCCCCCC
Q 048333 343 VLLTSWKNLEALDISLNRSSVLTKATFDATTD-T-TSQKIQYRGLRSCNLTKFPNFLE--NQNHLVILNLSDNRI 413 (413)
Q Consensus 343 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~-~-~~~~L~~L~l~~~~l~~l~~~~~--~l~~L~~L~l~~n~i 413 (413)
..+..+++|+.|++++|.++.++...+..... . .+++|++|++++|+++.+|..+. .+++|+.|++++|+|
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC
Confidence 24556777777777777766554433322110 0 23356666666666665555554 556666666665543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-37 Score=315.75 Aligned_cols=353 Identities=28% Similarity=0.417 Sum_probs=256.4
Q ss_pred CCCceEEEecCCCccccccCCcccccc-ccccceeeccccCCCCCCCCccc---cCcCccccCCcch----hh-hhhcCC
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFK-LVHLKWLNLALNDFNSSEIPPEI---INLSRLELQKPSF----EN-LFEKLS 111 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~i----~~-~~~~~~ 111 (413)
..+++++|++++|.+.+.++. .+.. +++|++|++++|.+.+. ++..+ .+|+.|++..+.+ +. .+..++
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~--~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPD--FLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCC--CSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred ccCCCCEEECcCCccCCccCH--HHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 346778888888877766665 5555 37888888888777654 55443 4555556665543 33 267777
Q ss_pred CCcEEEcCCccCCCCcCccccCCC-CCcEEEccCCcccc-cchhh--------------hhhcccCCCccccCCCCccEE
Q 048333 112 NLKTLNLGDVSIDSTIPHNIKNLS-SLTFVSLRNCELQA-MCSFF--------------LIQISGRIPSSLGNLSKLLHL 175 (413)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~-~~~~~--------------~~~~~~~~~~~l~~~~~L~~L 175 (413)
+|++|++++|.+.+.+|..+..++ +|++|++++|.+.+ ++... .-.+++.+|..+.++++|+.|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 788888877777666666666665 67777777766543 00000 000224556666777777777
Q ss_pred ECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcE
Q 048333 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKL 255 (413)
Q Consensus 176 ~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 255 (413)
++++|.+++. .|..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus 424 ~Ls~N~l~~~---------~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 424 HLSFNYLSGT---------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp ECCSSEEESC---------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred ECcCCcccCc---------ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 7777776643 5667777888888888888887777777888888888888888887777777888888888
Q ss_pred EEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccccc-----------------
Q 048333 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSS----------------- 318 (413)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~----------------- 318 (413)
|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 888888887777888888888888888888887777777888888888888888776544432
Q ss_pred -----------------------------------------------------ccCCCCCCEEECCCCcCcceechhHhh
Q 048333 319 -----------------------------------------------------LRNLTQLVVLDMAQNSYGGTVELDVLL 345 (413)
Q Consensus 319 -----------------------------------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~ 345 (413)
+..+++|+.|++++|.+.+.++ . .+
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-~-~l 652 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-K-EI 652 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-G-GG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC-H-HH
Confidence 2335678888888888887777 4 67
Q ss_pred hcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333 346 TSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 346 ~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i 413 (413)
..++.|+.|++++|. ..+.+|..+ .+++|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 653 ~~l~~L~~L~Ls~N~------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 653 GSMPYLFILNLGHND------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred hccccCCEEeCcCCc------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 888889999999988 555566655 7788999999999998 8888899999999999998864
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-35 Score=285.19 Aligned_cols=342 Identities=20% Similarity=0.216 Sum_probs=212.0
Q ss_pred CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCC---ccccCcCccccCCcch----hhhhhcCCCCc
Q 048333 42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSF----ENLFEKLSNLK 114 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i----~~~~~~~~~L~ 114 (413)
.+++++|++++|.+.+..+. .+..+++|++|++++|.+.....+ ..+.+|+.|++.++.+ +..++.+++|+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 36899999999999876666 899999999999999987543111 1223344444443332 22344445555
Q ss_pred EEEcCCccCCCCcCcc--ccCCCCCcEEEccCCcccccchhhhhhcccCCCcc-ccCCCCccEEECCCCccccccccccc
Q 048333 115 TLNLGDVSIDSTIPHN--IKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS-LGNLSKLLHLDLSLNELQGEAASFRC 191 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~ 191 (413)
+|++++|.+.+..+.. +..+++|++|++++|.+. +..|.. +.++++|++|++++|.+++.
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 169 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRRFHVLDLTFNKVKSI------ 169 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTTCCEEECTTCCBSCC------
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCcccEEeCCCCccccc------
Confidence 5555555444322222 444455555555554443 122222 34445555555555544432
Q ss_pred cccccccccCC--CCccEEeCCCCcCCCcchhh--------hhCCCCCCEEEccCCcCcccCCcccC---CCCCCcEEEe
Q 048333 192 FGELPISMGNL--GSLKELDLSQNGFFGELPTS--------IRNLFSLEKLDLSFNKLSGEFPWSTG---NFSSLKLLNL 258 (413)
Q Consensus 192 ~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l 258 (413)
.+..+..+ .+++.|+++++.+....+.. +..+++|+.|++++|.+....+..+. ...+|+.|++
T Consensus 170 ---~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 170 ---CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp ---CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ---ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 11222222 34444555444443221111 12334455555555554433332221 1244555555
Q ss_pred cCCccccc----------cchhhc--cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCC
Q 048333 259 RSCGFWSK----------VPHSIG--NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV 326 (413)
Q Consensus 259 ~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 326 (413)
+++...+. ....+. ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 54432111 011111 126899999999999877788889999999999999999977788899999999
Q ss_pred EEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcch-HhhcCCCCc
Q 048333 327 VLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPN-FLENQNHLV 404 (413)
Q Consensus 327 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~ 404 (413)
+|++++|.+.+..+ . .+..+++|++|++++|.++.+ .+..+ .+++|++|++++|+++.+|. .+..+++|+
T Consensus 327 ~L~Ls~N~l~~~~~-~-~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 327 KLNLSQNFLGSIDS-R-MFENLDKLEVLDLSYNHIRAL------GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp EEECCSSCCCEECG-G-GGTTCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCccCCcCh-h-HhcCcccCCEEECCCCccccc------ChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 99999999975544 3 678899999999999995443 23333 67899999999999998775 468999999
Q ss_pred EEeCCCCCC
Q 048333 405 ILNLSDNRI 413 (413)
Q Consensus 405 ~L~l~~n~i 413 (413)
.|++++|++
T Consensus 399 ~L~l~~N~l 407 (455)
T 3v47_A 399 KIWLHTNPW 407 (455)
T ss_dssp EEECCSSCB
T ss_pred EEEccCCCc
Confidence 999999975
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-34 Score=285.79 Aligned_cols=203 Identities=22% Similarity=0.243 Sum_probs=153.5
Q ss_pred CCCccEEeCCCCcCCCc--chhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc-hhhccCCCCC
Q 048333 202 LGSLKELDLSQNGFFGE--LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP-HSIGNFTRLQ 278 (413)
Q Consensus 202 l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 278 (413)
+++|+.|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 44555555555554322 2555666777777777777665 345667778888888888887766555 5677888888
Q ss_pred eEecCCcccCCcccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeecc
Q 048333 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357 (413)
Q Consensus 279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 357 (413)
+|++++|.+....+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+..+ . .+..+++|++|+++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-G-VFDTLHRLQLLNMS 505 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-T-TTTTCTTCCEEECC
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-h-hhcccccCCEEECC
Confidence 888888888776777788888999999999988763 67788888999999999998886554 3 57788999999999
Q ss_pred Cccccccceeeecccccc-ccccceeeeccCCCCCCcchHhhcCC-CCcEEeCCCCCC
Q 048333 358 LNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPNFLENQN-HLVILNLSDNRI 413 (413)
Q Consensus 358 ~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~l~-~L~~L~l~~n~i 413 (413)
+|.++.+ .+..+ .+++|++|++++|+++.+|..+..++ +|+.|++++|++
T Consensus 506 ~N~l~~~------~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 506 HNNLLFL------DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp SSCCSCE------EGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCcCCCc------CHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 9985543 23333 67889999999999999998888887 599999999875
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-34 Score=288.50 Aligned_cols=340 Identities=14% Similarity=0.208 Sum_probs=279.0
Q ss_pred CCCceEEEecCCCccccc-----------------cCCccccc--cccccceeeccccCCCCCCCCcccc---CcCcccc
Q 048333 41 NTGHVIKLNLSHGCLFGS-----------------INSSSSLF--KLVHLKWLNLALNDFNSSEIPPEII---NLSRLEL 98 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~-----------------~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~---~L~~L~l 98 (413)
..+++++|++++|.+.+. +|. .+. ++++|++|++++|.+.+. +|..+. +|+.|++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINV 280 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEEC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEEC
Confidence 567999999999999875 666 777 999999999999998876 776655 5566677
Q ss_pred CCcc------hhhhhhcC------CCCcEEEcCCccCCCCcCc--cccCCCCCcEEEccCCcccccchhhhhhcccCCCc
Q 048333 99 QKPS------FENLFEKL------SNLKTLNLGDVSIDSTIPH--NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS 164 (413)
Q Consensus 99 ~~~~------i~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 164 (413)
..+. +|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+. +.+|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~-----------g~ip- 347 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE-----------GKLP- 347 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE-----------EECC-
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc-----------cchh-
Confidence 7664 56667665 99999999999998 7888 8999999999999999987 4677
Q ss_pred cccCCCCccEEECCCCccccccccccccccccccccCCCC-ccEEeCCCCcCCCcchhhhhCCC--CCCEEEccCCcCcc
Q 048333 165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS-LKELDLSQNGFFGELPTSIRNLF--SLEKLDLSFNKLSG 241 (413)
Q Consensus 165 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~ 241 (413)
.+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT----------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEEEEESEEECCSSEEE----------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hhCCCCCCCEEECCCCccc----------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 7888999999999999988 26778889999 999999999998 7777766654 89999999999987
Q ss_pred cCCcccC-------CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCC-------CCCcEEEcc
Q 048333 242 EFPWSTG-------NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL-------RSLEVIYIA 307 (413)
Q Consensus 242 ~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~L~ 307 (413)
..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.......+... ++|+.|+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 7887777 77899999999999964444456678999999999999884333333322 399999999
Q ss_pred CCccccccccccc--CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeee
Q 048333 308 KCNFSGQITSSLR--NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRG 384 (413)
Q Consensus 308 ~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~ 384 (413)
+|.++ .+|..+. .+++|+.|++++|.+.+ ++ . .+..+++|++|++++|+...-.......+..+ .+++|++|+
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip-~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP-T-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC-C-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC-h-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 99998 6777776 89999999999999987 44 2 57789999999996543111111444555555 789999999
Q ss_pred ccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 385 LRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 385 l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
+++|.++.+|..+. ++|+.|++++|++
T Consensus 573 Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 573 IGSNDIRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCSSCCCBCCSCCC--TTCCEEECCSCTT
T ss_pred CCCCcCCccCHhHh--CcCCEEECcCCCC
Confidence 99999999998765 8999999999975
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-33 Score=280.95 Aligned_cols=366 Identities=22% Similarity=0.221 Sum_probs=195.1
Q ss_pred CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch----hhhhhcCCCCc
Q 048333 42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF----ENLFEKLSNLK 114 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i----~~~~~~~~~L~ 114 (413)
..++++|++++|.+.+..+. .+..+++|++|++++|.+... .+. .+.+|+.|++.++.+ +..++.+++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 45789999999999876666 889999999999999988764 343 355677777776655 45688899999
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhh-------------hcccCCCccccCCCCcc--EEECCC
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLI-------------QISGRIPSSLGNLSKLL--HLDLSL 179 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-------------~~~~~~~~~l~~~~~L~--~L~l~~ 179 (413)
+|++++|.+.+..+..+.++++|++|++++|.+..++..... .+++..+..++.+++|+ .|++++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 999999998876567788899999999999988743110000 01111122233334444 444444
Q ss_pred Cccccccccccccc---------------------------------------cc-cccccCCC--CccEEeCCCCcCCC
Q 048333 180 NELQGEAASFRCFG---------------------------------------EL-PISMGNLG--SLKELDLSQNGFFG 217 (413)
Q Consensus 180 ~~i~~~~~~~~~~~---------------------------------------~~-~~~~~~l~--~L~~L~l~~~~~~~ 217 (413)
|.++...+...... .+ +..+..+. +++.|++++|.+..
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 44433221100000 00 00000000 34444555554443
Q ss_pred cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcc-ccccc
Q 048333 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDL-LGSIG 296 (413)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~ 296 (413)
..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... ...+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 34444555556666666665554 44555555556666666655554444444555555555555555443222 22244
Q ss_pred CCCCCcEEEccCCcccccc--cccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccce--------
Q 048333 297 NLRSLEVIYIAKCNFSGQI--TSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK-------- 366 (413)
Q Consensus 297 ~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-------- 366 (413)
.+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+ . .+..+++|++|++++|.++....
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-E-AFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-T-TTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-H-HhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 4555555555555544322 3344444555555555554443222 1 34444444444444444221100
Q ss_pred -----------eeecccccc-ccccceeeeccCCCCCC--c--chHhhcCCCCcEEeCCCCCC
Q 048333 367 -----------ATFDATTDT-TSQKIQYRGLRSCNLTK--F--PNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 367 -----------~~~~~~~~~-~~~~L~~L~l~~~~l~~--l--~~~~~~l~~L~~L~l~~n~i 413 (413)
.....+..+ .+++|++|++++|.++. + +..+..+++|+.|++++|++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 111112212 45566666666666552 1 23456666666666666653
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-33 Score=277.02 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=54.6
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCC--CCCccccCcCccccCCcchhh----hhhcCCCCc
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSS--EIPPEIINLSRLELQKPSFEN----LFEKLSNLK 114 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~----~~~~~~~L~ 114 (413)
..+++++|++++|.+.+..+. .+..+++|++|++++|.+... .....+.+|+.|++.++.+.. .+..+++|+
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAET--ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTT--TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred CccccCeeeCCCCcccccChh--hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence 345667777777666554444 566666666666666655542 111233444445555443322 122355555
Q ss_pred EEEcCCccCCCCcCccccCCCCCc--EEEccCCccc
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLT--FVSLRNCELQ 148 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~l~ 148 (413)
+|++++|.+.+..+..+..+++|+ +|++++|.+.
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 555555555544444455555555 4555555443
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-34 Score=262.57 Aligned_cols=272 Identities=24% Similarity=0.390 Sum_probs=192.7
Q ss_pred CCCCCCCCCCCCCCcc--cceEEeeCCC--CceEEEecCCCcccc--ccCCccccccccccceeeccc-cCCCCCCCCcc
Q 048333 17 TMASWKPEEGSVDCYS--WDVVHCNKNT--GHVIKLNLSHGCLFG--SINSSSSLFKLVHLKWLNLAL-NDFNSSEIPPE 89 (413)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~ 89 (413)
.+++|.+ +.+||. |.||.|.... +++++|+++++.+.+ .++. .+..+++|++|++++ |.+.+. +
T Consensus 23 ~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~--- 93 (313)
T 1ogq_A 23 TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-I--- 93 (313)
T ss_dssp GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-C---
T ss_pred cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCccccc-C---
Confidence 6789987 788999 9999997543 789999999998887 5665 788888888888884 666543 3
Q ss_pred ccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCC
Q 048333 90 IINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169 (413)
Q Consensus 90 ~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~ 169 (413)
|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+. +.+|..+..+
T Consensus 94 --------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----------~~~p~~~~~l 148 (313)
T 1ogq_A 94 --------------PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-----------GTLPPSISSL 148 (313)
T ss_dssp --------------CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-----------SCCCGGGGGC
T ss_pred --------------ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-----------CcCChHHhcC
Confidence 334667888888888888887777777888888888888888776 4566777777
Q ss_pred CCccEEECCCCccccccccccccccccccccCCC-CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccC
Q 048333 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLG-SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTG 248 (413)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 248 (413)
++|++|++++|.+++. +|..+..++ .|+.|++++|.+...+|..+..+.
T Consensus 149 ~~L~~L~L~~N~l~~~---------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--------------------- 198 (313)
T 1ogq_A 149 PNLVGITFDGNRISGA---------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--------------------- 198 (313)
T ss_dssp TTCCEEECCSSCCEEE---------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC---------------------
T ss_pred CCCCeEECcCCcccCc---------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc---------------------
Confidence 7777777777776633 455555555 666666666655544444444443
Q ss_pred CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEE
Q 048333 249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVL 328 (413)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 328 (413)
|+.|++++|.+.+..+..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 199 ----L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 199 ----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp ----CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred ----ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 4555555554444445555555666666666666553332 25566778888888888777777777788888888
Q ss_pred ECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 329 DMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 329 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
++++|.+.+.++ ....+++|+.+++++|+
T Consensus 274 ~Ls~N~l~~~ip---~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIP---QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECC---CSTTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCC---CCccccccChHHhcCCC
Confidence 888888877666 23677888888888887
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.5e-33 Score=280.05 Aligned_cols=337 Identities=16% Similarity=0.217 Sum_probs=270.5
Q ss_pred CCCceEEEecCCCcccc-----------------ccCCccccc--cccccceeeccccCCCCCCCCcccc---CcCcccc
Q 048333 41 NTGHVIKLNLSHGCLFG-----------------SINSSSSLF--KLVHLKWLNLALNDFNSSEIPPEII---NLSRLEL 98 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~-----------------~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~---~L~~L~l 98 (413)
..++++.|+|++|.+.+ .+|. .+. .+++|++|++++|.+.+. +|..+. +|+.|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence 56789999999999987 2666 666 999999999999998876 776655 5666677
Q ss_pred CCcc------hhhhhhcCC-------CCcEEEcCCccCCCCcCc--cccCCCCCcEEEccCCcccccchhhhhhcccCCC
Q 048333 99 QKPS------FENLFEKLS-------NLKTLNLGDVSIDSTIPH--NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163 (413)
Q Consensus 99 ~~~~------i~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 163 (413)
..+. +|..+..++ +|++|++++|.+. .+|. .+.++++|++|++++|.+. .+|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~------------~lp 589 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR------------HLE 589 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC------------BCC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc------------cch
Confidence 7664 566565554 9999999999998 7888 8999999999999999986 456
Q ss_pred ccccCCCCccEEECCCCccccccccccccccccccccCCCC-ccEEeCCCCcCCCcchhhhhCCC--CCCEEEccCCcCc
Q 048333 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS-LKELDLSQNGFFGELPTSIRNLF--SLEKLDLSFNKLS 240 (413)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~ 240 (413)
.+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE----------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS----------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred -hhcCCCcceEEECcCCccc----------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence 7889999999999999988 26777888998 999999999987 6777776664 4999999999987
Q ss_pred ccCCcc---cC--CCCCCcEEEecCCccccccchh-hccCCCCCeEecCCcccCCcccccc-cC-------CCCCcEEEc
Q 048333 241 GEFPWS---TG--NFSSLKLLNLRSCGFWSKVPHS-IGNFTRLQFLFLGFNNFSGDLLGSI-GN-------LRSLEVIYI 306 (413)
Q Consensus 241 ~~~~~~---l~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l-~~-------~~~L~~L~L 306 (413)
+..|.. +. ..++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.. ++..+ .. +++|+.|++
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEEC
Confidence 654432 22 3458999999999996 45544 4588999999999999884 34333 22 239999999
Q ss_pred cCCccccccccccc--CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceee
Q 048333 307 AKCNFSGQITSSLR--NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYR 383 (413)
Q Consensus 307 ~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L 383 (413)
++|.++ .+|..+. .+++|+.|++++|.+.+ ++ . .+..+++|+.|++++|+...-.......|..+ .+++|++|
T Consensus 736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP-T-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC-C-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc-h-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 999998 6777776 89999999999999987 34 2 57799999999998743111111444555555 78999999
Q ss_pred eccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 384 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
++++|.+..+|..+. ++|+.|+|++|+|
T Consensus 812 ~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 812 QIGSNDIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp ECCSSCCCBCCSCCC--SSSCEEECCSCTT
T ss_pred ECCCCCCCccCHhhc--CCCCEEECCCCCC
Confidence 999999999998764 7999999999986
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=258.87 Aligned_cols=306 Identities=19% Similarity=0.159 Sum_probs=226.4
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCcc
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVS 122 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~ 122 (413)
++++.++++++.+...... .+..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~--~~~~l~~L~~L~L~~n~i~~~------------------~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEI------------------DTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp CCCSEEEEESCEESEECTH--HHHHCCCCSEEECTTSCCCEE------------------CTTTTTTCTTCCEEECCSSC
T ss_pred CCceEEEecCCchhhCChh--HhcccccCcEEECCCCccccc------------------ChhhccCCCCcCEEECCCCC
Confidence 3445555555544322211 344555555555555544321 12346778899999999998
Q ss_pred CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCc-cccCCCCccEEECCCCccccccccccccccccccccC
Q 048333 123 IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGN 201 (413)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~ 201 (413)
+.+..|..+..+++|++|++++|.+. .+|. .+.++++|++|++++|.++.. .+..+..
T Consensus 105 l~~~~~~~~~~l~~L~~L~L~~n~l~------------~l~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~ 163 (390)
T 3o6n_A 105 IRYLPPHVFQNVPLLTVLVLERNDLS------------SLPRGIFHNTPKLTTLSMSNNNLERI---------EDDTFQA 163 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCBC---------CTTTTSS
T ss_pred CCcCCHHHhcCCCCCCEEECCCCccC------------cCCHHHhcCCCCCcEEECCCCccCcc---------ChhhccC
Confidence 88777777888899999999998876 3343 357888999999999888754 3455778
Q ss_pred CCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281 (413)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 281 (413)
+++|++|++++|.+... .+..+++|+.+++++|.+.. +...++|+.|++++|.+... +. ...++|+.|+
T Consensus 164 l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ 232 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILK 232 (390)
T ss_dssp CTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEE
T ss_pred CCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEE
Confidence 88999999998888643 25667889999998887653 23346789999999887433 32 2357899999
Q ss_pred cCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333 282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361 (413)
Q Consensus 282 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i 361 (413)
+++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+... ....+++|++|++++|.+
T Consensus 233 l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL---YGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC---SSSCCTTCCEEECCSSCC
T ss_pred CCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc---ccCCCCCCCEEECCCCcc
Confidence 999988753 567888999999999999987778888899999999999999876443 456788999999999987
Q ss_pred cccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 362 SVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
+.++.... .+++|++|++++|.++.++ +..+++|+.|++++|++
T Consensus 308 ~~~~~~~~------~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 308 LHVERNQP------QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCGGGHH------HHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred eecCcccc------ccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence 65433221 5678999999999999776 67789999999999974
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-31 Score=269.88 Aligned_cols=356 Identities=22% Similarity=0.237 Sum_probs=203.4
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch---hh-hhhcCCCCcE
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF---EN-LFEKLSNLKT 115 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i---~~-~~~~~~~L~~ 115 (413)
+++++|++++|.+.+..+. .+..+++|++|++++|.+... .+. .+.+|+.|++.++.+ +. .++++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 4677777777776654443 567777777777777766654 333 244555566654433 22 3566677777
Q ss_pred EEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccc----------
Q 048333 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE---------- 185 (413)
Q Consensus 116 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---------- 185 (413)
|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++..
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-----------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-----------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccc-----------cCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 7777776665555566667777777777766552 2233344444444444444443322
Q ss_pred ----------------ccc-cc-----------------------------------------ccccccccccCCC--Cc
Q 048333 186 ----------------AAS-FR-----------------------------------------CFGELPISMGNLG--SL 205 (413)
Q Consensus 186 ----------------~~~-~~-----------------------------------------~~~~~~~~~~~l~--~L 205 (413)
.+. +. ..+..|..+..++ +|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 110 00 0001122333332 36
Q ss_pred cEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc-----ccc----hhhccCCC
Q 048333 206 KELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS-----KVP----HSIGNFTR 276 (413)
Q Consensus 206 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~----~~~~~~~~ 276 (413)
++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++...+ ..| ..+..+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 666666666655555566666777777777666654455445555555555554432211 111 13444555
Q ss_pred CCeEecCCcccCCcccccccCCCCCcEEEc----------------------------cCCcccccccccccCCCCCCEE
Q 048333 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYI----------------------------AKCNFSGQITSSLRNLTQLVVL 328 (413)
Q Consensus 277 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L----------------------------~~~~~~~~~~~~~~~~~~L~~L 328 (413)
|++|++++|.+.+..+..+..+++|+.|++ ++|.+++..+..+..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 566666655555444444444444444444 4444444445566777888888
Q ss_pred ECCCCcCcceechhHhhhcccCCCeeeccCccccccceee--------------------ecccccc-ccccceeeeccC
Q 048333 329 DMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKAT--------------------FDATTDT-TSQKIQYRGLRS 387 (413)
Q Consensus 329 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~--------------------~~~~~~~-~~~~L~~L~l~~ 387 (413)
++++|.+.+..+.. .+.++++|++|++++|.+..+.... ...+... .+++|++|++++
T Consensus 411 ~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 411 DLGLNEIGQELTGQ-EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp ECCSSCCEEECCSG-GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred eCCCCcCccccCcc-cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 88888776555422 5677777788887777754432211 1122223 677888899998
Q ss_pred CCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333 388 CNLTKFP-NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 388 ~~l~~l~-~~~~~l~~L~~L~l~~n~i 413 (413)
|.++.+| ..+.++++|+.|++++|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCc
Confidence 8888665 4578889999999988875
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-32 Score=270.93 Aligned_cols=348 Identities=20% Similarity=0.214 Sum_probs=205.4
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch----hhhhhcCCCCcE
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF----ENLFEKLSNLKT 115 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i----~~~~~~~~~L~~ 115 (413)
+++++|++++|.+.+..+. .+..+++|++|++++|++... .+. .+.+|+.|++..+.+ +..++.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 5899999999998876666 899999999999999988764 333 455677778876655 345889999999
Q ss_pred EEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC-ccccCCCCccEEECCCCcccccccc-ccc-
Q 048333 116 LNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP-SSLGNLSKLLHLDLSLNELQGEAAS-FRC- 191 (413)
Q Consensus 116 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~-~~~- 191 (413)
|++++|.+.+ ..|..+.++++|++|++++|.+. +.++ ..+.++++|++|++++|.+++..+. +..
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----------SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccc-----------cccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 9999999875 35677899999999999999743 2233 4677788888888888887754221 100
Q ss_pred ------------ccccccc-ccCCCCccEEeCCCCcCCCcc--h-----------------------------hhhhCCC
Q 048333 192 ------------FGELPIS-MGNLGSLKELDLSQNGFFGEL--P-----------------------------TSIRNLF 227 (413)
Q Consensus 192 ------------~~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~-----------------------------~~l~~~~ 227 (413)
.+.+|.. +..+++|+.|++++|.+.... + ..+..++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 0011111 123566666666666554310 0 0001111
Q ss_pred CCCE-----------------------------------------------------------EEccCCcCcccCCccc-
Q 048333 228 SLEK-----------------------------------------------------------LDLSFNKLSGEFPWST- 247 (413)
Q Consensus 228 ~L~~-----------------------------------------------------------L~l~~~~~~~~~~~~l- 247 (413)
+|+. |++++|.+. .+|..+
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~ 330 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS 330 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHH
Confidence 1111 112111111 111111
Q ss_pred CCCCCCcEEEecCCccccccch---hhccCCCCCeEecCCcccCCccc--ccccCCCCCcEEEccCCcccccccccccCC
Q 048333 248 GNFSSLKLLNLRSCGFWSKVPH---SIGNFTRLQFLFLGFNNFSGDLL--GSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322 (413)
Q Consensus 248 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 322 (413)
..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+... ..+..+++|+.|++++|.++ .+|..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 1344555555555554333221 13444555555555555543211 23444555555555555554 344444445
Q ss_pred CCCCEEECCCCcCcceech---------------hHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccC
Q 048333 323 TQLVVLDMAQNSYGGTVEL---------------DVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRS 387 (413)
Q Consensus 323 ~~L~~L~l~~n~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~ 387 (413)
++|++|++++|.+...... ......+++|++|++++|.++.++.. ..+++|++|++++
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~-------~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-------SLFPVLLVMKISR 482 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-------GGCTTCCEEECCS
T ss_pred ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-------ccCccCCEEecCC
Confidence 5555555555544321110 00112566777777777776554431 2467888888888
Q ss_pred CCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333 388 CNLTKFP-NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 388 ~~l~~l~-~~~~~l~~L~~L~l~~n~i 413 (413)
|+++.+| ..+..+++|+.|++++|++
T Consensus 483 N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 483 NQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CccCCcCHHHHhcCcccCEEEecCCCc
Confidence 8888554 4578888999999988874
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=263.35 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=199.3
Q ss_pred CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCc
Q 048333 42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDV 121 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~ 121 (413)
..+++.|++++|.+.+..+. .+..+++|++|++++|.+... . +..+..+++|++|++++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~-----------------~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-E-----------------PGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp CTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-C-----------------TTTTTTCTTCCEEECCSS
T ss_pred CCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-C-----------------hhhhhCCccCCEEECCCC
Confidence 34678888888877765555 777888888888888766543 1 234556677777777777
Q ss_pred cCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccC
Q 048333 122 SIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGN 201 (413)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~ 201 (413)
.+....+..+.++++|++|++++|.+. +..+..+.++++|+.|++++|.+... .+..+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~ 150 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIV-----------ILLDYMFQDLYNLKSLEVGDNDLVYI---------SHRAFSG 150 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEEECCTTCCEE---------CTTSSTT
T ss_pred cCCccCcccccCCCCCCEEECCCCccc-----------cCChhHccccccCCEEECCCCcccee---------ChhhccC
Confidence 776554455667777777777777765 23445566777777777777766643 2345666
Q ss_pred CCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281 (413)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 281 (413)
+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|+.|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 77777777777777655555667777777777777776655555666677777777777665555555555555777777
Q ss_pred cCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333 282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361 (413)
Q Consensus 282 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i 361 (413)
+++|.+.......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.+
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-Y-AFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-T-TBTTCTTCCEEECCSSCC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-H-HhcCcccCCEEECCCCcC
Confidence 77777665444556667777777777777765555566677777777777777665433 2 566677777777777775
Q ss_pred cccceeeeccccccccccceeeeccCCCCC
Q 048333 362 SVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
+.+++..+. .+++|++|++++|.+.
T Consensus 309 ~~~~~~~~~-----~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 309 TTLEESVFH-----SVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCCGGGBS-----CGGGCCEEECCSSCEE
T ss_pred ceeCHhHcC-----CCcccCEEEccCCCcc
Confidence 554332211 3556777777777655
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-31 Score=245.56 Aligned_cols=303 Identities=21% Similarity=0.278 Sum_probs=246.5
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCC
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~ 120 (413)
..+++++|+++++.+... + .+..+++|++|++++|.+... +. +..+++|++|++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~--~~~~~~~L~~L~l~~n~i~~~-------------------~~-~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--Q--GIEYLTNLEYLNLNGNQITDI-------------------SP-LSNLVKLTNLYIGT 97 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--T--TGGGCTTCCEEECCSSCCCCC-------------------GG-GTTCTTCCEEECCS
T ss_pred hcccccEEEEeCCccccc--h--hhhhcCCccEEEccCCccccc-------------------hh-hhcCCcCCEEEccC
Confidence 456889999999877542 2 578899999999998877643 12 67799999999999
Q ss_pred ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccccc
Q 048333 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG 200 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 200 (413)
|.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|+.|++++|..... +..+.
T Consensus 98 n~i~~-~~-~~~~l~~L~~L~l~~n~i~~------------~~~-~~~l~~L~~L~l~~n~~~~~----------~~~~~ 152 (347)
T 4fmz_A 98 NKITD-IS-ALQNLTNLRELYLNEDNISD------------ISP-LANLTKMYSLNLGANHNLSD----------LSPLS 152 (347)
T ss_dssp SCCCC-CG-GGTTCTTCSEEECTTSCCCC------------CGG-GTTCTTCCEEECTTCTTCCC----------CGGGT
T ss_pred CcccC-ch-HHcCCCcCCEEECcCCcccC------------chh-hccCCceeEEECCCCCCccc----------ccchh
Confidence 99875 43 58899999999999999873 333 78899999999999964432 23478
Q ss_pred CCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeE
Q 048333 201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280 (413)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 280 (413)
.+++|+.|++++|.+.... . +..+++|+.|++++|.+... +. +..+++|+.+++++|.+.+..+ +..+++|++|
T Consensus 153 ~l~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hCCCCcEEEecCCCcCCch-h-hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence 8999999999999986433 3 78999999999999988743 33 7788999999999998855443 7889999999
Q ss_pred ecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 281 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.
