Query 048334
Match_columns 181
No_of_seqs 192 out of 363
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.1E-52 6.8E-57 363.7 17.0 162 2-163 85-278 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.9E-42 4.2E-47 303.0 19.2 157 6-164 118-305 (308)
3 PRK12392 bacteriochlorophyll c 99.7 1.6E-16 3.4E-21 141.4 14.1 134 8-148 125-282 (331)
4 TIGR01476 chlor_syn_BchG bacte 99.7 1.5E-16 3.2E-21 136.5 12.3 151 5-161 103-277 (283)
5 PRK13595 ubiA prenyltransferas 99.7 1.1E-15 2.5E-20 134.7 15.8 139 7-157 117-275 (292)
6 TIGR02056 ChlG chlorophyll syn 99.7 8.4E-16 1.8E-20 134.4 14.8 148 7-160 127-298 (306)
7 PLN00012 chlorophyll synthetas 99.7 2.4E-15 5.3E-20 136.0 17.2 150 7-162 196-369 (375)
8 PRK12872 ubiA prenyltransferas 99.6 9E-15 2E-19 124.6 14.8 101 6-108 102-228 (285)
9 PRK13105 ubiA prenyltransferas 99.6 3.1E-14 6.7E-19 124.5 18.1 142 6-158 103-270 (282)
10 PRK06080 1,4-dihydroxy-2-napht 99.6 6.4E-14 1.4E-18 120.4 18.0 150 7-163 112-287 (293)
11 PF01040 UbiA: UbiA prenyltran 99.6 5.6E-14 1.2E-18 115.2 14.4 132 7-147 91-246 (257)
12 PRK07566 bacteriochlorophyll/c 99.6 1.1E-13 2.4E-18 121.4 16.0 131 7-144 131-287 (314)
13 PRK05951 ubiA prenyltransferas 99.5 6.1E-13 1.3E-17 115.8 18.4 140 7-149 115-278 (296)
14 PRK12884 ubiA prenyltransferas 99.5 7.6E-13 1.7E-17 112.8 17.6 152 7-169 103-277 (279)
15 PRK13591 ubiA prenyltransferas 99.4 9.8E-13 2.1E-17 116.9 12.4 127 14-140 125-278 (307)
16 PRK07419 1,4-dihydroxy-2-napht 99.4 1.1E-11 2.4E-16 109.3 18.4 99 6-107 117-240 (304)
17 PRK12882 ubiA prenyltransferas 99.4 7.3E-12 1.6E-16 107.2 16.5 145 8-166 105-273 (276)
18 PLN02922 prenyltransferase 99.4 1.4E-11 3E-16 109.1 18.3 101 6-108 121-255 (315)
19 TIGR02235 menA_cyano-plnt 1,4- 99.4 1.7E-11 3.7E-16 107.0 18.5 98 7-107 105-227 (285)
20 COG0382 UbiA 4-hydroxybenzoate 99.4 1.2E-11 2.6E-16 106.7 16.6 139 8-155 116-278 (289)
21 PRK12875 ubiA prenyltransferas 99.4 2.7E-12 5.9E-17 112.1 11.8 93 11-105 116-229 (282)
22 PRK13387 1,4-dihydroxy-2-napht 99.4 4.9E-11 1.1E-15 105.4 18.9 100 6-107 112-255 (317)
23 PLN02809 4-hydroxybenzoate non 99.4 1.4E-11 3E-16 107.8 14.3 129 8-146 114-267 (289)
24 TIGR01475 ubiA_other putative 99.4 3.6E-11 7.9E-16 103.4 16.5 81 60-143 177-257 (282)
25 PRK09573 (S)-2,3-di-O-geranylg 99.3 1.3E-10 2.9E-15 99.8 17.8 150 7-168 103-275 (279)
26 TIGR00751 menA 1,4-dihydroxy-2 99.3 7.1E-11 1.5E-15 103.1 15.9 97 9-107 110-230 (284)
27 PRK12883 ubiA prenyltransferas 99.3 3E-10 6.4E-15 97.4 17.3 149 7-168 103-273 (277)
28 PRK12847 ubiA 4-hydroxybenzoat 99.2 4.6E-10 9.9E-15 96.9 14.6 80 60-143 184-263 (285)
29 TIGR01474 ubiA_proteo 4-hydrox 99.1 6.5E-09 1.4E-13 90.0 16.5 127 7-143 108-258 (281)
30 PRK12888 ubiA prenyltransferas 99.1 3.2E-09 6.8E-14 92.6 14.5 81 60-143 178-258 (284)
31 PRK13106 ubiA prenyltransferas 99.0 6.3E-09 1.4E-13 91.8 14.6 75 60-138 196-270 (300)
32 PRK12886 ubiA prenyltransferas 99.0 1.5E-08 3.2E-13 88.6 16.7 78 60-140 181-258 (291)
33 PRK12876 ubiA prenyltransferas 99.0 1.2E-08 2.5E-13 90.6 15.7 87 62-148 193-279 (300)
34 PRK12848 ubiA 4-hydroxybenzoat 99.0 1.5E-08 3.4E-13 87.5 15.3 79 61-143 182-260 (282)
35 PRK12874 ubiA prenyltransferas 99.0 3.5E-08 7.7E-13 86.3 15.8 83 60-145 186-268 (291)
36 PRK12870 ubiA 4-hydroxybenzoat 98.9 1.1E-08 2.4E-13 89.2 12.1 87 61-151 186-275 (290)
37 PRK12878 ubiA 4-hydroxybenzoat 98.9 5.3E-08 1.2E-12 86.1 16.4 82 62-147 213-294 (314)
38 PRK12869 ubiA protoheme IX far 98.9 2.8E-08 6E-13 86.0 14.2 77 61-140 179-255 (279)
39 PRK12895 ubiA prenyltransferas 98.9 2.4E-08 5.2E-13 87.7 14.0 82 62-147 180-262 (286)
40 TIGR01473 cyoE_ctaB protoheme 98.8 3.6E-07 7.8E-12 78.6 15.5 75 62-138 179-253 (280)
41 PRK12871 ubiA prenyltransferas 98.7 1.4E-06 3.1E-11 76.7 16.6 80 60-143 194-273 (297)
42 PRK04375 protoheme IX farnesyl 98.6 2.9E-06 6.3E-11 74.0 15.8 37 62-98 188-224 (296)
43 COG1575 MenA 1,4-dihydroxy-2-n 98.5 6.1E-06 1.3E-10 73.8 15.4 101 7-109 120-244 (303)
44 PRK12873 ubiA prenyltransferas 98.4 5.7E-06 1.2E-10 73.3 12.6 86 62-151 191-279 (294)
45 PRK13362 protoheme IX farnesyl 98.1 0.00025 5.4E-09 62.8 15.6 30 62-91 191-220 (306)
46 PRK13592 ubiA prenyltransferas 97.8 8.6E-05 1.9E-09 66.4 8.9 40 61-102 195-234 (299)
47 PLN02776 prenyltransferase 96.6 0.22 4.7E-06 45.4 17.0 102 63-174 173-277 (341)
48 KOG4581 Predicted membrane pro 94.4 0.16 3.4E-06 45.4 7.2 53 58-110 246-298 (359)
49 KOG1381 Para-hydroxybenzoate-p 91.5 0.39 8.5E-06 43.7 5.4 85 64-152 247-332 (353)
50 TIGR00751 menA 1,4-dihydroxy-2 79.7 42 0.00092 29.5 15.8 166 9-181 3-189 (284)
51 PRK12324 phosphoribose diphosp 77.9 5 0.00011 35.7 5.4 35 7-46 114-148 (295)
52 TIGR02056 ChlG chlorophyll syn 77.4 51 0.0011 29.1 16.2 44 60-104 73-119 (306)
53 PF06645 SPC12: Microsomal sig 61.7 56 0.0012 23.6 7.0 47 82-128 5-51 (76)
54 PF15192 TMEM213: TMEM213 fami 61.2 5.3 0.00011 29.8 1.5 13 164-176 61-73 (82)
55 COG0382 UbiA 4-hydroxybenzoate 60.0 1.1E+02 0.0025 26.3 10.4 15 60-74 66-80 (289)
56 PRK13387 1,4-dihydroxy-2-napht 58.9 1.3E+02 0.0029 26.8 15.4 21 161-181 194-214 (317)
57 PRK08238 hypothetical protein; 55.7 20 0.00044 33.9 4.8 33 7-44 294-326 (479)
58 TIGR01476 chlor_syn_BchG bacte 52.8 1.5E+02 0.0033 25.5 11.7 32 60-92 57-91 (283)
59 PRK07566 bacteriochlorophyll/c 50.7 1.8E+02 0.0039 25.8 10.8 36 60-96 84-122 (314)
60 PRK07419 1,4-dihydroxy-2-napht 47.8 2.1E+02 0.0044 25.6 14.5 95 83-181 92-199 (304)
61 PLN00012 chlorophyll synthetas 46.5 2.4E+02 0.0052 26.0 12.7 37 59-96 141-180 (375)
62 TIGR00886 2A0108 nitrite extru 43.2 1.9E+02 0.004 24.1 8.3 22 80-101 63-84 (366)
63 PRK12875 ubiA prenyltransferas 41.4 2.5E+02 0.0054 24.8 10.8 64 8-76 17-80 (282)
64 TIGR02235 menA_cyano-plnt 1,4- 38.2 2.8E+02 0.0061 24.4 16.7 95 83-181 79-186 (285)
65 PRK05951 ubiA prenyltransferas 31.6 3.5E+02 0.0077 23.6 16.5 18 8-25 13-30 (296)
66 TIGR02332 HpaX 4-hydroxyphenyl 30.3 3.8E+02 0.0083 23.6 10.1 46 79-124 68-113 (412)
67 PF06212 GRIM-19: GRIM-19 prot 29.3 62 0.0013 25.9 3.0 30 29-58 16-48 (130)
68 PRK10133 L-fucose transporter; 26.5 4.8E+02 0.01 23.5 9.3 77 77-153 84-164 (438)
69 PLN02922 prenyltransferase 26.5 4.7E+02 0.01 23.4 16.5 22 160-181 192-213 (315)
