BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048334
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 32/178 (17%)
Query: 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ----- 61
S PL LAL I F+LGTAYSI LPFLRWK +A ++ + ++ QL F++HIQ
Sbjct: 214 SQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFR 273
Query: 62 ---------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMM 94
D+PD++GDR FGI++ SV +G++KVFW+ V ++
Sbjct: 274 RPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLL 333
Query: 95 LTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
AY AIL+GA+S+ L SK T++ H+ILA ILW R++++DL++K + SFYMFIWK
Sbjct: 334 EMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 104/176 (59%), Gaps = 32/176 (18%)
Query: 9 PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ------- 61
PL AL + F+LGTAYSI LP LRWK +A ++ + ++ Q+ FY+HIQ
Sbjct: 205 PLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264
Query: 62 -------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
D+PD++GD+ FGI++ SV +G+++VFW V ++
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324
Query: 97 AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
AY AILVGA+S F+ SK+++++ H ILA LW RA++VDLS+K S YMFIWK
Sbjct: 325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 32/176 (18%)
Query: 9 PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ------- 61
PL + I ++ +AY++ LP LRWK +P L + + + + L F++H+Q
Sbjct: 222 PLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRP 281
Query: 62 -------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
D+PD++GD +FGIQ+LS+ +G ++VFW+ V ++
Sbjct: 282 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEM 341
Query: 97 AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
YG ILVGA+S L SK++T++ H++LA +LW A++VDL++ SFYMFIWK
Sbjct: 342 TYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 32/176 (18%)
Query: 9 PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ------- 61
PL+ L++ TAYSI +P LRWK +PF+A M+ L + ++ H+Q
Sbjct: 221 PLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280
Query: 62 -------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
D+PDV+GD+E GI + +V +G+++ FW+ V
Sbjct: 281 IGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEM 340
Query: 97 AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
A+G IL GAS S +K+ T + +++LA ILW +A++VDLS+KAST SFYMFIWK
Sbjct: 341 AFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 10 LLLALIIWFLL------GTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDV 63
L++A + FLL T ++ LPF +W P TS + L LV + +D+
Sbjct: 231 LIIATVRGFLLNFGVYHATRAALGLPF-QWSA-PVAFITSFVTLFALVIAI-----TKDL 283
Query: 64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSI 123
PDV+GDR+F I TL+ +G + +LG ++L Y +AI + + + I +H I
Sbjct: 284 PDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVI 343
Query: 124 LAFILWRRAQTVDLSN--KASTLSFYMFIWK 152
LA L + ++ +N K + +Y FIW
Sbjct: 344 LASGLIFQTWVLEKANYTKEAISGYYRFIWN 374
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIIS 120
+D+PDV+GDR++ I TL+ +G + +LG +++ Y AAI V + V +
Sbjct: 274 KDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPV 333
Query: 121 HSILA----FILWRRAQTVDLSNKASTLSFYMFIWK 152
H+ LA F W Q + S +Y FIW
Sbjct: 334 HAALAVGIIFQTWVLEQAKYTKDAIS--QYYRFIWN 367
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 7 SPPLLLALIIW---FLLGTAYSIQLPFLRWKGHPFLAP-TSMMILMGLVYQL--LFYIHI 60
+PPL L W F LG +Y I LP+ W G T ++++ L+Y + L +
Sbjct: 227 APPLKLKQNGWVGNFALGASY-ISLPW--WAGQALFGTLTPDVVVLTLLYSIAGLGIAIV 283
Query: 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGV 91
D V+GDR G+Q+L V G E W+ V
Sbjct: 284 NDFKSVEGDRALGLQSLPVAFGTETAKWICV 314
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAIL 103
I+D+ D+DGDR+ G+QTL ++IG + + ++L A A+I+
Sbjct: 181 IKDIEDLDGDRKEGLQTLPIVIGVTPAYRVATGVLLVAVIASIV 224
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGV-YMMLTAYGAAILVGASSSFLLSKLVTI 118
I+D+ DV+GD G +TL +I GK++ ++GV + +LT + + V AS +V +
Sbjct: 173 IKDIEDVEGDMAKGAKTLPIIWGKKRAAYVGVLFALLTVIASFLPVKASVGVGYYAMVPV 232
Query: 119 ISHSILAFILWRRAQTVDLSNKASTL 144
+ A L R Q ++++K+ L
Sbjct: 233 DLLILYAAYLILRNQDREVAHKSQKL 258
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFW 88
++DV D+DGDR G++TL ++IG+ + +
Sbjct: 174 VKDVEDIDGDRAEGLRTLPIVIGERRSLY 202
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 7 SPPLLLALIIW---FLLGTAYSIQLPFLRWKGHPFLAP-TSMMILMGLVYQL--LFYIHI 60
+PPL L W F LG +Y I LP+ W G T ++++ +Y + L +
Sbjct: 218 APPLKLKQNGWIGNFALGASY-IGLPW--WAGQALFGTLTPDIVVLTCLYSIAGLGIAIV 274
Query: 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGV 91
D ++GDR G+Q+L V G E W+ V
Sbjct: 275 NDFKSIEGDRTLGLQSLPVAFGMETAKWICV 305
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 7 SPPLLLALIIW---FLLGTAYSIQLPFLRWKGHPFLAP-TSMMILMGLVYQL--LFYIHI 60
+PPL L W F LG +Y I LP+ W G T ++++ +Y + L +