T Consensus 227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S---VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G---GGGGCTTCSEEECCSSC
T ss_pred EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h---hhcCCCCCCEEECcCCc
Confidence 999999985433 88899999999999998743 4678899999999999998864 3 57889999999999999
Q ss_pred ccccceeeecccccc-ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 361 SSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 361 i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
++... +..+ .+++|++|++++|.++.++. +..+++|+.|++++|+|
T Consensus 299 l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 299 LGNED------MEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCGGG------HHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCCcC------hhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 65432 2223 67899999999999997766 88999999999999986
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=266.88 Aligned_cols=156 Identities=23% Similarity=0.253 Sum_probs=94.3
Q ss_pred CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccc-ccccCCCCCcEEEccCCcccccccccccCCCCCCE
Q 048333 249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVV 327 (413)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 327 (413)
.+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 34444444444444422222 24455555555555555543322 34555666666666666666555666666777777
Q ss_pred EECCCCcCc-ceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCc
Q 048333 328 LDMAQNSYG-GTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLV 404 (413)
Q Consensus 328 L~l~~n~~~-~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~ 404 (413)
|++++|.+. +..+ . .+..+++|++|++++|.++. ..+..+ .+++|++|++++|+++.+| ..+.++++|+
T Consensus 450 L~l~~n~l~~~~~p-~-~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 450 LKMAGNSFQENFLP-D-IFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp EECTTCEEGGGEEC-S-CCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EECcCCcCccccch-h-hhhcccCCCEEECCCCcccc------CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 777777665 2333 2 56667777777777777433 223233 5678888888888888555 4577888888
Q ss_pred EEeCCCCCC
Q 048333 405 ILNLSDNRI 413 (413)
Q Consensus 405 ~L~l~~n~i 413 (413)
.|++++|++
T Consensus 522 ~L~l~~N~~ 530 (570)
T 2z63_A 522 KIWLHTNPW 530 (570)
T ss_dssp EEECCSSCB
T ss_pred EEEecCCcc
Confidence 888888864
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=264.00 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=71.6
Q ss_pred hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccc
Q 048333 104 ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ 183 (413)
Q Consensus 104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 183 (413)
+..+..+++|++|++++|.++ .+|.. .+++|++|++++|.++.+ .+|..++++++|++|++++|.++
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~----------~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDAL----------PICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSC----------CCCGGGGGCTTCCEEEEEESSCC
T ss_pred hHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccc----------cchhhhccCCcceEEEecCcccc
Confidence 456888999999999999997 56665 799999999999998731 46788999999999999999987
Q ss_pred cccccccccccccccccCCCCc--cEEeCCCCcC
Q 048333 184 GEAASFRCFGELPISMGNLGSL--KELDLSQNGF 215 (413)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 215 (413)
.. .+..+++| +.|++++|.+
T Consensus 129 ~~------------~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 129 KS------------SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GG------------GGGGGTTSCEEEEEEEECTT
T ss_pred hh------------hccccccceeeEEEeecccc
Confidence 42 34556677 9999999887
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=267.15 Aligned_cols=341 Identities=20% Similarity=0.233 Sum_probs=225.2
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCcc---ccCcCccccCCcchhhh-hhcCCCCcEEEc
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPE---IINLSRLELQKPSFENL-FEKLSNLKTLNL 118 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~-~~~~~~L~~L~l 118 (413)
+++++|++++|.+.+..+. .+..+++|++|++++|++... .+.. +.+|+.|++..+.+... ...+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEEC
T ss_pred ccccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCccccCCccEEec
Confidence 6899999999998766555 789999999999999988764 3443 45677777886666432 117899999999
Q ss_pred CCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCc--cEEECCCCcc--ccccc-ccccc
Q 048333 119 GDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL--LHLDLSLNEL--QGEAA-SFRCF 192 (413)
Q Consensus 119 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~i--~~~~~-~~~~~ 192 (413)
++|.+.+ .+|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ ....+ .+...
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--------------hhccccccceeeEEEeeccccccccccccccccc
Confidence 9999986 478899999999999999998862 335566677 9999999988 43322 11100
Q ss_pred ---------------cccc-ccccCCC-----------------------------------------------------
Q 048333 193 ---------------GELP-ISMGNLG----------------------------------------------------- 203 (413)
Q Consensus 193 ---------------~~~~-~~~~~l~----------------------------------------------------- 203 (413)
+.++ ..+..++
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 0000 0111222
Q ss_pred ----CccEEeCCCCcCCCcchhhh-----hCCCCC--------------------------CEEEccCCcCcccCCcccC
Q 048333 204 ----SLKELDLSQNGFFGELPTSI-----RNLFSL--------------------------EKLDLSFNKLSGEFPWSTG 248 (413)
Q Consensus 204 ----~L~~L~l~~~~~~~~~~~~l-----~~~~~L--------------------------~~L~l~~~~~~~~~~~~l~ 248 (413)
+|++|++++|.+.+.+|..+ ..+++| +.|++++|.+... + ...
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~ 321 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPS 321 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCS
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc-c-chh
Confidence 33444444443332333333 223222 2222222222110 0 014
Q ss_pred CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCC--cccccccCCCCCcEEEccCCcccccccc-cccCCCCC
Q 048333 249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQL 325 (413)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L 325 (413)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+++.+|. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 56677777777777766666667777777777777777764 3345566777777777777777753443 46667777
Q ss_pred CEEECCCCcCcceechhHhhhcc-cCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchH-hhcCCCC
Q 048333 326 VVLDMAQNSYGGTVELDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF-LENQNHL 403 (413)
Q Consensus 326 ~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L 403 (413)
+.|++++|.+.+..+ ..+ ++|++|++++|.++.++...+ .+++|++|++++|+++.+|.. +..+++|
T Consensus 402 ~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N~l~~ip~~~~------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 402 LSLNMSSNILTDTIF-----RCLPPRIKVLDLHSNKIKSIPKQVV------KLEALQELNVASNQLKSVPDGIFDRLTSL 470 (520)
T ss_dssp CEEECCSSCCCGGGG-----GSCCTTCCEEECCSSCCCCCCGGGG------GCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECcCCCCCcchh-----hhhcccCCEEECCCCcccccchhhh------cCCCCCEEECCCCcCCccCHHHhccCCcc
Confidence 788887777764333 122 578888888887654433222 567888999999988888876 7888899
Q ss_pred cEEeCCCCCC
Q 048333 404 VILNLSDNRI 413 (413)
Q Consensus 404 ~~L~l~~n~i 413 (413)
+.|++++|++
T Consensus 471 ~~L~l~~N~~ 480 (520)
T 2z7x_B 471 QKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCB
T ss_pred cEEECcCCCC
Confidence 9999988875
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-32 Score=267.49 Aligned_cols=332 Identities=19% Similarity=0.164 Sum_probs=239.1
Q ss_pred CCCCCCCCCCCCCCCCcc----cceEEeeC----------------CCCceEEEecCCCccccccCCcccccccccccee
Q 048333 15 RPTMASWKPEEGSVDCYS----WDVVHCNK----------------NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWL 74 (413)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 74 (413)
.-.+++|.+ +.+||. |.++.|.. ...+++.++++++.+....+. .+..+++|++|
T Consensus 6 ~~~l~~~~~---~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L 80 (597)
T 3oja_B 6 RYNVKPRQP---EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELL 80 (597)
T ss_dssp -----CCCS---EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTH--HHHHCCCCSEE
T ss_pred cccccCCCC---CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHH--HHccCCCCcEE
Confidence 345577876 566664 66655531 113456666666655433222 45566677777
Q ss_pred eccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhh
Q 048333 75 NLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF 154 (413)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 154 (413)
++++|.+... . +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..
T Consensus 81 ~L~~n~l~~~-~-----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----- 137 (597)
T 3oja_B 81 NLNDLQIEEI-D-----------------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS----- 137 (597)
T ss_dssp ECTTSCCCEE-C-----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred ECCCCCCCCC-C-----------------hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-----
Confidence 7776665532 1 2346778889999999888887777778888999999999888762
Q ss_pred hhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEc
Q 048333 155 LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDL 234 (413)
Q Consensus 155 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (413)
..+..+.++++|++|++++|.++.. .|..+..+++|+.|++++|.+... .+..+++|+.|++
T Consensus 138 ------l~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 138 ------LPRGIFHNTPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCCBC---------CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred ------CCHHHhccCCCCCEEEeeCCcCCCC---------ChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 2233457888899999998888754 445678888899999988887643 2556788888988
Q ss_pred cCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccc
Q 048333 235 SFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ 314 (413)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 314 (413)
++|.+.. +...++|+.|++++|.+....+. ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+++.
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred ccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence 8887653 23446788999988887433222 23689999999998875 46677889999999999999877
Q ss_pred ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcc
Q 048333 315 ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP 394 (413)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 394 (413)
.|..+..+++|+.|++++|.+.+... ....+++|++|++++|.++.++.... .+++|++|++++|.++.+|
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~Ls~N~l~~i~~~~~------~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVALNL---YGQPIPTLKVLDLSHNHLLHVERNQP------QFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCEEEC---SSSCCTTCCEEECCSSCCCCCGGGHH------HHTTCSEEECCSSCCCCCC
T ss_pred CHHHhcCccCCCEEECCCCCCCCCCc---ccccCCCCcEEECCCCCCCccCcccc------cCCCCCEEECCCCCCCCcC
Confidence 78888899999999999998886443 45678899999999998665432221 5778999999999998776
Q ss_pred hHhhcCCCCcEEeCCCCCC
Q 048333 395 NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 395 ~~~~~l~~L~~L~l~~n~i 413 (413)
+..+++|+.|++++|++
T Consensus 341 --~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp --CCTTCCCSEEECCSSCE
T ss_pred --hhhcCCCCEEEeeCCCC
Confidence 66789999999999874
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=280.67 Aligned_cols=343 Identities=20% Similarity=0.238 Sum_probs=248.6
Q ss_pred ccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCC-Cc---cccCcCccccCCcch----
Q 048333 32 SWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEI-PP---EIINLSRLELQKPSF---- 103 (413)
Q Consensus 32 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~~~i---- 103 (413)
.|..|-+ .++++++|+|++|.+....+. .+..+++|++|++++|..... + +. .+.+|+.|++.++.+
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3444433 567999999999999877666 899999999999999965443 3 33 344566667765554
Q ss_pred hhhhhcCCCCcEEEcCCccCCCCcCcc--ccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCc
Q 048333 104 ENLFEKLSNLKTLNLGDVSIDSTIPHN--IKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE 181 (413)
Q Consensus 104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 181 (413)
+..++++++|++|++++|.+.+.++.. +.++++|++|++++|.+..+ ..+..+.++++|+.|++++|.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----------~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----------YLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----------CCCGGGGTCSSCCEEEEESSC
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc----------ccchhHhhCCCCCEEECCCCc
Confidence 556778888888888888887655544 77888888888888887631 223567888888888888888
Q ss_pred cccccccccccccccccccCC--CCccEEeCCCCcCCCcchhhhhCCCC------CCEEEccCCcCcccCCcccC-----
Q 048333 182 LQGEAASFRCFGELPISMGNL--GSLKELDLSQNGFFGELPTSIRNLFS------LEKLDLSFNKLSGEFPWSTG----- 248 (413)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~----- 248 (413)
++.. .+..+..+ ++|+.|+++.|.+....+..+..+++ |+.|++++|.+....+..+.
T Consensus 160 i~~~---------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 160 IFLV---------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CCCC---------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CCee---------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 7754 33445544 77888888888877666665555554 88888888865433222111
Q ss_pred -------------------------------C--CCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc
Q 048333 249 -------------------------------N--FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI 295 (413)
Q Consensus 249 -------------------------------~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 295 (413)
. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 1 2568888888887766666777788888888888888776666677
Q ss_pred cCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc
Q 048333 296 GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT 375 (413)
Q Consensus 296 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~ 375 (413)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+ . .+..+++|++|++++|.++.++.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~-~~~~l~~L~~L~Ls~N~l~~i~~--------- 379 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-Q-TFKFLEKLQTLDLRDNALTTIHF--------- 379 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-S-CSCSCCCCCEEEEETCCSCCCSS---------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh-h-hhcCCCCCCEEECCCCCCCcccC---------
Confidence 778888888888888876667778888888888888887764333 2 56778888888888888654332
Q ss_pred ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 376 TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 376 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
+++|+.|++++|+++.+|.. ..+++.|++++|++
T Consensus 380 -~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 380 -IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRL 413 (844)
T ss_dssp -CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCC
T ss_pred -CCCcchhccCCCCccccccc---ccccceeecccCcc
Confidence 46788888888888877753 56788888888864
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-32 Score=266.63 Aligned_cols=359 Identities=21% Similarity=0.225 Sum_probs=245.7
Q ss_pred CCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCC---ccccCcCccccCCcchhh----hhhcCCC
Q 048333 40 KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSFEN----LFEKLSN 112 (413)
Q Consensus 40 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~----~~~~~~~ 112 (413)
...+++++|++++|.+.+..+. .+..+++|++|++++|.+... .+ ..+.+|+.|++..+.+.. .++.+++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred hCCCCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCcccccccc
Confidence 3567899999999988765555 788999999999999987654 22 345667777777665543 3778899
Q ss_pred CcEEEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhh-----------------cccCCCccccCCCCccE
Q 048333 113 LKTLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ-----------------ISGRIPSSLGNLSKLLH 174 (413)
Q Consensus 113 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----------------~~~~~~~~l~~~~~L~~ 174 (413)
|++|++++|.+.+ .+|..+.++++|++|++++|.+..++...+.. +++..+..+.. .+|+.
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~ 204 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK 204 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-Cccee
Confidence 9999999998876 46888999999999999999877542211000 00111111111 13444
Q ss_pred EECCCCccccc-------------------------------cc-cc-----------------cccccccccccCCCCc
Q 048333 175 LDLSLNELQGE-------------------------------AA-SF-----------------RCFGELPISMGNLGSL 205 (413)
Q Consensus 175 L~l~~~~i~~~-------------------------------~~-~~-----------------~~~~~~~~~~~~l~~L 205 (413)
|++++|..... .. .+ ...+..+..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 44333310000 00 00 0111233444455555
Q ss_pred cEEeCCCCcCCCcchhhhh--------------------CCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333 206 KELDLSQNGFFGELPTSIR--------------------NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265 (413)
Q Consensus 206 ~~L~l~~~~~~~~~~~~l~--------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 265 (413)
+.|+++++.+. .+|..+. .+++|+.|++++|......+. ..+++|+.|++++|.+.+
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBE
T ss_pred cEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCc
Confidence 55555555443 2333333 344555555555544332222 567899999999998854
Q ss_pred cc--chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccc-ccccCCCCCCEEECCCCcCcceechh
Q 048333 266 KV--PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVELD 342 (413)
Q Consensus 266 ~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~ 342 (413)
.. +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ .
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 439 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-G 439 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-T
T ss_pred cccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-h
Confidence 43 67788999999999999988754 3348889999999999999986544 567889999999999999876554 3
Q ss_pred HhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCc-chHhhcCCCCcEEeCCCCCC
Q 048333 343 VLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 343 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i 413 (413)
.+..+++|++|++++|.+.. ...+..+ .+++|++|++++|+++.+ |..+..+++|+.|++++|+|
T Consensus 440 -~~~~l~~L~~L~l~~n~l~~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 440 -IFNGLSSLEVLKMAGNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp -TTTTCTTCCEEECTTCEEGG-----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -hhhcCCcCcEEECcCCcCcc-----ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 67889999999999998431 2233334 788999999999999965 78899999999999999975
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-31 Score=268.37 Aligned_cols=281 Identities=23% Similarity=0.279 Sum_probs=195.6
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC-cccc--CCCCccEEECCCCccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP-SSLG--NLSKLLHLDLSLNELQ 183 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~l~--~~~~L~~L~l~~~~i~ 183 (413)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..++ ..+. ..+.|+.|++++|.++
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~----------~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL----------RTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC----------CEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh----------hhcchhhhcccccCcCceEECCCCCCC
Confidence 4445555555555555554444445555555555555544221 0000 1111 1235555666665555
Q ss_pred cccccccccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333 184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG 262 (413)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 262 (413)
.. .|..+..+++|+.|++++|.+...++ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 395 ~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 395 KI---------ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EE---------CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred eE---------ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 33 35567788888888888888765444 567888888888888888776677778888888889888887
Q ss_pred cc--cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccc--------ccccCCCCCCEEECCC
Q 048333 263 FW--SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT--------SSLRNLTQLVVLDMAQ 332 (413)
Q Consensus 263 ~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~--------~~~~~~~~L~~L~l~~ 332 (413)
+. +..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 64 4567778888999999999998887666678888999999999998874321 2367788999999999
Q ss_pred CcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcch-Hhh-cCCCCcEEeCCC
Q 048333 333 NSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPN-FLE-NQNHLVILNLSD 410 (413)
Q Consensus 333 n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~-~l~~L~~L~l~~ 410 (413)
|.+. .++.. .+.++++|++|++++|.++.+++..+. .+++|++|++++|+++.++. .+. .+++|+.|++++
T Consensus 546 N~l~-~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 546 NGFD-EIPVE-VFKDLFELKIIDLGLNNLNTLPASVFN-----NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp SCCC-CCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCC-CCCHH-HcccccCcceeECCCCCCCcCCHhHhC-----CCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 9887 34423 678899999999999987654433221 56789999999999996654 455 689999999999
Q ss_pred CCC
Q 048333 411 NRI 413 (413)
Q Consensus 411 n~i 413 (413)
|++
T Consensus 619 N~~ 621 (680)
T 1ziw_A 619 NPF 621 (680)
T ss_dssp CCC
T ss_pred CCc
Confidence 875
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=257.74 Aligned_cols=299 Identities=20% Similarity=0.230 Sum_probs=254.0
Q ss_pred cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333 69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 148 (413)
+++++|++++|.+... . +..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+.
T Consensus 32 ~~l~~L~L~~n~l~~~-~-----------------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-N-----------------QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TTCSEEECCSSCCCEE-C-----------------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEECCCCccceE-C-----------------HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 6899999999987653 1 234778999999999999998877889999999999999999987
Q ss_pred ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333 149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS 228 (413)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 228 (413)
. ..+..+.++++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+++
T Consensus 94 ~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 94 L-----------IPLGVFTGLSNLTKLDISENKIVIL---------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp S-----------CCTTSSTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred c-----------cCcccccCCCCCCEEECCCCccccC---------ChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 3 2334578899999999999998864 4567889999999999999998777788999999
Q ss_pred CCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccC
Q 048333 229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308 (413)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 308 (413)
|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|+.|++++
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 99999999999866666788999999999999998777777899999999999999987666666555667999999999
Q ss_pred CcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccC
Q 048333 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRS 387 (413)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~ 387 (413)
|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.++.+. +..+ .+++|++|++++
T Consensus 234 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-S-MLHELLRLQEIQLVGGQLAVVE------PYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-T-SCTTCTTCCEEECCSSCCSEEC------TTTBTTCTTCCEEECCS
T ss_pred CcccccCHHHhcCccccCeeECCCCcCCccCh-h-hccccccCCEEECCCCccceEC------HHHhcCcccCCEEECCC
Confidence 99985555678899999999999999985444 3 6789999999999999965533 2233 678999999999
Q ss_pred CCCCCcch-HhhcCCCCcEEeCCCCCC
Q 048333 388 CNLTKFPN-FLENQNHLVILNLSDNRI 413 (413)
Q Consensus 388 ~~l~~l~~-~~~~l~~L~~L~l~~n~i 413 (413)
|.++.++. .+..+++|+.|++++|++
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99997774 568899999999999974
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-32 Score=265.27 Aligned_cols=341 Identities=21% Similarity=0.229 Sum_probs=214.3
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcchhhh-hhcCCCCcEEEc
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSFENL-FEKLSNLKTLNL 118 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~-~~~~~~L~~L~l 118 (413)
+++++|++++|.+.+..+. .+..+++|++|++++|.+... .+. .+.+|+.|++..+.+... -..+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCccccccCCEEEC
Confidence 4677777777777654444 677777777777777766653 232 234555556665444321 015667777777
Q ss_pred CCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCc--cEEECCCCcc--ccccc-ccccc
Q 048333 119 GDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL--LHLDLSLNEL--QGEAA-SFRCF 192 (413)
Q Consensus 119 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~i--~~~~~-~~~~~ 192 (413)
++|.+.+ .+|..+.++++|++|++++|.+.. ..+..+++| +.|++++|.+ +...+ .+...
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--------------LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--------------TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc--------------CchhhhhhceeeEEEeecccccccccCccccccc
Confidence 7777654 234566777777777777766552 122233333 7777777766 33222 11000
Q ss_pred c---------------ccc-ccccCCC-----------------------------------------------------
Q 048333 193 G---------------ELP-ISMGNLG----------------------------------------------------- 203 (413)
Q Consensus 193 ~---------------~~~-~~~~~l~----------------------------------------------------- 203 (413)
. .++ ..+..++
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 0 000 0111222
Q ss_pred --CccEEeCCCCcCCCcchhhh-----hCC--------------------------CCCCEEEccCCcCcccCCcccCCC
Q 048333 204 --SLKELDLSQNGFFGELPTSI-----RNL--------------------------FSLEKLDLSFNKLSGEFPWSTGNF 250 (413)
Q Consensus 204 --~L~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~l~~~ 250 (413)
+|++|++++|.+...+|..+ ..+ .+|+.|++++|.+.... ....+
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 33334444443332222221 111 22444444444332110 01567
Q ss_pred CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCC--cccccccCCCCCcEEEccCCccccccc-ccccCCCCCCE
Q 048333 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEVIYIAKCNFSGQIT-SSLRNLTQLVV 327 (413)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~ 327 (413)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+++.++ ..+..+++|+.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 889999999998877778888889999999999998875 234567788999999999999886344 45778899999
Q ss_pred EECCCCcCcceechhHhhhcc-cCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchH-hhcCCCCcE
Q 048333 328 LDMAQNSYGGTVELDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF-LENQNHLVI 405 (413)
Q Consensus 328 L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~ 405 (413)
|++++|.+.+..+ ..+ ++|++|++++|.++.++...+ .+++|++|++++|+++.+|.. +..+++|+.
T Consensus 433 L~l~~n~l~~~~~-----~~l~~~L~~L~L~~N~l~~ip~~~~------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 433 LNLSSNMLTGSVF-----RCLPPKVKVLDLHNNRIMSIPKDVT------HLQALQELNVASNQLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp EECCSSCCCGGGG-----SSCCTTCSEEECCSSCCCCCCTTTT------SSCCCSEEECCSSCCCCCCTTSTTTCTTCCC
T ss_pred EECCCCCCCcchh-----hhhcCcCCEEECCCCcCcccChhhc------CCCCCCEEECCCCCCCCCCHHHHhcCCCCCE
Confidence 9999998875333 234 689999999998765443322 567899999999999999877 889999999
Q ss_pred EeCCCCCC
Q 048333 406 LNLSDNRI 413 (413)
Q Consensus 406 L~l~~n~i 413 (413)
|++++|++
T Consensus 502 L~l~~N~~ 509 (562)
T 3a79_B 502 IWLHDNPW 509 (562)
T ss_dssp EECCSCCB
T ss_pred EEecCCCc
Confidence 99999975
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-30 Score=250.59 Aligned_cols=332 Identities=20% Similarity=0.249 Sum_probs=233.3
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh--hhcCCCCcEEEcCC
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGD 120 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~L~~L~l~~ 120 (413)
++++.|++.++.+.. ++ .+..+++|++|++++|.+........+.+|+.|.+.++.+... +..+++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCC
Confidence 467788888776653 22 4677888888888888776532123345566666665544322 67788888888888
Q ss_pred ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhh------ccc--CCCccccCCCCccEEECCCCcccccccccccc
Q 048333 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ------ISG--RIPSSLGNLSKLLHLDLSLNELQGEAASFRCF 192 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------~~~--~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 192 (413)
|.+.+.. . +..+++|++|++++|.+..++...... +.. .....+.++++|+.|++++|.+.+.
T Consensus 122 n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------- 192 (466)
T 1o6v_A 122 NQITDID-P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI------- 192 (466)
T ss_dssp SCCCCCG-G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-------
T ss_pred CCCCCCh-H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-------
Confidence 8876543 2 777888888888888776543211000 000 0012266778888888888877643
Q ss_pred ccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhc
Q 048333 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG 272 (413)
Q Consensus 193 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 272 (413)
..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +.
T Consensus 193 ----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 193 ----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp ----GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred ----hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 236677888888888888764433 66788888888888877632 346677888888888888754433 77
Q ss_pred cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333 273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352 (413)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 352 (413)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~ 334 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLTKLQ 334 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCTTCC
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----hccCccCC
Confidence 88888888888888875332 7778889999998888875433 6778889999999988875443 56788899
Q ss_pred eeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 353 ALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 353 ~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
+|++++|.++.++ ....+++|++|++++|.++.++. +..+++|+.|++++|++
T Consensus 335 ~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 335 RLFFYNNKVSDVS-------SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EEECCSSCCCCCG-------GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred EeECCCCccCCch-------hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 9999998866542 11267889999999999986554 78899999999998863
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-31 Score=262.12 Aligned_cols=347 Identities=22% Similarity=0.236 Sum_probs=223.8
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch----hhhhhcCCCC
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF----ENLFEKLSNL 113 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i----~~~~~~~~~L 113 (413)
..+++++|++++|.+.+..+. .+..+++|++|++++|.+... .+. .+.+|+.|++..+.+ +..++++++|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 346899999999999876666 899999999999999988764 343 455777778876655 5668899999
Q ss_pred cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc-ccc-
Q 048333 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS-FRC- 191 (413)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~- 191 (413)
++|++++|.+.+..+..+.++++|++|++++|.+.. ..+|..+.++++|++|++++|.+++..+. +..
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS----------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC----------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccc----------eechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 999999999987776789999999999999999873 25688899999999999999998875432 100
Q ss_pred ----------------cccccc----------------------------------------------------------
Q 048333 192 ----------------FGELPI---------------------------------------------------------- 197 (413)
Q Consensus 192 ----------------~~~~~~---------------------------------------------------------- 197 (413)
...++.
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred hccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 000010
Q ss_pred ---------------------------------------------cccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEE
Q 048333 198 ---------------------------------------------SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKL 232 (413)
Q Consensus 198 ---------------------------------------------~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 232 (413)
.+..+++|++|++++|.+ ..+|. + .+++|+.|
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L 333 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSL 333 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEE
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCcccee
Confidence 122223334444444433 22221 1 33333333
Q ss_pred EccCCcCcccCCcccCCCCCCcEEEecCCccccc-------------------------cchhhccCCCCCeEecCCccc
Q 048333 233 DLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK-------------------------VPHSIGNFTRLQFLFLGFNNF 287 (413)
Q Consensus 233 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~~ 287 (413)
++++|...... .+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+
T Consensus 334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEE
T ss_pred eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCcc
Confidence 33333211111 233444555555555544322 223344445555555555555
Q ss_pred CCccc-ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce-echhHhhhcccCCCeeeccCccccccc
Q 048333 288 SGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT-VELDVLLTSWKNLEALDISLNRSSVLT 365 (413)
Q Consensus 288 ~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~ 365 (413)
.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+. .+ . .+..+++|++|++++|.++.
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~~l~~L~~L~Ls~n~l~~-- 487 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-N-VFANTTNLTFLDLSKCQLEQ-- 487 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-S-CCTTCTTCCEEECTTSCCCE--
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH-H-hhccCCCCCEEECCCCcCCc--
Confidence 43333 3455566666666666666655566666667777777777766642 22 2 45667777777777777432
Q ss_pred eeeecccccc-ccccceeeeccCCCCCCc-chHhhcCCCCcEEeCCCCCC
Q 048333 366 KATFDATTDT-TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 366 ~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i 413 (413)
..+..+ .+++|++|++++|+++.+ |..+.++++|+.|++++|+|
T Consensus 488 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 488 ----ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ----ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ----cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 222323 677888888888888855 77788888888888888875
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-31 Score=261.53 Aligned_cols=328 Identities=18% Similarity=0.223 Sum_probs=223.9
Q ss_pred eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCcc---ccCcCccccCCcch----hhhhhcCCCCcEEE
Q 048333 45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPE---IINLSRLELQKPSF----ENLFEKLSNLKTLN 117 (413)
Q Consensus 45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i----~~~~~~~~~L~~L~ 117 (413)
.++++++++.+.. +|. .+. ++|++|++++|.+... .+.. +.+|+.|++.++.+ ++.+..+++|++|+
T Consensus 33 ~~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3889999998875 444 343 8999999999998864 3333 44566667776555 34477788888888
Q ss_pred cCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccc
Q 048333 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPI 197 (413)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~ 197 (413)
+++|.+. .+|.. .+++|++|++++|.+..+ ..|..+.++++|++|++++|.++..
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l----------~~p~~~~~l~~L~~L~L~~n~l~~~------------ 161 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL----------PVCKEFGNLTKLTFLGLSAAKFRQL------------ 161 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBC----------CCCGGGGGCTTCCEEEEECSBCCTT------------
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCcccc----------CchHhhcccCcccEEecCCCccccC------------
Confidence 8888886 45554 688888888888887632 2356778888888888888877642
Q ss_pred cccCCCCc--cEEeCCCCcC--CCcchhhhhCC--------------------------C--------------------
Q 048333 198 SMGNLGSL--KELDLSQNGF--FGELPTSIRNL--------------------------F-------------------- 227 (413)
Q Consensus 198 ~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~~--------------------------~-------------------- 227 (413)
.+..+++| +.|++++|.+ ....+..+..+ +
T Consensus 162 ~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 23333444 8888888776 33333322221 1
Q ss_pred -----------------------------------CCCEEEccCCcCcccCCccc-----CCCC----------------
Q 048333 228 -----------------------------------SLEKLDLSFNKLSGEFPWST-----GNFS---------------- 251 (413)
Q Consensus 228 -----------------------------------~L~~L~l~~~~~~~~~~~~l-----~~~~---------------- 251 (413)
+|++|++++|.+.+.+|..+ ..+.
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh
Confidence 34444444444443334333 1111
Q ss_pred ----------CCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccc--cccccc
Q 048333 252 ----------SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG--QITSSL 319 (413)
Q Consensus 252 ----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~~~~~ 319 (413)
+|+.|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..+..+
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 2333333333331110 01567788888888888887677778888889999998888875 334567
Q ss_pred cCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhc
Q 048333 320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLEN 399 (413)
Q Consensus 320 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~ 399 (413)
..+++|+.|++++|.+.+..+.. .+..+++|++|++++|.++ ...+..+. ++|++|++++|+++.+|..+.+
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~-~~~~l~~L~~L~l~~n~l~------~~~~~~l~-~~L~~L~L~~N~l~~ip~~~~~ 471 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDR-TCAWAESILVLNLSSNMLT------GSVFRCLP-PKVKVLDLHNNRIMSIPKDVTH 471 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSC-CCCCCTTCCEEECCSSCCC------GGGGSSCC-TTCSEEECCSSCCCCCCTTTTS
T ss_pred cCCCCCCEEECCCCcCCCccChh-hhcCcccCCEEECCCCCCC------cchhhhhc-CcCCEEECCCCcCcccChhhcC
Confidence 78888999999888887645522 5677888899999988853 23333212 6899999999999999988889
Q ss_pred CCCCcEEeCCCCCC
Q 048333 400 QNHLVILNLSDNRI 413 (413)
Q Consensus 400 l~~L~~L~l~~n~i 413 (413)
+++|+.|++++|+|
T Consensus 472 l~~L~~L~L~~N~l 485 (562)
T 3a79_B 472 LQALQELNVASNQL 485 (562)
T ss_dssp SCCCSEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 99999999999986
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.1e-31 Score=275.94 Aligned_cols=370 Identities=18% Similarity=0.150 Sum_probs=226.2
Q ss_pred CCCCceEEEecCCCcccccc-CCccccccccccceeeccccCCCCCCCCcc---ccCcCccccCCcchhh------hhhc
Q 048333 40 KNTGHVIKLNLSHGCLFGSI-NSSSSLFKLVHLKWLNLALNDFNSSEIPPE---IINLSRLELQKPSFEN------LFEK 109 (413)
Q Consensus 40 ~~~~~l~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i~~------~~~~ 109 (413)
....++++|++++|.....+ +. .+..+++|++|++++|.+... .+.. +.+|+.|++..+.+.+ .++.
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cccccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 35678999999998655444 44 789999999999999988764 3443 4566667777665542 2778
Q ss_pred CCCCcEEEcCCccCCCCcC-ccccCCCCCcEEEccCCcccccchhhhh---------------hcccCCCccccCCCC--
Q 048333 110 LSNLKTLNLGDVSIDSTIP-HNIKNLSSLTFVSLRNCELQAMCSFFLI---------------QISGRIPSSLGNLSK-- 171 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~---------------~~~~~~~~~l~~~~~-- 171 (413)
+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.......+. .+.+..+..+..+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 9999999999999876544 5788999999999999887653211110 122333344444443
Q ss_pred ----ccEEECCCCcccccccccccc---------------------------ccccccccC--CCCccEEeCCCCcCCCc
Q 048333 172 ----LLHLDLSLNELQGEAASFRCF---------------------------GELPISMGN--LGSLKELDLSQNGFFGE 218 (413)
Q Consensus 172 ----L~~L~l~~~~i~~~~~~~~~~---------------------------~~~~~~~~~--l~~L~~L~l~~~~~~~~ 218 (413)
|+.|++++|.++...+..... ...+..+.. .++|+.|++++|.+...
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 888888888665432210000 000111222 25677788877777655
Q ss_pred chhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCC
Q 048333 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL 298 (413)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 298 (413)
.+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 66667777778888887777776666677777778888887777766666677777777888887777765555566677
Q ss_pred CCCcEEEccCCccccccc---------------ccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccc
Q 048333 299 RSLEVIYIAKCNFSGQIT---------------SSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSV 363 (413)
Q Consensus 299 ~~L~~L~L~~~~~~~~~~---------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 363 (413)
++|+.|++++|.+++... ..-.....++.|++++|.+.+... ...+..+++|++|++++|.++.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~-~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT-HHHHTTCTTCCEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch-hhhhhcCCccceeeCCCCcccc
Confidence 777777777776652110 000001222333333333322111 1123344455555555544432
Q ss_pred ccee------------------------eecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333 364 LTKA------------------------TFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 364 l~~~------------------------~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i 413 (413)
++.. ....+..+ .+++|++|++++|.++.+| ..+.++++|+.|++++|+|
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 2110 00011112 4677888888888777554 4467788888888888765
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.6e-30 Score=255.39 Aligned_cols=352 Identities=23% Similarity=0.233 Sum_probs=252.1
Q ss_pred CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCC---ccccCcCccccCCcchh----hhhhcCCCCc
Q 048333 42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSFE----NLFEKLSNLK 114 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i~----~~~~~~~~L~ 114 (413)
+..+++|+|++|.++...+. .|..+++|++|++++|++... .+ ..+.+|+.|++.++.+. .+|.++++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 35799999999999876656 899999999999999988764 22 34567777888876653 4588999999
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc-cccc--
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA-SFRC-- 191 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~-- 191 (413)
+|++++|.+.+..+..|+++++|++|++++|.+..+ ..|..+..+++|++|++++|.++...+ .+..