70 PRK08319 cobalt transport prot 26.5 4E+02 0.0088 22.6 10.0 72 7-89 9-88 (224)
71 PF06305 DUF1049: Protein of u 25.5 30 0.00065 23.3 0.6 18 8-25 22-39 (68)
72 PRK12882 ubiA prenyltransferas 25.3 4.3E+02 0.0093 22.5 11.4 37 60-97 57-96 (276)
73 PRK09848 glucuronide transport 24.5 4.8E+02 0.01 23.1 8.1 23 79-101 289-311 (448)
74 COG3235 Predicted membrane pro 23.8 1.7E+02 0.0038 25.5 4.9 95 73-169 69-200 (223)
75 PF13829 DUF4191: Domain of un 23.3 3.5E+02 0.0076 23.7 6.8 44 86-129 27-70 (224)
76 COG4420 Predicted membrane pro 21.3 1.8E+02 0.0038 25.1 4.5 38 2-39 52-90 (191)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.1e-52 Score=363.73 Aligned_cols=162 Identities=54% Similarity=0.889 Sum_probs=156.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHhc--------------------
Q 048334 2 GVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ-------------------- 61 (181)
Q Consensus 2 g~~~~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h~~-------------------- 61 (181)
|+..|++|+++++..++++|++||+|+||+||||+|+++++|++++|++++|+|+|+||+
T Consensus 85 a~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f 164 (280)
T PLN02878 85 GWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAF 164 (280)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999964
Q ss_pred ------------cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 048334 62 ------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILW 129 (181)
Q Consensus 62 ------------DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~ 129 (181)
|+||+||||++|+||+|+++|+|+++++|..++.+||++++.+|++++..+++++++++|++++..+|
T Consensus 165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~ 244 (280)
T PLN02878 165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILW 244 (280)
T ss_pred HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCchhHHHHHHHHHHHHHhhhhHHHH
Q 048334 130 RRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTS 163 (181)
Q Consensus 130 ~r~~~vdl~sk~si~sfY~fIWkLFy~e~~~~~~ 163 (181)
+|++++|++||++++|||||||||||+||++...
T Consensus 245 ~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~ 278 (280)
T PLN02878 245 QRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPL 278 (280)
T ss_pred HHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998743
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.9e-42 Score=303.02 Aligned_cols=157 Identities=37% Similarity=0.612 Sum_probs=147.6
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHh-------------------------
Q 048334 6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI------------------------- 60 (181)
Q Consensus 6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h~------------------------- 60 (181)
.+++.++..++++++|++|| +||+|+||+|+++..|+++++|.+.++|.|.|.
T Consensus 118 ~~~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (308)
T PRK12887 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFT 195 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 36788888899999999999 999999999999999999999988888866542
Q ss_pred ------ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 048334 61 ------QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQT 134 (181)
Q Consensus 61 ------~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~ 134 (181)
+|+||+||||+.|+||+|+++|+|++.+++..++.++|+..++.++.....+++.+++++|++++..+|+|+++
T Consensus 196 ~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK12887 196 FAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQR 275 (308)
T ss_pred HHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 19999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhhhHHHHH
Q 048334 135 VDLSNKASTLSFYMFIWKASDCYTTLNTSL 164 (181)
Q Consensus 135 vdl~sk~si~sfY~fIWkLFy~e~~~~~~~ 164 (181)
+|++||++++|||||||||||+||++...+
T Consensus 276 ~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~ 305 (308)
T PRK12887 276 VDLQDKQAIAQFYQFIWKLFFLEYLLFPIA 305 (308)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998654
No 3
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.71 E-value=1.6e-16 Score=141.41 Aligned_cols=134 Identities=19% Similarity=0.310 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH------------------HHH-HHH-----HHHhccC
Q 048334 8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL------------------VYQ-LLF-----YIHIQDV 63 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~------------------i~~-lg~-----f~h~~Di 63 (181)
+++++..+++++++++|| .||+|+||++++.........+. +.. ..+ +.+++|+
T Consensus 125 ~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~ 202 (331)
T PRK12392 125 MVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDF 202 (331)
T ss_pred HHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344455568899999999 89999999987533221111110 000 111 1246799
Q ss_pred CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334 64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST 143 (181)
Q Consensus 64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si 143 (181)
+|+||||+.|+||+|+++|+|++++++...+.+.++..+..+...... ......-++++.++++|.+. .+||.+-
T Consensus 203 ~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~l--~r~p~~~ 277 (331)
T PRK12392 203 KSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFT---VLMYFILVGLVLNIVIQIQL--YRDPKGG 277 (331)
T ss_pred cchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHH--HhChhhh
Confidence 999999999999999999999999999988888888888888776642 33334556677778888876 6777766
Q ss_pred HHHHH
Q 048334 144 LSFYM 148 (181)
Q Consensus 144 ~sfY~ 148 (181)
.||-|
T Consensus 278 ~~~~~ 282 (331)
T PRK12392 278 ISFMQ 282 (331)
T ss_pred hHHHh
Confidence 66654
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.70 E-value=1.5e-16 Score=136.46 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=101.5
Q ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh----HHHHHHH---HH-----------H--HHHHHHH----HHh
Q 048334 5 SRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLA----PTSMMIL---MG-----------L--VYQLLFY----IHI 60 (181)
Q Consensus 5 ~~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~la----a~~i~~v---~g-----------~--i~~lg~f----~h~ 60 (181)
.++++......++++++++|| .||+|+||++++. +.++... .+ + .+..+++ .|.