Sbjct: 216 APPLKLKQNGWIGNFALGASY-IGLPW--WAGQALFGTLTPDIVVLTSLYSIAGLGIAIV 272
Query: 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGV 91
D V+GDR G+Q+L V G E W+ V
Sbjct: 273 NDFKSVEGDRALGLQSLPVAFGMETAKWICV 303
>sp|Q9V3R8|UBIA1_DROME UbiA prenyltransferase domain-containing protein 1 homolog
OS=Drosophila melanogaster GN=heix PE=2 SV=1
Length = 359
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 14 LIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFG 73
L+I L G S+ F+ GH L T+M + L +H + D D DR G
Sbjct: 205 LVILILFG-PISVLFAFMSQTGH--LDWTTMGYAIPLALNTEAILHSNNTRDADNDRRAG 261
Query: 74 IQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSS--FLLSKLVTIISHSILAFIL--- 128
I TL+++IG+ L ++ Y + G S FLL LVT+ AF +
Sbjct: 262 IVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWFLL-PLVTLPQ----AFQIEKR 316
Query: 129 WRRAQTVDL-SNKASTLSFYMFIWKASDC 156
+R QT+ L + + L+F+ I C
Sbjct: 317 FRNEQTMHLVPRQTAKLNFFFGILYVVAC 345
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEK 85
++D+ D++GD+ G +TL +IIG++K
Sbjct: 173 MKDIEDIEGDKALGARTLPIIIGEKK 198
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVY 92
++D+ DV+GD + G +TL +I+G+ K ++ +
Sbjct: 173 VKDIEDVEGDLKKGAKTLPIILGRRKAAYVAAF 205
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLG 90
I+D+ D++GD G +TL ++IG+++ ++G
Sbjct: 173 IKDIEDIEGDMAKGAKTLPILIGRKRAAYVG 203
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVF 87
I+DV D+ GDR G++TL V++G ++
Sbjct: 174 IKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVF 87
I+DV D+ GDR G++TL V++G ++
Sbjct: 174 IKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTA 97
++DV D+ GD++ G +TL ++IG +K ++ TA
Sbjct: 181 VKDVEDIVGDKKDGARTLPILIGAKKASYIAAAFGFTA 218
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWL----GVYMMLTAY 98
++D+ D++GD + G +TL +IIGK + + GV ++T++
Sbjct: 173 MKDIEDIEGDMKMGAKTLPIIIGKRRAAMISSIFGVLTVITSF 215
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTA 97
++D+ D+ GD G +TL IGK K F L +++ A
Sbjct: 170 VKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVA 207
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEK 85
++D+ D +GD+ G +TL ++IGK+K
Sbjct: 173 MKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 18 FLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTL 77
FL G AY+ W + P + + + ++ + L ++D D++GDR G TL
Sbjct: 141 FLFGGAYA------GWHALLDMLPIAAITFLAMLAREL----LKDAEDIEGDRAHGADTL 190
Query: 78 SVIIGKEK 85
++ IG K
Sbjct: 191 AIRIGVRK 198
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGA 100
++D DVDGD G +TL +I+G K G++ A GA
Sbjct: 173 LKDAEDVDGDAAGGARTLPMIVGVRKT---GIFAFACACGA 210
>sp|P51825|AFF1_HUMAN AF4/FMR2 family member 1 OS=Homo sapiens GN=AFF1 PE=1 SV=1
Length = 1210
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 111 LLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSL 164
+ S VTI SH + AF LW +A+ + NK F+ + + C LN+SL
Sbjct: 1141 MTSSYVTITSHVLTAFDLWEQAEALTRKNK----EFFARL-STNVCTLALNSSL 1189
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGV 91
I+D+ D++GD++ TL +I G +K L V
Sbjct: 168 IKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199
>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4
SV=1
Length = 304
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 40 APTSMMILMGLVYQLLFY--IHIQDVPDVDGDREFGIQTLSVIIGKE 84
+P +++M +Y L + + I D ++GDR+ GI++L + G E
Sbjct: 176 SPGFPIVMMATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPE 222
>sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis
thaliana GN=MED12 PE=1 SV=1
Length = 2235
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 66 VDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILA 125
V+ E + +++G K G+ + L + + + L KLV ++SI+A
Sbjct: 1475 VESPIEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAISRMQRMLPLKLVFPPAYSIIA 1534
Query: 126 FILWR 130
F+LWR
Sbjct: 1535 FVLWR 1539
>sp|O88573|AFF1_MOUSE AF4/FMR2 family member 1 OS=Mus musculus GN=Aff1 PE=2 SV=2
Length = 1216
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 111 LLSKLVTIISHSILAFILWRRAQTVDLSNK 140
+ S VTI SH + AF LW +A+ + NK
Sbjct: 1147 MTSSYVTITSHVLTAFSLWEQAEALTRKNK 1176
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 24/90 (26%)
Query: 32 RWKGHPFLAPTSMMILMG---------------LVYQLLFYIH---------IQDVPDVD 67
++KG PFL S+ L G LV LF I ++D D++
Sbjct: 121 KFKGIPFLGNLSVAYLSGSIFLFGGFLVGPESFLVMLPLFAITFFGTLARELLKDAEDIE 180
Query: 68 GDREFGIQTLSVIIGKEKVFWLGVYMMLTA 97
GDR G +TL + IG K L V +L A
Sbjct: 181 GDRLGGARTLPMQIGVRKTSVLAVIFVLFA 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,524,763
Number of Sequences: 539616
Number of extensions: 2189856
Number of successful extensions: 6121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 6074
Number of HSP's gapped (non-prelim): 96
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)