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccC----------CCchhhccchhhhhhcccCccccccccccccchh
Confidence 999999999876667799999999999999998742 456677888889999988887765322 1100
Q ss_pred ---------------cc---------------------------------------------------------------
Q 048333 192 ---------------FG--------------------------------------------------------------- 193 (413)
Q Consensus 192 ---------------~~--------------------------------------------------------------- 193 (413)
..
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 00
Q ss_pred -------------------cc----------------------cccccCCCCccEEeCCCCcCCCcch------------
Q 048333 194 -------------------EL----------------------PISMGNLGSLKELDLSQNGFFGELP------------ 220 (413)
Q Consensus 194 -------------------~~----------------------~~~~~~l~~L~~L~l~~~~~~~~~~------------ 220 (413)
.. ...+.....++.|++.++.+....+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 00 0001112234444444443221100
Q ss_pred -------hhhhCCCCCCEEEccCCcCcc--c-----------------------CCcccCCCCCCcEEEecCCcccccc-
Q 048333 221 -------TSIRNLFSLEKLDLSFNKLSG--E-----------------------FPWSTGNFSSLKLLNLRSCGFWSKV- 267 (413)
Q Consensus 221 -------~~l~~~~~L~~L~l~~~~~~~--~-----------------------~~~~l~~~~~L~~L~l~~~~~~~~~- 267 (413)
.....+++|+.++++.|.+.. . .+..+..+++|+.+++.++......
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 011235677777777765531 1 1223444566666666666543322
Q ss_pred chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc-ccccccccCCCCCCEEECCCCcCcceechhHhhh
Q 048333 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS-GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 346 (413)
...+..+++++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|.+.+..+ . .+.
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~-~f~ 515 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-T-AFN 515 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-T-TTT
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-H-HHc
Confidence 244677788888999888887666777788999999999999765 3467788999999999999999986655 3 688
Q ss_pred cccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCc-chHhhcC-CCCcEEeCCCCCC
Q 048333 347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF-PNFLENQ-NHLVILNLSDNRI 413 (413)
Q Consensus 347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l-~~L~~L~l~~n~i 413 (413)
++++|++|++++|.++.+++..+. .+++|++|++++|+++.+ |..+..+ ++|+.|++++|++
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYK-----CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGT-----TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCCCcCCCCChhHHh-----CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999999999997765443222 578999999999999954 5678887 6899999999985
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.1e-31 Score=254.53 Aligned_cols=316 Identities=20% Similarity=0.219 Sum_probs=246.3
Q ss_pred cccceeeccccCCCCCCCCc---cccCcCccccCCcch-----hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEE
Q 048333 69 VHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF-----ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFV 140 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 140 (413)
++|++|++++|.+... .+. .+.+|+.|++..+.+ +..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 7899999999988764 343 355666677776544 3458889999999999999887778888899999999
Q ss_pred EccCCcccccchhhhhhcccCCC--ccccCCCCccEEECCCCcccccccccccccccccc-ccCCCCccEEeCCCCcCCC
Q 048333 141 SLRNCELQAMCSFFLIQISGRIP--SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS-MGNLGSLKELDLSQNGFFG 217 (413)
Q Consensus 141 ~l~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~ 217 (413)
++++|.++. ..+ ..+..+++|++|++++|.++.. .|.. +..+++|++|++++|.+..
T Consensus 109 ~L~~n~l~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 109 TLTQCNLDG-----------AVLSGNFFKPLTSLEMLVLRDNNIKKI---------QPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp ECTTSCCBT-----------HHHHSSTTTTCTTCCEEECCSSBCCSC---------CCCGGGGGCTTCCEEECTTCCBSC
T ss_pred eCCCCCCCc-----------cccCcccccCcccCCEEECCCCccCcc---------CcccccCCCCcccEEeCCCCcccc
Confidence 999998763 222 3377889999999999988754 2333 7788999999999998877
Q ss_pred cchhhhhCC--CCCCEEEccCCcCcccCCcc--------cCCCCCCcEEEecCCccccccchhhccC---CCCCeEecCC
Q 048333 218 ELPTSIRNL--FSLEKLDLSFNKLSGEFPWS--------TGNFSSLKLLNLRSCGFWSKVPHSIGNF---TRLQFLFLGF 284 (413)
Q Consensus 218 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~ 284 (413)
..+..+..+ .+|+.++++++.+....+.. +..+++|++|++++|.+.+..+..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 777766665 67889999988876443332 2356789999999998877666666544 7899999988
Q ss_pred cccCCcc----------ccccc--CCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333 285 NNFSGDL----------LGSIG--NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352 (413)
Q Consensus 285 ~~~~~~~----------~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 352 (413)
|...... ...+. ..++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+ . .+..+++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~ 326 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-N-AFWGLTHLL 326 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-T-TTTTCTTCC
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh-h-HhcCcccCC
Confidence 7543211 11111 23689999999999998888899999999999999999986554 3 688999999
Q ss_pred eeeccCccccccceeeecccccc-ccccceeeeccCCCCCCc-chHhhcCCCCcEEeCCCCCC
Q 048333 353 ALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 353 ~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i 413 (413)
+|++++|.++.+. +..+ .+++|++|++++|.++.+ |..+.++++|+.|++++|+|
T Consensus 327 ~L~Ls~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 327 KLNLSQNFLGSID------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp EEECCSSCCCEEC------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCccCCcC------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 9999999965432 2222 678999999999999965 78899999999999999986
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.2e-29 Score=231.19 Aligned_cols=293 Identities=19% Similarity=0.190 Sum_probs=234.3
Q ss_pred ccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccc
Q 048333 70 HLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQA 149 (413)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 149 (413)
+++.++++++.+.. +|.. -.++|++|++++|.+++..+..+.++++|++|++++|.++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~-------------------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~- 89 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKD-------------------LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS- 89 (330)
T ss_dssp ETTEEECTTSCCCS--CCCS-------------------CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCeEEEecCCCccc--cCcc-------------------CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-
Confidence 67778887776653 3321 1468899999999998766668899999999999999887
Q ss_pred cchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCC
Q 048333 150 MCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229 (413)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 229 (413)
+..|..+.++++|++|++++|.++. +|..+. ++|++|++++|.+....+..+..+++|
T Consensus 90 ----------~~~~~~~~~l~~L~~L~Ls~n~l~~----------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 90 ----------KISPGAFAPLVKLERLYLSKNQLKE----------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp ----------CBCTTTTTTCTTCCEEECCSSCCSB----------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred ----------eeCHHHhcCCCCCCEEECCCCcCCc----------cChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence 3457788899999999999999874 333332 689999999999987777788999999
Q ss_pred CEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333 230 EKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307 (413)
Q Consensus 230 ~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (413)
+.|++++|.+.. ..+..+..+++|++|++++|.+. ..+..+. ++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 999999998853 56677888999999999999884 3444333 789999999999987767788899999999999
Q ss_pred CCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeecc
Q 048333 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLR 386 (413)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~ 386 (413)
+|.+++..+..+..+++|++|++++|.+..... .+..+++|++|++++|.++.++...+...... ..+.++.++++
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT---TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCccCCh---hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence 999987777788899999999999999884323 57889999999999999988776655433222 46789999999
Q ss_pred CCCCC---CcchHhhcCCCCcEEeCCCCC
Q 048333 387 SCNLT---KFPNFLENQNHLVILNLSDNR 412 (413)
Q Consensus 387 ~~~l~---~l~~~~~~l~~L~~L~l~~n~ 412 (413)
+|.+. ..|..+..+++|+.+++++|+
T Consensus 302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCcccccccCccccccccceeEEEecccC
Confidence 99987 345788899999999999985
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.1e-29 Score=230.44 Aligned_cols=284 Identities=23% Similarity=0.267 Sum_probs=236.5
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (413)
.+..+++|++|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~--~------------------~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~ 96 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI--Q------------------GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIG 96 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC--T------------------TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred cchhcccccEEEEeCCccccc--h------------------hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEcc
Confidence 566889999999999877642 2 266799999999999999754 44 8899999999999
Q ss_pred CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333 144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223 (413)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 223 (413)
+|.+.. + ..+.++++|++|++++|.+.+. +. +..+++|+.|++++|.....++ .+
T Consensus 97 ~n~i~~------------~-~~~~~l~~L~~L~l~~n~i~~~----------~~-~~~l~~L~~L~l~~n~~~~~~~-~~ 151 (347)
T 4fmz_A 97 TNKITD------------I-SALQNLTNLRELYLNEDNISDI----------SP-LANLTKMYSLNLGANHNLSDLS-PL 151 (347)
T ss_dssp SSCCCC------------C-GGGTTCTTCSEEECTTSCCCCC----------GG-GTTCTTCCEEECTTCTTCCCCG-GG
T ss_pred CCcccC------------c-hHHcCCCcCCEEECcCCcccCc----------hh-hccCCceeEEECCCCCCccccc-ch
Confidence 998873 2 3588999999999999998853 32 7889999999999997654444 48
Q ss_pred hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303 (413)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 303 (413)
..+++|++|++++|.+....+ +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|+.
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 225 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence 899999999999998874333 77899999999999988543 33 8889999999999999885433 788999999
Q ss_pred EEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceee
Q 048333 304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR 383 (413)
Q Consensus 304 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L 383 (413)
|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|++++|.++.++. ...+++|++|
T Consensus 226 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L 292 (347)
T 4fmz_A 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N---AVKDLTKLKMLNVGSNQISDISV-------LNNLSQLNSL 292 (347)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G---GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCSEE
T ss_pred EEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h---hHhcCCCcCEEEccCCccCCChh-------hcCCCCCCEE
Confidence 9999999985443 78999999999999998753 3 57899999999999999776521 1267899999
Q ss_pred eccCCCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333 384 GLRSCNLT-KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 384 ~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i 413 (413)
++++|.++ ..|..+.++++|+.|++++|++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99999999 5567899999999999999986
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-29 Score=237.16 Aligned_cols=289 Identities=20% Similarity=0.187 Sum_probs=241.2
Q ss_pred cccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccC
Q 048333 65 LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN 144 (413)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 144 (413)
-..+++++.|+++++.+.. +| +..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~--l~----------------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRK--LP----------------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102 (390)
T ss_dssp SGGGCCCSEEEEESCEESE--EC----------------THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccCCceEEEecCCchhh--CC----------------hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence 3467899999999987654 22 23478899999999999999877777899999999999999
Q ss_pred CcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccc-ccCCCCccEEeCCCCcCCCcchhhh
Q 048333 145 CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS-MGNLGSLKELDLSQNGFFGELPTSI 223 (413)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l 223 (413)
|.+. +..+..+.++++|++|++++|.++. +|.. +..+++|++|++++|.+....+..+
T Consensus 103 n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~----------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 161 (390)
T 3o6n_A 103 NAIR-----------YLPPHVFQNVPLLTVLVLERNDLSS----------LPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161 (390)
T ss_dssp SCCC-----------CCCTTTTTTCTTCCEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCC-----------cCCHHHhcCCCCCCEEECCCCccCc----------CCHHHhcCCCCCcEEECCCCccCccChhhc
Confidence 9987 3456678999999999999999884 3433 5889999999999999987777789
Q ss_pred hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303 (413)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 303 (413)
..+++|++|++++|.+... .+..+++|+.+++++|.+.. +...++|+.|++++|.+... +. ...++|+.
T Consensus 162 ~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~ 230 (390)
T 3o6n_A 162 QATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTI 230 (390)
T ss_dssp SSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCE
T ss_pred cCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccE
Confidence 9999999999999988743 25667899999999997743 33456899999999998743 22 23589999
Q ss_pred EEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceee
Q 048333 304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR 383 (413)
Q Consensus 304 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L 383 (413)
|++++|.+++. ..+..+++|++|++++|.+.+..+ . .+..+++|++|++++|.++.++... ..+++|++|
T Consensus 231 L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L 300 (390)
T 3o6n_A 231 LKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-H-PFVKMQRLERLYISNNRLVALNLYG------QPIPTLKVL 300 (390)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES-G-GGTTCSSCCEEECCSSCCCEEECSS------SCCTTCCEE
T ss_pred EECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh-h-HccccccCCEEECCCCcCcccCccc------CCCCCCCEE
Confidence 99999999753 577889999999999999987655 3 6889999999999999976643222 257899999
Q ss_pred eccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 384 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
++++|.++.+|..+..+++|+.|++++|+|
T Consensus 301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ECCCCcceecCccccccCcCCEEECCCCcc
Confidence 999999999999999999999999999986
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.5e-29 Score=229.26 Aligned_cols=293 Identities=18% Similarity=0.176 Sum_probs=233.3
Q ss_pred cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333 69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 148 (413)
.+++.++++++.+.. +|.. + .++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 33 c~l~~l~~~~~~l~~--ip~~-----------------~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 91 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA--VPKE-----------------I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91 (332)
T ss_dssp EETTEEECCSSCCSS--CCSC-----------------C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCCEEECCCCCccc--cCCC-----------------C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC
Confidence 367888888887653 4422 1 478999999999998766778999999999999999887
Q ss_pred ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333 149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS 228 (413)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 228 (413)
+..|..+.++++|++|++++|.++. +|..+. ++|++|++++|.+....+..+..+++
T Consensus 92 -----------~~~~~~~~~l~~L~~L~L~~n~l~~----------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 92 -----------KIHEKAFSPLRKLQKLYISKNHLVE----------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN 148 (332)
T ss_dssp -----------EECGGGSTTCTTCCEEECCSSCCCS----------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred -----------ccCHhHhhCcCCCCEEECCCCcCCc----------cCcccc--ccCCEEECCCCccCccCHhHhCCCcc
Confidence 3456778899999999999999874 343333 78999999999998666667899999
Q ss_pred CCEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333 229 LEKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306 (413)
Q Consensus 229 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 306 (413)
|+.|++++|.+.. ..+..+..+ +|+.|++++|.+.+ +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 9999999998853 456667666 89999999998844 454433 78999999999998777778899999999999
Q ss_pred cCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeec
Q 048333 307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGL 385 (413)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l 385 (413)
++|.+++..+..+..+++|+.|++++|.+.. ++ . .+..+++|++|++++|.++.++...+...... ..++|+.|++
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp-~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VP-A-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CC-T-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCee-cC-h-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 9999987777788999999999999999983 43 2 57889999999999999887765443322111 3678999999
Q ss_pred cCCCCC---CcchHhhcCCCCcEEeCCCCC
Q 048333 386 RSCNLT---KFPNFLENQNHLVILNLSDNR 412 (413)
Q Consensus 386 ~~~~l~---~l~~~~~~l~~L~~L~l~~n~ 412 (413)
++|.+. ..|..+..+++|+.+++++|.
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 999987 456778899999999999985
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.7e-28 Score=232.99 Aligned_cols=301 Identities=20% Similarity=0.237 Sum_probs=162.9
Q ss_pred CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCC
Q 048333 41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120 (413)
Q Consensus 41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~ 120 (413)
..+++++|+++++.+.+. + .+..+++|++|++++|.+.+.. ++.+++|++|++++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~--~l~~l~~L~~L~Ls~n~l~~~~---------------------~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--T--GIEKLTGLTKLICTSNNITTLD---------------------LSQNTNLTYLACDS 94 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--T--TGGGCTTCSEEECCSSCCSCCC---------------------CTTCTTCSEEECCS
T ss_pred HcCCCCEEEccCCCcccC--h--hhcccCCCCEEEccCCcCCeEc---------------------cccCCCCCEEECcC
Confidence 357899999999988753 2 6889999999999999887642 33455566666666
Q ss_pred ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccccc
Q 048333 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG 200 (413)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 200 (413)
|.+.+. + +..+++|++|++++|.++. ++ +..+++|++|++++|.+++. .+.
T Consensus 95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~------------l~--~~~l~~L~~L~l~~N~l~~l------------~l~ 145 (457)
T 3bz5_A 95 NKLTNL-D--VTPLTKLTYLNCDTNKLTK------------LD--VSQNPLLTYLNCARNTLTEI------------DVS 145 (457)
T ss_dssp SCCSCC-C--CTTCTTCCEEECCSSCCSC------------CC--CTTCTTCCEEECTTSCCSCC------------CCT
T ss_pred CCCcee-e--cCCCCcCCEEECCCCcCCe------------ec--CCCCCcCCEEECCCCcccee------------ccc
Confidence 555532 2 5555666666666655541 22 45555666666666555531 144
Q ss_pred CCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeE
Q 048333 201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280 (413)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 280 (413)
.+++|++|++++|.....+ .+..+++|+.|++++|.++. ++ +..+++|+.|++++|.+.+. .+..+++|+.|
T Consensus 146 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L 217 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL 217 (457)
T ss_dssp TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence 5555666666555332222 24455556666666555543 22 44555566666655555332 24555556666
Q ss_pred ecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCC-------CCCEEECCCCcCcceechhHhhhcccCCCe
Q 048333 281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT-------QLVVLDMAQNSYGGTVELDVLLTSWKNLEA 353 (413)
Q Consensus 281 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 353 (413)
++++|.+.+ .+ +..+++|+.|++++|.+++..+..+..+. +|+.|++++|...+..+ ...+++|+.
T Consensus 218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~ 290 (457)
T 3bz5_A 218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKE 290 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCC
T ss_pred ECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCE
Confidence 666665553 22 44555566666666555543222222211 23334444444333333 234566666
Q ss_pred eeccCcccc-ccceeeeccccc--c-ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 354 LDISLNRSS-VLTKATFDATTD--T-TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 354 L~l~~~~i~-~l~~~~~~~~~~--~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
|++++|... .++. ....... + .+++|++|++++|+++.++ +.++++|+.|++++|+|
T Consensus 291 L~Ls~n~~l~~l~~-~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 291 LDVTHNTQLYLLDC-QAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCTTCTTCCEEEC-TTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCcccceecc-CCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence 666666521 1110 0000000 1 4456667777777766653 56667777777776654
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.9e-28 Score=234.28 Aligned_cols=310 Identities=23% Similarity=0.294 Sum_probs=243.4
Q ss_pred cccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh--hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEc
Q 048333 65 LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSL 142 (413)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 142 (413)
...+++++.|+++++.+....-...+.+|+.|++.++.+... +..+++|++|++++|.+.+..+ +.++++|++|++
T Consensus 42 ~~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 42 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HHHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred hhHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 346889999999999877532224567888888886665432 7889999999999999986544 889999999999
Q ss_pred cCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc------------ccccccccccCCCCccEEeC
Q 048333 143 RNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR------------CFGELPISMGNLGSLKELDL 210 (413)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~------------~~~~~~~~~~~l~~L~~L~l 210 (413)
++|.+.. ++. +.++++|++|++++|.+.+... +. ..... ..+..+++|+.|++
T Consensus 120 ~~n~l~~------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 120 FNNQITD------------IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDI 184 (466)
T ss_dssp CSSCCCC------------CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEEC
T ss_pred CCCCCCC------------ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCc-hhhccCCCCCEEEC
Confidence 9999873 222 7888999999999988776422 10 00011 23677889999999
Q ss_pred CCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCc
Q 048333 211 SQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 290 (413)
++|.+.. + ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+ . ..+..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc
Confidence 9998764 3 347888999999999998875444 6678899999999998744 3 3578889999999999998754
Q ss_pred ccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeec
Q 048333 291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFD 370 (413)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~ 370 (413)
.+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.+.+
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---- 326 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP---- 326 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG----
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh----
Confidence 33 7889999999999999885443 7789999999999999875433 6789999999999999765543
Q ss_pred cccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 371 ATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 371 ~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
...+++|++|++++|.++.++ .+..+++|+.|++++|++
T Consensus 327 ---~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ---GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ---hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCcc
Confidence 126789999999999999874 688999999999999985
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-28 Score=244.23 Aligned_cols=289 Identities=20% Similarity=0.170 Sum_probs=240.3
Q ss_pred ccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCC
Q 048333 66 FKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNC 145 (413)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 145 (413)
..+.+++.++++++.+.. +| +..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 48 l~l~~l~~l~l~~~~l~~--lp----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRK--LP----------------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109 (597)
T ss_dssp GGGCCCSEEEESSCEESE--EC----------------THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCCCceEEEeeCCCCCC--cC----------------HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC
Confidence 356788888888876653 22 235788999999999999998777778999999999999999
Q ss_pred cccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhC
Q 048333 146 ELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN 225 (413)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 225 (413)
.+. +..+..++++++|++|++++|.++.. .+..+..+++|+.|++++|.+....+..+..
T Consensus 110 ~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 110 AIR-----------YLPPHVFQNVPLLTVLVLERNDLSSL---------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp CCC-----------CCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred cCC-----------CCCHHHHcCCCCCCEEEeeCCCCCCC---------CHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 987 44556789999999999999999853 2234688999999999999998777888999
Q ss_pred CCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEE
Q 048333 226 LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY 305 (413)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 305 (413)
+++|+.|++++|.+... + +..+++|+.|++++|.+.+ +...++|+.|++++|.+... +.. ..++|+.|+
T Consensus 170 l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~ 238 (597)
T 3oja_B 170 TTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILK 238 (597)
T ss_dssp CTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEE
T ss_pred CCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-ccc--cCCCCCEEE
Confidence 99999999999988743 2 5567899999999997743 34557899999999998743 222 247899999
Q ss_pred ccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeec
Q 048333 306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGL 385 (413)
Q Consensus 306 L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l 385 (413)
+++|.+++ +..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.++.++... ..+++|++|++
T Consensus 239 L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~------~~l~~L~~L~L 308 (597)
T 3oja_B 239 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY-H-PFVKMQRLERLYISNNRLVALNLYG------QPIPTLKVLDL 308 (597)
T ss_dssp CCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES-G-GGTTCSSCCEEECTTSCCCEEECSS------SCCTTCCEEEC
T ss_pred CCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH-H-HhcCccCCCEEECCCCCCCCCCccc------ccCCCCcEEEC
Confidence 99999985 3678899999999999999987665 4 6889999999999999976543222 15789999999
Q ss_pred cCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 386 RSCNLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 386 ~~~~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
++|.++.+|..+..+++|+.|++++|+|
T Consensus 309 s~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 309 SHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCCCCccCcccccCCCCCEEECCCCCC
Confidence 9999999999999999999999999986
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.7e-28 Score=222.34 Aligned_cols=289 Identities=17% Similarity=0.156 Sum_probs=220.2
Q ss_pred eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333 45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID 124 (413)
Q Consensus 45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~ 124 (413)
++.++++++.+.. ++. .+ .++|++|++++|.+... + +..+..+++|++|++++|.+.
T Consensus 33 l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~~--~----------------~~~~~~l~~L~~L~L~~n~l~ 89 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITEI--K----------------DGDFKNLKNLHTLILINNKIS 89 (330)
T ss_dssp TTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCCB--C----------------TTTTTTCTTCCEEECCSSCCC
T ss_pred CeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCEe--C----------------hhhhccCCCCCEEECCCCcCC
Confidence 4455666665542 322 22 36899999999987753 1 224677899999999999998
Q ss_pred CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCC
Q 048333 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS 204 (413)
Q Consensus 125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~ 204 (413)
+..|..+..+++|++|++++|.++. +|..+. ++|++|++++|.++.. .+..+..+++
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~------------l~~~~~--~~L~~L~l~~n~l~~~---------~~~~~~~l~~ 146 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKE------------LPEKMP--KTLQELRVHENEITKV---------RKSVFNGLNQ 146 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSB------------CCSSCC--TTCCEEECCSSCCCBB---------CHHHHTTCTT
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCc------------cChhhc--ccccEEECCCCccccc---------CHhHhcCCcc
Confidence 7778889999999999999998863 444443 7899999999988854 3345788999
Q ss_pred ccEEeCCCCcCCC--cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 205 LKELDLSQNGFFG--ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 205 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
|+.|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 9999999998853 45677888999999999999887 3554443 78999999999987777788999999999999
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhh------cccCCCeeec
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT------SWKNLEALDI 356 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~------~~~~L~~L~l 356 (413)
++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+... . .+. ..+.++.|++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~-~-~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS-N-DFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT-T-SSSCSSCCTTSCCCSEEEC
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh-h-hcCCcccccccccccceEe
Confidence 999988766667888999999999999998 777788899999999999999875433 2 232 2477899999
Q ss_pred cCccccccceeeecccccc-ccccceeeeccCCC
Q 048333 357 SLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCN 389 (413)
Q Consensus 357 ~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~ 389 (413)
++|++.... -.+... .+.+++.+++++|+
T Consensus 301 ~~N~~~~~~----i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWE----IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGG----SCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccc----cCccccccccceeEEEecccC
Confidence 999965421 111222 67789999998874
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.3e-29 Score=246.12 Aligned_cols=200 Identities=24% Similarity=0.288 Sum_probs=148.6
Q ss_pred CcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch---
Q 048333 30 CYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF--- 103 (413)
Q Consensus 30 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i--- 103 (413)
.|.|.++ |+. +++.++ .+|. .+ .++|++|++++|.+... .+. .+.+|+.|++.++.+
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 4888887 742 344443 2333 33 27999999999998764 333 455677777776555
Q ss_pred -hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcc
Q 048333 104 -ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL 182 (413)
Q Consensus 104 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 182 (413)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..+ ..+..+.++++|++|++++|.+
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL----------GVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS----------CSSCSCTTCTTCCEEEEEESSS
T ss_pred ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc----------chhhhhhccCCccEEECCCCcc
Confidence 34578889999999999999877777788999999999999988632 3456788899999999999874
Q ss_pred cccccccccccccc-ccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC
Q 048333 183 QGEAASFRCFGELP-ISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC 261 (413)
Q Consensus 183 ~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 261 (413)
... +| ..+..+++|++|++++|.+....|..+..+++|+.|+++++.........+..+++|++|++++|
T Consensus 136 ~~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 136 FSE---------IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp CCE---------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred ccc---------cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 322 33 46788899999999999988778888889999999999988765322222345788999999888
Q ss_pred cccc
Q 048333 262 GFWS 265 (413)
Q Consensus 262 ~~~~ 265 (413)
.+.+
T Consensus 207 ~l~~ 210 (549)
T 2z81_A 207 NLAR 210 (549)
T ss_dssp BCTT
T ss_pred cccc
Confidence 7644
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.5e-29 Score=227.00 Aligned_cols=249 Identities=26% Similarity=0.382 Sum_probs=220.7
Q ss_pred CCCcEEEcCCccCCC--CcCccccCCCCCcEEEccC-CcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333 111 SNLKTLNLGDVSIDS--TIPHNIKNLSSLTFVSLRN-CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA 187 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 187 (413)
.++++|+++++.+.+ .+|..+.++++|++|++++ +.+. +.+|..+.++++|++|++++|.+++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~n~l~~~-- 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----------GPIPPAIAKLTQLHYLYITHTNVSGA-- 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-----------SCCCGGGGGCTTCSEEEEEEECCEEE--
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-----------ccCChhHhcCCCCCEEECcCCeeCCc--
Confidence 689999999999988 7899999999999999995 7776 57888899999999999999998754
Q ss_pred cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEEecCCccccc
Q 048333 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS-SLKLLNLRSCGFWSK 266 (413)
Q Consensus 188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~ 266 (413)
+|..+..+++|++|++++|.+...+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.
T Consensus 117 -------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 117 -------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp -------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred -------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 677889999999999999999878899999999999999999999878888888887 999999999999888
Q ss_pred cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhh
Q 048333 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 346 (413)
.+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+..+ . .+.
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p-~-~l~ 265 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-Q-GLT 265 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-G-GGG
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC-h-HHh
Confidence 888888887 99999999999877888899999999999999999865554 7789999999999999987666 3 688
Q ss_pred cccCCCeeeccCccccccceeeeccccccccccceeeeccCCC
Q 048333 347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN 389 (413)
Q Consensus 347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 389 (413)
.+++|++|++++|. ..+..|....+++|+.+++++|.
T Consensus 266 ~l~~L~~L~Ls~N~------l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNN------LCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSE------EEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCc------ccccCCCCccccccChHHhcCCC
Confidence 99999999999999 45555554578899999999997
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-31 Score=258.01 Aligned_cols=356 Identities=18% Similarity=0.167 Sum_probs=248.6
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCC---CCCc---cccCcCccccCCcchhh-----hhhcCC
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSS---EIPP---EIINLSRLELQKPSFEN-----LFEKLS 111 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~---~~~~L~~L~l~~~~i~~-----~~~~~~ 111 (413)
+++++|+++++.+...... ..+..+++|++|++++|.+... .++. .+.+|+.|++.++.+.+ ....++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 5788999998887643322 1367889999999999987642 1222 24677788888776644 234455
Q ss_pred ----CCcEEEcCCccCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcc-ccCCCCccEEECCCCcc
Q 048333 112 ----NLKTLNLGDVSIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS-LGNLSKLLHLDLSLNEL 182 (413)
Q Consensus 112 ----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~i 182 (413)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+... ..+... ....++|++|++++|.+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL-------QLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH-------HHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH-------HHHHHHHhcCCCcceEEECCCCCC
Confidence 69999999998874 457788889999999999998764211 011111 22356799999999988
Q ss_pred ccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhh-----CCCCCCEEEccCCcCccc----CCcccCCCCCC
Q 048333 183 QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIR-----NLFSLEKLDLSFNKLSGE----FPWSTGNFSSL 253 (413)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L 253 (413)
++.... .++..+..+++|++|++++|.+....+..+. ..++|+.|++++|.++.. ++..+..+++|
T Consensus 155 ~~~~~~-----~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 155 SAASCE-----PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp BGGGHH-----HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CHHHHH-----HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 764321 2455667788999999999887544333332 356899999999987643 45566678899
Q ss_pred cEEEecCCcccccc-----chhhccCCCCCeEecCCcccCCc----ccccccCCCCCcEEEccCCccccccccccc----
Q 048333 254 KLLNLRSCGFWSKV-----PHSIGNFTRLQFLFLGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSGQITSSLR---- 320 (413)
Q Consensus 254 ~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~---- 320 (413)
++|++++|.+.+.. +..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..+..+.
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 99999998875432 22233578899999999988753 345566688999999999988644333222
Q ss_pred -CCCCCCEEECCCCcCcceec--hhHhhhcccCCCeeeccCccccccceeeecccccc--ccccceeeeccCCCCC----
Q 048333 321 -NLTQLVVLDMAQNSYGGTVE--LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGLRSCNLT---- 391 (413)
Q Consensus 321 -~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~---- 391 (413)
..++|++|++++|.+.+... +...+..+++|++|++++|.+++.+... ....+ ..++|++|++++|.++
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~i~~~~~ 387 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--LCQGLGQPGSVLRVLWLADCDVSDSSC 387 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH--HHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH--HHHHHcCCCCceEEEECCCCCCChhhH
Confidence 23689999999998875421 2235677899999999999854432111 11111 2568999999999998
Q ss_pred -CcchHhhcCCCCcEEeCCCCCC
Q 048333 392 -KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 392 -~l~~~~~~l~~L~~L~l~~n~i 413 (413)
.+|..+..+++|+.|++++|+|
T Consensus 388 ~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 388 SSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHHhCCCccEEECCCCCC
Confidence 6788888899999999999875
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-27 Score=218.41 Aligned_cols=288 Identities=18% Similarity=0.173 Sum_probs=205.2
Q ss_pred eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333 45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID 124 (413)
Q Consensus 45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~ 124 (413)
++.++++++.+. .++. .+ .++|++|++++|.+... + +..+..+++|++|++++|.+.
T Consensus 35 l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~--~----------------~~~~~~l~~L~~L~L~~n~l~ 91 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL--R----------------KDDFKGLQHLYALVLVNNKIS 91 (332)
T ss_dssp TTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE--C----------------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc--C----------------HhHhhCCCCCcEEECCCCccC
Confidence 445666666554 2333 33 36888999988877642 1 224667888888999888888
Q ss_pred CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCC
Q 048333 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS 204 (413)
Q Consensus 125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~ 204 (413)
+..|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.++.. .+..+..+++
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~n~l~------------~l~~~~~--~~L~~L~l~~n~i~~~---------~~~~~~~l~~ 148 (332)
T 2ft3_A 92 KIHEKAFSPLRKLQKLYISKNHLV------------EIPPNLP--SSLVELRIHDNRIRKV---------PKGVFSGLRN 148 (332)
T ss_dssp EECGGGSTTCTTCCEEECCSSCCC------------SCCSSCC--TTCCEEECCSSCCCCC---------CSGGGSSCSS
T ss_pred ccCHhHhhCcCCCCEEECCCCcCC------------ccCcccc--ccCCEEECCCCccCcc---------CHhHhCCCcc
Confidence 766778888888999999888876 3444443 7888888888888743 2344778888
Q ss_pred ccEEeCCCCcCCC--cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 205 LKELDLSQNGFFG--ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 205 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
|+.|++++|.+.. ..+..+..+ +|+.|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 8889988888753 445566666 88888888888774 454433 68888888888886666677888888999999
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc------ccCCCeeec
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS------WKNLEALDI 356 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~------~~~L~~L~l 356 (413)
++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+... . .+.. .+.|+.|++
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~-~-~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV-N-DFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT-T-SSSCSSCCSSSCCBSEEEC
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh-h-HccccccccccccccceEe
Confidence 988888766667888889999999988887 677778888899999999888875433 2 2322 466888999
Q ss_pred cCccccccceeeecccccc-ccccceeeeccCCC
Q 048333 357 SLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCN 389 (413)
Q Consensus 357 ~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~ 389 (413)
++|++...+ ..+... .+++|+.+++++|+
T Consensus 302 ~~N~~~~~~----~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWE----VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGG----SCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccc----cCcccccccchhhhhhccccc
Confidence 988854211 111112 57788888888764
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.5e-28 Score=224.90 Aligned_cols=250 Identities=24% Similarity=0.332 Sum_probs=150.6
Q ss_pred cCCCCCCCCC-CCCCCCCCcccceEEee--------CCCCceEEEecCCCccccccCCccccccccccceeeccccCCCC
Q 048333 13 DCRPTMASWK-PEEGSVDCYSWDVVHCN--------KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS 83 (413)
Q Consensus 13 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 83 (413)
|+....+.|. +..+..++|.|.|+.|. ...++++.|+++++.+. .++. .+..+++|++|++++|.+..