T Consensus 103 l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~ 180 (283)
T TIGR01476 103 LGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTL 180 (283)
T ss_pred HHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344443555567888999999 9999999998643 2221110 10 1 1122222 356
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK 140 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk 140 (181)
+|++|+||||+.|.||+|+++|+|++.+++..++.++|+..+........ +....+.-+++...++.+.+.+ .+++
T Consensus 181 nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~ll~~p~~~~~~~~~-~~~~ 256 (283)
T TIGR01476 181 NDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQ---PWVATIVFLLLVAQIYNQIKLF-LRDP 256 (283)
T ss_pred HhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHH-HhCh
Confidence 79999999999999999999999999999999999999877755544322 1211223334444444444433 3477
Q ss_pred hhHHHHHHHHHHHHHhhhhHH
Q 048334 141 ASTLSFYMFIWKASDCYTTLN 161 (181)
Q Consensus 141 ~si~sfY~fIWkLFy~e~~~~ 161 (181)
++...-|+..+|++++--.+-
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~ 277 (283)
T TIGR01476 257 QQNYVRYNATANPFYVLGMLA 277 (283)
T ss_pred HHhhHHhhhhcHHHHHHHHHH
Confidence 778888999999998866543
No 5
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.68 E-value=1.1e-15 Score=134.68 Aligned_cols=139 Identities=23% Similarity=0.259 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHH-----HH---------HHHHHH--H---HH-hccCCCh
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILM-----GL---------VYQLLF--Y---IH-IQDVPDV 66 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~-----g~---------i~~lg~--f---~h-~~DipDi 66 (181)
+|..+....++++++++|| +||+|+|++|+++++|+.... +. ...++. | .| +.|+||+
T Consensus 117 ~~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~~~g~p~~~~~~~~g~~~~~~~l~a~~~w~~g~dii~ai~Di 194 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSNAAYALPLALPALALGAPVPWPPLLALMAWSVGKHAFDAAQDI 194 (292)
T ss_pred hHHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHhccCh
Confidence 4455566678899999999 999999999999988874211 10 111111 1 23 4599999
Q ss_pred hhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhHHHH
Q 048334 67 DGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSF 146 (181)
Q Consensus 67 eGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si~sf 146 (181)
||||+.|+||+|+++|+|++.++|..+..++ +.+-+..+.. -.+...+.-...+..+| -|.+..++-..|
T Consensus 195 egDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a----~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 264 (292)
T PRK13595 195 PADRAAGTRTVATTLGVRGTALYALAWFLLA----GALLWPVSRL-TALALWLICGGMALALW-----RRPTPETAHRLY 264 (292)
T ss_pred HhHHHcCCeechHHhCcHhHHHHHHHHHHHH----HHHHHHhcch-HHHHHHHHHHHHHHHHh-----cCCCHHHHhccc
Confidence 9999999999999999999999998554443 3322222211 12223334444444454 455556666777
Q ss_pred HHHHHHHHHhh
Q 048334 147 YMFIWKASDCY 157 (181)
Q Consensus 147 Y~fIWkLFy~e 157 (181)
=.|+|-.+-+-
T Consensus 265 ~~~~~~~~~~g 275 (292)
T PRK13595 265 PLSIVTPWIVG 275 (292)
T ss_pred hHHHHHhHHHH
Confidence 77888776555
No 6
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.68 E-value=8.4e-16 Score=134.41 Aligned_cols=148 Identities=17% Similarity=0.144 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH------------------HHH--HHHH----HHhcc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL------------------VYQ--LLFY----IHIQD 62 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~------------------i~~--lg~f----~h~~D 62 (181)
+++.++..+++++++++|| .||+|+||++++....+....+. +.. .+++ ...+|
T Consensus 127 ~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~ 204 (306)
T TIGR02056 127 FPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVND 204 (306)
T ss_pred chHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666678899999999 99999999987644433221111 100 1111 12469
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS 142 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s 142 (181)
++|+||||+.|.||+|+++|+|++.+++..++..+|...+.........+ .....-.+....++++.+.+ .+|+++
T Consensus 205 ~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~ll~ll~~p~~~~~~~~~-~~~~~~ 280 (306)
T TIGR02056 205 FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENL---YAAALVALIIPQITFQDKYF-LKDPLK 280 (306)
T ss_pred ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHH-HhChHh
Confidence 99999999999999999999999999999998888877665444332211 11223334456666665644 348888
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 048334 143 TLSFYMFIWKASDCYTTL 160 (181)
Q Consensus 143 i~sfY~fIWkLFy~e~~~ 160 (181)
....|+..-++||+---+
T Consensus 281 ~~~~~~~~~~~~~~~~~~ 298 (306)
T TIGR02056 281 NDVKYQASAQPFLVLGIF 298 (306)
T ss_pred hCcchhhhhhHHHHHHHH
Confidence 999999999999986543
No 7
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.67 E-value=2.4e-15 Score=136.01 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=103.8
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHH------------H------HHHHHHHH------HHhcc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILM------------G------LVYQLLFY------IHIQD 62 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~------------g------~i~~lg~f------~h~~D 62 (181)
+|+.++..+++++++++|| .||+|+||++++....+.+.. | ++..+..+ ...+|
T Consensus 196 ~~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd 273 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVND 273 (375)
T ss_pred cHHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444554567889999999 999999999997443321111 1 11111111 23569
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS 142 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s 142 (181)
++|+||||+.|++|+|+++|+|++.+++..++.+.+...+..-..... ..+....-.+.+.+++++.+.+ ++||.+
T Consensus 274 ~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~---~~y~~~~~~l~l~~l~~~~~~~-~~~p~~ 349 (375)
T PLN00012 274 FKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGK---PYYALALLGLIIPQIFFQFKYF-LPDPVK 349 (375)
T ss_pred hcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH-hcCHHH
Confidence 999999999999999999999999999988777777655433222211 2333344445666676666633 679999
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 048334 143 TLSFYMFIWKASDCYTTLNT 162 (181)
Q Consensus 143 i~sfY~fIWkLFy~e~~~~~ 162 (181)
....|+..-+.|++--.+.+
T Consensus 350 ~~~~~~~~a~~~~~~~~l~~ 369 (375)
T PLN00012 350 NDVKYQASAQPFLVFGLLVT 369 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776653
No 8
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=9e-15 Score=124.57 Aligned_cols=101 Identities=30% Similarity=0.452 Sum_probs=78.7
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCc-ccccchhhhHHHHHHHHHHHHHHHH-H------------------H------H
Q 048334 6 RSPPLLLALIIWFLLGTAYSIQLPFL-RWKGHPFLAPTSMMILMGLVYQLLF-Y------------------I------H 59 (181)
Q Consensus 6 ~s~~l~~~~~~~l~lg~~YSv~~PPl-RlKr~p~laa~~i~~v~g~i~~lg~-f------------------~------h 59 (181)
.+++.++...++.++++.|| .||. |+||.|.+....+...+|....++. + . .