T Consensus 42 ~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~ 118 (328)
T 4fcg_A 42 DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME 118 (328)
T ss_dssp CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCCC
T ss_pred CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCccc
Confidence 3444456784 00127899999999983 24578899999998886 5555 68889999999999888762
Q ss_pred CCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC
Q 048333 84 SEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163 (413)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 163 (413)
+|. .++.+++|++|++++|.+. .+|..+..+++|++|++++|.+. +.+|
T Consensus 119 --lp~-----------------~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-----------~~~p 167 (328)
T 4fcg_A 119 --LPD-----------------TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-----------TELP 167 (328)
T ss_dssp --CCS-----------------CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-----------CCCC
T ss_pred --hhH-----------------HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-----------cccC
Confidence 442 3566888999999998887 67888888899999999887765 3455
Q ss_pred ccccC---------CCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEc
Q 048333 164 SSLGN---------LSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDL 234 (413)
Q Consensus 164 ~~l~~---------~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (413)
..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp SCSEEEC-CCCEEESTTCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred hhHhhccchhhhccCCCCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 54432 555555555555554 13444555555555555555554 23334455555555555
Q ss_pred cCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333 235 SFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307 (413)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (413)
++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++++.+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 5554444444444444444444444444444444444444444444444444433444444444444444443
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.3e-27 Score=224.43 Aligned_cols=215 Identities=21% Similarity=0.188 Sum_probs=84.6
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCc----------------CccccCCcchhhh
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINL----------------SRLELQKPSFENL 106 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L----------------~~L~l~~~~i~~~ 106 (413)
.++++|+++++.+ +.+|. .++++++|++|++++|.+.+. +|..++++ +.|++.++.+...
T Consensus 11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 4666777777766 45555 667777777777766665543 55544433 2233333333321
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhh--h-------hhcccCCCccccCCCCccEEEC
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF--L-------IQISGRIPSSLGNLSKLLHLDL 177 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~-------~~~~~~~~~~l~~~~~L~~L~l 177 (413)
-...++|++|++++|.+.+ +|.. +++|++|++++|.++.++... . -++ ..+| .+.++++|++|++
T Consensus 87 p~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEEC
T ss_pred CCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCC-CCCc-ccCCCCCCCEEEC
Confidence 1123455555555555543 3322 234444444444433221100 0 001 1244 3666777777777
Q ss_pred CCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEE
Q 048333 178 SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLN 257 (413)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 257 (413)
++|.+++. |.. ..+|++|++++|.+.. +| .+..+++|+.|++++|.+.+ +|.. .++|++|+
T Consensus 161 ~~N~l~~l----------p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 161 DNNSLKKL----------PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CSSCCSCC----------CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCcCccc----------CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 77766642 111 1244555555554432 33 24444555555555444432 2211 12444444
Q ss_pred ecCCccccccchhhccCCCCCeEecCCcccC
Q 048333 258 LRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS 288 (413)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (413)
+++|.+. .+|. +..+++|++|++++|.+.
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 4444442 2332 444444444444444443
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.9e-26 Score=219.93 Aligned_cols=311 Identities=23% Similarity=0.227 Sum_probs=151.0
Q ss_pred eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333 45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID 124 (413)
Q Consensus 45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~ 124 (413)
+++|+++++.+.+ ++. -.++|++|++++|.+.+ ++..+.+|+.|++..+.+...-...++|++|++++|.+.
T Consensus 73 l~~L~l~~~~l~~-lp~-----~~~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPE-----LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSEEECTTSCCSC-CCS-----CCTTCSEEECCSSCCSS--CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS
T ss_pred CCEEEecCCcccc-CCC-----CcCCCCEEEccCCcCCc--cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC
Confidence 4556666655543 111 12456666666665554 444455566666555544432112246666666666665
Q ss_pred CCcCccccCCCCCcEEEccCCcccccchhh---------hhhcccCCCccccCCCCccEEECCCCccccccccccccccc
Q 048333 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFF---------LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGEL 195 (413)
Q Consensus 125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 195 (413)
+ +| .+..+++|++|++++|.++.++... .-.+ ..+| .+.++++|+.|++++|.+++.
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l~~l---------- 210 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLKKL---------- 210 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSSC----------
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcCCcC----------
Confidence 3 44 3566666666666666654221000 0000 0122 244444444444444444321
Q ss_pred cccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCC
Q 048333 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275 (413)
Q Consensus 196 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 275 (413)
|.. .++|++|++++|.+. .+|. +..+++|++|++++|.+.. +|. .+++|+.|++++|.+.+ ++.. ++
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cC
Confidence 111 124555555555444 3332 4455555555555555442 222 12455555555555422 2221 24
Q ss_pred CCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeee
Q 048333 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALD 355 (413)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 355 (413)
+|+.|++++|.+.+ .+. ..++|+.|++++|.+++ ++. ..++|+.|++++|.+.+ ++ . .+++|++|+
T Consensus 278 ~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp-~----~~~~L~~L~ 343 (454)
T 1jl5_A 278 SLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LP-A----LPPRLERLI 343 (454)
T ss_dssp TCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CC-C----CCTTCCEEE
T ss_pred cCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cc-c----cCCcCCEEE
Confidence 55566665555543 110 12456666666666552 111 12477788888877764 33 1 257788888
Q ss_pred ccCccccccceeeeccccccccccceeeeccCCCCCC---cchHhhcC-------------CCCcEEeCCCCCC
Q 048333 356 ISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTK---FPNFLENQ-------------NHLVILNLSDNRI 413 (413)
Q Consensus 356 l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~l-------------~~L~~L~l~~n~i 413 (413)
+++|.++.++. .+++|++|++++|.++. +|..+..+ ++|+.|++++|++
T Consensus 344 L~~N~l~~lp~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 344 ASFNHLAEVPE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCSSCCSCCCC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CCCCccccccc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 88887665443 24678888888888874 56666666 7888888888864
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=6.9e-26 Score=216.27 Aligned_cols=281 Identities=18% Similarity=0.170 Sum_probs=225.4
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (413)
.+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++ +| +..+++|++|+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~--~------------------~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM--T------------------GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACD 93 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC--T------------------TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred ChhHcCCCCEEEccCCCcccC--h------------------hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECc
Confidence 678899999999999988753 2 26679999999999999986 34 8899999999999
Q ss_pred CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333 144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223 (413)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 223 (413)
+|.++. ++ ++++++|++|++++|.+++ ++ +..+++|++|++++|.+.. + .+
T Consensus 94 ~N~l~~------------~~--~~~l~~L~~L~L~~N~l~~----------l~--~~~l~~L~~L~l~~N~l~~-l--~l 144 (457)
T 3bz5_A 94 SNKLTN------------LD--VTPLTKLTYLNCDTNKLTK----------LD--VSQNPLLTYLNCARNTLTE-I--DV 144 (457)
T ss_dssp SSCCSC------------CC--CTTCTTCCEEECCSSCCSC----------CC--CTTCTTCCEEECTTSCCSC-C--CC
T ss_pred CCCCce------------ee--cCCCCcCCEEECCCCcCCe----------ec--CCCCCcCCEEECCCCccce-e--cc
Confidence 999873 33 7889999999999999884 33 7789999999999999975 3 27
Q ss_pred hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303 (413)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 303 (413)
..+++|++|++++|...+.+ .+..+++|+.|++++|.+.+ .+ +..+++|+.|++++|.+.+. .+..+++|+.
T Consensus 145 ~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~ 216 (457)
T 3bz5_A 145 SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF 216 (457)
T ss_dssp TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence 88999999999999654344 47788999999999999855 44 78899999999999999854 4788999999
Q ss_pred EEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccce----eeecccccccccc
Q 048333 304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK----ATFDATTDTTSQK 379 (413)
Q Consensus 304 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~----~~~~~~~~~~~~~ 379 (413)
|++++|++++ +| +..+++|+.|++++|.+.+.. ...+++|+.|+++++.++.++- ..+..+ ...+++
T Consensus 217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~ 287 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRK 287 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTT
T ss_pred EECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCCCCCEEECCCCccCCccc-cccccc
Confidence 9999999986 44 788999999999999998643 3456677777666666655432 122222 126789
Q ss_pred ceeeeccCCCCC-Ccch--------HhhcCCCCcEEeCCCCCC
Q 048333 380 IQYRGLRSCNLT-KFPN--------FLENQNHLVILNLSDNRI 413 (413)
Q Consensus 380 L~~L~l~~~~l~-~l~~--------~~~~l~~L~~L~l~~n~i 413 (413)
|+.|++++|... .+|. .+.++++|+.|++++|+|
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence 999999999743 3332 256788999999999975
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.2e-26 Score=207.02 Aligned_cols=254 Identities=23% Similarity=0.279 Sum_probs=195.3
Q ss_pred cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCC--cCccccCCCCCcEEEccCCc
Q 048333 69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDST--IPHNIKNLSSLTFVSLRNCE 146 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~ 146 (413)
++|++|++++|.+.. ++. ..+..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 28 ~~l~~L~L~~n~l~~--i~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 28 SSATRLELESNKLQS--LPH----------------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TTCCEEECCSSCCCC--CCT----------------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CCCCEEECCCCccCc--cCH----------------hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 678899999887764 332 2356788999999998887632 25566678899999999988
Q ss_pred ccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCC
Q 048333 147 LQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL 226 (413)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 226 (413)
+. .++..+..+++|++|++++|.++... ....+..+++|+.|++++|.+....+..+..+
T Consensus 90 i~------------~l~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 90 VI------------TMSSNFLGLEQLEHLDFQHSNLKQMS--------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EE------------EEEEEEETCTTCCEEECTTSEEESST--------TTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred cc------------cChhhcCCCCCCCEEECCCCcccccc--------cchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 76 34556778889999999998887541 11357788889999999988876677778888
Q ss_pred CCCCEEEccCCcCcc-cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEE
Q 048333 227 FSLEKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY 305 (413)
Q Consensus 227 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 305 (413)
++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 999999999988865 4677788889999999999988776677888889999999999988866666778889999999
Q ss_pred ccCCcccccccccccCCC-CCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 306 IAKCNFSGQITSSLRNLT-QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 306 L~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
+++|.+++..+..+..++ +|++|++++|.+...........-+...+.+.+..+.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~ 285 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence 999999877777777774 8999999999887654433233334445555555554
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.5e-29 Score=241.60 Aligned_cols=357 Identities=20% Similarity=0.171 Sum_probs=252.7
Q ss_pred CCceEEEecCCCcccccc--CCccccccccccceeeccccCCCCCC---CCcccc----CcCccccCCcch--------h
Q 048333 42 TGHVIKLNLSHGCLFGSI--NSSSSLFKLVHLKWLNLALNDFNSSE---IPPEII----NLSRLELQKPSF--------E 104 (413)
Q Consensus 42 ~~~l~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~----~L~~L~l~~~~i--------~ 104 (413)
.+++++|++++|.+.... ..+..+..+++|++|++++|.+.... +...+. +|+.|++.++.+ +
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 468999999999886431 11126777899999999999875421 122333 688888886544 4
Q ss_pred hhhhcCCCCcEEEcCCccCCCCcCcccc-----CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC
Q 048333 105 NLFEKLSNLKTLNLGDVSIDSTIPHNIK-----NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL 179 (413)
Q Consensus 105 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 179 (413)
..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.... ..++..+..+++|++|++++
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-------EPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-------HHHHHHHHHCTTCCEEECCS
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH-------HHHHHHHhhCCCCCEEECcC
Confidence 5578899999999999998653333222 35689999999999874211 12345567789999999999
Q ss_pred Ccccccccccccccccccccc-CCCCccEEeCCCCcCCCc----chhhhhCCCCCCEEEccCCcCcccC-----CcccCC
Q 048333 180 NELQGEAASFRCFGELPISMG-NLGSLKELDLSQNGFFGE----LPTSIRNLFSLEKLDLSFNKLSGEF-----PWSTGN 249 (413)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~ 249 (413)
|.+++.... .+...+. ..++|++|++++|.+... ++..+..+++|++|++++|.+.... +.....
T Consensus 180 n~i~~~~~~-----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 180 NDINEAGVR-----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254 (461)
T ss_dssp SBCHHHHHH-----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred CCcchHHHH-----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence 998764221 1111221 356899999999998753 5677888999999999999876432 223346
Q ss_pred CCCCcEEEecCCccccc----cchhhccCCCCCeEecCCcccCCcccccccC-----CCCCcEEEccCCccccc----cc
Q 048333 250 FSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGN-----LRSLEVIYIAKCNFSGQ----IT 316 (413)
Q Consensus 250 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~L~~~~~~~~----~~ 316 (413)
+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 78999999999988553 5666778999999999999887544433332 37999999999999854 45
Q ss_pred ccccCCCCCCEEECCCCcCcceechh--Hhhh-cccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCC
Q 048333 317 SSLRNLTQLVVLDMAQNSYGGTVELD--VLLT-SWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTK 392 (413)
Q Consensus 317 ~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~~-~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~ 392 (413)
..+..+++|++|++++|.+.+..... ..+. ..++|++|++++|.++..+ ....+..+ .+++|++|++++|.++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh--HHHHHHHHHhCCCccEEECCCCCCCH
Confidence 66777899999999999887543311 1122 2679999999999965311 11233333 67899999999999982
Q ss_pred --c---chHhh-cCCCCcEEeCCCCC
Q 048333 393 --F---PNFLE-NQNHLVILNLSDNR 412 (413)
Q Consensus 393 --l---~~~~~-~l~~L~~L~l~~n~ 412 (413)
+ ...+. ...+|+.|++.++.
T Consensus 413 ~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 413 AGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHHHhccCCcchhheeecccc
Confidence 2 22222 23468888887765
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.8e-26 Score=208.21 Aligned_cols=267 Identities=21% Similarity=0.182 Sum_probs=207.6
Q ss_pred CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
.++|++|++++|.+....+..+.++++|++|++++|.+... +..+..+..+++|++|++++|.+..
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~L~~L~Ls~n~i~~----- 92 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFGTTSLKYLDLSFNGVIT----- 92 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHSCSCCCEEECCSCSEEE-----
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------cCcccccccccccCEEECCCCcccc-----
Confidence 46899999999999865555678999999999999988643 1224556678999999999999873
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc-cc
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS-KV 267 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~ 267 (413)
+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..
T Consensus 93 -----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 93 -----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp -----EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -----ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 56668889999999999999875443 578889999999999999887778888899999999999998865 57
Q ss_pred chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 347 (413)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~~ 245 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-Q-ELQH 245 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-S-SCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-H-HHHh
Confidence 7788999999999999999987667788889999999999999987666678889999999999999986555 3 4566
Q ss_pred cc-CCCeeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhhcC
Q 048333 348 WK-NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQ 400 (413)
Q Consensus 348 ~~-~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l 400 (413)
++ +|++|++++|++....... .... .....+.+.+..+.+. ..|..+.+.
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~-~~~~--~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQ-SFLQ--WIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGH-HHHH--HHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred hhccCCEEEccCCCeecccChH-HHHH--HHHhhhhhhccccccccCCchhhCCc
Confidence 64 8999999999953211100 0011 1223444455555555 556655543
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.1e-25 Score=222.68 Aligned_cols=318 Identities=26% Similarity=0.276 Sum_probs=222.2
Q ss_pred cccceeeccccCCCCCCCC---ccccCcCccccCCcch----hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEE
Q 048333 69 VHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSF----ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVS 141 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 141 (413)
+++++||+++|.++.. .+ ..+.+|+.|++..+.+ +++|.++++|++|++++|++....+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4799999999998764 22 3456777788887665 34588999999999999999876667899999999999
Q ss_pred ccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchh
Q 048333 142 LRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT 221 (413)
Q Consensus 142 l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 221 (413)
+++|.++. ..+..++++++|++|++++|.++.. ..|..+..+++|++|++++|.+....+.
T Consensus 131 Ls~N~l~~-----------l~~~~~~~L~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 131 AVETNLAS-----------LENFPIGHLKTLKELNVAHNLIQSF--------KLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CTTSCCCC-----------STTCCCTTCTTCCEEECCSSCCCCC--------CCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCcCCC-----------CChhhhhcCcccCeeccccCccccC--------CCchhhccchhhhhhcccCccccccccc
Confidence 99999873 3345688999999999999998754 3566777888888888888876533332
Q ss_pred hhhCC---------------------------------------------------------------------------
Q 048333 222 SIRNL--------------------------------------------------------------------------- 226 (413)
Q Consensus 222 ~l~~~--------------------------------------------------------------------------- 226 (413)
.+..+
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 22111
Q ss_pred --------------------------------------------------------CCCCEEEccCCcCcccCC------
Q 048333 227 --------------------------------------------------------FSLEKLDLSFNKLSGEFP------ 244 (413)
Q Consensus 227 --------------------------------------------------------~~L~~L~l~~~~~~~~~~------ 244 (413)
..++.|++.++.+.....
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence 112222222222110000
Q ss_pred -------------cccCCCCCCcEEEecCCcccc--ccchhhcc-----------------------CCCCCeEecCCcc
Q 048333 245 -------------WSTGNFSSLKLLNLRSCGFWS--KVPHSIGN-----------------------FTRLQFLFLGFNN 286 (413)
Q Consensus 245 -------------~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~-----------------------~~~L~~L~l~~~~ 286 (413)
.....+++|+.++++++.+.. ..+..+.. +++|+.+++..+.
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 011124567777777765522 22233333 3445555555444
Q ss_pred cCC-cccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccc
Q 048333 287 FSG-DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLT 365 (413)
Q Consensus 287 ~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~ 365 (413)
... .....+..+++++.++++.|.+....+..+..++.++.|++++|.+....... .+..+++|++|++++|.++.+.
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCccCCcC
Confidence 332 12234556778888888888887777778888999999999999765433313 6788999999999999965543
Q ss_pred eeeecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333 366 KATFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 366 ~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i 413 (413)
+..+ .+++|++|++++|+++.++ ..+.++++|+.|++++|+|
T Consensus 511 ------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 511 ------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ------TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred ------hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 2333 6789999999999999664 6789999999999999986
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.5e-26 Score=203.59 Aligned_cols=268 Identities=19% Similarity=0.179 Sum_probs=155.7
Q ss_pred cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193 (413)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 193 (413)
++++.+++.++ .+|..+ .++|++|+++++.++. ..+..+..+++|++|++++|.+++.
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~-------- 71 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARI-------- 71 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEE--------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCc-----------cCHHHcccCCCCCEEECCCCcccee--------
Confidence 45555555554 233322 3556666666666552 2234455666666666666665533
Q ss_pred cccccccCCCCccEEeCCCCc-CCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhc
Q 048333 194 ELPISMGNLGSLKELDLSQNG-FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG 272 (413)
Q Consensus 194 ~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 272 (413)
.+..+..+++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.
T Consensus 72 -~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 72 -DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150 (285)
T ss_dssp -CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence 23455566666666666665 4433455566666666666666666655555566666677777766666544444566
Q ss_pred cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333 273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352 (413)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 352 (413)
.+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++|+
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~l~~L~ 228 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-E-ALAPLRALQ 228 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-H-HHTTCTTCC
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-H-HcccCcccC
Confidence 66677777777776664444456666777777777777765556666677777777777777664332 2 466677777
Q ss_pred eeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhhc--CCCCcEEeCCCCC
Q 048333 353 ALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLEN--QNHLVILNLSDNR 412 (413)
Q Consensus 353 ~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~--l~~L~~L~l~~n~ 412 (413)
+|++++|++ ..+.........++.+....+.+. ..|..+.+ +..++..++.||+
T Consensus 229 ~L~l~~N~~------~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 229 YLRLNDNPW------VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp EEECCSSCE------ECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred EEeccCCCc------cCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 777777763 222211111223444455555555 55555533 4555556666664
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-25 Score=201.41 Aligned_cols=250 Identities=21% Similarity=0.197 Sum_probs=202.3
Q ss_pred CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCc-ccccccc
Q 048333 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE-LQGEAAS 188 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~ 188 (413)
.++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+.++++|++|++++|. +...
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~~l~~~--- 96 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-----------RIDAAAFTGLALLEQLDLSDNAQLRSV--- 96 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSCTTCCCC---
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-----------eeCHhhcCCccCCCEEeCCCCCCcccc---
Confidence 578999999999998766678899999999999999887 3446778899999999999997 6643
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP 268 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 268 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 97 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 97 ------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred ------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 35678889999999999999987778889999999999999999986666678889999999999999866666
Q ss_pred hhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcc
Q 048333 269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW 348 (413)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 348 (413)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..........
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~--- 247 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--- 247 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH---
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH---
Confidence 67889999999999999998777888999999999999999998766677899999999999999987655433122
Q ss_pred cCCCeeeccCccccccceeeecccccc---ccccceeeeccCC
Q 048333 349 KNLEALDISLNRSSVLTKATFDATTDT---TSQKIQYRGLRSC 388 (413)
Q Consensus 349 ~~L~~L~l~~~~i~~l~~~~~~~~~~~---~~~~L~~L~l~~~ 388 (413)
..++.+....+. .....|..+ .+..++..++.+|
T Consensus 248 ~~l~~~~~~~~~------~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 248 AWLQKFRGSSSE------VPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHCCSEECC------CBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHhcccccCc------cccCCchHhCCcChhhcCHHHhccC
Confidence 224444555555 344444433 4555666666666
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=213.83 Aligned_cols=283 Identities=19% Similarity=0.184 Sum_probs=207.5
Q ss_pred CCCCCCCCCCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCcccc
Q 048333 19 ASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLEL 98 (413)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 98 (413)
+.|.. ....|.|.++ |. .+++.++ .+|. .+ .++|++|++++|.+... +
T Consensus 21 ~~~~~---~~~~C~~~~~-c~----------~~~~~l~-~iP~--~~--~~~L~~L~l~~n~i~~~--~----------- 68 (353)
T 2z80_A 21 ESSNQ---ASLSCDRNGI-CK----------GSSGSLN-SIPS--GL--TEAVKSLDLSNNRITYI--S----------- 68 (353)
T ss_dssp ---------CCEECTTSE-EE----------CCSTTCS-SCCT--TC--CTTCCEEECTTSCCCEE--C-----------
T ss_pred cCCCc---cCCCCCCCeE-ee----------CCCCCcc-cccc--cc--cccCcEEECCCCcCccc--C-----------
Confidence 44554 6778888876 53 3444443 2332 23 25899999999987643 1
Q ss_pred CCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCc-cccCCCCccEEEC
Q 048333 99 QKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDL 177 (413)
Q Consensus 99 ~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l 177 (413)
+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++. ++. .+.++++|++|++
T Consensus 69 -----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 69 -----NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------------LSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp -----TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------------CCHHHHTTCTTCSEEEC
T ss_pred -----HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------------CCHhHhCCCccCCEEEC
Confidence 1246678999999999999987777789999999999999998873 333 3788999999999
Q ss_pred CCCccccccccccccccccc--cccCCCCccEEeCCCCc-CCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 048333 178 SLNELQGEAASFRCFGELPI--SMGNLGSLKELDLSQNG-FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK 254 (413)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 254 (413)
++|.++.. |. .+..+++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 132 ~~n~l~~l----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 132 LGNPYKTL----------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TTCCCSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCCccc----------CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 99988743 33 67888999999999984 5544566788899999999999988877788888899999
Q ss_pred EEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc---cCCCCCcEEEccCCcccc----cccccccCCCCCCE
Q 048333 255 LLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI---GNLRSLEVIYIAKCNFSG----QITSSLRNLTQLVV 327 (413)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~ 327 (413)
+|++++|.+.......+..+++|+.|++++|.+.+..+..+ ...+.++.+++.++.+.+ .+|..+..+++|+.
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 99999998744333445568899999999998876443333 235678888888887764 35666778888888
Q ss_pred EECCCCcCcceechhHhhhcccCCCeeeccCcccc
Q 048333 328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362 (413)
Q Consensus 328 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 362 (413)
|++++|.+. .++ ...+..+++|++|++++|++.
T Consensus 282 L~Ls~N~l~-~i~-~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 282 LEFSRNQLK-SVP-DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EECCSSCCC-CCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCCCC-ccC-HHHHhcCCCCCEEEeeCCCcc
Confidence 888888887 344 224678888888888888843
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=211.08 Aligned_cols=279 Identities=15% Similarity=0.086 Sum_probs=141.4
Q ss_pred CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
|+.....+.+++.++ .+|..+. ++|++|++++|.++. ..+..+.++++|++|++++|.+++.
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~---- 91 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITY-----------ISNSDLQRCVNLQALVLTSNGINTI---- 91 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEE----
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcc-----------cCHHHhccCCCCCEEECCCCccCcc----
Confidence 344444555555554 3343332 356666666665542 1223455556666666666655532
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEEecCCc-ccccc
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP-WSTGNFSSLKLLNLRSCG-FWSKV 267 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~ 267 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|. +....
T Consensus 92 -----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 92 -----EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred -----CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 23345555666666666666554333345556666666666665553222 245555666666666653 33333
Q ss_pred chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechh-Hhhh
Q 048333 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD-VLLT 346 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~ 346 (413)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++......+..+++|+.|++++|.+.+..... ....
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 445555666666666666655444555555666666666666654222223334566666666666555322100 0122
Q ss_pred cccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcchHh-hcCCCCcEEeCCCCCC
Q 048333 347 SWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPNFL-ENQNHLVILNLSDNRI 413 (413)
Q Consensus 347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~n~i 413 (413)
..+.++.++++++.+.... ....+..+ .+++|++|++++|+++.+|..+ .++++|+.|++++|++
T Consensus 247 ~~~~l~~l~L~~~~l~~~~--l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDES--LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCCEEEEESCBCCHHH--HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccchhhccccccccccCcc--hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 3444555555555532211 11112222 4556666666666666665543 5666666666666653
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.3e-25 Score=205.41 Aligned_cols=228 Identities=21% Similarity=0.299 Sum_probs=182.4
Q ss_pred cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
..+++++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------~lp~~~~~l~~L~~L~Ls~n~l~----- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLETLTLARNPLR----- 140 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------CCCSCGGGGTTCSEEEEESCCCC-----
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------chhHHHhccCCCCEEECCCCccc-----
Confidence 3588999999999987 67777888999999999999876 56778888999999999999887
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhC---------CCCCCEEEccCCcCcccCCcccCCCCCCcEEEec
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN---------LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 259 (413)
.+|..+..+++|++|++++|.....+|..+.. +++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 141 -----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 141 -----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp -----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred -----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence 26778889999999999998777677766544 788888888888776 667777788888888888
Q ss_pred CCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCccee
Q 048333 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV 339 (413)
Q Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 339 (413)
+|.+. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 215 ~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 88774 45556778888888888888777777777777888888888888777777777778888888888888777766
Q ss_pred chhHhhhcccCCCeeeccCccccc
Q 048333 340 ELDVLLTSWKNLEALDISLNRSSV 363 (413)
Q Consensus 340 ~~~~~~~~~~~L~~L~l~~~~i~~ 363 (413)
+ . .+..+++|+.+++..+.+..
T Consensus 294 P-~-~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 294 P-S-LIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp C-G-GGGGSCTTCEEECCGGGSCC
T ss_pred c-H-HHhhccCceEEeCCHHHHHH
Confidence 6 4 67778888888887766433
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=9.3e-24 Score=201.35 Aligned_cols=248 Identities=18% Similarity=0.205 Sum_probs=172.7
Q ss_pred CCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc
Q 048333 112 NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC 191 (413)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 191 (413)
....++.++..++ .+|..+ .++++.|++++|.+.. ..+..+.++++|+.|++++|.++..
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i------ 103 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQI-----------IKVNSFKHLRHLEILQLSRNHIRTI------ 103 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCE-----------ECTTTTSSCSSCCEEECCSSCCCEE------
T ss_pred CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCe-----------eCHHHhhCCCCCCEEECCCCcCCcc------
Confidence 4566777776665 455544 2678888888888763 3346677788888888888877754
Q ss_pred cccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc-chh
Q 048333 192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV-PHS 270 (413)
Q Consensus 192 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~ 270 (413)
.+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++...... +..
T Consensus 104 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 104 ---EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp ---CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred ---ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence 2355777788888888888877555556777888888888888777555666777888888888775433333 345
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 350 (413)
|..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++
T Consensus 181 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~ 256 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-N-AFDNLQS 256 (440)
T ss_dssp TTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-T-SSTTCTT
T ss_pred hhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-h-hhcCCCC
Confidence 7777888888888887763 22 46677788888888887776667777777888888888887765443 3 5667777
Q ss_pred CCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333 351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
|++|++++|.++.++...+. .+++|+.|++++|.+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFT-----PLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTS-----SCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccChhHhc-----cccCCCEEEcCCCCcc
Confidence 88888888776544322211 4567777777777664
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=7.9e-24 Score=202.54 Aligned_cols=226 Identities=25% Similarity=0.255 Sum_probs=101.0
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
+++++|++++|.+.+..+..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~----- 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-----------IEVGAFNGLASLNTLELFDNWLTVI----- 138 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSBC-----
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-----------cChhhccCcccCCEEECCCCcCCcc-----
Confidence 344455555554444444444445555555555544441 2233444444555555555544422
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCc-CcccCCcccCCCCCCcEEEecCCccccccch
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK-LSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 269 (413)
.+..+..+++|++|++++|.+....+..+..+++|+.|+++++. +....+..+..+++|+.|++++|.+.+ .+
T Consensus 139 ----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 212 (452)
T 3zyi_A 139 ----PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP- 212 (452)
T ss_dssp ----CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-
T ss_pred ----ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-
Confidence 11224444455555555554443333344444555555554422 221222234444455555555544422 22
Q ss_pred hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK 349 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 349 (413)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+... . .+..++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~~l~ 290 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-D-LFTPLR 290 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-T-SSTTCT
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-H-Hhcccc
Confidence 24444455555555554444444444445555555555555444444444445555555555554442222 1 334444
Q ss_pred CCCeeeccCcc
Q 048333 350 NLEALDISLNR 360 (413)
Q Consensus 350 ~L~~L~l~~~~ 360 (413)
+|+.|++++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 55555555544
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=8.3e-24 Score=201.68 Aligned_cols=208 Identities=23% Similarity=0.252 Sum_probs=119.0
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+..+++|++|++++|.+....+..|.++++|++|++++|.++. ..+..+..+++|++|++++|.++..
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~- 151 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-----------IPNGAFVYLSKLKELWLRNNPIESI- 151 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-----------CCTTTSCSCSSCCEEECCSCCCCEE-
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-----------eCHhHhhccccCceeeCCCCccccc-
Confidence 5556666666666666655444556666666666666666552 2223455566666666666665532
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 265 (413)
.+..+..+++|++|+++++.....++ ..+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+.+
T Consensus 152 --------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 152 --------PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp --------CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred --------CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 12345556666666666543322332 34556666666666666555 233 24555666666666666655
Q ss_pred ccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333 266 KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55555666666666666666665555555556666666666666665444455555666666666666554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=9.9e-24 Score=201.86 Aligned_cols=248 Identities=18% Similarity=0.183 Sum_probs=195.1
Q ss_pred CCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc
Q 048333 112 NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC 191 (413)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 191 (413)
....++.++..++ .+|..+ .+++++|++++|.++. ..+..+.++++|+.|++++|.++..
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~------ 114 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQM-----------IQADTFRHLHHLEVLQLGRNSIRQI------ 114 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEE------
T ss_pred CCcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCce-----------ECHHHcCCCCCCCEEECCCCccCCc------
Confidence 4567888887776 466544 3689999999998873 4567788999999999999988854
Q ss_pred cccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc-chh
Q 048333 192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV-PHS 270 (413)
Q Consensus 192 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~ 270 (413)
.+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.+ +..
T Consensus 115 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 115 ---EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred ---ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 3466888999999999999988666667888999999999999888666667888999999999886543444 345
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 350 (413)
+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+.++++
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~ 267 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-N-AFDGLAS 267 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-T-TTTTCTT
T ss_pred ccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-H-HhcCCCC
Confidence 78889999999999988743 357778899999999999887778888889999999999998875544 3 6778888
Q ss_pred CCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333 351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
|++|++++|.++.++...+. .+++|++|++++|.+.