T Consensus 102 ~~~~~~~~~~~~~~~~~~Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~ 179 (285)
T PRK12872 102 GGPKFALIFIIPLILGILYS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIREI 179 (285)
T ss_pred ccHHHHHHHHHHHHHHHHHh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 46777788888999999999 7776 6999998877766655543222211 1 1 1
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASS 108 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 108 (181)
++|++|+||||+.|++|+|+++|+|++.+++..+..+.++..+......
T Consensus 180 ~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~ 228 (285)
T PRK12872 180 VFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG 228 (285)
T ss_pred HHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3499999999999999999999999999999999999988887655543
No 9
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.62 E-value=3.1e-14 Score=124.54 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHH--HH----H------------HHHHHHHH------HHhc
Q 048334 6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMI--LM----G------------LVYQLLFY------IHIQ 61 (181)
Q Consensus 6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~--v~----g------------~i~~lg~f------~h~~ 61 (181)
++|+.+....++++.++.|| .||.|+|++|+.+..+... .. | .+...+.. ...+
T Consensus 103 ~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~ 180 (282)
T PRK13105 103 GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFG 180 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666669999999999 9999999999986633211 11 1 01111111 1246
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc--CCC
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVD--LSN 139 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vd--l~s 139 (181)
|+||+||||+.|+||+|+++|+|++.+++..+..++++..+..+... .... .+..+......+.+. -++
T Consensus 181 ~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~~~------~~l~---ll~~p~~~~~~~~~~~~~~~ 251 (282)
T PRK13105 181 AVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPWPG------WLAA---VLALPYVVNTARFWSVTDAD 251 (282)
T ss_pred hCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHH---HHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999998887444221 1111 111122222223222 357
Q ss_pred chhHHHHHHHHHHHHHhhh
Q 048334 140 KASTLSFYMFIWKASDCYT 158 (181)
Q Consensus 140 k~si~sfY~fIWkLFy~e~ 158 (181)
++++..-|.-.-++=+.--
T Consensus 252 ~~~l~~~l~~~~~~~~~~~ 270 (282)
T PRK13105 252 CERANRGWRRFLWLNYVSG 270 (282)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778777766555444433
No 10
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.61 E-value=6.4e-14 Score=120.41 Aligned_cols=150 Identities=16% Similarity=0.080 Sum_probs=95.0
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHH---------------------HHHHH----HHhc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVY---------------------QLLFY----IHIQ 61 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~---------------------~lg~f----~h~~ 61 (181)
+++.++..+++++++++|| .||.|+|++++-...+-+ ..|... +.+++ .+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~glge~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n 188 (293)
T PRK06080 112 GWWLLLLGLLCIAAAILYT--GGPKPYGYTGLGELFVGV-FFGLVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLAN 188 (293)
T ss_pred hHHHHHHHHHHHHHhhhhc--CCCCccCCCCcHHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666678899999999 999999998863222211 111111 11111 2356
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC-CCc
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDL-SNK 140 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl-~sk 140 (181)
|+||+||||+.|+||+|+++|+|++.++...+..++|+..+...+.....+ ... .-.+..+..+++.+.+.- +++
T Consensus 189 ~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l-l~ll~~p~~~~~~~~~~~~~~~ 264 (293)
T PRK06080 189 NIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP---WGL-LFLLSLPLAVKAARPVLRKQKP 264 (293)
T ss_pred CCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHH-HHHHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999999999999998887766542211 111 122223344444443322 245
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHH
Q 048334 141 ASTLSFYMFIWKASDCYTTLNTS 163 (181)
Q Consensus 141 ~si~sfY~fIWkLFy~e~~~~~~ 163 (181)
++.....+..-+.....-.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~ 287 (293)
T PRK06080 265 ETLIPALKATGKTNLLFGLLFAI 287 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444433
No 11
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.58 E-value=5.6e-14 Score=115.22 Aligned_cols=132 Identities=27% Similarity=0.387 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHH--------------------H----HHhcc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLF--------------------Y----IHIQD 62 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~--------------------f----~h~~D 62 (181)
+++.+....++.+++.+|| ||+|+||+|++....+..+.+....+|. + .|.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
T PF01040_consen 91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFND 167 (257)
T ss_pred CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666678888899999 9999999999766665544332221111 1 23459
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS 142 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s 142 (181)
++|+||||+.|.||+|+++|++++.. ..+....+.. ..... .............+.+..++...+..+.+++++
T Consensus 168 ~~D~~~D~~~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 241 (257)
T PF01040_consen 168 IRDIEGDRKAGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLL---GLFSPWPLIIALLLAALALIFILWFFRKRDPKK 241 (257)
T ss_pred hhhHHHHHHcCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999998 2122222221 11111 112233344444444444444444455555555
Q ss_pred HHHHH
Q 048334 143 TLSFY 147 (181)
Q Consensus 143 i~sfY 147 (181)
.+.++
T Consensus 242 ~~~~~ 246 (257)
T PF01040_consen 242 PERLF 246 (257)
T ss_pred HHHHH
Confidence 55444
No 12
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.57 E-value=1.1e-13 Score=121.45 Aligned_cols=131 Identities=20% Similarity=0.257 Sum_probs=84.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHH--------------------HHH--HHHHH----HHh
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMG--------------------LVY--QLLFY----IHI 60 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g--------------------~i~--~lg~f----~h~ 60 (181)
+++..+..+++++++++|| .||+|+||++++....+....| ++. ..++. .+.
T Consensus 131 ~~~~~~l~l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 208 (314)
T PRK07566 131 GPWVFLAALLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTL 208 (314)
T ss_pred ChHHHHHHHHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555668899999999 8999999999753221111100 111 11111 245
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK 140 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk 140 (181)
+|++|+||||+.|+||+|+++|+|++.++...++.++|+..+........ .....+.-.+.+..++++.+. .+++
T Consensus 209 ~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~~--~~~~ 283 (314)
T PRK07566 209 NDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQ---PLYAAIVGLLLIPQITLQDRL--LRDP 283 (314)
T ss_pred HHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHH--hhCh
Confidence 69999999999999999999999999999999999888876544322221 222223334455666666666 3344
Q ss_pred hhHH
Q 048334 141 ASTL 144 (181)
Q Consensus 141 ~si~ 144 (181)
++..
T Consensus 284 ~~~~ 287 (314)
T PRK07566 284 LERD 287 (314)
T ss_pred hhcC
Confidence 4433
No 13
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.54 E-value=6.1e-13 Score=115.84 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh---HHH---------HHHHHH------H--HHHHHH----HHHhcc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLA---PTS---------MMILMG------L--VYQLLF----YIHIQD 62 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~la---a~~---------i~~v~g------~--i~~lg~----f~h~~D 62 (181)
+++.+...++++++++.|| .||+|+|+.|+=. +.+ ++...+ + -++.++ ..+.++
T Consensus 115 ~~~~l~l~~~~~~~~~~Yt--~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~ 192 (296)
T PRK05951 115 GIGAVTLALLGVFLWTCYM--GPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNN 192 (296)
T ss_pred cHHHHHHHHHHHHHHHHHc--CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCC
Confidence 4455555578999999999 9999999876411 111 111001 1 112222 245679
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS 142 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s 142 (181)
++|+|+||+.|.||+|+++|+|++ .+-......+|+..+...+..-..+......+++.+....+.++.+..|.++++.
T Consensus 193 ~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~ 271 (296)
T PRK05951 193 LRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEA 271 (296)
T ss_pred CccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 999999999999999999999999 6555667778877666555432222234455566666666667777767766666
Q ss_pred HHHHHHH
Q 048334 143 TLSFYMF 149 (181)
Q Consensus 143 i~sfY~f 149 (181)
..+.+..