T Consensus 268 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFT-----PLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCSCCCTTSST-----TCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCccChHHhc-----cccCCCEEEccCCCcC
Confidence 99999999886654432221 4678888888888765
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.4e-23 Score=202.80 Aligned_cols=257 Identities=21% Similarity=0.193 Sum_probs=179.4
Q ss_pred cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333 69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148 (413)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 148 (413)
.+++.|+++++.+.. +|..+ .++|++|++++|.++ .+|. .+++|++|++++|.++
T Consensus 40 ~~l~~L~ls~n~L~~--lp~~l-------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 94 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPDCL-------------------PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT 94 (622)
T ss_dssp HCCCEEECCSSCCSC--CCSCC-------------------CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS
T ss_pred CCCcEEEecCCCcCc--cChhh-------------------CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC
Confidence 357888888887763 44321 267888888888776 3444 4677888888888775
Q ss_pred ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333 149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS 228 (413)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 228 (413)
.+|. .+++|++|++++|.++. +|. .+++|+.|++++|.+.. +|.. +++
T Consensus 95 ------------~lp~---~l~~L~~L~Ls~N~l~~----------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~ 142 (622)
T 3g06_A 95 ------------SLPV---LPPGLLELSIFSNPLTH----------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG 142 (622)
T ss_dssp ------------CCCC---CCTTCCEEEECSCCCCC----------CCC---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred ------------cCCC---CCCCCCEEECcCCcCCC----------CCC---CCCCcCEEECCCCCCCc-CCCC---CCC
Confidence 2343 56778888888887764 233 45678888888887753 4442 377
Q ss_pred CCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccC
Q 048333 229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308 (413)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 308 (413)
|++|++++|.+.. ++. .+++|+.|++++|.+.. ++ ..+++|+.|++++|.+.. ++. .+++|+.|++++
T Consensus 143 L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 143 LQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN 210 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence 8888888887763 332 34678888888887743 44 446778888888887764 222 247888888888
Q ss_pred CcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCC
Q 048333 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC 388 (413)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~ 388 (413)
|.++ .++. .+++|+.|++++|.+.+ ++ ..+++|++|++++|.++.++. .+++|+.|++++|
T Consensus 211 N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp-----~~l~~L~~L~Ls~N~L~~lp~---------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 211 NRLT-SLPA---LPSGLKELIVSGNRLTS-LP-----VLPSELKELMVSGNRLTSLPM---------LPSGLLSLSVYRN 271 (622)
T ss_dssp SCCS-SCCC---CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSS
T ss_pred Cccc-ccCC---CCCCCCEEEccCCccCc-CC-----CCCCcCcEEECCCCCCCcCCc---------ccccCcEEeCCCC
Confidence 8876 3443 24778888888888774 22 356788888888888765543 3467888888888
Q ss_pred CCCCcchHhhcCCCCcEEeCCCCCC
Q 048333 389 NLTKFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 389 ~l~~l~~~~~~l~~L~~L~l~~n~i 413 (413)
.++.+|..+.++++|+.|++++|+|
T Consensus 272 ~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 272 QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCcCCHHHhhccccCEEEecCCCC
Confidence 8888888888888888888888875
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.9e-26 Score=209.67 Aligned_cols=251 Identities=18% Similarity=0.167 Sum_probs=157.0
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcccc-------CCCCccEEECCC
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG-------NLSKLLHLDLSL 179 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~ 179 (413)
++..++|++|++++|.+ .+|..+... |++|+++++.+.. ..++..+. ++++|++|++++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~----------~~~~~~~~~~~~~~~~l~~L~~L~L~~ 104 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRA----------ARIPSRILFGALRVLGISGLQELTLEN 104 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEE----------EECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccC----------CCcCHHHHHHHHHhcCcCCccEEEccC
Confidence 55677888899988888 566655443 8888888888753 13344333 678888888888
Q ss_pred Cccccccccccccccccccc--cCCCCccEEeCCCCcCCCcchhhhhCC-----CCCCEEEccCCcCcccCCcccCCCCC
Q 048333 180 NELQGEAASFRCFGELPISM--GNLGSLKELDLSQNGFFGELPTSIRNL-----FSLEKLDLSFNKLSGEFPWSTGNFSS 252 (413)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~ 252 (413)
|.+++. .|..+ ..+++|++|++++|.+... |..+..+ ++|++|++++|.+....+..+..+++
T Consensus 105 n~l~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 105 LEVTGT---------APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp EBCBSC---------CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred Ccccch---------hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 888754 44444 6778888888888887654 5555554 66777777776666555555666666
Q ss_pred CcEEEecCCccccc--cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccc---cccccccCCCCCCE
Q 048333 253 LKLLNLRSCGFWSK--VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG---QITSSLRNLTQLVV 327 (413)
Q Consensus 253 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~---~~~~~~~~~~~L~~ 327 (413)
|++|++++|.+.+. .+..+ .+..+++|+.|++++|.+++ .....+..+++|++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSE
T ss_pred CCEEECCCCCcCcchHHHHHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCE
Confidence 66666666654332 11111 11344555555555555541 11123345566666
Q ss_pred EECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEe
Q 048333 328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILN 407 (413)
Q Consensus 328 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 407 (413)
|++++|.+.+..+.. .+..+++|++|++++|.++.++... . ++|++|++++|+++.+|. +..+++|+.|+
T Consensus 233 L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~ip~~~-------~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 233 LDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLKQVPKGL-------P-AKLSVLDLSYNRLDRNPS-PDELPQVGNLS 302 (312)
T ss_dssp EECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCSSCCSSC-------C-SEEEEEECCSSCCCSCCC-TTTSCEEEEEE
T ss_pred EECCCCcCCcccchh-hhhhcCCCCEEECCCCccChhhhhc-------c-CCceEEECCCCCCCCChh-HhhCCCCCEEe
Confidence 666666666544212 3445667777777777755443221 2 567788888888777666 77778888888
Q ss_pred CCCCCC
Q 048333 408 LSDNRI 413 (413)
Q Consensus 408 l~~n~i 413 (413)
+++|+|
T Consensus 303 L~~N~l 308 (312)
T 1wwl_A 303 LKGNPF 308 (312)
T ss_dssp CTTCTT
T ss_pred ccCCCC
Confidence 888765
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.8e-26 Score=206.07 Aligned_cols=154 Identities=23% Similarity=0.198 Sum_probs=87.8
Q ss_pred CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc--CCccc--CCCCCCcEEEecCCcccc--cc-chhhccCC
Q 048333 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE--FPWST--GNFSSLKLLNLRSCGFWS--KV-PHSIGNFT 275 (413)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~--~~-~~~~~~~~ 275 (413)
++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ .. ...+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 3444444444444433334444444455555544443221 11112 455666666666665531 11 12334567
Q ss_pred CCCeEecCCcccCCccc-ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCee
Q 048333 276 RLQFLFLGFNNFSGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL 354 (413)
Q Consensus 276 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 354 (413)
+|++|++++|.+.+..+ ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|.+.+. + .+..+++|++|
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p---~~~~l~~L~~L 301 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P---SPDELPQVGNL 301 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C---CTTTSCEEEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h---hHhhCCCCCEE
Confidence 77777777777765432 34445677777777777776 5555444 7778888888877654 3 25677778888
Q ss_pred eccCccccc
Q 048333 355 DISLNRSSV 363 (413)
Q Consensus 355 ~l~~~~i~~ 363 (413)
++++|+++.
T Consensus 302 ~L~~N~l~~ 310 (312)
T 1wwl_A 302 SLKGNPFLD 310 (312)
T ss_dssp ECTTCTTTC
T ss_pred eccCCCCCC
Confidence 888877544
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=9.4e-25 Score=198.97 Aligned_cols=263 Identities=16% Similarity=0.106 Sum_probs=202.4
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCcc
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVS 122 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~ 122 (413)
.+++..+++.+.+...... .+..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 10 ~~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~------------------~~~~~~~l~~L~~L~Ls~n~ 69 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI------------------SAADLAPFTKLELLNLSSNV 69 (317)
T ss_dssp TEEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC------------------CHHHHTTCTTCCEEECTTSC
T ss_pred CceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC------------------CHHHhhCCCcCCEEECCCCc
Confidence 3566677777766544433 456678999999999988753 13467789999999999999
Q ss_pred CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCC
Q 048333 123 IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNL 202 (413)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l 202 (413)
+.+..+ +..+++|++|++++|.++.+ ...++|+.|++++|.++... ...+
T Consensus 70 l~~~~~--~~~l~~L~~L~Ls~n~l~~l----------------~~~~~L~~L~l~~n~l~~~~------------~~~~ 119 (317)
T 3o53_A 70 LYETLD--LESLSTLRTLDLNNNYVQEL----------------LVGPSIETLHAANNNISRVS------------CSRG 119 (317)
T ss_dssp CEEEEE--ETTCTTCCEEECCSSEEEEE----------------EECTTCCEEECCSSCCSEEE------------ECCC
T ss_pred CCcchh--hhhcCCCCEEECcCCccccc----------------cCCCCcCEEECCCCccCCcC------------cccc
Confidence 875443 88899999999999987642 23379999999999987542 2235
Q ss_pred CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCccc-CCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281 (413)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 281 (413)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+. +. ...+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEE
Confidence 789999999999986666678888999999999998876555555 4678999999999988544 32 33588999999
Q ss_pred cCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 282 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
+++|.+.. .+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+..... ...+..++.|+.|+++++.
T Consensus 198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~-~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL-RDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred CCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH-HHHHhccccceEEECCCch
Confidence 99998884 4445778899999999999987 567778888999999999999873322 2377888889999888654
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.6e-26 Score=227.57 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=123.8
Q ss_pred ccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecC----------C-c
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS----------C-G 262 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~----------~-~ 262 (413)
+|..+..+++|++|++++|.+..... ..+..+++|+.|+++++.....++.....+++|++|++++ | .
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 34444555666666666666432222 3345666666666662221112222234456677777763 2 3
Q ss_pred cccc-cchhhccCCCCCeEecCCcccCCcccccccC-CCCCcEEEcc----CCccccc-----ccccccCCCCCCEEECC
Q 048333 263 FWSK-VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGN-LRSLEVIYIA----KCNFSGQ-----ITSSLRNLTQLVVLDMA 331 (413)
Q Consensus 263 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~L~----~~~~~~~-----~~~~~~~~~~L~~L~l~ 331 (413)
+.+. .......+++|++|+++.+.+++..+..+.. +++|+.|++. .+.+++. ++..+..+++|++|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 3222 2222345677777777666666544444544 6777877775 3444432 23335567888888886
Q ss_pred CCc--CcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC--CcchHhhcCCCCcEE
Q 048333 332 QNS--YGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT--KFPNFLENQNHLVIL 406 (413)
Q Consensus 332 ~n~--~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L 406 (413)
.|. +++... ......+++|++|++++|.++.. ..+... .+++|++|++++|.++ .++..+..+++|+.|
T Consensus 445 ~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 445 LRQGGLTDLGL-SYIGQYSPNVRWMLLGYVGESDE-----GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CCGGGCCHHHH-HHHHHSCTTCCEEEECSCCSSHH-----HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred cCCCCccHHHH-HHHHHhCccceEeeccCCCCCHH-----HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 543 443322 32344578888888888874321 111111 5678999999999887 356666788999999
Q ss_pred eCCCCCC
Q 048333 407 NLSDNRI 413 (413)
Q Consensus 407 ~l~~n~i 413 (413)
++++|++
T Consensus 519 ~ls~n~i 525 (592)
T 3ogk_B 519 WVQGYRA 525 (592)
T ss_dssp EEESCBC
T ss_pred ECcCCcC
Confidence 9998874
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2e-24 Score=196.83 Aligned_cols=243 Identities=17% Similarity=0.134 Sum_probs=185.8
Q ss_pred hhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccc
Q 048333 105 NLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG 184 (413)
Q Consensus 105 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 184 (413)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+... . . +..+++|++|++++|.+++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~-~-~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----------L-D-LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----------E-E-ETTCTTCCEEECCSSEEEE
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----------h-h-hhhcCCCCEEECcCCcccc
Confidence 3455678999999999999887778899999999999999998732 2 2 7889999999999999874
Q ss_pred ccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccc
Q 048333 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264 (413)
Q Consensus 185 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 264 (413)
. + ..++|++|++++|.+....+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 95 l----------~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 95 L----------L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp E----------E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred c----------c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 3 2 237899999999988754433 3678999999999888666667778889999999999886
Q ss_pred cccchhh-ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhH
Q 048333 265 SKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDV 343 (413)
Q Consensus 265 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 343 (413)
+..+..+ ..+++|++|++++|.+.+. .....+++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+ ++ .
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~-~- 231 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IE-K- 231 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-EC-T-
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hh-h-
Confidence 6655555 4678899999999988743 233457889999999998874 44457788899999999998874 33 2
Q ss_pred hhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCC
Q 048333 344 LLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSC 388 (413)
Q Consensus 344 ~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~ 388 (413)
.+..+++|+.|++++|++.. ...+... .+++|+.+++.++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEECCCc
Confidence 56778889999999988531 1222222 5666777776633
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.6e-23 Score=203.40 Aligned_cols=281 Identities=19% Similarity=0.161 Sum_probs=181.4
Q ss_pred CCCCCCCCCCCCCCcccceEEe------eCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccc
Q 048333 17 TMASWKPEEGSVDCYSWDVVHC------NKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI 90 (413)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 90 (413)
..++|.. ..++|.|.+..+ .-...+++.|+++++.+. .++. .+. ++|++|++++|.+.. ++..+
T Consensus 11 ~w~~W~~---~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~~l 80 (622)
T 3g06_A 11 VWSAWRR---AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPALP 80 (622)
T ss_dssp HHHHHHH---TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCCCC
T ss_pred HHHHHHh---cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCCcC
Confidence 3456876 778899965321 111236899999999987 4444 343 899999999998874 66666
Q ss_pred cCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC
Q 048333 91 INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170 (413)
Q Consensus 91 ~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 170 (413)
.+|+.|++.++.+...-..+++|++|++++|.+.+ +|. .+++|++|++++|.++. +|.. ++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~------------lp~~---l~ 141 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS------------LPVL---PP 141 (622)
T ss_dssp TTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC------------CCCC---CT
T ss_pred CCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc------------CCCC---CC
Confidence 67777777766655443366777777777777764 333 45677777777777652 3332 36
Q ss_pred CccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF 250 (413)
Q Consensus 171 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 250 (413)
+|++|++++|.++.. |. .+.+|+.|++++|.+.. +| ..+++|+.|++++|.+.. ++. .+
T Consensus 142 ~L~~L~Ls~N~l~~l----------~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~ 200 (622)
T 3g06_A 142 GLQELSVSDNQLASL----------PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LP 200 (622)
T ss_dssp TCCEEECCSSCCSCC----------CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred CCCEEECcCCcCCCc----------CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence 777777777776632 22 23567777777777653 44 345677777777777653 332 23
Q ss_pred CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEEC
Q 048333 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM 330 (413)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 330 (413)
++|+.|++++|.+. .++. .+++|+.|++++|.+.. ++ ..+++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 201 ~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred chhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 66777777777663 3332 23667777777777664 22 34567777777777776 3443 4567777777
Q ss_pred CCCcCcceechhHhhhcccCCCeeeccCcccc
Q 048333 331 AQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362 (413)
Q Consensus 331 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 362 (413)
++|.+. .++ . .+..+++|+.|++++|+++
T Consensus 269 s~N~L~-~lp-~-~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 269 YRNQLT-RLP-E-SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CSSCCC-SCC-G-GGGGSCTTCEEECCSCCCC
T ss_pred CCCCCC-cCC-H-HHhhccccCEEEecCCCCC
Confidence 777776 333 2 4667777777777777754
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=179.67 Aligned_cols=216 Identities=24% Similarity=0.230 Sum_probs=131.7
Q ss_pred CCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhh
Q 048333 28 VDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLF 107 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 107 (413)
.++|.|.++.|.- ....+.++++++.++. ++. .+. +++++|++++|.+... + +..+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~--~----------------~~~~ 57 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL--P----------------SKAF 57 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC--C----------------TTSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee--C----------------HHHh
Confidence 5899999988752 2456678888887763 333 232 5788888888876643 1 1235
Q ss_pred hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA 187 (413)
Q Consensus 108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 187 (413)
..+++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++..
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~-- 124 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-----------LPIGVFDQLVNLAELRLDRNQLKSL-- 124 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-----------CCTTTTTTCSSCCEEECCSSCCCCC--
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-----------CCHhHcccccCCCEEECCCCccCee--
Confidence 567788888888887775555556777888888888777662 2234456677777777777776643
Q ss_pred cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc
Q 048333 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV 267 (413)
Q Consensus 188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (413)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....
T Consensus 125 -------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 125 -------PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -------CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 2334566667777777776665444444556666666666666555443444455555555555555543333
Q ss_pred chhhccCCCCCeEecCCccc
Q 048333 268 PHSIGNFTRLQFLFLGFNNF 287 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~ 287 (413)
+..+..+++|+.|++++|.+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccccCCCEEEecCCCe
Confidence 33344444555555554443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.8e-23 Score=199.09 Aligned_cols=237 Identities=17% Similarity=0.117 Sum_probs=181.4
Q ss_pred cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
.+++|++|++++|.+.+..|..+..+++|++|++++|.++. ..+ +..+++|+.|++++|.+++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~--l~~l~~L~~L~Ls~N~l~~l--- 95 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----------TLD--LESLSTLRTLDLNNNYVQEL--- 95 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----------EEE--CTTCTTCCEEECCSSEEEEE---
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----------Ccc--cccCCCCCEEEecCCcCCCC---
Confidence 34589999999999988778889999999999999999873 222 78899999999999998743
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP 268 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 268 (413)
+ ..++|+.|++++|.+....+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 96 -------~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 -------L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -------E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -------C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 2 227899999999988755443 45789999999998887777778888899999999998877666
Q ss_pred hhhc-cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333 269 HSIG-NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347 (413)
Q Consensus 269 ~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 347 (413)
..+. .+++|++|++++|.+.+. .....+++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+... .+..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~---~l~~ 235 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEK---ALRF 235 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECT---TCCC
T ss_pred HHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccch---hhcc
Confidence 6665 688999999999988753 234458889999999998875 44457788889999999988875333 4677
Q ss_pred ccCCCeeeccCccccccceeeecccccc-ccccceeeecc
Q 048333 348 WKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLR 386 (413)
Q Consensus 348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~ 386 (413)
+++|+.|++++|.+.. +..+... .++.|+.+++.
T Consensus 236 l~~L~~L~l~~N~l~c-----~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCH-----HHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcC-----cchHHHHHhCCCCcEEecc
Confidence 8888999999888531 1222222 45556666554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=195.51 Aligned_cols=234 Identities=19% Similarity=0.143 Sum_probs=188.9
Q ss_pred CCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCC
Q 048333 134 LSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN 213 (413)
Q Consensus 134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 213 (413)
+++|++|++++|.+. +..|..+..+++|+.|++++|.+++. .| +..+++|+.|++++|
T Consensus 33 ~~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~--l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-----------QISAADLAPFTKLELLNLSSNVLYET---------LD--LESLSTLRTLDLNNN 90 (487)
T ss_dssp GGGCCEEECCSSCCC-----------CCCGGGGTTCTTCCEEECTTSCCEEE---------EE--CTTCTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCC-----------CCCHHHHhCCCCCCEEEeeCCCCCCC---------cc--cccCCCCCEEEecCC
Confidence 448999999999987 34567789999999999999998753 22 788899999999999
Q ss_pred cCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccc
Q 048333 214 GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLG 293 (413)
Q Consensus 214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (413)
.+.. ++ ..++|+.|++++|.+....+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 91 ~l~~-l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 91 YVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp EEEE-EE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred cCCC-CC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 8863 22 338999999999988754443 457899999999999777777888999999999999999876666
Q ss_pred ccc-CCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccc
Q 048333 294 SIG-NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDAT 372 (413)
Q Consensus 294 ~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~ 372 (413)
.+. .+++|+.|++++|.+++..+ ...+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++.++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~lp------- 230 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLIE------- 230 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEEC-------
T ss_pred HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCcccc-------
Confidence 665 68999999999999985422 3358999999999999986555 4778899999999999966433
Q ss_pred ccc-ccccceeeeccCCCCC--CcchHhhcCCCCcEEeCC
Q 048333 373 TDT-TSQKIQYRGLRSCNLT--KFPNFLENQNHLVILNLS 409 (413)
Q Consensus 373 ~~~-~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~ 409 (413)
..+ .+++|+.|++++|.+. .+|..+..++.|+.+++.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 223 5678999999999998 777888888887776653
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.5e-21 Score=174.20 Aligned_cols=202 Identities=23% Similarity=0.199 Sum_probs=121.2
Q ss_pred CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG 283 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (413)
++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555543333345555555666665555554444455556666666666666544444556666666666666
Q ss_pred CcccCCcccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC----eeeccC
Q 048333 284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE----ALDISL 358 (413)
Q Consensus 284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~----~L~l~~ 358 (413)
+|.+.......+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+.+..+ . .+..+++|+ +|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~-~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-T-DLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-G-GGHHHHTCTTCCEEEECCS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-H-HhhhhhhccccceeeecCC
Confidence 6666544444566667777777777776642 46666777777777777777764332 2 444555555 677777
Q ss_pred ccccccceeeeccccccccccceeeeccCCCCCCcchH-hhcCCCCcEEeCCCCCC
Q 048333 359 NRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF-LENQNHLVILNLSDNRI 413 (413)
Q Consensus 359 ~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~i 413 (413)
|.++.++...+ ...+|++|++++|.++.+|.. +.++++|+.|++++|++
T Consensus 187 n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 187 NPMNFIQPGAF------KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCCEECTTSS------CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CcccccCcccc------CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 77554332221 233677777777777766543 46677777777777764
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=8.8e-24 Score=209.39 Aligned_cols=349 Identities=13% Similarity=0.034 Sum_probs=232.2
Q ss_pred ceEEEecCCCcc-cc-ccCCccccccccccceeeccccCCCCCC------CCccccCcCccccCCcch--------hhhh
Q 048333 44 HVIKLNLSHGCL-FG-SINSSSSLFKLVHLKWLNLALNDFNSSE------IPPEIINLSRLELQKPSF--------ENLF 107 (413)
Q Consensus 44 ~l~~L~l~~~~~-~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~i--------~~~~ 107 (413)
++++|++++|.. .. .... ....+++|++|++++|.+.+.. ++..+.+|+.|++..+.+ +..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 499999988862 11 1111 3347899999999998775442 233567788887764433 4456
Q ss_pred hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccc--------cchh------hhhh-cccCCCccccCCCCc
Q 048333 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQA--------MCSF------FLIQ-ISGRIPSSLGNLSKL 172 (413)
Q Consensus 108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--------~~~~------~~~~-~~~~~~~~l~~~~~L 172 (413)
..+++|++|++++|.+.+ ++..+..+++|++|.++.+.... +... .+.. ....++..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 788999999999888764 55667777778877776432110 0000 0000 013345556678899
Q ss_pred cEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccC-----------CcCcc
Q 048333 173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF-----------NKLSG 241 (413)
Q Consensus 173 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~ 241 (413)
++|++++|.+++. .++..+..+++|++|+++.+.....++.....+++|++|++++ +.++.
T Consensus 296 ~~L~Ls~~~l~~~--------~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 296 RKLDLLYALLETE--------DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp CEEEETTCCCCHH--------HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred cEEecCCCcCCHH--------HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 9999999887644 1333467899999999984333333445557789999999994 34432
Q ss_pred c-CCcccCCCCCCcEEEecCCccccccchhhcc-CCCCCeEecC----CcccCCc-----ccccccCCCCCcEEEccCCc
Q 048333 242 E-FPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN-FTRLQFLFLG----FNNFSGD-----LLGSIGNLRSLEVIYIAKCN 310 (413)
Q Consensus 242 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~L~~~~ 310 (413)
. .......+++|+.|++..+.+.+.....+.. +++|+.|+++ .+.+++. ....+..+++|+.|+++.|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 2 2222345799999999888887666666655 8999999996 4455542 22235568999999997654
Q ss_pred --ccccccccc-cCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc--ccccceeeec
Q 048333 311 --FSGQITSSL-RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGL 385 (413)
Q Consensus 311 --~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l 385 (413)
+++.....+ ..+++|+.|++++|.+++... ...+.++++|++|++++|.++ ....... .+++|++|++
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL-MEFSRGCPNLQKLEMRGCCFS------ERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH-HHHHTCCTTCCEEEEESCCCB------HHHHHHHHHHCSSCCEEEE
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHH-HHHHhcCcccCeeeccCCCCc------HHHHHHHHHhcCccCeeEC
Confidence 554433333 458999999999999875333 336788999999999999842 2222222 6789999999
Q ss_pred cCCCCC--CcchHhhcCCCCcEEeCCC
Q 048333 386 RSCNLT--KFPNFLENQNHLVILNLSD 410 (413)
Q Consensus 386 ~~~~l~--~l~~~~~~l~~L~~L~l~~ 410 (413)
++|+++ .+......+|.+....+..
T Consensus 521 s~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 521 QGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 999988 3334445678777665543
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=9.7e-25 Score=216.34 Aligned_cols=332 Identities=15% Similarity=0.114 Sum_probs=172.9
Q ss_pred ccccccceeeccccCCCCCC---CCccccCcCccccCCc-c-----hhhhhhcCCCCcEEEcCCccCCCCcCc----ccc
Q 048333 66 FKLVHLKWLNLALNDFNSSE---IPPEIINLSRLELQKP-S-----FENLFEKLSNLKTLNLGDVSIDSTIPH----NIK 132 (413)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~-~-----i~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~ 132 (413)
..+++|++|+++++.+++.. +...+.+|+.|++..+ . ++..+..+++|++|++++|.+++..+. ...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 45677777777777655431 1123456677666543 2 344455778888888877776543322 223
Q ss_pred CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC-ccccccc------------------------
Q 048333 133 NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGEAA------------------------ 187 (413)
Q Consensus 133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~------------------------ 187 (413)
.+++|++|++++|. ..+.. ..+...+..+++|++|++++| .+.+...
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~-------~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSF-------SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCH-------HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred cCCcCcEEEecccC-CcCCH-------HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 56677777777765 11100 001111223455555555554 1110000
Q ss_pred ------------------cc--cccccccccccCCCCccEEeCCCCcCCCc-chhhhhCCCCCCEEEccCCcCcccCCcc
Q 048333 188 ------------------SF--RCFGELPISMGNLGSLKELDLSQNGFFGE-LPTSIRNLFSLEKLDLSFNKLSGEFPWS 246 (413)
Q Consensus 188 ------------------~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 246 (413)
.+ ...+.++..+..+++|++|++++|.+... +...+..+++|+.|++++|.....++..
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l 333 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence 00 00001222223456666666666664322 2223445666666666655111112222
Q ss_pred cCCCCCCcEEEecC---------Cccccccchhh-ccCCCCCeEecCCcccCCccccccc-CCCCCcEEEcc--C----C
Q 048333 247 TGNFSSLKLLNLRS---------CGFWSKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIG-NLRSLEVIYIA--K----C 309 (413)
Q Consensus 247 l~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~--~----~ 309 (413)
...+++|++|++.+ +.+.+.....+ ..+++|+.|.+..+.+.+.....+. .+++|+.|++. + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 22356666676633 22222222222 2366777776666666544444443 36778888877 3 3
Q ss_pred cccc-----cccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc--cccccee
Q 048333 310 NFSG-----QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQY 382 (413)
Q Consensus 310 ~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~ 382 (413)
.+++ .++..+..+++|+.|++++ .+.+... ......+++|++|++++|.++. .....+ .+++|++
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSD------LGMHHVLSGCDSLRK 485 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSH------HHHHHHHHHCTTCCE
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcH------HHHHHHHhcCCCcCE
Confidence 3331 1122345677888888866 4443222 2123347778888888887432 111111 4678888
Q ss_pred eeccCCCCC--CcchHhhcCCCCcEEeCCCCCC
Q 048333 383 RGLRSCNLT--KFPNFLENQNHLVILNLSDNRI 413 (413)
Q Consensus 383 L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i 413 (413)
|++++|.++ .+...+..+++|+.|++++|++
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 888888886 2333455678888888888864
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6e-24 Score=195.46 Aligned_cols=262 Identities=18% Similarity=0.200 Sum_probs=143.2
Q ss_pred CCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccc--cccceeeccccCCCCCCCCccccCcCccccCCcchh
Q 048333 27 SVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKL--VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFE 104 (413)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 104 (413)
...|.+|..+.+. ...++.++++++.+.. . .+..+ ++++.|+++++.+.+. .+.
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~-~~~---------------- 88 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP-LAE---------------- 88 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC-CCS----------------
T ss_pred HHHHHHHHHHhcC--chhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc-chh----------------
Confidence 6677888887653 3456677777665541 1 34444 6666666666655443 111
Q ss_pred hhhhcCCCCcEEEcCCccCCCC-cCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC-cc
Q 048333 105 NLFEKLSNLKTLNLGDVSIDST-IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-EL 182 (413)
Q Consensus 105 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i 182 (413)
+..+++|++|++++|.+.+. ++..+..+++|++|++++|.++ +..+..++.+++|++|++++| .+
T Consensus 89 --~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-----------~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 89 --HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-----------DPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp --CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-----------HHHHHHHTTCTTCSEEECTTCBSC
T ss_pred --hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-----------HHHHHHHhcCCCCCEEECCCCCCC
Confidence 22355666666666655433 4445555566666666665544 123334445555555555555 33
Q ss_pred ccccccccccccccccccCCCCccEEeCCCC-cCCCc-chhhhhCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEEec
Q 048333 183 QGEAASFRCFGELPISMGNLGSLKELDLSQN-GFFGE-LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS-SLKLLNLR 259 (413)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~ 259 (413)
++. .++..+..+++|++|++++| .+... ++..+. .++ +|++|+++
T Consensus 156 ~~~--------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------------------------~l~~~L~~L~l~ 203 (336)
T 2ast_B 156 SEF--------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA------------------------HVSETITQLNLS 203 (336)
T ss_dssp CHH--------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH------------------------HSCTTCCEEECC
T ss_pred CHH--------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH------------------------hcccCCCEEEeC
Confidence 321 12223344445555555544 33321 233333 444 55555555
Q ss_pred CC--ccc-cccchhhccCCCCCeEecCCcc-cCCcccccccCCCCCcEEEccCCc-ccccccccccCCCCCCEEECCCCc
Q 048333 260 SC--GFW-SKVPHSIGNFTRLQFLFLGFNN-FSGDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLDMAQNS 334 (413)
Q Consensus 260 ~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~n~ 334 (413)
+| .+. ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 55 222 2344455667777777777776 555556666777788888887774 33333335667888888888888
Q ss_pred CcceechhHhhhcc-cCCCeeeccCccccc
Q 048333 335 YGGTVELDVLLTSW-KNLEALDISLNRSSV 363 (413)
Q Consensus 335 ~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~ 363 (413)
+.... +..+ ..++.|++++|.++.
T Consensus 283 i~~~~-----~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 283 VPDGT-----LQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp SCTTC-----HHHHHHHSTTSEESCCCSCC
T ss_pred cCHHH-----HHHHHhhCcceEEecccCcc
Confidence 43211 1222 236667788888544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.9e-21 Score=173.52 Aligned_cols=206 Identities=19% Similarity=0.180 Sum_probs=143.9
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~----- 91 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-----------IEDGAYQSLSHLSTLILTGNPIQSL----- 91 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEE-----
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-----------cCHHHccCCcCCCEEECCCCccCcc-----
Confidence 568888888888876555577888888888888887763 2344677788888888888887754
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc-CCcccCCCCCCcEEEecCCccccccch
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE-FPWSTGNFSSLKLLNLRSCGFWSKVPH 269 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 269 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +|..+..+++|++|++++|.+.+..+.
T Consensus 92 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 92 ----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred ----ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 335577778888888888877655554677778888888888777642 466777777888888887777555555
Q ss_pred hhccCCCCC----eEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333 270 SIGNFTRLQ----FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 270 ~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
.+..+++|+ .|++++|.+....+..+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 555555555 67777777664333333 23467777777777765555556667777777777776654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.2e-20 Score=167.69 Aligned_cols=204 Identities=21% Similarity=0.217 Sum_probs=153.9
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
...++++++++.++ .+|..+ .+++++|++++|.+.. ..+..+.++++|++|++++|.++..
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~i----- 76 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSS-----------LPSKAFHRLTKLRLLYLNDNKLQTL----- 76 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCSC-----------CCTTSSSSCTTCCEEECCSSCCSCC-----
T ss_pred CCCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCCe-----------eCHHHhcCCCCCCEEECCCCccCee-----
Confidence 35778888888887 455544 2678889998888763 3345678888899999988888743
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..
T Consensus 77 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 77 ----PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp ----CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 2234577888888888888887555566778888888888888887666666778888888888888876555555
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 7778888888888888876555667778888888888888875555567778888888888887653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.9e-21 Score=171.88 Aligned_cols=200 Identities=24% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+.. + ..+..+++|++|++++|.++..
T Consensus 40 l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~------------~-~~l~~l~~L~~L~L~~n~l~~~---- 100 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD------------I-SALKELTNLTYLILTGNQLQSL---- 100 (272)
T ss_dssp HTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC------------C-GGGTTCTTCCEEECTTSCCCCC----
T ss_pred ccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC------------c-hhhcCCCCCCEEECCCCccCcc----
Confidence 4444555554444431 11 24444555555555544431 1 2344444555555555544422
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 269 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus 101 -----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 101 -----PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp -----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -----ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 122234445555555555554433333344555555555555554433333344555555555555555433333
Q ss_pred hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 340 (413)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+++|+.++++.|.+.+.++
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCccc
Confidence 4455555555555555555444444455555555555555443 224445555555555554443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=7.9e-23 Score=191.62 Aligned_cols=248 Identities=18% Similarity=0.191 Sum_probs=169.7
Q ss_pred hhhhhhcCCCCcEEEcCCccCCCC----cCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcc-------ccCCCC
Q 048333 103 FENLFEKLSNLKTLNLGDVSIDST----IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS-------LGNLSK 171 (413)
Q Consensus 103 i~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-------l~~~~~ 171 (413)
+...+..+++|++|++++|.+... ++..+..+++|++|++++|.+..+. +.+|.. +..+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~--------~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK--------DEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG--------GGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc--------cchhHHHHHHHHHHhhCCc
Confidence 345577889999999999988754 3344678899999999987654221 223333 367889
Q ss_pred ccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcch----hhhhCC---------CCCCEEEccCCc
Q 048333 172 LLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP----TSIRNL---------FSLEKLDLSFNK 238 (413)
Q Consensus 172 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~---------~~L~~L~l~~~~ 238 (413)
|++|++++|.++..... .++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.