T Consensus 272 ~~~~~~~ 278 (296)
T PRK05951 272 TVQLFML 278 (296)
T ss_pred HHHHHHH
Confidence 6666655
No 14
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.53 E-value=7.6e-13 Score=112.85 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH-----------------HHH-HHHH---HH--hccC
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL-----------------VYQ-LLFY---IH--IQDV 63 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~-----------------i~~-lg~f---~h--~~Di 63 (181)
++..++..++++++++.|| .|+||+|++....+....|. ... ..++ .| .+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 177 (279)
T PRK12884 103 SPLAFLVVILVSVLGILYN-----WKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDI 177 (279)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HhhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566678889999999 58999998654443322221 100 1111 12 4599
Q ss_pred CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334 64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST 143 (181)
Q Consensus 64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si 143 (181)
||+||||+.|+||+|+++|+|++.+++.......++..+...+..... ....+..-......++...+.++-+|+
T Consensus 178 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~~~~l~~~~~~~~~~~~--- 252 (279)
T PRK12884 178 EDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFN--ILYLAPVLVADLIFLYSAYSLLRSQDR--- 252 (279)
T ss_pred hhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhcCCCH---
Confidence 999999999999999999999999999988888887665544432211 222222222222222222345443333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 048334 144 LSFYMFIWKASDCYTTLNTSLFILCV 169 (181)
Q Consensus 144 ~sfY~fIWkLFy~e~~~~~~~~~~~~ 169 (181)
++++++ ++.++..-++-.++|.+|-
T Consensus 253 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 277 (279)
T PRK12884 253 ETIRKV-RKITLTAMLLALVAFALGA 277 (279)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 335555 6667776677777788773
No 15
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.45 E-value=9.8e-13 Score=116.92 Aligned_cols=127 Identities=19% Similarity=0.176 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcC--CCCC--cccccchhhhHHHHHHHHHHHH---------------HHHHHH--------HhccCCCh
Q 048334 14 LIIWFLLGTAYSI--QLPF--LRWKGHPFLAPTSMMILMGLVY---------------QLLFYI--------HIQDVPDV 66 (181)
Q Consensus 14 ~~~~l~lg~~YSv--~~PP--lRlKr~p~laa~~i~~v~g~i~---------------~lg~f~--------h~~DipDi 66 (181)
.+++.+.|+.||. ..|| +|+|+.|.+..+.++...|... ..+++. .++|++|+
T Consensus 125 ~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~~~~~~i~l~~~~~l~~~~iindirDi 204 (307)
T PRK13591 125 AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSLIPVGLIFLFFGVKLFINSCVYDFKDV 204 (307)
T ss_pred HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3578889999992 1225 4999998865555444333211 111221 34699999
Q ss_pred hhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334 67 DGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK 140 (181)
Q Consensus 67 eGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk 140 (181)
||||+.|.+|+|+++|++++.++...+..++|+..++..+..--.+.+.+.+-+-.+-+..+|.-++..|-+++
T Consensus 205 EGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 278 (307)
T PRK13591 205 KGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSPFENEPS 278 (307)
T ss_pred HhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCCcccCcH
Confidence 99999999999999999999999999999999988776665444455666665556666677766666544433
No 16
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.44 E-value=1.1e-11 Score=109.33 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH---------------------HHHHHHH----HHh
Q 048334 6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL---------------------VYQLLFY----IHI 60 (181)
Q Consensus 6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~---------------------i~~lg~f----~h~ 60 (181)
.+|+++....+|+++|++|| .||+|+|++|+ .-...+...|. .++.|+. ++.
T Consensus 117 ~g~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~ 193 (304)
T PRK07419 117 SDWTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFC 193 (304)
T ss_pred hcHHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35777777779999999999 99999999996 21111212221 1223322 345
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS 107 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 107 (181)
|++||+|.||+.|.||+|+++|+|++.++-..+...+|+..+.....
T Consensus 194 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 194 SHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL 240 (304)
T ss_pred cCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988766554
No 17
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.43 E-value=7.3e-12 Score=107.20 Aligned_cols=145 Identities=24% Similarity=0.269 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHH----------------HHHH--HHHH------hccC
Q 048334 8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLV----------------YQLL--FYIH------IQDV 63 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i----------------~~lg--~f~h------~~Di 63 (181)
+...+...++++++++|| .|+||+|++....+....|.. ..++ .+.+ ++|+
T Consensus 105 ~~~~~~~~~~~~~~~~Yt-----~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~ 179 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYA-----ETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIKDV 179 (276)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444457788899999 599999987544432222210 0111 1111 3599
Q ss_pred CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334 64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST 143 (181)
Q Consensus 64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si 143 (181)
||+||||+.|++|+|+++|+|++.+++........+.....-.. ...+....+..-...+..++.+.+..|.+|++
T Consensus 180 ~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~-- 255 (276)
T PRK12882 180 EDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL--STFGLWYLVLVAPADLVMLAAAYRSLKKTDPT-- 255 (276)
T ss_pred hhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHH--
Confidence 99999999999999999999999998776665554443321111 11223344433333444455556666656654
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 048334 144 LSFYMFIWKASDCYTTLNTSLFI 166 (181)
Q Consensus 144 ~sfY~fIWkLFy~e~~~~~~~~~ 166 (181)
.-|+.|...-......|+
T Consensus 256 -----~~~~~f~~~~~~g~~~~~ 273 (276)
T PRK12882 256 -----ASQKLLKYGMFLALAAFI 273 (276)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 335555554444444443
No 18
>PLN02922 prenyltransferase
Probab=99.43 E-value=1.4e-11 Score=109.10 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhh---hHHH---------HHHHHH------------------HHHHHH
Q 048334 6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFL---APTS---------MMILMG------------------LVYQLL 55 (181)
Q Consensus 6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~l---aa~~---------i~~v~g------------------~i~~lg 55 (181)
++|++++--.+|++.|+.|| .||+|+|++|+= .+.+ +....+ .-++.|
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~g 198 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQ--CPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVG 198 (315)
T ss_pred cChHHHHHHHHHHHHHHHHh--cCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHH
Confidence 46777777789999999999 999999999981 1111 111111 111223
Q ss_pred HH----HHhccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048334 56 FY----IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASS 108 (181)
Q Consensus 56 ~f----~h~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 108 (181)
+. ++.|+++|+|.||+.|.||+|+++|+|++.++-.+++..+|+..+...+..
T Consensus 199 ll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 255 (315)
T PLN02922 199 LTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK 255 (315)
T ss_pred HHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 346799999999999999999999999999999999999999887666554
No 19
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.43 E-value=1.7e-11 Score=106.99 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH---------------------HHHHHHH----HHhc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL---------------------VYQLLFY----IHIQ 61 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~---------------------i~~lg~f----~h~~ 61 (181)
+|+++....+|+++|+.|| .||+|+|++|+= =...+...|. .++.|+. +|.|
T Consensus 105 ~~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gLG-E~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~N 181 (285)
T TIGR02235 105 QITVLALVGLCCFLGYLYQ--GPPFRLGYQGLG-EPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFCS 181 (285)
T ss_pred hHHHHHHHHHHHHHHHhhc--CCCcccCCCCcc-HHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777778999999999 999999999961 1111111111 1122322 4567
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS 107 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 107 (181)
+++|+|.||+.|.||+|+++|+|++.++-..++..+|+..+..-..
T Consensus 182 n~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 182 HFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred CCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987765554
No 20
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.42 E-value=1.2e-11 Score=106.72 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHH------------------------HhccC
Q 048334 8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYI------------------------HIQDV 63 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~------------------------h~~Di 63 (181)
+..+....++++++++| .++||.+++...++..+.+.....|..+ ..+|+
T Consensus 116 ~~~~~l~~~~~~l~~~Y------~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~ 189 (289)
T COG0382 116 PLAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAI 189 (289)
T ss_pred HHHHHHHHHHHHHHHHH------HHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456667899999999 5999999998887665544322222211 12399
Q ss_pred CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334 64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST 143 (181)
Q Consensus 64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si 143 (181)
||+||||+.|++|+|+.+|+|++.+++.... ........++...... ......++...+..+++|...+|.++++..
T Consensus 190 ~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (289)
T COG0382 190 QDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPAC 266 (289)
T ss_pred cCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence 9999999999999999999999999999888 5555555555544331 246777888888999999999888877777
Q ss_pred HHHHHHHHHHHH
Q 048334 144 LSFYMFIWKASD 155 (181)
Q Consensus 144 ~sfY~fIWkLFy 155 (181)
..++..-..+-.
T Consensus 267 ~~~~~~~~~~~~ 278 (289)
T COG0382 267 FALFDVNLLLGL 278 (289)
T ss_pred HHHHHHhhHHHH
Confidence 776665554433
No 21
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.40 E-value=2.7e-12 Score=112.05 Aligned_cols=93 Identities=31% Similarity=0.483 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHH--HH---------HH----HHHHHH--HH---HH-hccCCChhhh
Q 048334 11 LLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMM--IL---------MG----LVYQLL--FY---IH-IQDVPDVDGD 69 (181)
Q Consensus 11 ~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~--~v---------~g----~i~~lg--~f---~h-~~DipDieGD 69 (181)
...++..++++++|| .||+|+|++|+....+.. .. .+ ....++ ++ .| .+|+||+|+|
T Consensus 116 ~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~~tg~~~~~~l~~a~~l~~~~~~~in~i~Die~D 193 (282)
T PRK12875 116 WPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNGLYILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPD 193 (282)
T ss_pred HHHHHHHHHHHHHHc--CCCccchhccHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 334456789999999 999999999997654311 00 01 011111 11 12 4699999999
Q ss_pred HHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 048334 70 REFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVG 105 (181)
Q Consensus 70 r~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g 105 (181)
|+.|+||+|+++|+|++.+++...-.++-...+.++
T Consensus 194 ~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 194 RAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888766555555544444
No 22
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.39 E-value=4.9e-11 Score=105.41 Aligned_cols=100 Identities=24% Similarity=0.252 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhh---hHHHH--HHHHH-------------------------------
Q 048334 6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFL---APTSM--MILMG------------------------------- 49 (181)
Q Consensus 6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~l---aa~~i--~~v~g------------------------------- 49 (181)
.+++++..-.+|.++++.|| .||+|+|++|+= .+.+. ..+.|
T Consensus 112 ~g~~~l~igl~g~~~~~~Yt--~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (317)
T PRK13387 112 TSWLLLVIGLICFAIGILYT--GGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAII 189 (317)
T ss_pred hcHHHHHHHHHHHHHhhhhc--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHH
Confidence 35666666778999999999 999999999941 11110 00100
Q ss_pred ----HHHHHHHH----HHhccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334 50 ----LVYQLLFY----IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS 107 (181)
Q Consensus 50 ----~i~~lg~f----~h~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 107 (181)
..++.|+. +|.+++||+|+||+.|.||+|+++|+|++.++-..+..++|+..+.....
T Consensus 190 ~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 190 AIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122221 35679999999999999999999999999999999999999976655443
No 23
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.37 E-value=1.4e-11 Score=107.80 Aligned_cols=129 Identities=21% Similarity=0.180 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHH------------HHH------HH-HHHHHHH----H--hcc
Q 048334 8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMI------------LMG------LV-YQLLFYI----H--IQD 62 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~------------v~g------~i-~~lg~f~----h--~~D 62 (181)
+..+....+++++..+|+ . +||+.++...-... +.| .+ ..++.+. | .-+
T Consensus 114 ~~~~~l~~~~~~~~~~Y~--~----~KR~t~~~~~~lg~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya 187 (289)
T PLN02809 114 NYSRILGASSLLLVFTYP--L----MKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYA 187 (289)
T ss_pred HHHHHHHHHHHHHHHHHh--H----HHhcCcchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445557788889998 2 99999864332110 111 11 1111111 2 127
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS 142 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s 142 (181)
.+|+|+||+.|++|+|+++|+|...+++. +..++++..+.+|.... .+..+. ++|++.+..+++|.+.+|.+|+++
T Consensus 188 ~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~--~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~ 263 (289)
T PLN02809 188 HQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNAG--LGWPYY-AGLAAAAGHLAWQIQTVDLSSRAD 263 (289)
T ss_pred HhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHhc--CcHHHH-HHHHHHHHHHHHHHHHcCCCCHHH
Confidence 89999999999999999999998888774 55556766666676543 334444 479999999999999999999886
Q ss_pred HHHH
Q 048334 143 TLSF 146 (181)
Q Consensus 143 i~sf 146 (181)
..+.
T Consensus 264 ~~~~ 267 (289)
T PLN02809 264 CNRK 267 (289)
T ss_pred HHHH
Confidence 5443
No 24
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.37 E-value=3.6e-11 Score=103.37 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=63.9
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN 139 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s 139 (181)
.+|++|+||||+.|++|+|+++|+|++.++......+.++.....+...... .. -.++..+....++++.+.+|.+|
T Consensus 177 i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g--~~-y~~~~~~~~~~l~~~~~~~~~~~ 253 (282)
T TIGR01475 177 IYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG--YI-ALLALILIGLILAYEHYIVDPGD 253 (282)
T ss_pred HHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HH-HHHHHHHHHHHHHHHHHHcCCCC
Confidence 4599999999999999999999999999998888888888877777655432 22 22455566677888888988888
Q ss_pred chhH
Q 048334 140 KAST 143 (181)
Q Consensus 140 k~si 143 (181)
+++.