T Consensus 96 L~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp CCEEECCSCCCCTTTHH-----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred ccEEECCCCcCCHHHHH-----HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 99999999988763221 255667788899999999988753323 334444 788888888887
Q ss_pred Ccc-cCC---cccCCCCCCcEEEecCCcccc-----ccchhhccCCCCCeEecCCcccC----CcccccccCCCCCcEEE
Q 048333 239 LSG-EFP---WSTGNFSSLKLLNLRSCGFWS-----KVPHSIGNFTRLQFLFLGFNNFS----GDLLGSIGNLRSLEVIY 305 (413)
Q Consensus 239 ~~~-~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~ 305 (413)
+.. ..+ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+. ...+..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 752 233 345567788888888887742 22335677788888888888774 34455667778888888
Q ss_pred ccCCccccc----cccccc--CCCCCCEEECCCCcCcce----echhHhhhcccCCCeeeccCcccccc
Q 048333 306 IAKCNFSGQ----ITSSLR--NLTQLVVLDMAQNSYGGT----VELDVLLTSWKNLEALDISLNRSSVL 364 (413)
Q Consensus 306 L~~~~~~~~----~~~~~~--~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~l 364 (413)
+++|.+++. ++..+. .+++|+.|++++|.+.+. ++ .....++++|++|++++|.++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-TVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-HHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-HHHHhcCCCceEEEccCCcCCcc
Confidence 888887644 344543 378888888888887752 33 21235578888888888886543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=8.7e-22 Score=175.26 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=174.4
Q ss_pred CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 189 (413)
+.++..+++..+.+.+.. ....+++|+.|+++++.+..+ ..+..+++|++|++++|.+++.
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-------------~~l~~l~~L~~L~l~~n~l~~~---- 78 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-------------QGIQYLPNVRYLALGGNKLHDI---- 78 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC-------------TTGGGCTTCCEEECTTSCCCCC----
T ss_pred HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc-------------cccccCCCCcEEECCCCCCCCc----
Confidence 345556666666665432 355789999999999987632 3477899999999999998743
Q ss_pred cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269 (413)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 269 (413)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 79 -------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 79 -------SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp -------GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -------hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 3577889999999999999866667788999999999999998866666788889999999999988766666
Q ss_pred hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK 349 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 349 (413)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .++
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~ 222 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCP 222 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------CTT
T ss_pred HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------cCc
Confidence 67888999999999998886666667888999999999999987777778889999999999997653 466
Q ss_pred CCCeeeccCcc
Q 048333 350 NLEALDISLNR 360 (413)
Q Consensus 350 ~L~~L~l~~~~ 360 (413)
.|+.|++..|.
T Consensus 223 ~l~~l~~~~n~ 233 (272)
T 3rfs_A 223 GIRYLSEWINK 233 (272)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78888888887
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1e-23 Score=209.00 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=154.8
Q ss_pred cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccC---------C
Q 048333 167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF---------N 237 (413)
Q Consensus 167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~---------~ 237 (413)
..+++|++|++++|.+++. .++..+..+++|++|++++|.....++.....+++|+.|++.+ +
T Consensus 286 ~~~~~L~~L~L~~~~l~~~--------~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSY--------DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp HHHTTCCEEECTTCCCCHH--------HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred HhhCCCCEEEccCCCCCHH--------HHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 3578999999999987643 1333466889999999998822222333344689999999944 2
Q ss_pred cCcccCCccc-CCCCCCcEEEecCCccccccchhhc-cCCCCCeEecC--C----cccCCc-----ccccccCCCCCcEE
Q 048333 238 KLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIG-NFTRLQFLFLG--F----NNFSGD-----LLGSIGNLRSLEVI 304 (413)
Q Consensus 238 ~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~l~~~~~L~~L 304 (413)
.++......+ ..+++|+.|.+..+.+.+.....+. .+++|+.|+++ + +.+++. ....+..+++|+.|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 3332111112 2478999998888877655554454 58999999998 3 344421 11224568999999
Q ss_pred EccCCcccccccccccC-CCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc--ccccce
Q 048333 305 YIAKCNFSGQITSSLRN-LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQ 381 (413)
Q Consensus 305 ~L~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~ 381 (413)
++++ .+++..+..+.. +++|+.|++++|.+++... .....++++|++|++++|.++. ...... .+++|+
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM-HHVLSGCDSLRKLEIRDCPFGD------KALLANASKLETMR 509 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH-HHHHHHCTTCCEEEEESCSCCH------HHHHHTGGGGGGSS
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH-HHHHhcCCCcCEEECcCCCCcH------HHHHHHHHhCCCCC
Confidence 9977 666554444444 8999999999999875433 3244779999999999999522 222211 578999
Q ss_pred eeeccCCCCC-CcchHh-hcCCCCcEEeCCCC
Q 048333 382 YRGLRSCNLT-KFPNFL-ENQNHLVILNLSDN 411 (413)
Q Consensus 382 ~L~l~~~~l~-~l~~~~-~~l~~L~~L~l~~n 411 (413)
+|++++|.++ .-...+ ..+|+|+...+.++
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 9999999986 222333 67888876665543
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.8e-23 Score=192.04 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=167.9
Q ss_pred CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc-cccccccccccCCCC
Q 048333 126 TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF-RCFGELPISMGNLGS 204 (413)
Q Consensus 126 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~~~~~~~l~~ 204 (413)
.++..+..+++|++|++++|.+..... ..++..+..+++|++|++++|.+......+ .....+...+..+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAA-------RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHH-------HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHH-------HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 466677788999999999998774211 113344677899999999987554321100 000112233467889
Q ss_pred ccEEeCCCCcCCC----cchhhhhCCCCCCEEEccCCcCcccCC----cccCCC---------CCCcEEEecCCcccc-c
Q 048333 205 LKELDLSQNGFFG----ELPTSIRNLFSLEKLDLSFNKLSGEFP----WSTGNF---------SSLKLLNLRSCGFWS-K 266 (413)
Q Consensus 205 L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~---------~~L~~L~l~~~~~~~-~ 266 (413)
|++|++++|.+.. .++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.+.. .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999998875 366778888899999998888753222 223333 788888888887752 2
Q ss_pred cc---hhhccCCCCCeEecCCcccCCc----ccc-cccCCCCCcEEEccCCccc----ccccccccCCCCCCEEECCCCc
Q 048333 267 VP---HSIGNFTRLQFLFLGFNNFSGD----LLG-SIGNLRSLEVIYIAKCNFS----GQITSSLRNLTQLVVLDMAQNS 334 (413)
Q Consensus 267 ~~---~~~~~~~~L~~L~l~~~~~~~~----~~~-~l~~~~~L~~L~L~~~~~~----~~~~~~~~~~~~L~~L~l~~n~ 334 (413)
.+ ..+..+++|++|++++|.+.+. ... .+..+++|+.|++++|.++ ..++..+..+++|+.|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 33 3566778888888888877632 122 5667788888888888875 3456677778888888888888
Q ss_pred Ccceech--hHhhh--cccCCCeeeccCccccccceeeecccccc--ccccceeeeccCCCCC
Q 048333 335 YGGTVEL--DVLLT--SWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGLRSCNLT 391 (413)
Q Consensus 335 ~~~~~~~--~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~ 391 (413)
+.+.... ...+. .+++|++|++++|.++..+ ....+..+ .+++|++|++++|.++
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g--~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA--VRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH--HHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH--HHHHHHHHHhcCCCceEEEccCCcCC
Confidence 7643211 11332 2778888888888754310 00122222 3577888888888877
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8e-21 Score=170.40 Aligned_cols=204 Identities=20% Similarity=0.251 Sum_probs=159.6
Q ss_pred cccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC
Q 048333 165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244 (413)
Q Consensus 165 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 244 (413)
.+.++++++.++++++.++. +|..+. +.++.|++++|.+....+..+..+++|+.|++++|.++...+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~----------ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA----------LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS----------CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCCc----------CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC
Confidence 46788899999999998874 444443 688999999999987777889999999999999998874333
Q ss_pred cccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCC
Q 048333 245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ 324 (413)
Q Consensus 245 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 324 (413)
...+++|++|++++|.+ ..+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..+..+..+++
T Consensus 73 --~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 --DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp --CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred --CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 26788899999999888 466667788888999999998888666677888888999999988888666667778888
Q ss_pred CCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333 325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT 391 (413)
Q Consensus 325 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 391 (413)
|+.|++++|.+.+... . .+..+++|++|++++|.++.++...+ ..++|+.+++++|.+.
T Consensus 150 L~~L~L~~N~l~~l~~-~-~~~~l~~L~~L~L~~N~l~~ip~~~~------~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 150 LEKLSLANNNLTELPA-G-LLNGLENLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECTTSCCSCCCT-T-TTTTCTTCCEEECCSSCCCCCCTTTT------TTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCCccCH-H-HhcCcCCCCEEECCCCcCCccChhhc------ccccCCeEEeCCCCcc
Confidence 8888888888874333 2 56778888888888888765543332 4457888888888775
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.3e-22 Score=182.42 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=190.6
Q ss_pred CCCcEEEcCCccCCCCcCccccCC--CCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNL--SSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
..+++++++++.+. +..+..+ ++++.|+++++.+.. . +..+..+++|++|++++|.+++.
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~-----------~-~~~~~~~~~L~~L~L~~~~l~~~--- 108 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQ-----------P-LAEHFSPFRVQHMDLSNSVIEVS--- 108 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECS-----------C-CCSCCCCBCCCEEECTTCEECHH---
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccc-----------c-chhhccCCCCCEEEccCCCcCHH---
Confidence 45788888887765 3445555 788899998888762 2 33356788999999999887643
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCC-cCcc-cCCcccCCCCCCcEEEecCC-cccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSG-EFPWSTGNFSSLKLLNLRSC-GFWS 265 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~ 265 (413)
.++..+..+++|++|++++|.+....+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+.+
T Consensus 109 -----~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 109 -----TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp -----HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred -----HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 24556778889999999999887677788888999999999998 5553 25555677899999999999 7754
Q ss_pred c-cchhhccCC-CCCeEecCCcc--cC-CcccccccCCCCCcEEEccCCc-ccccccccccCCCCCCEEECCCCcCccee
Q 048333 266 K-VPHSIGNFT-RLQFLFLGFNN--FS-GDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLDMAQNSYGGTV 339 (413)
Q Consensus 266 ~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 339 (413)
. .+..+..++ +|++|++++|. +. ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|......
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 3 567788899 99999999994 44 2345566779999999999999 66677778889999999999999532222
Q ss_pred chhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhh
Q 048333 340 ELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLE 398 (413)
Q Consensus 340 ~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~ 398 (413)
.+. .+..+++|++|++++| +.. ..... ....++.|++++|.++ ..|..+.
T Consensus 264 ~~~-~l~~~~~L~~L~l~~~-i~~---~~~~~----l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 264 TLL-ELGEIPTLKTLQVFGI-VPD---GTLQL----LKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGG-GGGGCTTCCEEECTTS-SCT---TCHHH----HHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHH-HHhcCCCCCEEeccCc-cCH---HHHHH----HHhhCcceEEecccCccccCCccc
Confidence 222 5778999999999999 322 11111 1134777889999998 4454443
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=2e-20 Score=167.76 Aligned_cols=204 Identities=22% Similarity=0.245 Sum_probs=172.2
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+.+++++++++++++.++ .+|..+ .+++++|++++|.+.. ..+..+..+++|++|++++|.++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~- 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYT-----------FSLATLMPYTRLTQLNLDRAELTKL- 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSE-----------EEGGGGTTCTTCCEEECTTSCCCEE-
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCc-----------cCHHHhhcCCCCCEEECCCCccCcc-
Confidence 456889999999999987 455544 3789999999999873 3456788899999999999998854
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK 266 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 266 (413)
+. ...+++|+.|++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|++|++++|.+...
T Consensus 71 ---------~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 71 ---------QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp ---------EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred ---------cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 22 267889999999999987 6777788899999999999999866677889999999999999998766
Q ss_pred cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
.+..|..+++|+.|++++|.+.......+..+++|+.|++++|.++ .+|..+...+.|+.+++++|.+..
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 6667888999999999999998666666788999999999999998 677777788899999999998864
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.2e-22 Score=186.72 Aligned_cols=216 Identities=19% Similarity=0.146 Sum_probs=103.0
Q ss_pred hhhhhhcCCCCcEEEcCCccCCCCcC----ccccCCC-CCcEEEccCCcccccchhhhhhcccCCCccccCC-----CCc
Q 048333 103 FENLFEKLSNLKTLNLGDVSIDSTIP----HNIKNLS-SLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL-----SKL 172 (413)
Q Consensus 103 i~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~-----~~L 172 (413)
++..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.. ..+..+..+ ++|
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-----------~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-----------KNSDELVQILAAIPANV 82 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-----------SCHHHHHHHHHTSCTTC
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-----------HHHHHHHHHHhccCCCc
Confidence 34444445556666666666654443 4455555 56666666666553 122222221 566
Q ss_pred cEEECCCCccccccccccccccccccccCC-CCccEEeCCCCcCCCcchhhh----hC-CCCCCEEEccCCcCcccC---
Q 048333 173 LHLDLSLNELQGEAASFRCFGELPISMGNL-GSLKELDLSQNGFFGELPTSI----RN-LFSLEKLDLSFNKLSGEF--- 243 (413)
Q Consensus 173 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~--- 243 (413)
++|++++|.+++..+. .+...+..+ ++|++|++++|.+....+..+ .. .++|++|++++|.+....
T Consensus 83 ~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSD-----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp CEEECCSSCGGGSCHH-----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cEEECcCCcCChHHHH-----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 6666666666543211 011123333 566666666666544333222 22 235666666666554221
Q ss_pred -CcccCCCC-CCcEEEecCCccccccchh----hccC-CCCCeEecCCcccCCcc----cccccC-CCCCcEEEccCCcc
Q 048333 244 -PWSTGNFS-SLKLLNLRSCGFWSKVPHS----IGNF-TRLQFLFLGFNNFSGDL----LGSIGN-LRSLEVIYIAKCNF 311 (413)
Q Consensus 244 -~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~L~~~~~ 311 (413)
+..+...+ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+.. +..+.. .++|+.|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 22222332 5566666665554333322 2223 35556666555554321 222222 23555555555555
Q ss_pred ccccc----ccccCCCCCCEEECCCCc
Q 048333 312 SGQIT----SSLRNLTQLVVLDMAQNS 334 (413)
Q Consensus 312 ~~~~~----~~~~~~~~L~~L~l~~n~ 334 (413)
++..+ ..+..+++|+.|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 43222 223444555555555554
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.2e-22 Score=185.66 Aligned_cols=265 Identities=18% Similarity=0.185 Sum_probs=190.8
Q ss_pred EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC-CccEEECCCCccccccccccccc
Q 048333 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS-KLLHLDLSLNELQGEAASFRCFG 193 (413)
Q Consensus 115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~ 193 (413)
+.+++.+.+.+.+|..+...++|++|++++|.+.+.+. ..+...+..++ +|++|++++|.+++..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----- 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST-------VELIQAFANTPASVTSLNLSGNSLGFKNSD----- 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTCCTTCCEEECCSSCGGGSCHH-----
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH-------HHHHHHHHhCCCceeEEECcCCCCCHHHHH-----
Confidence 46788999988888877777779999999999874311 01115567788 899999999999865321
Q ss_pred cccccccCC-CCccEEeCCCCcCCCcchhh----hhCC-CCCCEEEccCCcCcccCCcc----cCC-CCCCcEEEecCCc
Q 048333 194 ELPISMGNL-GSLKELDLSQNGFFGELPTS----IRNL-FSLEKLDLSFNKLSGEFPWS----TGN-FSSLKLLNLRSCG 262 (413)
Q Consensus 194 ~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~ 262 (413)
.+...+... ++|++|++++|.+....+.. +..+ ++|++|++++|.++...+.. +.. ..+|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 111222333 89999999999987655553 4445 89999999999987544433 334 3699999999998
Q ss_pred ccccc----chhhccCC-CCCeEecCCcccCCcccccc----cCC-CCCcEEEccCCccccc----ccccccC-CCCCCE
Q 048333 263 FWSKV----PHSIGNFT-RLQFLFLGFNNFSGDLLGSI----GNL-RSLEVIYIAKCNFSGQ----ITSSLRN-LTQLVV 327 (413)
Q Consensus 263 ~~~~~----~~~~~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~L~~~~~~~~----~~~~~~~-~~~L~~ 327 (413)
+.+.. +..+..++ +|++|++++|.+.+..+..+ ... ++|+.|++++|.+++. ++..+.. .++|++
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 86433 34445555 99999999999876555433 445 5999999999999853 3444544 569999
Q ss_pred EECCCCcCcceec--hhHhhhcccCCCeeeccCccccccceeee-cccccc-ccccceeeeccCCCCC
Q 048333 328 LDMAQNSYGGTVE--LDVLLTSWKNLEALDISLNRSSVLTKATF-DATTDT-TSQKIQYRGLRSCNLT 391 (413)
Q Consensus 328 L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~-~~~~~~-~~~~L~~L~l~~~~l~ 391 (413)
|++++|.+.+... +...+..+++|++|++++|.+..+.+... ...... .+++|++|++++|.+.
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 9999999875432 12245778999999999998665544322 222223 6788999999999987
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4.4e-21 Score=174.10 Aligned_cols=205 Identities=19% Similarity=0.136 Sum_probs=103.4
Q ss_pred CCCccEEECCCCccccccccccccccccccc--cCCCCccEEeCCCCcCCCcch----hhhhCCCCCCEEEccCCcCccc
Q 048333 169 LSKLLHLDLSLNELQGEAASFRCFGELPISM--GNLGSLKELDLSQNGFFGELP----TSIRNLFSLEKLDLSFNKLSGE 242 (413)
Q Consensus 169 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~ 242 (413)
+++|++|++++|.+.+. .|..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+...
T Consensus 90 ~~~L~~L~l~~n~l~~~---------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 90 YSRLKELTLEDLKITGT---------MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp HSCCCEEEEESCCCBSC---------CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC
T ss_pred cCceeEEEeeCCEeccc---------hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh
Confidence 34577777777766543 33333 556666777776666654322 2233455666666666655544
Q ss_pred CCcccCCCCCCcEEEecCCccccc--c--chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccc-
Q 048333 243 FPWSTGNFSSLKLLNLRSCGFWSK--V--PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS- 317 (413)
Q Consensus 243 ~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~- 317 (413)
.+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.+.. .+. .+.
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~---------------------~~~~ 218 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG---------------------VCAA 218 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH---------------------HHHH
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH---------------------HHHH
Confidence 445555555566666655554221 1 1112344445555555444431 111 011
Q ss_pred cccCCCCCCEEECCCCcCcceechh-HhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchH
Q 048333 318 SLRNLTQLVVLDMAQNSYGGTVELD-VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF 396 (413)
Q Consensus 318 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 396 (413)
.+..+++|++|++++|.+.+..+.. ..+..+++|++|++++|.++.++... .++|++|++++|+++.+|.
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--------~~~L~~L~Ls~N~l~~~~~- 289 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--------PAKLRVLDLSSNRLNRAPQ- 289 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--------CSCCSCEECCSCCCCSCCC-
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--------cCCCCEEECCCCcCCCCch-
Confidence 1234455555555555554432200 01112246666666666654332211 1456666666666665554
Q ss_pred hhcCCCCcEEeCCCCCC
Q 048333 397 LENQNHLVILNLSDNRI 413 (413)
Q Consensus 397 ~~~l~~L~~L~l~~n~i 413 (413)
+..+++|+.|++++|+|
T Consensus 290 ~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCSCEECSSTTT
T ss_pred hhhCCCccEEECcCCCC
Confidence 45667777777777664
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=3.6e-19 Score=161.18 Aligned_cols=195 Identities=21% Similarity=0.231 Sum_probs=131.9
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (413)
....+++|++|+++++.+... + .+..+++|++|++++|.+.+.. . +..+++|++|+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l--~------------------~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTI--E------------------GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELS 93 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCC--T------------------TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECC
T ss_pred cHHHcCCcCEEEeeCCCccCc--h------------------hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEcc
Confidence 455677777777777766532 1 2556778888888888776433 3 7777888888888
Q ss_pred CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333 144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223 (413)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 223 (413)
+|.+.. + ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+... +. +
T Consensus 94 ~n~l~~------------~-~~~~~l~~L~~L~l~~n~l~~~----------~-~l~~l~~L~~L~l~~n~l~~~-~~-l 147 (308)
T 1h6u_A 94 GNPLKN------------V-SAIAGLQSIKTLDLTSTQITDV----------T-PLAGLSNLQVLYLDLNQITNI-SP-L 147 (308)
T ss_dssp SCCCSC------------C-GGGTTCTTCCEEECTTSCCCCC----------G-GGTTCTTCCEEECCSSCCCCC-GG-G
T ss_pred CCcCCC------------c-hhhcCCCCCCEEECCCCCCCCc----------h-hhcCCCCCCEEECCCCccCcC-cc-c
Confidence 887652 2 2466777888888888877643 2 266777788888887777533 22 6
Q ss_pred hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303 (413)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 303 (413)
..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.
T Consensus 148 ~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence 6777777777777776632 22 6677777777777777643322 666777777777777776433 3666777777
Q ss_pred EEccCCccc
Q 048333 304 IYIAKCNFS 312 (413)
Q Consensus 304 L~L~~~~~~ 312 (413)
|++++|.++
T Consensus 222 L~l~~N~i~ 230 (308)
T 1h6u_A 222 VTLTNQTIT 230 (308)
T ss_dssp EEEEEEEEE
T ss_pred EEccCCeee
Confidence 777777765
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.5e-19 Score=163.77 Aligned_cols=195 Identities=21% Similarity=0.320 Sum_probs=139.2
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~------------~~~-~~~l~~L~~L~L~~n~l~~~- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD------------LAP-LKNLTKITELELSGNPLKNV- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCCSCCEEECCSCCCSCC-
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC------------Chh-HccCCCCCEEEccCCcCCCc-
Confidence 4467888999998888864 44 47788889999999888763 333 77888889999988887743
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK 266 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 266 (413)
..+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+.
T Consensus 101 ----------~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 101 ----------SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp ----------GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred ----------hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 256778888888888888764 333 7778888888888887764322 66777778888877776432
Q ss_pred cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
+. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+.+
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -hh-hcCCCCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 22 667777777777777776432 2566777777777777776433 25667777777777777653
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=168.59 Aligned_cols=204 Identities=20% Similarity=0.165 Sum_probs=125.9
Q ss_pred CCCcEEEccCCcccccchhhhhhcccCCCccc--cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333 135 SSLTFVSLRNCELQAMCSFFLIQISGRIPSSL--GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ 212 (413)
Q Consensus 135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (413)
++|++|++++|.+. +..|..+ ..+++|+.|++++|.++...+.+ -...+..+++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~-----------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-----~~~~~~~~~~L~~L~Ls~ 154 (310)
T 4glp_A 91 SRLKELTLEDLKIT-----------GTMPPLPLEATGLALSSLRLRNVSWATGRSWL-----AELQQWLKPGLKVLSIAQ 154 (310)
T ss_dssp SCCCEEEEESCCCB-----------SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-----HHHHTTBCSCCCEEEEEC
T ss_pred CceeEEEeeCCEec-----------cchhhhhhhccCCCCCEEEeecccccchhhhh-----HHHHhhhccCCCEEEeeC
Confidence 44555555555554 2334444 45555555555555555321100 001223456666666666
Q ss_pred CcCCCcchhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCCccccccch----hhccCCCCCeEecCC
Q 048333 213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSCGFWSKVPH----SIGNFTRLQFLFLGF 284 (413)
Q Consensus 213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~ 284 (413)
|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. ..+. .+..+++|++|++++
T Consensus 155 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 155 AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence 666555555666666677777766664321 1222356677888888888773 2222 246778888899988
Q ss_pred cccCCcccccccCC---CCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333 285 NNFSGDLLGSIGNL---RSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361 (413)
Q Consensus 285 ~~~~~~~~~~l~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i 361 (413)
|.+.+..+..+..+ ++|+.|++++|.++ .+|..+. ++|+.|++++|.+.+. + .+..+++|+.|++++|++
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~---~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P---QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C---CTTSCCCCSCEECSSTTT
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c---hhhhCCCccEEECcCCCC
Confidence 88876555555554 68888888888887 5555543 7888888888888753 2 245678888888888885
Q ss_pred c
Q 048333 362 S 362 (413)
Q Consensus 362 ~ 362 (413)
+
T Consensus 307 ~ 307 (310)
T 4glp_A 307 L 307 (310)
T ss_dssp S
T ss_pred C
Confidence 4
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.1e-19 Score=158.59 Aligned_cols=196 Identities=16% Similarity=0.204 Sum_probs=130.4
Q ss_pred CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCc-CcccCCcccCCCCCCcEEEecC-CccccccchhhccCCCCCeEe
Q 048333 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK-LSGEFPWSTGNFSSLKLLNLRS-CGFWSKVPHSIGNFTRLQFLF 281 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 281 (413)
++++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++ +.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56677777776654444456667777777777775 5544444566677777777776 666544445667777777777
Q ss_pred cCCcccCCcccccccCCCCCc---EEEccCC-cccccccccccCCCCCC-EEECCCCcCcceechhHhhhcccCCCeeec
Q 048333 282 LGFNNFSGDLLGSIGNLRSLE---VIYIAKC-NFSGQITSSLRNLTQLV-VLDMAQNSYGGTVELDVLLTSWKNLEALDI 356 (413)
Q Consensus 282 l~~~~~~~~~~~~l~~~~~L~---~L~L~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 356 (413)
+++|.+.. .+. +..+++|+ .|++++| .+++..+..+..+++|+ .|++++|.+. .++.. .+.. ++|++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~-~~~~-~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY-AFNG-TKLDAVYL 186 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT-TTTT-CEEEEEEC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh-hcCC-CCCCEEEc
Confidence 77777764 333 66666776 8888887 77655555677778888 8888888776 44422 4444 67888888
Q ss_pred cCcc-ccccceeeecccccccc-ccceeeeccCCCCCCcchHhhcCCCCcEEeCCCC
Q 048333 357 SLNR-SSVLTKATFDATTDTTS-QKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN 411 (413)
Q Consensus 357 ~~~~-i~~l~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 411 (413)
++|+ ++.++...+. .+ ++|++|++++|.++.+|.. .+++|+.|++.++
T Consensus 187 ~~n~~l~~i~~~~~~-----~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFG-----GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTT-----TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhh-----ccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 8884 5543322111 34 6788888888888877764 6788888888776
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=7.6e-19 Score=154.29 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=135.2
Q ss_pred CCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCc
Q 048333 135 SSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG 214 (413)
Q Consensus 135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 214 (413)
...++++++++.++ .+|..+. ++++.|++++|.++.. .+..+..+++|++|++++|.
T Consensus 14 ~~~~~l~~~~~~l~------------~~p~~~~--~~l~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLD------------SVPSGIP--ADTEKLDLQSTGLATL---------SDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGGTEEECTTCCCS------------SCCSCCC--TTCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECTTSC
T ss_pred CCCeEEecCCCCcc------------ccCCCCC--CCCCEEEccCCCcCcc---------CHhHhcCcccCCEEECCCCc
Confidence 44677888877764 6666554 5788888888887754 33457778888888888888
Q ss_pred CCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccccc
Q 048333 215 FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGS 294 (413)
Q Consensus 215 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 294 (413)
+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 87666667778888888888888887666666777888888888888776555555677888888888888877655556
Q ss_pred ccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce
Q 048333 295 IGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT 338 (413)
Q Consensus 295 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 338 (413)
+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77778888888888888766666777788888888888877644
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1.8e-18 Score=151.98 Aligned_cols=180 Identities=24% Similarity=0.244 Sum_probs=142.0
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
...++++++++.+. .+|..+. +++++|++++|.+. +..+..+.++++|++|++++|.++..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~----- 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-----------TLSDATFRGLTKLTWLNLDYNQLQTL----- 74 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECTTSCCCCC-----
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-----------ccCHhHhcCcccCCEEECCCCcCCcc-----
Confidence 46778888888886 4565443 67889999988887 34456678888999999999888754
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
.+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..
T Consensus 75 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 75 ----SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 3455778888999999988887666677788888999999988887656666778888999999888886555556
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccc
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 313 (413)
+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8888889999999988886666677888889999998888864
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2.3e-19 Score=156.43 Aligned_cols=200 Identities=19% Similarity=0.203 Sum_probs=105.3
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCc-ccccchhhhhhcccCCCccccCCCCccEEECCC-Ccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCE-LQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL-NELQGEAAS 188 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~ 188 (413)
++|++|++++|.+++..+..+..+++|++|++++|. ++. ..+..+.++++|++|++++ |.++..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-----------i~~~~f~~l~~L~~L~l~~~n~l~~i--- 96 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-----------LESHSFYNLSKVTHIEIRNTRNLTYI--- 96 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-----------ECTTTEESCTTCCEEEEEEETTCCEE---
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-----------eCHhHcCCCcCCcEEECCCCCCeeEc---
Confidence 367777777777765555566777777777777775 542 1223556667777777766 666532
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC-cccccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC-GFWSKV 267 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~ 267 (413)
.+..+..+++|++|++++|.+.. +|. +..+++|+ .|+.|++++| .+....
T Consensus 97 ------~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 97 ------DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIP 147 (239)
T ss_dssp ------CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEEC
T ss_pred ------CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcC
Confidence 12345556666666666665542 333 44444444 0014444444 443333
Q ss_pred chhhccCCCCC-eEecCCcccCCcccccccCCCCCcEEEccCCc-ccccccccccCC-CCCCEEECCCCcCcceechhHh
Q 048333 268 PHSIGNFTRLQ-FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNL-TQLVVLDMAQNSYGGTVELDVL 344 (413)
Q Consensus 268 ~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~ 344 (413)
+..|..+++|+ .|++++|.+.......+.. ++|+.|++++|. +++..+..+..+ ++|+.|++++|.+.+...
T Consensus 148 ~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~---- 222 (239)
T 2xwt_C 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS---- 222 (239)
T ss_dssp TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC----
T ss_pred cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh----
Confidence 33344455555 5555555544222222222 455566665553 543334445555 566666666665553222
Q ss_pred hhcccCCCeeeccCc
Q 048333 345 LTSWKNLEALDISLN 359 (413)
Q Consensus 345 ~~~~~~L~~L~l~~~ 359 (413)
..+++|+.|+++++
T Consensus 223 -~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 -KGLEHLKELIARNT 236 (239)
T ss_dssp -TTCTTCSEEECTTC
T ss_pred -hHhccCceeeccCc
Confidence 14555666666554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=8.2e-18 Score=155.17 Aligned_cols=163 Identities=23% Similarity=0.159 Sum_probs=71.0
Q ss_pred CcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCc-ccCCcccccccCC-CCCcEEEccCCccccc
Q 048333 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN-NFSGDLLGSIGNL-RSLEVIYIAKCNFSGQ 314 (413)
Q Consensus 237 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~ 314 (413)
|.+....+..+..+++|++|++++|.+....+..+....++..+++.++ .+.......+..+ ..++.|++++|+++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 3333333334444444444444444443322223333334444444332 2222222223332 24555556555555 2
Q ss_pred ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCC-CCCCc
Q 048333 315 ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC-NLTKF 393 (413)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l 393 (413)
++.......+|+.+++.++...+.++.. .+.++++|++|++++|.++.++... +..|+.|.+.++ .+..+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~~lp~~~--------~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIHSLPSYG--------LENLKKLRARSTYNLKKL 239 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCCCCCSSS--------CTTCCEEECTTCTTCCCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcCccChhh--------hccchHhhhccCCCcCcC
Confidence 3333333445566666543333333312 4555666666666666655443221 223444444333 23355
Q ss_pred chHhhcCCCCcEEeCCC
Q 048333 394 PNFLENQNHLVILNLSD 410 (413)
Q Consensus 394 ~~~~~~l~~L~~L~l~~ 410 (413)
|. +.++++|+.+++.+
T Consensus 240 P~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PT-LEKLVALMEASLTY 255 (350)
T ss_dssp CC-TTTCCSCCEEECSC
T ss_pred CC-chhCcChhhCcCCC
Confidence 52 45566666666543
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1e-16 Score=143.71 Aligned_cols=106 Identities=27% Similarity=0.380 Sum_probs=46.5
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 278 (413)
+..+++|++|++++|.+.. + ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 3344444444444444432 1 2234444444444444444322 233444444555554444432222 44445555
Q ss_pred eEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
.|++++|.+.+. ..+..+++|+.|++++|.++
T Consensus 182 ~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 182 NLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred EEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence 555555544421 22444555555555555544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6.9e-17 Score=144.85 Aligned_cols=170 Identities=24% Similarity=0.296 Sum_probs=104.1
Q ss_pred CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333 133 NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ 212 (413)
Q Consensus 133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (413)
.+++|++|++++|.+.. + ..+..+++|+.|++++|.+++. +. +..+++|+.|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~------------~-~~~~~l~~L~~L~L~~n~l~~~----------~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS------------V-QGIQYLPNVTKLFLNGNKLTDI----------KP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHTCCEEECTTSCCCC------------C-TTGGGCTTCCEEECCSSCCCCC----------GG-GTTCTTCCEEECCS
T ss_pred hcCcccEEEccCCCccc------------C-hhHhcCCCCCEEEccCCccCCC----------cc-cccCCCCCEEECCC
Confidence 44555555555555442 1 1244555666666666655532 22 55556666666666
Q ss_pred CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccc
Q 048333 213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL 292 (413)
Q Consensus 213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (413)
|.+.. + ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 66542 2 2366777777777777776532 3456667777777777776433 456677777777777777764332
Q ss_pred ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333 293 GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 293 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 6667777777777777763 33 3666777777777777665
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.1e-16 Score=136.39 Aligned_cols=179 Identities=22% Similarity=0.198 Sum_probs=94.8
Q ss_pred cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193 (413)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 193 (413)
+.++.+++.+. .+|..+ .++|++|++++|.+.. ..+..+..+++|++|++++|.++..