T Consensus 254 ~~~~ 257 (282)
T TIGR01475 254 QSKI 257 (282)
T ss_pred HHHH
Confidence 7654
No 25
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.33 E-value=1.3e-10 Score=99.76 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHH-----------------HHH---H--hccCC
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLL-----------------FYI---H--IQDVP 64 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg-----------------~f~---h--~~Dip 64 (181)
++..+....++.+++++|| .|+||++.+....+....|.....| ++. + .+|+|
T Consensus 103 ~~~~~~l~~~~~~~~~~Ys-----~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~ 177 (279)
T PRK09573 103 NIYAFLIALLNSILLYLYA-----KDLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWSREIVKDIE 177 (279)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444557888899999 4899999875555443333211111 111 1 24999
Q ss_pred ChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hhhccCCCchhH
Q 048334 65 DVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRR-AQTVDLSNKAST 143 (181)
Q Consensus 65 DieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r-~~~vdl~sk~si 143 (181)
|+||||+.|++|+|+++|+|++.+++.....+.......-.. .. ..+..+.+..- ++...+.++ .+..+-+||+
T Consensus 178 D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~-~~~~~y~~~~~-~~~~~~l~~~~~~~~~~~~~-- 252 (279)
T PRK09573 178 DIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF-LG-IFGIYYLIVVI-ICDILFIIAMLILLKNPSIE-- 252 (279)
T ss_pred hhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHH-HHhHHHHHHHHHHHcCCCHH--
Confidence 999999999999999999999999887665555444432221 11 12223332222 222333333 3333222332
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 048334 144 LSFYMFIWKASDCYTTLNTSLFILC 168 (181)
Q Consensus 144 ~sfY~fIWkLFy~e~~~~~~~~~~~ 168 (181)
.++-..|.....-++-.++|.+|
T Consensus 253 --~~~~~~~~~~~~m~~g~~~~~~~ 275 (279)
T PRK09573 253 --GASKASKYLKIIMILGLIAFLIG 275 (279)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHh
Confidence 24455555555555666667766
No 26
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.32 E-value=7.1e-11 Score=103.08 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccchh---hhHHHH--HHHHH-------------H--HHHHHHH----HHhccCC
Q 048334 9 PLLLALIIWFLLGTAYSIQLPFLRWKGHPF---LAPTSM--MILMG-------------L--VYQLLFY----IHIQDVP 64 (181)
Q Consensus 9 ~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~---laa~~i--~~v~g-------------~--i~~lg~f----~h~~Dip 64 (181)
++++--.++++.+++|| .||+|+|++|. ..+.+. ..+.| + .++.|+. +|.+++|
T Consensus 110 ~~l~lg~~~~~~~~~Yt--~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~ 187 (284)
T TIGR00751 110 WFIALGALCIAAAITYT--VGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLR 187 (284)
T ss_pred HHHHHHHHHHHHhHhhc--CCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45555568999999999 99999999994 222111 01111 1 1122322 4567999
Q ss_pred ChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334 65 DVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS 107 (181)
Q Consensus 65 DieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 107 (181)
|+|+||+.|.||+|+++|+|++.++-..++..+|+..+.....
T Consensus 188 D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~ 230 (284)
T TIGR00751 188 DIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA 230 (284)
T ss_pred cchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877665543
No 27
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.28 E-value=3e-10 Score=97.37 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH-----------------HHHHHHH---H--HhccCC
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL-----------------VYQLLFY---I--HIQDVP 64 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~-----------------i~~lg~f---~--h~~Dip 64 (181)
+++.+....++.+++++|| .|+||.+++....+....|. +....+. . ..+|++
T Consensus 103 ~~~~~~~~~~~~~~~~~Y~-----~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~~~~~~~fl~~~~~~~~~~~~ 177 (277)
T PRK12883 103 NIEAFLFALGAYVLMFLYA-----WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLAICAFLVNVAREIMKDIE 177 (277)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hcccCCcchhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444557788899999 57888886433322222211 1111111 1 235999
Q ss_pred ChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhHH
Q 048334 65 DVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTL 144 (181)
Q Consensus 65 DieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si~ 144 (181)
|+||||+.|++|+|+++|+|++.++............. +.......+.-.... .+.+..+..+.+..+-+|+
T Consensus 178 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~-l~~~~~~~~~y~~~~---~~~~~~l~~~~~~~~~~~~---- 249 (277)
T PRK12883 178 DIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASF-LPVKAGIGLGYLPII---IVDAIILYAAYLVLRNPDR---- 249 (277)
T ss_pred hhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHH-HHHHHcccHHHHHHH---HHHHHHHHHHHHHHhCcch----
Confidence 99999999999999999999998876554322222211 111111111111111 1233344444444433333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 048334 145 SFYMFIWKASDCYTTLNTSLFILC 168 (181)
Q Consensus 145 sfY~fIWkLFy~e~~~~~~~~~~~ 168 (181)
+.|.-..|+|...-++-.+.|.+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~ 273 (277)
T PRK12883 250 ETAHKGQKLLKIAIFLAVISFLLG 273 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788888777777777776
No 28
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.21 E-value=4.6e-10 Score=96.87 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=55.8
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN 139 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s 139 (181)
+.+++|+|+|++.|++|+|+++|+|++.+++.......++..+. +...... ... -.++++.+..++++...+|.+|
T Consensus 184 ~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~--~~~-y~~~~~~~~~l~~~~~~~~~~~ 259 (285)
T PRK12847 184 IYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSLH--NIF-YLAILAAAGIFYYQYKLLDFDN 259 (285)
T ss_pred HHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcCc--HHH-HHHHHHHHHHHHHHHHHhCCCC
Confidence 34999999999999999999999999999888776666655443 3322211 111 1234445567788888888777
Q ss_pred chhH
Q 048334 140 KAST 143 (181)
Q Consensus 140 k~si 143 (181)
+++.
T Consensus 260 ~~~~ 263 (285)
T PRK12847 260 PANC 263 (285)
T ss_pred HHHH
Confidence 6543
No 29
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.09 E-value=6.5e-09 Score=89.96 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHH------------HHHH------HHHHHHHHH----H--hcc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMM------------ILMG------LVYQLLFYI----H--IQD 62 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~------------~v~g------~i~~lg~f~----h--~~D 62 (181)
++.......+++++++.|| . +||+.++...... .+.| .+..++.+. | ..+
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~--~----~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a 181 (281)
T TIGR01474 108 NPLTILLGVASLALVATYP--F----MKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYA 181 (281)
T ss_pred hHHHHHHHHHHHHHHHHhc--h----hcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555568888999998 2 8887765322110 0111 111222221 2 249
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS 142 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s 142 (181)
++|+|+||+.|+||+|+++|+|+..+........... ..+.+.... .+.... ++-.+....+.++...+|.+|+++
T Consensus 182 ~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (281)
T TIGR01474 182 MQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILL-LALAGLIAG--LGPVYY-LGLAAAALLLIRQIATLDIRDPEN 257 (281)
T ss_pred HhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999998865544433333333 333443332 223333 333344555666666777666654
Q ss_pred H
Q 048334 143 T 143 (181)
Q Consensus 143 i 143 (181)
.
T Consensus 258 ~ 258 (281)
T TIGR01474 258 C 258 (281)
T ss_pred H
Confidence 3
No 30
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.09 E-value=3.2e-09 Score=92.60 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=60.5
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN 139 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s 139 (181)
..|++|.|+||+.|+||+|+++|+|++.+++..+..+.++..+..+...... .... .+-.+.+..+.+|.+.+|.+|
T Consensus 178 i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~--~~y~-~~~~~~~~~l~~~~~~~~~~~ 254 (284)
T PRK12888 178 IYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFG--ALWW-IGLAITAGAFAYEHAIVSPTD 254 (284)
T ss_pred HHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHHHHHHHHHHHHHcCccC
Confidence 4599999999999999999999999998877776666666666666554332 2222 233466777788988999888
Q ss_pred chhH
Q 048334 140 KAST 143 (181)
Q Consensus 140 k~si 143 (181)
++..