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~-------- 67 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKS-----------LPNGVFDELTSLTQLYLGGNKLQSL-------- 67 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCC--------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCc-----------CChhhhcccccCcEEECCCCccCcc--------
Confidence 34455555544 233222 3456666666666542 2223345566666666666665532
Q ss_pred cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhcc
Q 048333 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN 273 (413)
Q Consensus 194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus 68 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 68 -PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 1223455566666666666655443444555666666666666555444444555566666666666554433344555
Q ss_pred CCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCC
Q 048333 274 FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322 (413)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 322 (413)
+++|++|++++|.+. +.++.|+.|.++.|.+++.+|..+..+
T Consensus 147 l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 566666666665443 234455566666666655555544433
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1e-16 Score=157.43 Aligned_cols=175 Identities=23% Similarity=0.269 Sum_probs=122.3
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (413)
.+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l--~------------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSV--Q------------------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCC--T------------------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred chhcCCCCCEEECcCCCCCCC--h------------------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 355677777777777765532 1 25567888888888887765433 7778888888888
Q ss_pred CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333 144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223 (413)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 223 (413)
+|.+.. + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+... ..+
T Consensus 96 ~N~l~~------------l-~~l~~l~~L~~L~Ls~N~l~~l-----------~~l~~l~~L~~L~Ls~N~l~~l--~~l 149 (605)
T 1m9s_A 96 ENKIKD------------L-SSLKDLKKLKSLSLEHNGISDI-----------NGLVHLPQLESLYLGNNKITDI--TVL 149 (605)
T ss_dssp SSCCCC------------C-TTSTTCTTCCEEECTTSCCCCC-----------GGGGGCTTCSEEECCSSCCCCC--GGG
T ss_pred CCCCCC------------C-hhhccCCCCCEEEecCCCCCCC-----------ccccCCCccCEEECCCCccCCc--hhh
Confidence 887752 2 2567778888888888877642 3466777888888888877643 557
Q ss_pred hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCc
Q 048333 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290 (413)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 290 (413)
..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+...
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 777888888888887764444 6777788888888877744 2 3467777888888887776643
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=4.4e-17 Score=158.28 Aligned_cols=206 Identities=23% Similarity=0.276 Sum_probs=140.8
Q ss_pred CCCCCCCCCCCCCc-----ccceE-EeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCcccc
Q 048333 18 MASWKPEEGSVDCY-----SWDVV-HCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII 91 (413)
Q Consensus 18 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 91 (413)
+..|.. ..+.| .|.++ .|.. ++++.|+++++.+.+ ++. .+ +++|++|++++|.+.. +|
T Consensus 33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---- 96 (571)
T 3cvr_A 33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---- 96 (571)
T ss_dssp HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC----
T ss_pred HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc----
Confidence 455755 44555 68888 6752 589999999998875 444 34 3789999999998873 33
Q ss_pred CcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCC
Q 048333 92 NLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSK 171 (413)
Q Consensus 92 ~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 171 (413)
..+++|++|++++|.+++ +|. +.. +|++|++++|.++ .+|. .+++
T Consensus 97 ----------------~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~------------~lp~---~l~~ 141 (571)
T 3cvr_A 97 ----------------ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT------------MLPE---LPAL 141 (571)
T ss_dssp ----------------CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS------------CCCC---CCTT
T ss_pred ----------------cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC------------CCCC---cCcc
Confidence 126788888888888875 665 544 8888888888876 2444 5678
Q ss_pred ccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCC
Q 048333 172 LLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS 251 (413)
Q Consensus 172 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 251 (413)
|+.|++++|.++. +|. .+++|+.|++++|.+.. +|. +. ++|+.|++++|.++ .+|. +..
T Consensus 142 L~~L~Ls~N~l~~----------lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-- 200 (571)
T 3cvr_A 142 LEYINADNNQLTM----------LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-- 200 (571)
T ss_dssp CCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred ccEEeCCCCccCc----------CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence 8888888888774 333 45778888888888764 555 44 77888888888776 4454 332
Q ss_pred CC-------cEEEecCCccccccchhhccCCCCCeEecCCcccCCccccccc
Q 048333 252 SL-------KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296 (413)
Q Consensus 252 ~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 296 (413)
+| +.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 55 77777777663 4555555677777777777766654444443
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.6e-16 Score=133.98 Aligned_cols=149 Identities=21% Similarity=0.181 Sum_probs=90.9
Q ss_pred CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35666666666655444444556666666666666665444444556666666666666664444444566666777777
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~ 360 (413)
++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+. ..++.|++|+++.|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINK 176 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHH
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------cCCCCHHHHHHHHHh
Confidence 766666544445566677777777777766544455666777777777777544 234566777777666
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.7e-17 Score=135.96 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=93.6
Q ss_pred CCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEE
Q 048333 250 FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329 (413)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 329 (413)
+++|+.|+++++.+. .++ .+..+++|++|++++|.+.. +..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 445556666655553 333 35556666666666665442 23556667777777777777655566666777777777
Q ss_pred CCCCcCcceechhHhhhcccCCCeeeccCcc-ccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeC
Q 048333 330 MAQNSYGGTVELDVLLTSWKNLEALDISLNR-SSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNL 408 (413)
Q Consensus 330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 408 (413)
+++|.+.+..+ . .+..+++|++|++++|. ++.++ ....+++|++|++++|.++.++ .+..+++|+.|++
T Consensus 119 Ls~n~i~~~~~-~-~l~~l~~L~~L~L~~n~~i~~~~-------~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 119 ISHSAHDDSIL-T-KINTLPKVNSIDLSYNGAITDIM-------PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp CCSSBCBGGGH-H-HHTTCSSCCEEECCSCTBCCCCG-------GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEE
T ss_pred ecCCccCcHhH-H-HHhhCCCCCEEEccCCCCccccH-------hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEe
Confidence 77777664333 2 56677777777777776 44432 1115667777777777777666 6677778888888
Q ss_pred CCCCC
Q 048333 409 SDNRI 413 (413)
Q Consensus 409 ~~n~i 413 (413)
++|+|
T Consensus 189 ~~N~i 193 (197)
T 4ezg_A 189 FSQTI 193 (197)
T ss_dssp CBC--
T ss_pred eCccc
Confidence 77765
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.1e-17 Score=157.76 Aligned_cols=175 Identities=26% Similarity=0.342 Sum_probs=146.3
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+.+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~l~~l- 102 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD------------IKP-LTNLKNLGWLFLDENKIKDL- 102 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC------------CGG-GGGCTTCCEEECCSSCCCCC-
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC------------Chh-hccCCCCCEEECcCCCCCCC-
Confidence 4568999999999999874 44 48889999999999999873 333 78899999999999998743
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK 266 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 266 (413)
..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+.
T Consensus 103 ----------~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 103 ----------SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp ----------TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred ----------hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 367889999999999999874 3 4588999999999999998754 5678899999999999988655
Q ss_pred cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc
Q 048333 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI 315 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 315 (413)
.+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 45 88899999999999998753 46888999999999999887543
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=3.3e-16 Score=152.16 Aligned_cols=182 Identities=22% Similarity=0.289 Sum_probs=145.3
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 190 (413)
.+|++|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.++.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~------------~ip---~~l~~L~~L~Ls~N~l~~------ 114 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI------------SLP---ELPASLEYLDACDNRLST------ 114 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS------------CCC---CCCTTCCEEECCSSCCSC------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc------------ccc---cccCCCCEEEccCCCCCC------
Confidence 489999999999986 66655 488999999999986 345 446899999999999885
Q ss_pred ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270 (413)
Q Consensus 191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 270 (413)
+|. +.. +|+.|++++|.+.. +|. .+++|+.|++++|.++. +|. .+++|+.|++++|.+.+ +|.
T Consensus 115 ----ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 115 ----LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp ----CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred ----cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-
Confidence 344 433 89999999999875 555 67899999999999874 554 56899999999998855 555
Q ss_pred hccCCCCCeEecCCcccCCcccccccCCCCC-------cEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL-------EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 340 (413)
+. ++|+.|++++|.+. .++. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+.+..+
T Consensus 178 l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 54 89999999999988 4444 443 66 99999999998 577777779999999999999986555
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=2.2e-16 Score=145.53 Aligned_cols=221 Identities=17% Similarity=0.066 Sum_probs=122.5
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC-ccccCCCCccE-EECCCCcccccccc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP-SSLGNLSKLLH-LDLSLNELQGEAAS 188 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~-L~l~~~~i~~~~~~ 188 (413)
+++++|++++|.++...+.+|.++++|++|++++|.+.. .++ ..|.++++++. +.+.+|.++..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-----------~i~~~~f~~L~~l~~~l~~~~N~l~~l--- 95 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----------VIEADVFSNLPKLHEIRIEKANNLLYI--- 95 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----------EECTTSBCSCTTCCEEEEEEETTCCEE---
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----------ccChhHhhcchhhhhhhcccCCccccc---
Confidence 567777777777764444456777777777777776542 222 34556666554 34455666543
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCC-cCcccCCcccCCC-CCCcEEEecCCccccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSGEFPWSTGNF-SSLKLLNLRSCGFWSK 266 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~ 266 (413)
.|..+..+++|+.|++++|.+....+..+....++..+++.++ .+....+..+..+ ..++.|++++|.+. .
T Consensus 96 ------~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 96 ------NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp ------CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred ------CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 2345666777777777777665443334444555666666443 3332333334333 34666777777663 3
Q ss_pred cchhhccCCCCCeEecCC-cccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhh
Q 048333 267 VPHSIGNFTRLQFLFLGF-NNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 345 (413)
++.......+|+.+++.+ |.+......+|..+++|+.|++++|+++...+.. +.+|+.|.+.++......+ .+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP---~l 242 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP---TL 242 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC---CT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC---Cc
Confidence 333333445666776664 3444333345566677777777777766332222 3445555554443333444 35
Q ss_pred hcccCCCeeeccC
Q 048333 346 TSWKNLEALDISL 358 (413)
Q Consensus 346 ~~~~~L~~L~l~~ 358 (413)
..+++|+.+++++
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 5666677777654
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=4.8e-16 Score=134.28 Aligned_cols=158 Identities=25% Similarity=0.240 Sum_probs=107.1
Q ss_pred CCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh
Q 048333 27 SVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106 (413)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 106 (413)
....|.|.+|.|... .+. .++. .+ .++|++|++++|.+... . +..
T Consensus 15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~-----------------~~~ 59 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-E-----------------PGV 59 (229)
T ss_dssp TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-C-----------------TTT
T ss_pred CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-C-----------------HHH
Confidence 788999999999531 121 2222 22 27788888888877653 1 224
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+..+++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++.
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~~-- 126 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-----------LPSAVFDRLVHLKELFMCCNKLTE-- 126 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCS--
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-----------cChhHhCcchhhCeEeccCCcccc--
Confidence 5667888888888888865555667778888888888887762 233446677788888888887762
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS 240 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 240 (413)
+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 127 --------lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 127 --------LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp --------CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred --------cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 4556667777777777777776444455666667777777666554
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=4e-16 Score=131.54 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=36.6
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 278 (413)
+..+++|++|++++|.+. . +..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 334444444444444332 1 12344444444444444444333333344444444444444444333333444444444
Q ss_pred eEecCCcc
Q 048333 279 FLFLGFNN 286 (413)
Q Consensus 279 ~L~l~~~~ 286 (413)
+|++++|.
T Consensus 140 ~L~L~~n~ 147 (197)
T 4ezg_A 140 SIDLSYNG 147 (197)
T ss_dssp EEECCSCT
T ss_pred EEEccCCC
Confidence 44444443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=1.3e-15 Score=130.56 Aligned_cols=135 Identities=20% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 35556666666555333445555666666666666665455556666666666666666664444444566677777777
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7777665556666677777777777777765555566677777777777777654
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=1.4e-15 Score=140.81 Aligned_cols=178 Identities=23% Similarity=0.174 Sum_probs=133.9
Q ss_pred CcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccccc-CCCCccEEeCCCCcC
Q 048333 137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG-NLGSLKELDLSQNGF 215 (413)
Q Consensus 137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~ 215 (413)
-++++++++.++ .+|..+. +.++.|++++|.++.. .+..+. .+++|+.|++++|.+
T Consensus 20 ~~~l~c~~~~l~------------~iP~~~~--~~l~~L~Ls~N~l~~l---------~~~~~~~~l~~L~~L~L~~N~i 76 (361)
T 2xot_A 20 SNILSCSKQQLP------------NVPQSLP--SYTALLDLSHNNLSRL---------RAEWTPTRLTNLHSLLLSHNHL 76 (361)
T ss_dssp TTEEECCSSCCS------------SCCSSCC--TTCSEEECCSSCCCEE---------CTTSSSSCCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcC------------ccCccCC--CCCCEEECCCCCCCcc---------ChhhhhhcccccCEEECCCCcC
Confidence 367888888775 6776554 4688899999988754 233455 788899999999888
Q ss_pred CCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc
Q 048333 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI 295 (413)
Q Consensus 216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 295 (413)
....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 76666778888889999998888876666677888888888888888866667778888888888888888875444444
Q ss_pred ---cCCCCCcEEEccCCcccccccccccCCCC--CCEEECCCCcCcc
Q 048333 296 ---GNLRSLEVIYIAKCNFSGQITSSLRNLTQ--LVVLDMAQNSYGG 337 (413)
Q Consensus 296 ---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~ 337 (413)
..+++|+.|++++|.++...+..+..++. ++.|++++|.+..
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 45788888888888887555556666666 4778888887764
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=3e-15 Score=128.41 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=98.9
Q ss_pred CccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 204 SLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
.+++|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34566666666653322 34566777777777777766555556777777777777777776666666777888888888
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 340 (413)
++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.....
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8888776666777778888888888888876667778888888888888888775544
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=2.6e-15 Score=128.71 Aligned_cols=114 Identities=24% Similarity=0.226 Sum_probs=60.8
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 278 (413)
+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 44444455555555544433344455555555555555555433333344555555555555555444445555566666
Q ss_pred eEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
+|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666666655444445555666666666666554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.3e-15 Score=140.98 Aligned_cols=176 Identities=20% Similarity=0.146 Sum_probs=142.0
Q ss_pred cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcccc-CCCCccEEECCCCcccccccccccc
Q 048333 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG-NLSKLLHLDLSLNELQGEAASFRCF 192 (413)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~ 192 (413)
+.++.+++.+. .+|..+ .+.++.|++++|.++. ..+..+. ++++|+.|++++|.++..
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~-----------l~~~~~~~~l~~L~~L~L~~N~i~~i------- 79 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR-----------LRAEWTPTRLTNLHSLLLSHNHLNFI------- 79 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCE-----------ECTTSSSSCCTTCCEEECCSSCCCEE-------
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCc-----------cChhhhhhcccccCEEECCCCcCCcc-------
Confidence 68899999887 466544 3569999999999874 2344565 889999999999999864
Q ss_pred ccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhh-
Q 048333 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSI- 271 (413)
Q Consensus 193 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~- 271 (413)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+
T Consensus 80 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 80 --SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred --ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 33568889999999999999986666678999999999999999987778889999999999999999855444444
Q ss_pred --ccCCCCCeEecCCcccCCcccccccCCCC--CcEEEccCCccc
Q 048333 272 --GNFTRLQFLFLGFNNFSGDLLGSIGNLRS--LEVIYIAKCNFS 312 (413)
Q Consensus 272 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~~~~~ 312 (413)
..+++|+.|++++|.+.......+..++. ++.|++.+|.+.
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 56899999999999998655566777776 488999999886
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=6.6e-15 Score=127.09 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=87.2
Q ss_pred CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55666666666666555556666666666666666665444444566666777777766665444455666677777777
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
++|.+. .++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777766 445556667777777777777765445566677777777777777654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=5.9e-15 Score=126.55 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=80.5
Q ss_pred cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193 (413)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 193 (413)
++++++++.++ .+|..+ .+.+++|++++|.++.+ ..+..+..+++|+.|++++|.++..
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~i~~i-------- 72 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVL----------EATGIFKKLPQLRKINFSNNKITDI-------- 72 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEE----------CCCCCGGGCTTCCEEECCSSCCCEE--------
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCcc----------CchhhhccCCCCCEEECCCCcCCEE--------
Confidence 46666666665 344433 23456666666665521 0112345566666666666666533
Q ss_pred cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhcc
Q 048333 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN 273 (413)
Q Consensus 194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 273 (413)
.+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..
T Consensus 73 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 73 -EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred -CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 2234555566666666666665444445555555666665555555444445555555555555555554444444444
Q ss_pred CCCCCeEecCCccc
Q 048333 274 FTRLQFLFLGFNNF 287 (413)
Q Consensus 274 ~~~L~~L~l~~~~~ 287 (413)
+++|+.|++++|.+
T Consensus 152 l~~L~~L~L~~N~l 165 (220)
T 2v70_A 152 LHSLSTLNLLANPF 165 (220)
T ss_dssp CTTCCEEECCSCCE
T ss_pred CCCCCEEEecCcCC
Confidence 55555555555444
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=2.7e-15 Score=132.35 Aligned_cols=148 Identities=22% Similarity=0.291 Sum_probs=69.3
Q ss_pred hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA 187 (413)
Q Consensus 108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 187 (413)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+++.
T Consensus 38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~------------~~~-l~~l~~L~~L~L~~N~l~~l-- 100 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD------------LSP-LKDLTKLEELSVNRNRLKNL-- 100 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCSSCCEEECCSSCCSCC--
T ss_pred hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC------------Chh-hccCCCCCEEECCCCccCCc--
Confidence 344555555555554442 22 34445555555555554441 112 44455555555555554432
Q ss_pred cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc
Q 048333 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV 267 (413)
Q Consensus 188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 267 (413)
+. +.. ++|+.|++++|.+.. + ..+..+++|+.|++++|.++.. + .+..+++|+.|++++|.+.+.
T Consensus 101 --------~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 101 --------NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp --------TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred --------Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 11 111 445555555555432 2 2344555555555555554422 2 344455555555555555332
Q ss_pred chhhccCCCCCeEecCCcccC
Q 048333 268 PHSIGNFTRLQFLFLGFNNFS 288 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~ 288 (413)
..+..+++|+.|++++|.+.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCccc
Confidence 33455555555555555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.6e-15 Score=132.46 Aligned_cols=171 Identities=24% Similarity=0.305 Sum_probs=128.9
Q ss_pred cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
.+.++..++++++.+++ ++ .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+++.
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~------------l~-~l~~l~~L~~L~L~~N~i~~~--- 78 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS------------LA-GMQFFTNLKELHLSHNQISDL--- 78 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC------------CT-TGGGCTTCCEEECCSSCCCCC---
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc------------ch-HHhhCCCCCEEECCCCccCCC---
Confidence 35567777888888764 33 47788999999999998863 33 577889999999999988853
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP 268 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 268 (413)
+. +..+++|+.|++++|.+.. ++. +.. ++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+. +
T Consensus 79 -------~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~ 144 (263)
T 1xeu_A 79 -------SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V 144 (263)
T ss_dssp -------GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G
T ss_pred -------hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h
Confidence 33 7788899999999998864 333 223 788888888888764 2 3477788888888888887443 3
Q ss_pred hhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccc
Q 048333 269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ 314 (413)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 314 (413)
.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++..
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 577788888888888888754 5677788888888888877643
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.1e-16 Score=156.09 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=62.9
Q ss_pred ccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCC
Q 048333 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF 284 (413)
Q Consensus 205 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (413)
|+.|++++|.+.. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555555542 333 455555555555555554 444455555555555555555533 33 455555666666666
Q ss_pred cccCCcc-cccccCCCCCcEEEccCCcccccccc---cccCCCCCCEEE
Q 048333 285 NNFSGDL-LGSIGNLRSLEVIYIAKCNFSGQITS---SLRNLTQLVVLD 329 (413)
Q Consensus 285 ~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~ 329 (413)
|.+.+.. +..+..+++|+.|++++|.+++..+. .+..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6555433 55555566666666666665533221 222356666664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=4.7e-18 Score=165.91 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=89.1
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307 (413)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (413)
.|+.|++++|.++. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.. ++ .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57888888887764 555 777788888888888774 667777788888888888887774 34 67777888888888
Q ss_pred CCcccccc-cccccCCCCCCEEECCCCcCcceech-hHhhhcccCCCeeec
Q 048333 308 KCNFSGQI-TSSLRNLTQLVVLDMAQNSYGGTVEL-DVLLTSWKNLEALDI 356 (413)
Q Consensus 308 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l 356 (413)
+|.+++.. |..+..+++|+.|++++|.+.+..+. ...+..+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88877554 77777788888888888877654431 123455777777753
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1e-14 Score=133.21 Aligned_cols=287 Identities=11% Similarity=0.058 Sum_probs=172.0
Q ss_pred CceEEEecCCCccccccCCcccccc-ccccceeeccccCCCCCC-CCccccCcCccccCCcchhh-hhhc--------CC
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFK-LVHLKWLNLALNDFNSSE-IPPEIINLSRLELQKPSFEN-LFEK--------LS 111 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~--------~~ 111 (413)
.++++|.+++.- ...... .+.. +++|+.||+++|++.... ....+..+..+.+..+.++. +|.+ ++
T Consensus 25 ~~l~~L~l~g~i-~~~~~~--~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 25 NSITHLTLTGKL-NAEDFR--HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHCSEEEEEEEE-CHHHHH--HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred CceeEEEEeccc-cHHHHH--HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 467778777642 111111 3333 788999999999887211 11122222333444455543 4677 99
Q ss_pred CCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc
Q 048333 112 NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC 191 (413)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 191 (413)
+|++|++.+ .+....+.+|.+|++|+++++.++.+..+ .+..|.++.++..+.............
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-----------~~~aF~~~~~l~~l~~~~~~~~~~~~~--- 166 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-----------LPEALADSVTAIFIPLGSSDAYRFKNR--- 166 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-----------CTTSSCTTTCEEEECTTCTHHHHTSTT---
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-----------chhhhcCCCceEEecCcchhhhhcccc---
Confidence 999999988 77656667788999999999999887643 335566777777776655322100000
Q ss_pred cccccccccCCCCcc-EEeCCCCcCCCcchhhhh----CCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333 192 FGELPISMGNLGSLK-ELDLSQNGFFGELPTSIR----NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK 266 (413)
Q Consensus 192 ~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 266 (413)
.-...+..+..|+ .+.+.... .++..+. ...+++.+.+.+.-...........+++|+.+++++|.+...
T Consensus 167 --i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 167 --WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp --TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred --ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 0112344555665 34443321 1222111 234455555544322111111111357788888887777555
Q ss_pred cchhhccCCCCCeEecCCcccCCcccccccCCCCCc-EEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhh
Q 048333 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE-VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345 (413)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 345 (413)
....|..+.+|+.+++..+ +......+|..+++|+ .+.+.+ .++...+.+|.+|++|+.+++++|.+..... . +|
T Consensus 242 ~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~-~-aF 317 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD-E-LF 317 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT-T-TT
T ss_pred cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch-h-hh
Confidence 5566788888888888776 5555666777888888 888877 6654556778888888888888777764333 3 77
Q ss_pred hcccCCCeeec
Q 048333 346 TSWKNLEALDI 356 (413)
Q Consensus 346 ~~~~~L~~L~l 356 (413)
.+|++|+.++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 88888887763
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.4e-15 Score=151.28 Aligned_cols=210 Identities=24% Similarity=0.196 Sum_probs=91.8
Q ss_pred CCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh
Q 048333 27 SVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106 (413)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 106 (413)
......|.+..+ ..++++.|+|.++.+... +. .+ |+.++++.+.+........ . ....+..
T Consensus 159 ~~~~~~~~~~~~--s~~~~~~l~L~~n~~~~~-~~--~~-----l~~l~Ls~~~i~~~~~~~n--~-------~~~~~~~ 219 (727)
T 4b8c_D 159 STPSGTATNSAV--STPLTPKIELFANGKDEA-NQ--AL-----LQHKKLSQYSIDEDDDIEN--R-------MVMPKDS 219 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccCCCcee--cCCccceEEeeCCCCCcc-hh--hH-----hhcCccCcccccCcccccc--c-------eecChhh
Confidence 344455655544 346788899988876542 21 22 3444555544433211000 0 0112445
Q ss_pred hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA 186 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 186 (413)
+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|+.|++++|.++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~Ls~N~l~--- 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT------------ELPAEIKNLSNLRVLDLSHNRLT--- 283 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS------------CCCGGGGGGTTCCEEECTTSCCS---
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc------------ccChhhhCCCCCCEEeCcCCcCC---
Confidence 667788888888888876 56666667788888888888775 45666777778888888888776
Q ss_pred ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEEecCCcccc
Q 048333 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS-SLKLLNLRSCGFWS 265 (413)
Q Consensus 187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 265 (413)
.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+.... ....+++++|.+.+
T Consensus 284 -------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 284 -------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp -------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred -------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 25666777777777777777775 5666677777777777777777655554443221 11224455555544
Q ss_pred ccchhhccCCCCCeEecCCc
Q 048333 266 KVPHSIGNFTRLQFLFLGFN 285 (413)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~ 285 (413)
..|. .|..|+++.|
T Consensus 356 ~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 356 PLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCC------C---------
T ss_pred cCcc------ccceeEeecc
Confidence 4432 3445555544
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=4.7e-14 Score=115.59 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=37.0
Q ss_pred ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc-cccccCCCCCCEEECCCCcCcceech-hHhhhccc
Q 048333 272 GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI-TSSLRNLTQLVVLDMAQNSYGGTVEL-DVLLTSWK 349 (413)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~ 349 (413)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+.... ...+..++
T Consensus 68 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 33333444444444333222222333444444444444443211 13344444455555555544432211 01344555
Q ss_pred CCCeeeccCcccc
Q 048333 350 NLEALDISLNRSS 362 (413)
Q Consensus 350 ~L~~L~l~~~~i~ 362 (413)
+|++|++++|.+.
T Consensus 148 ~L~~L~l~~n~~~ 160 (168)
T 2ell_A 148 QLTYLDGYDREDQ 160 (168)
T ss_dssp SCCEETTEETTSC
T ss_pred cCcEecCCCCChh
Confidence 5555555555543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=7e-14 Score=114.52 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCccEEeCCCCcCC-CcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333 203 GSLKELDLSQNGFF-GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281 (413)
Q Consensus 203 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 281 (413)
++|++|++++|.+. ..+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666666554 34455555666666666666666533 4566677777777777777555666666678888888
Q ss_pred cCCcccCCcc-cccccCCCCCcEEEccCCccccccc---ccccCCCCCCEEECCCCcCcc
Q 048333 282 LGFNNFSGDL-LGSIGNLRSLEVIYIAKCNFSGQIT---SSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 282 l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~ 337 (413)
+++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888776532 2567777888888888888774433 367778888888888887653
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=1.1e-14 Score=146.35 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=85.6
Q ss_pred chhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCC
Q 048333 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL 298 (413)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 298 (413)
.+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455666677777777777665 45555556677777777777764 56666777777777777777776 456667777
Q ss_pred CCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcc-cCCCeeeccCcc
Q 048333 299 RSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW-KNLEALDISLNR 360 (413)
Q Consensus 299 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 360 (413)
++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+.+..+ . .+... ..+..+++++|.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p-~-~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL-K-ILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH-H-HHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh-H-HHhhcchhhhHHhhccCc
Confidence 77777777777775 556667777777777777777765544 2 22221 112235666666
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=3.2e-14 Score=129.96 Aligned_cols=126 Identities=12% Similarity=0.006 Sum_probs=93.8
Q ss_pred CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCC-EEE
Q 048333 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV-VLD 329 (413)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~-~L~ 329 (413)
.+++.+.+.+.-...........+++|+.+++++|.+......+|..+++|+.+++.++ ++.....+|..|++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 44555555543221111222234899999999999988777788999999999999987 6656678899999999 999
Q ss_pred CCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeec
Q 048333 330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGL 385 (413)
Q Consensus 330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l 385 (413)
+.+ .+. .++ ..+|.+|++|+.++++++.++.++...+. .+++|+.++.
T Consensus 281 l~~-~l~-~I~-~~aF~~c~~L~~l~l~~n~i~~I~~~aF~-----~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVT-AIE-FGAFMGCDNLRYVLATGDKITTLGDELFG-----NGVPSKLIYK 328 (329)
T ss_dssp ECT-TCC-EEC-TTTTTTCTTEEEEEECSSCCCEECTTTTC-----TTCCCCEEEC
T ss_pred Ecc-cce-EEc-hhhhhCCccCCEEEeCCCccCccchhhhc-----CCcchhhhcc
Confidence 988 554 444 33899999999999999998777655443 5677887763
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=4.3e-14 Score=113.32 Aligned_cols=109 Identities=28% Similarity=0.337 Sum_probs=65.5
Q ss_pred CCCCcEEEcCCccCC-CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333 110 LSNLKTLNLGDVSID-STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS 188 (413)
Q Consensus 110 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 188 (413)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~Ls~n~i~~~--- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------------I-ANLPKLNKLKKLELSDNRVSGG--- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC------------C-TTCCCCTTCCEEECCSSCCCSC---
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC------------c-hhhhcCCCCCEEECCCCcccch---
Confidence 467777777777776 5666666777777777777777652 2 4456666677777776666542
Q ss_pred ccccccccccccCCCCccEEeCCCCcCCCc-chhhhhCCCCCCEEEccCCcCc
Q 048333 189 FRCFGELPISMGNLGSLKELDLSQNGFFGE-LPTSIRNLFSLEKLDLSFNKLS 240 (413)
Q Consensus 189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 240 (413)
+|..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 80 ------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 80 ------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 333444455666666666655432 2244555555555555555444
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=7.8e-14 Score=111.79 Aligned_cols=83 Identities=22% Similarity=0.122 Sum_probs=34.0
Q ss_pred CccEEeCCCCcCC-CcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 204 SLKELDLSQNGFF-GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 204 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
+++.|++++|.+. ..+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444433 22333333444444444444443322 23334444444444444443333333334444444444
Q ss_pred CCcccC
Q 048333 283 GFNNFS 288 (413)
Q Consensus 283 ~~~~~~ 288 (413)
++|.+.
T Consensus 96 s~N~i~ 101 (149)
T 2je0_A 96 SGNKIK 101 (149)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 444443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2.2e-13 Score=114.06 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCCEEEccCCcCcccCCc-ccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333 228 SLEKLDLSFNKLSGEFPW-STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306 (413)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 306 (413)
+++.|++++|.+....+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444444322221 2444455555555555554444455555556666666666555444445566666777777
Q ss_pred cCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333 307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340 (413)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 340 (413)
++|++++..+..+..+++|++|++++|.+....+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7776665556666667777777777777665444
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=1e-12 Score=109.95 Aligned_cols=89 Identities=27% Similarity=0.297 Sum_probs=41.5
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 278 (413)
+..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44455555555555555444444455555555555555544433333344444444444444444333343444444444
Q ss_pred eEecCCccc
Q 048333 279 FLFLGFNNF 287 (413)
Q Consensus 279 ~L~l~~~~~ 287 (413)
+|++++|.+
T Consensus 130 ~L~L~~N~l 138 (192)
T 1w8a_A 130 SLNLASNPF 138 (192)
T ss_dssp EEECTTCCB
T ss_pred EEEeCCCCc
Confidence 444444433
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5.6e-12 Score=117.70 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=59.8
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 278 (413)
|.+|++|+.+++..+.+...-..++. +.+|+.+.+..+ +.......|..+++|+.+.+..+ +.......|.. .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 44444444444444444322222222 344444444422 22233334444444444444432 21222222333 3444
Q ss_pred eEecCCcccCCcccccccCCCCCcEEEccCCccc-----ccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCe
Q 048333 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS-----GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEA 353 (413)
Q Consensus 279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 353 (413)
.+.+. +.+......+|..+++|+.+.+.++... ......|..|++|+.+++.++ +. .+. ..+|.+|.+|+.
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~-~~aF~~c~~L~~ 327 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILG-QGLLGGNRKVTQ 327 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EEC-TTTTTTCCSCCE
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEh-hhhhcCCCCccE
Confidence 44442 2222233344444445555544443332 122334444555555555422 22 222 124444555555
Q ss_pred eecc
Q 048333 354 LDIS 357 (413)
Q Consensus 354 L~l~ 357 (413)
+++.
T Consensus 328 l~lp 331 (401)
T 4fdw_A 328 LTIP 331 (401)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5553
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5.9e-12 Score=117.53 Aligned_cols=247 Identities=11% Similarity=0.032 Sum_probs=173.0
Q ss_pred hhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccc
Q 048333 106 LFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE 185 (413)
Q Consensus 106 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 185 (413)
+|.++ +|+.+.+.++ +......+|.++ +|+.+.+.. .+.. .-...|.++++|+.+++.+|.++..
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-----------I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-----------LKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-----------ECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-----------ehHHHhhCcccCCeeecCCCcceEe
Confidence 45565 6888988765 544445567664 699998875 4442 2335688899999999998887754
Q ss_pred cccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265 (413)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 265 (413)
+.....+..|+.+.+..+ +...-..+|..+++|+.+.+..+ +.......|.. .+|+.+.+.. .+..
T Consensus 196 ----------~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 196 ----------PASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp ----------CTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred ----------chhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 322223688999999754 54445578889999999999875 33344455555 7899999954 4444
Q ss_pred ccchhhccCCCCCeEecCCcccC-----CcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333 266 KVPHSIGNFTRLQFLFLGFNNFS-----GDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340 (413)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 340 (413)
.....|..+++|+.+.+.++... .....+|..+++|+.+.+.+ .++.....+|.+|.+|+.+.+..+ +. .+.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEc
Confidence 55677899999999999887654 34566788899999999984 466556678889999999999665 43 344
Q ss_pred hhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333 341 LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL 390 (413)
Q Consensus 341 ~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 390 (413)
..+|.+| +|+.+++.+|.+..+....+.. ....++.+++..+.+
T Consensus 339 -~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~----~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 -FSAFNNT-GIKEVKVEGTTPPQVFEKVWYG----FPDDITVIRVPAESV 382 (401)
T ss_dssp -TTSSSSS-CCCEEEECCSSCCBCCCSSCCC----SCTTCCEEEECGGGH
T ss_pred -HHhCCCC-CCCEEEEcCCCCcccccccccC----CCCCccEEEeCHHHH
Confidence 3378888 9999999999866554333221 113566777665543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.9e-13 Score=111.71 Aligned_cols=111 Identities=20% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCE
Q 048333 248 GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVV 327 (413)
Q Consensus 248 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 327 (413)
..+.+|+.|++++|.+. .++......++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34556666666666553 2232222223666666666665532 44555566666666666655333333355566666
Q ss_pred EECCCCcCcceechhHhhhcccCCCeeeccCcccc
Q 048333 328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362 (413)
Q Consensus 328 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 362 (413)
|++++|.+.....+. .+..+++|+.|++++|++.
T Consensus 93 L~L~~N~i~~~~~~~-~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNNSLVELGDLD-PLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSCCCCCGGGGG-GGGGCTTCCEEECCSSGGG
T ss_pred EECCCCcCCcchhhH-hhhcCCCCCEEEecCCCCC
Confidence 666666554322211 3455555666666665543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=2.8e-12 Score=107.28 Aligned_cols=125 Identities=24% Similarity=0.241 Sum_probs=55.2
Q ss_pred cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193 (413)
Q Consensus 114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 193 (413)
++++++++.+. .+|..+ .++|++|++++|.++ .+|..+.++++|+.|++++|.++..
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~------------~ip~~~~~l~~L~~L~Ls~N~i~~i-------- 69 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT------------LVPKELSNYKHLTLIDLSNNRISTL-------- 69 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC------------SCCGGGGGCTTCCEEECCSSCCCCC--------
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc------------hhHHHhhcccCCCEEECCCCcCCEe--------
Confidence 34455555444 233322 234555555555443 2334444455555555555554432
Q ss_pred cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG 262 (413)
Q Consensus 194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 262 (413)
.+..+..+++|++|++++|.+....+.++..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 70 -~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 70 -SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 12234444445555555554443333344444444444444444443223333444444444444443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=4.5e-12 Score=106.06 Aligned_cols=108 Identities=24% Similarity=0.239 Sum_probs=48.1
Q ss_pred CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG 283 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (413)
++++|++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N---------------------- 88 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN---------------------- 88 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----------------------
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC----------------------
Confidence 4445555554443 33344444444444444444444333333334444444444444
Q ss_pred CcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333 284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 --~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 --RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp --CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred --ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 333333333444444444444444444333334444555555555555544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=4.4e-12 Score=104.66 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=61.8
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307 (413)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (413)
+|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44455555444443333334445555555555555543333344555666666666666654444445566666666666
Q ss_pred CCcccccccccccCCCCCCEEECCCCcCccee
Q 048333 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV 339 (413)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 339 (413)
+|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 66666444444556677777777777665433
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=7e-12 Score=103.44 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=62.8
Q ss_pred CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282 (413)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (413)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555554333344455556666666655555434444555666666666666654444444556666666666
Q ss_pred CCcccCCcccccccCCCCCcEEEccCCcccc
Q 048333 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313 (413)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 313 (413)
++|.+....+..+..+++|+.|++++|.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666654444445556666777776666653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=2.2e-12 Score=106.38 Aligned_cols=109 Identities=19% Similarity=0.101 Sum_probs=52.6
Q ss_pred cCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCe
Q 048333 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF 279 (413)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 279 (413)
..+.+|++|++++|.+. .++......++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34445555555555554 2222112222555565555555432 33455555666666665553332233355555555
Q ss_pred EecCCcccCCcccc--cccCCCCCcEEEccCCccc
Q 048333 280 LFLGFNNFSGDLLG--SIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 280 L~l~~~~~~~~~~~--~l~~~~~L~~L~L~~~~~~ 312 (413)
|++++|.+.+ .+. .+..+++|+.|++++|.++
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence 6555555542 222 3444555555555555544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=1.9e-14 Score=121.29 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=99.8
Q ss_pred hhcCCCCcEEEcCCccCCCCcCc------cccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC
Q 048333 107 FEKLSNLKTLNLGDVSIDSTIPH------NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN 180 (413)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 180 (413)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|.+. .+| .+..+++|+.|++++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~------------~l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE------------KIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES------------CCC-CHHHHTTCCEEEEEEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc------------ccc-ccccCCCCCEEECCCC
Confidence 44566777777777776665554 6777888888888888776 244 6677788888888888
Q ss_pred ccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEEec
Q 048333 181 ELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP-WSTGNFSSLKLLNLR 259 (413)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~ 259 (413)
.++. +|..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+....+ ..+..+++|++|+++
T Consensus 81 ~l~~----------l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 81 LIKK----------IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EECS----------CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred Cccc----------ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 7763 44455556778888888887763 44 46677778888887777653211 345667777777777
Q ss_pred CCccccccch----------hhccCCCCCeEe
Q 048333 260 SCGFWSKVPH----------SIGNFTRLQFLF 281 (413)
Q Consensus 260 ~~~~~~~~~~----------~~~~~~~L~~L~ 281 (413)
+|.+.+..+. .+..+++|+.|+
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7766443332 255566666665
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=8.5e-11 Score=109.93 Aligned_cols=146 Identities=11% Similarity=0.093 Sum_probs=76.0
Q ss_pred ccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCC
Q 048333 246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL 325 (413)
Q Consensus 246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L 325 (413)
.+..+..++.+.+..+.. ......|..+..++.+......+. ...+..+.+|+.+.+..+ ++.....+|..|.+|
T Consensus 248 ~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence 344445555555544321 222333455555555554443322 234455666777766543 332334566677777
Q ss_pred CEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcE
Q 048333 326 VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVI 405 (413)
Q Consensus 326 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 405 (413)
+.+++..+ +. .+. ..+|.+|.+|+.+++..+ ++.++...+. .|.+|+.+.+..+ +..+...+.+|++|+.
T Consensus 323 ~~i~lp~~-v~-~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 323 VSIDLPYL-VE-EIG-KRSFRGCTSLSNINFPLS-LRKIGANAFQ-----GCINLKKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CEECCCTT-CC-EEC-TTTTTTCTTCCEECCCTT-CCEECTTTBT-----TCTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CEEEeCCc-cc-EEh-HHhccCCCCCCEEEECcc-ccEehHHHhh-----CCCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence 77777543 32 333 236677777777777655 4444332221 4666777776543 3334455666666665
Q ss_pred E
Q 048333 406 L 406 (413)
Q Consensus 406 L 406 (413)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.9e-13 Score=124.27 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=123.4
Q ss_pred CCCCCEEEccCCcCccc----CCcccC-CCCCCcEEEecCCccccccchh-hccCCCCCeEecCCcccCCcccccc----
Q 048333 226 LFSLEKLDLSFNKLSGE----FPWSTG-NFSSLKLLNLRSCGFWSKVPHS-IGNFTRLQFLFLGFNNFSGDLLGSI---- 295 (413)
Q Consensus 226 ~~~L~~L~l~~~~~~~~----~~~~l~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l---- 295 (413)
++.|+.|++++|.++.. +...+. ..++|++|++++|.+.+..... ...+++|+.|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999988633 222233 3368999999999885443332 3446789999999999876544444
Q ss_pred -cCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCccee--chhHhhhcccCCCeeeccCccccccceee
Q 048333 296 -GNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTV--ELDVLLTSWKNLEALDISLNRSSVLTKAT 368 (413)
Q Consensus 296 -~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~ 368 (413)
...+.|+.|++++|.+++. ++..+..+++|++|++++|.+.+.. .+...+..+++|++|++++|.|+..+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~- 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL- 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH-
Confidence 2468899999999998743 4445577899999999999987432 1223567788999999999996543211
Q ss_pred ecccccc-ccccceeeeccCCCCC-CcchHhhcC---CC--CcEEe--CCCCC
Q 048333 369 FDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQ---NH--LVILN--LSDNR 412 (413)
Q Consensus 369 ~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l---~~--L~~L~--l~~n~ 412 (413)
.....+ ..++|++|++++|.|+ .-...+..+ .. |+.+. +.++.
T Consensus 230 -~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 230 -ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp -HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred -HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 111212 5678999999999998 222333322 21 66666 55554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=7.6e-14 Score=117.60 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=77.7
Q ss_pred hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCC
Q 048333 221 TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRS 300 (413)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 300 (413)
..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+.+ .+ .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 355666666666666665553 33 4555566666666666553 444445555666666666666653 22 4555666
Q ss_pred CcEEEccCCccccccc-ccccCCCCCCEEECCCCcCcceech--------hHhhhcccCCCeeeccCccc
Q 048333 301 LEVIYIAKCNFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVEL--------DVLLTSWKNLEALDISLNRS 361 (413)
Q Consensus 301 L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~~~L~~L~l~~~~i 361 (413)
|+.|++++|.+++... ..+..+++|++|++++|.+.+..+. ...+..+++|++|| ++.+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 6777776666653221 3455667777777777766543220 12466777788776 5554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=121.38 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCccEEECCCCcccccccccccccccccccc-CCCCccEEeCCCCcCCCcchhhh-hCCCCCCEEEccCCcCcccCCccc
Q 048333 170 SKLLHLDLSLNELQGEAASFRCFGELPISMG-NLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWST 247 (413)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l 247 (413)
+.|+.|++++|.++..... .+...+. ..++|++|++++|.+.......+ ..+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~-----~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT-----VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH-----HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH-----HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 5677777777777653221 1222222 22567777777776643322222 223456666666665542211111
Q ss_pred -----CCCCCCcEEEecCCccccc----cchhhccCCCCCeEecCCcccC
Q 048333 248 -----GNFSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLFLGFNNFS 288 (413)
Q Consensus 248 -----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 288 (413)
...++|++|++++|.+.+. ++..+...++|++|++++|.+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 1234455555555544221 1222233444445555444443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=4.1e-10 Score=105.26 Aligned_cols=298 Identities=12% Similarity=0.055 Sum_probs=178.8
Q ss_pred ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333 64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR 143 (413)
Q Consensus 64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (413)
+|..+.+|+.+.+..+ +.. +. ..+|.+|.+|+.+++.++ +......+|.+|+.|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~--I~----------------~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VRE--IG----------------EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCE--EC----------------TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCCC-ccC--cc----------------hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 7888889999888643 322 11 123556666666666543 222233445555555554443
Q ss_pred CCcccccchhhhh-----------hcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333 144 NCELQAMCSFFLI-----------QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ 212 (413)
Q Consensus 144 ~~~l~~~~~~~~~-----------~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 212 (413)
.+ +..+...... .....-...|.++++|+.+.+..+... . -...|.++.+|+.+.+..
T Consensus 126 ~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I---------~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 126 LM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-L---------HNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-E---------CTTTTTTCTTCCBCCCCT
T ss_pred Cc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCccce-e---------ccccccCCCCceEEEcCC
Confidence 22 1111000000 000011234666777777777654211 1 123466777777777765
Q ss_pred CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccc
Q 048333 213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL 292 (413)
Q Consensus 213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (413)
+ +...-..++..+..|+.+.+..+... +.........|+.+.+.... .......+..+..++.+.+..+... ...
T Consensus 195 ~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 195 N-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp T-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred C-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eec
Confidence 4 32233456677777777776554332 22233345678888776532 2333455778888888888766433 445
Q ss_pred ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccc
Q 048333 293 GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDAT 372 (413)
Q Consensus 293 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~ 372 (413)
..+..++.++.+......+ ....+..+.+|+.+.+..+ +. .++ ..++.+|.+|+.+++..+ ++.++...+.
T Consensus 270 ~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-- 340 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIG-EEAFESCTSLVSIDLPYL-VEEIGKRSFR-- 340 (394)
T ss_dssp CTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EEC-TTTTTTCTTCCEECCCTT-CCEECTTTTT--
T ss_pred cccccccccceeccCceee---ccccccccccccccccccc-cc-eec-hhhhcCCCCCCEEEeCCc-ccEEhHHhcc--
Confidence 6677788888888766443 2346778999999999765 33 444 338999999999999754 5544433322
Q ss_pred cccccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCC
Q 048333 373 TDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSD 410 (413)
Q Consensus 373 ~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~ 410 (413)
.|.+|+.+.+..+ ++.+. ..|.+|++|+.+++..
T Consensus 341 ---~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 341 ---GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ---TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ---CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 6789999999776 66554 5688999999998854
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=3.6e-10 Score=92.35 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=65.5
Q ss_pred CEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCC
Q 048333 230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC 309 (413)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~ 309 (413)
+.++++++.+. .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44555555544 233333 255666666666665555555666667777777777666554555666777777777777
Q ss_pred cccccccccccCCCCCCEEECCCCcCcc
Q 048333 310 NFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
.+++..+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7765555556677777777777777653
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=5.9e-10 Score=91.07 Aligned_cols=64 Identities=25% Similarity=0.189 Sum_probs=26.6
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG 262 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 262 (413)
+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4444444444444444443333333444444444444444433223333344444444444443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=5.8e-10 Score=91.45 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=60.5
Q ss_pred CEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCC
Q 048333 230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC 309 (413)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~ 309 (413)
+.++++++.+. .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 2333222 55566666666554444555666666666666666665444444556666777777776
Q ss_pred cccccccccccCCCCCCEEECCCCcCcc
Q 048333 310 NFSGQITSSLRNLTQLVVLDMAQNSYGG 337 (413)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 337 (413)
.+++..+..+..+++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6664444446667777777777776653
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=6.2e-09 Score=97.24 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=72.7
Q ss_pred chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347 (413)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 347 (413)
...|..+.+|+.+.+..+... ....++..++.|+.+.+.. .++.....+|..|.+|+.+++..+ +. .+. ..+|.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~-~~aF~~ 332 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QIL-DDAFAG 332 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EEC-TTTTTT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-Eeh-HhHhhC
Confidence 345667777777777654322 4455666677777777753 344344556777777777777654 22 333 336777
Q ss_pred ccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCC
Q 048333 348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN 411 (413)
Q Consensus 348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 411 (413)
|.+|+.+.|..+ ++.++...+. .|.+|+.+.+.++... ...+..+.+|+.+.+..+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~-----~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFS-----NCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGT-----TCTTCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred CCCCCEEEECcc-cCEEhHhHhh-----CCCCCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence 777777777644 4444433322 5667777777665322 133456677777766554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=9.4e-10 Score=90.17 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=5.9
Q ss_pred CCccEEECCCCccc
Q 048333 170 SKLLHLDLSLNELQ 183 (413)
Q Consensus 170 ~~L~~L~l~~~~i~ 183 (413)
++|+.|++++|.++
T Consensus 33 ~~L~~L~Ls~N~l~ 46 (174)
T 2r9u_A 33 TDKQRLWLNNNQIT 46 (174)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCcEEEeCCCCcc
Confidence 34444444444443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.05 E-value=1.7e-08 Score=94.23 Aligned_cols=269 Identities=11% Similarity=0.064 Sum_probs=146.6
Q ss_pred hhhcCCCCcEEEcCCcc---CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcc
Q 048333 106 LFEKLSNLKTLNLGDVS---IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL 182 (413)
Q Consensus 106 ~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 182 (413)
+|.+|.+|+.+.+.++. ++.....+|..|.+|+.+.+..+ ++. .-...+..+.+|+.+.+..+.
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~-----------I~~~aF~~c~~L~~i~lp~~~- 148 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE-----------IDSEAFHHCEELDTVTIPEGV- 148 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE-----------ECTTTTTTCTTCCEEECCTTC-
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce-----------ehhhhhhhhccccccccccee-
Confidence 35555566666554432 22222334555555555544332 111 112334556666666664331
Q ss_pred ccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333 183 QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG 262 (413)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 262 (413)
... -...+..+..|+.+.+..+ +...-..++. ...|+.+.+...... .....+..+..++........
T Consensus 149 ~~I---------~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 149 TSV---------ADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp CEE---------CTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSS
T ss_pred eee---------cccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccc
Confidence 111 1123555666666666543 2111222332 345666666543222 333445555566555544332
Q ss_pred cccccc-------------hhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEE
Q 048333 263 FWSKVP-------------HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329 (413)
Q Consensus 263 ~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 329 (413)
...... ..+.....+..+.+... +......+|..+..|+.+.+..... .....+|..|+.|+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIE 294 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEE
T ss_pred cccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCccccccccccccc
Confidence 210000 00111223334444322 2223455677889999999876443 24566788999999999
Q ss_pred CCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcc-hHhhcCCCCcEEeC
Q 048333 330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNL 408 (413)
Q Consensus 330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l 408 (413)
+... +. .++ ..+|.+|.+|+.++|..+ ++.+++..+. .|.+|+.+.+..+ ++.+. ..|.+|++|+.+++
T Consensus 295 l~~~-i~-~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 295 FSSR-IT-ELP-ESVFAGCISLKSIDIPEG-ITQILDDAFA-----GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CCTT-CC-EEC-TTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred CCCc-cc-ccC-ceeecCCCCcCEEEeCCc-ccEehHhHhh-----CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 9643 33 444 348999999999999865 4444433322 6789999999654 66554 67899999999999
Q ss_pred CCC
Q 048333 409 SDN 411 (413)
Q Consensus 409 ~~n 411 (413)
.++
T Consensus 365 ~~~ 367 (394)
T 4gt6_A 365 SGS 367 (394)
T ss_dssp SSC
T ss_pred CCc
Confidence 876
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.8e-09 Score=98.91 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=105.1
Q ss_pred CCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCC---------CcchhhhhCCCCCCEEEccCCcCc
Q 048333 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF---------GELPTSIRNLFSLEKLDLSFNKLS 240 (413)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~ 240 (413)
..++.|.+.......... -.....+...+..+++|+.|.+...... ..+...+..+|+|+.|.++++...
T Consensus 107 ~~v~~L~lg~~~~~~~~~-~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDC-SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCS-HHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcH-HHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 457788887655331000 0011123344556788888888654221 124455677888888888776311
Q ss_pred ccCCcccCCCCCCcEEEecCCccccccchhhc--cCCCCCeEecCCc--cc-CCc----ccccc--cCCCCCcEEEccCC
Q 048333 241 GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG--NFTRLQFLFLGFN--NF-SGD----LLGSI--GNLRSLEVIYIAKC 309 (413)
Q Consensus 241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~~----~~~~l--~~~~~L~~L~L~~~ 309 (413)
.++. + ..++|+.|++..|.+.......+. .+++|++|+++.+ .. .+. +...+ ..+|+|+.|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2232 2 267888888887776444333343 6788888887532 11 110 11112 23677777777777
Q ss_pred cccccccccc---cCCCCCCEEECCCCcCcceec--hhHhhhcccCCCeeeccCcccc
Q 048333 310 NFSGQITSSL---RNLTQLVVLDMAQNSYGGTVE--LDVLLTSWKNLEALDISLNRSS 362 (413)
Q Consensus 310 ~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~ 362 (413)
.+.+..+..+ ..+++|++|+++.|.+.+... +...+..+++|+.|++++|.++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 7654322222 246677777777777664321 1112345677777777777643
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=1.2e-08 Score=93.56 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=58.6
Q ss_pred EEeCCCC-cCCCcchhhhhCCCCCCEEEccC-CcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCC
Q 048333 207 ELDLSQN-GFFGELPTSIRNLFSLEKLDLSF-NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF 284 (413)
Q Consensus 207 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (413)
.++.+++ .+. .+|. +..+.+|+.|++++ |.+....+..+..+++|+.|++++|.+.+..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566655 454 4555 66666666666664 666544445566666666666666666555555556666666666666
Q ss_pred cccCCcccccccCCCCCcEEEccCCccc
Q 048333 285 NNFSGDLLGSIGNLRSLEVIYIAKCNFS 312 (413)
Q Consensus 285 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 312 (413)
|.+....+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 665543333333333 555555555554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=6.1e-09 Score=95.44 Aligned_cols=191 Identities=13% Similarity=0.118 Sum_probs=117.1
Q ss_pred CccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc
Q 048333 163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE 242 (413)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (413)
...+..+++|+.|.+.+........+-...+.+...+..+++|++|.++++.-. .++. + .+++|+.|++..+.+...
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 344556789999988765332110000001124455677889999999887322 2222 3 378999999988876533
Q ss_pred CCccc--CCCCCCcEEEecCC--cccc-----ccchhh--ccCCCCCeEecCCcccCCcccccc---cCCCCCcEEEccC
Q 048333 243 FPWST--GNFSSLKLLNLRSC--GFWS-----KVPHSI--GNFTRLQFLFLGFNNFSGDLLGSI---GNLRSLEVIYIAK 308 (413)
Q Consensus 243 ~~~~l--~~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~ 308 (413)
....+ ..+|+|+.|+++.+ ...+ .+...+ ..+++|++|++.+|.+.+.....+ ..+++|+.|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 22222 36789999998532 1111 111122 247899999999888764333333 2478999999999
Q ss_pred Cccccc----ccccccCCCCCCEEECCCCcCcceechhHhhhc-ccCCCeeeccCcc
Q 048333 309 CNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS-WKNLEALDISLNR 360 (413)
Q Consensus 309 ~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~L~~L~l~~~~ 360 (413)
|.+.+. ++..+..+++|+.|++++|.+++... . .+.. + ...+++++++
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~-~-~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK-K-ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH-H-HHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH-H-HHHHHc--CCEEEecCCc
Confidence 988753 23333567899999999998764322 2 2332 2 3668888776
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.79 E-value=4.4e-07 Score=84.11 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=87.4
Q ss_pred ccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCC
Q 048333 246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL 325 (413)
Q Consensus 246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L 325 (413)
.+..+..++.+.+... +.......+..+..|+.+.+..+ +......++..+.+|+.+.+..+ +.......|..|.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566677766543 22333445677778888887654 44344566777788888887543 443445677788888
Q ss_pred CEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcc-hHhhcCC
Q 048333 326 VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQN 401 (413)
Q Consensus 326 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~ 401 (413)
+.+.+.++.+. .++ ..+|.+|.+|+.+++..+ ++.++...+. .|.+|+.+.+..+ ++.+. ..|.+|+
T Consensus 289 ~~i~l~~~~i~-~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIE-TLE-PRVFMDCVKLSSVTLPTA-LKTIQVYAFK-----NCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCC-EEC-TTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccc-eeh-hhhhcCCCCCCEEEcCcc-ccEEHHHHhh-----CCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88888777665 333 237888888888888654 4444333322 5667777776543 44332 3344444
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=4.5e-08 Score=89.69 Aligned_cols=105 Identities=21% Similarity=0.099 Sum_probs=87.2
Q ss_pred cEEECCCC-ccccccccccccccccccccCCCCccEEeCCC-CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333 173 LHLDLSLN-ELQGEAASFRCFGELPISMGNLGSLKELDLSQ-NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF 250 (413)
Q Consensus 173 ~~L~l~~~-~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 250 (413)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+....+..+..+++|+.|++++|.+....+..+..+
T Consensus 11 ~~v~~~~~n~l~----------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 11 SGLRCTRDGALD----------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (347)
T ss_dssp SCEECCSSCCCT----------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred CEEEcCCCCCCC----------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence 35678877 776 3677 88889999999996 88886666789999999999999999987788888999
Q ss_pred CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCC
Q 048333 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG 289 (413)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 289 (413)
++|+.|++++|.+....+..+..++ |+.|++.+|.+..
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999999999998655555555555 9999999998763
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=9.3e-09 Score=85.08 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred hhccCCCCCeEecCCc-ccCCcc----cccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCc
Q 048333 270 SIGNFTRLQFLFLGFN-NFSGDL----LGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYG 336 (413)
Q Consensus 270 ~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 336 (413)
.+...++|++|++++| .+.+.. ...+...++|++|+|++|.+.+. +...+...+.|++|++++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3444555666666655 554321 22233344555555555555422 2222333444555555555444
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.69 E-value=2.6e-06 Score=78.91 Aligned_cols=295 Identities=9% Similarity=0.023 Sum_probs=166.8
Q ss_pred CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccC--cCccccC--Ccchh-hhhhcCCCCcEEE
Q 048333 43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIIN--LSRLELQ--KPSFE-NLFEKLSNLKTLN 117 (413)
Q Consensus 43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--L~~L~l~--~~~i~-~~~~~~~~L~~L~ 117 (413)
.+++.+.+... ++..... +|..|.+|+.+++..+ +... -...+.+ +..+.+- ...+. .+|..+ +|+.+.
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~--aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c~l~~i~~~~~l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEA--NFNSCYNMTKVTVAST-VTSI-GDGAFADTKLQSYTGMERVKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGCSEEEECTT-EEEECTT--TTTTCTTCCEEEECTT-CCEE-CTTTTTTCCCCEEEECTTCCEECTTTTTTC-CCSEEE
T ss_pred cCCEEEEeCCC-ccChHHH--HhhCCCCCCEEEeCCc-ceEe-chhhhcCCCCceEECCceeeEeccceeccC-Cccccc
Confidence 35666666543 3322333 7888999999998654 2221 1111211 2211111 01111 123333 566666
Q ss_pred cCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc---ccccc
Q 048333 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF---RCFGE 194 (413)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~---~~~~~ 194 (413)
+.++-. .....++.++ .|+.+.+... ++ ..-...+..+..++.+.+............ .....
T Consensus 120 lp~~~~-~i~~~~F~~~-~l~~~~~~~~-v~-----------~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (379)
T 4h09_A 120 FPGATT-EIGNYIFYNS-SVKRIVIPKS-VT-----------TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT 185 (379)
T ss_dssp CCTTCC-EECTTTTTTC-CCCEEEECTT-CC-----------EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS
T ss_pred CCCccc-cccccccccc-eeeeeeccce-ee-----------ccccchhcccccccccccccccceeecccceecccccc
Confidence 654321 1122233333 3444444322 11 112234556677777766544322111000 00011
Q ss_pred ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333 195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274 (413)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 274 (413)
....+..+..+..+.+..... .....++..+.+|+.+.+..+- .......+..+..|+.+.+..+ +.......|..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~ 262 (379)
T 4h09_A 186 ILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC 262 (379)
T ss_dssp EEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred eecccccccccccccccccee-EEeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCcccccee
Confidence 222344455666666544322 1334556677888888886553 2245556778889999999765 434445668888
Q ss_pred CCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCee
Q 048333 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL 354 (413)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 354 (413)
.+|+.+.+..+ +......++..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ +. .+. ..+|.+|.+|+.+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~-~~aF~~C~~L~~i 338 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQ-VYAFKNCKALSTI 338 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EEC-TTTTTTCTTCCCC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEH-HHHhhCCCCCCEE
Confidence 99999998654 44455667888999999999888887556778999999999999755 33 444 3489999999999
Q ss_pred eccCccccccc
Q 048333 355 DISLNRSSVLT 365 (413)
Q Consensus 355 ~l~~~~i~~l~ 365 (413)
.+..+ ++.++
T Consensus 339 ~ip~~-v~~I~ 348 (379)
T 4h09_A 339 SYPKS-ITLIE 348 (379)
T ss_dssp CCCTT-CCEEC
T ss_pred EECCc-cCEEc
Confidence 99754 44443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=6.2e-09 Score=86.17 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=77.8
Q ss_pred hhhhhhcCCCCcEEEcCCc-cCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEEC
Q 048333 103 FENLFEKLSNLKTLNLGDV-SIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL 177 (413)
Q Consensus 103 i~~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 177 (413)
+...+...+.|++|++++| .+.. .+...+...++|++|++++|.+.+... ..+...+...+.|++|++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~-------~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA-------FALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH-------HHHHHHHHHCSSCCEEEC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH-------HHHHHHHHhCCCcCEEEC
Confidence 4455677888888888888 7753 234455667788888888887764211 112334455677888888
Q ss_pred CCCccccccccccccccccccccCCCCccEEeC--CCCcCCCc----chhhhhCCCCCCEEEccCCcC
Q 048333 178 SLNELQGEAASFRCFGELPISMGNLGSLKELDL--SQNGFFGE----LPTSIRNLFSLEKLDLSFNKL 239 (413)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~ 239 (413)
++|.|++.... .+...+...+.|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 101 ~~N~i~~~g~~-----~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 101 ESNFISGSGIL-----ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCCHHHHH-----HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCcCCHHHHH-----HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 88877764321 13445566667777777 66766532 233444556666666666654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.4e-07 Score=76.19 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCcEEEecCCccccccchhhccCCCCCeEecCCcc-cCCcccccccCC----CCCcEEEccCCc-ccccccccccCCCCC
Q 048333 252 SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN-FSGDLLGSIGNL----RSLEVIYIAKCN-FSGQITSSLRNLTQL 325 (413)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~L~~~~-~~~~~~~~~~~~~~L 325 (413)
.|+.|++++|.+++.....+..+++|++|++++|. +++.....++.. ++|+.|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555444433444455555555555552 443333333332 245555555542 443323333444555
Q ss_pred CEEECCCCc
Q 048333 326 VVLDMAQNS 334 (413)
Q Consensus 326 ~~L~l~~n~ 334 (413)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.2e-07 Score=76.55 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=16.7
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEECCCCc
Q 048333 300 SLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNS 334 (413)
Q Consensus 300 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 334 (413)
.|+.|++++|.+++.....+..|++|++|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 34455555554443333334445555555555553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=8.6e-07 Score=77.05 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=14.1
Q ss_pred CccEEeCCCCcCCCcch-------hhhhCCCCCCEEE
Q 048333 204 SLKELDLSQNGFFGELP-------TSIRNLFSLEKLD 233 (413)
Q Consensus 204 ~L~~L~l~~~~~~~~~~-------~~l~~~~~L~~L~ 233 (413)
+|++|++++|.+...+| ..+..+|+|+.|+
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45555555555432221 2344556665554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=8.8e-06 Score=70.68 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=46.2
Q ss_pred cCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC-Ccc---
Q 048333 320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFP--- 394 (413)
Q Consensus 320 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~--- 394 (413)
..+++|+.|+|++|.+.+...+...+..+++|+.|+|++|.++.+++. ..+ .+ +|++|++++|.++ .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-----~~l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-----DKIKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-----GGGTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh-----hhcccC-CcceEEccCCcCccccCcch
Confidence 345666666666666654333222455666666667766665544211 111 12 5677777777665 233
Q ss_pred ----hHhhcCCCCcEEe
Q 048333 395 ----NFLENQNHLVILN 407 (413)
Q Consensus 395 ----~~~~~l~~L~~L~ 407 (413)
..+..+|+|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 3466777777776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.76 E-value=1.6e-05 Score=65.29 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=78.2
Q ss_pred hhhhhhcCCCCcEEEcCCc-cCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEEC
Q 048333 103 FENLFEKLSNLKTLNLGDV-SIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL 177 (413)
Q Consensus 103 i~~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 177 (413)
+...+..-+.|++|+|+++ .+.. .+...+..-..|++|+|++|.+.+... ..+...+...+.|+.|++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga-------~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA-------RGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH-------TTHHHHHHHCSSCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH-------HHHHHHHhcCCccCeEec
Confidence 3444666788999999875 6643 234455566778888888888775322 233445556678888888
Q ss_pred CCCccccccccccccccccccccCCCCccEEeCCCCc---CCC----cchhhhhCCCCCCEEEccCCc
Q 048333 178 SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG---FFG----ELPTSIRNLFSLEKLDLSFNK 238 (413)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~----~~~~~l~~~~~L~~L~l~~~~ 238 (413)
++|.|++.... .+...+...+.|++|+++++. +.. .+..++..-+.|+.|+++.+.
T Consensus 106 ~~N~Ig~~Ga~-----ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 106 ESNFLTPELLA-----RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CSSBCCHHHHH-----HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCCcCCHHHHH-----HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 88888765432 234456666678888887542 222 233445555667777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=4.5e-05 Score=62.64 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=48.1
Q ss_pred hccCCCCCeEecCCc-ccCCc----ccccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcceec-
Q 048333 271 IGNFTRLQFLFLGFN-NFSGD----LLGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTVE- 340 (413)
Q Consensus 271 ~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~- 340 (413)
+..-+.|+.|+++++ .+.+. +..++..-+.|+.|+|++|.+.+. +...+...+.|+.|+|++|.+.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 444566777777764 55432 233444556677777777766532 33344455666666666666653221
Q ss_pred -hhHhhhcccCCCeeeccCc
Q 048333 341 -LDVLLTSWKNLEALDISLN 359 (413)
Q Consensus 341 -~~~~~~~~~~L~~L~l~~~ 359 (413)
+...+.....|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 1223444455666666544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.92 E-value=0.012 Score=44.80 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=14.5
Q ss_pred ceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCC
Q 048333 380 IQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNR 412 (413)
Q Consensus 380 L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~ 412 (413)
|++|+|++|.|+.+| ..|..+++|+.|+|.+|+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 444444444444443 223444444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.37 E-value=0.043 Score=41.69 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=22.8
Q ss_pred CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcc
Q 048333 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCEL 147 (413)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 147 (413)
++|++|+|++|.++...+..|..+++|++|+|.+|.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3566666666666654445556666666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.66 E-value=29 Score=24.32 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=15.3
Q ss_pred ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEcc
Q 048333 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235 (413)
Q Consensus 199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 235 (413)
|.+|..|+.+.|..+- ...-..+|..|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEc
Confidence 4445555555444321 11222344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.14 E-value=29 Score=24.34 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=5.0
Q ss_pred cccCCCCCcEEEc
Q 048333 294 SIGNLRSLEVIYI 306 (413)
Q Consensus 294 ~l~~~~~L~~L~L 306 (413)
+|..+.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3333333333333
Done!