T Consensus 255 ~~~~ 258 (284)
T PRK12888 255 LSRV 258 (284)
T ss_pred HHHH
Confidence 7754
No 31
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.05 E-value=6.3e-09 Score=91.76 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=52.9
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLS 138 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~ 138 (181)
..|++|+|+||+.|+||+|+++| +++..++..+..+.-+.....|..... +.... .+-.+....+.+|.+.++.+
T Consensus 196 iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l--g~~y~-~~~~~~~~~l~~~~~~~~~~ 270 (300)
T PRK13106 196 YNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL--GPIAI-AATILHGLIMAYAYYLASKK 270 (300)
T ss_pred HHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCCc
Confidence 35999999999999999999999 888888777666666666666654432 22332 23335556666777776655
No 32
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.04 E-value=1.5e-08 Score=88.61 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=53.5
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN 139 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s 139 (181)
..+++|.|+||+.|++|+|+++|++++.+++.....+.+......+..... +....+.. ++....+.+|.+.++.+|
T Consensus 181 ~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~-~~~~~~~l~~~~~~~~~~ 257 (291)
T PRK12886 181 LYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL--GPWFLAGL-AVTGILLLYEHWLLRGGD 257 (291)
T ss_pred HHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence 458999999999999999999999999988877666666666655554322 22333222 233333346777777676
Q ss_pred c
Q 048334 140 K 140 (181)
Q Consensus 140 k 140 (181)
+
T Consensus 258 ~ 258 (291)
T PRK12886 258 L 258 (291)
T ss_pred h
Confidence 4
No 33
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.03 E-value=1.2e-08 Score=90.60 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=54.2
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA 141 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~ 141 (181)
+.+|+|+||+.|++|+|+++|++++..++.....+.-+..+..|......+.-......-...+..+.+|.+.+|-++++
T Consensus 193 a~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~ 272 (300)
T PRK12876 193 AIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLIDKKKST 272 (300)
T ss_pred HHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCchH
Confidence 69999999999999999999999987777766666555555556554432211112222222233345665666655555
Q ss_pred hHHHHHH
Q 048334 142 STLSFYM 148 (181)
Q Consensus 142 si~sfY~ 148 (181)
....|++
T Consensus 273 ~~~~~F~ 279 (300)
T PRK12876 273 LEQKFFL 279 (300)
T ss_pred HHHHHHH
Confidence 4444443
No 34
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.01 E-value=1.5e-08 Score=87.53 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=52.8
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK 140 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk 140 (181)
.+++|.|+||+.|++|+|+++|+|++.+++.... +........+..... +.... ++-.+....+.++.+.+|.+|+
T Consensus 182 ~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~y~-~~~~~~~~~~~~~~~~~~~~~~ 257 (282)
T PRK12848 182 YAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQL-ATLALLAWAGWLLGL--GWAYY-WGLLVAAALFVYQQKLIRDRER 257 (282)
T ss_pred HHhccHhhHHHcCCccccHHhccccHHHHHHHHH-HHHHHHHHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHcCCCCH
Confidence 3799999999999999999999999887764333 333333334443322 23333 3344556667777888888877
Q ss_pred hhH
Q 048334 141 AST 143 (181)
Q Consensus 141 ~si 143 (181)
++.
T Consensus 258 ~~~ 260 (282)
T PRK12848 258 EAC 260 (282)
T ss_pred HHH
Confidence 654
No 35
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=98.96 E-value=3.5e-08 Score=86.31 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=54.5
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN 139 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s 139 (181)
..+++|+|+||+.|++|+|+++|++++.++......+..+..+..+..... .....++-.+.+..+++|.+.++.++
T Consensus 186 ~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 262 (291)
T PRK12874 186 LYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDF 262 (291)
T ss_pred HHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 459999999999999999999999998877654444444443333433222 22333455566677778877776555
Q ss_pred chhHHH
Q 048334 140 KASTLS 145 (181)
Q Consensus 140 k~si~s 145 (181)
++....
T Consensus 263 ~~~~~~ 268 (291)
T PRK12874 263 KKIDKA 268 (291)
T ss_pred hHHHHH
Confidence 554333
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.94 E-value=1.1e-08 Score=89.17 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=55.0
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhc--cCC
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTV--DLS 138 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~v--dl~ 138 (181)
.+++|+|+|++.|++|+|+++|+|+..+++.... +.-.....+|..... +.... .+-.+.+..+.+|...+ |.+
T Consensus 186 ~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~y~-~~~~~~~~~l~~~~~~~~~~~~ 261 (290)
T PRK12870 186 YAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA-LTVGFLAILGVLLEL--HLPFW-IGLAIAAVLWARQYRRLRQANL 261 (290)
T ss_pred HHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH-HHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence 4999999999999999999999999888777322 222233344444332 22222 23334455666777777 777
Q ss_pred CchhH-HHHHHHHH
Q 048334 139 NKAST-LSFYMFIW 151 (181)
Q Consensus 139 sk~si-~sfY~fIW 151 (181)
|++.. +-|.+..|
T Consensus 262 ~~~~~~~~F~~n~~ 275 (290)
T PRK12870 262 PPLAYGQLFLQNVW 275 (290)
T ss_pred ChHHHHHHHHHhhH
Confidence 77544 44444444
No 37
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.94 E-value=5.3e-08 Score=86.12 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=51.7
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA 141 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~ 141 (181)
+++|+|+||+.|++|+|+++|++++.++........... .+.+...... .... ++-..+...+.+|...+|.+|++
T Consensus 213 a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~-~l~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 288 (314)
T PRK12878 213 AHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM-GLAFWLAGVP--LLAL-LGLLAAAAHLAWQIARLDIDDPD 288 (314)
T ss_pred HhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH-HHHHHHhcCc--HHHH-HHHHHHHHHHHHHHHHcccCChH
Confidence 999999999999999999999999988775554444333 3333332221 2221 12222333466777787877776
Q ss_pred hHHHHH
Q 048334 142 STLSFY 147 (181)
Q Consensus 142 si~sfY 147 (181)
+-..++
T Consensus 289 ~~~~~F 294 (314)
T PRK12878 289 QCLRLF 294 (314)
T ss_pred HHHHHH
Confidence 543333
No 38
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=98.94 E-value=2.8e-08 Score=85.96 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=48.4
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK 140 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk 140 (181)
.+++|.|.|++.|+||+|+++|+|++.++......+.-......+. ...+....++.-...+.++..+.+.++-+|+
T Consensus 179 l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~---~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~ 255 (279)
T PRK12869 179 LALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL---YYIGLIGLILVAILSAALMATSIRALLNPTK 255 (279)
T ss_pred HHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHHhhCCCh
Confidence 3778999999999999999999999987765544332222222222 1233444444444455566666666554443
No 39
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=98.94 E-value=2.4e-08 Score=87.70 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=61.2
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA 141 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~ 141 (181)
|.+|+|+||+.|+||+|+++|+++..+++.....+.-...+..|.... +..+ -++-++.+..+.+|.+.+|.+|++
T Consensus 180 a~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~~~y-~~~~~~~~~~l~~q~~~~~~~~~~ 255 (286)
T PRK12895 180 VIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---TLWY-LAALIIIYTLVIYQHLIIDPRNPI 255 (286)
T ss_pred HhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---hHHH-HHHHHHHHHHHHHHHHHhcCCCHH
Confidence 999999999999999999999999988776555555555555554432 2222 356667778888999999999988
Q ss_pred hH-HHHH
Q 048334 142 ST-LSFY 147 (181)
Q Consensus 142 si-~sfY 147 (181)
+. ..|+
T Consensus 256 ~~~~~~F 262 (286)
T PRK12895 256 NKRMSFF 262 (286)
T ss_pred HHHHHHH
Confidence 77 4433
No 40
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=98.78 E-value=3.6e-07 Score=78.65 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=47.1
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLS 138 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~ 138 (181)
..+|.|.||+.|++|+|+++|+|++.+++.......-....+.+.... .+....+.+-.+.+..+.++.+.++.+
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~ 253 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRDP 253 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999999999999999999887666554443333333333221 223444333344455566666666544
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=98.68 E-value=1.4e-06 Score=76.67 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=53.2
Q ss_pred hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN 139 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s 139 (181)
.+|++|+|||++.|+||+|+++|++++.++......+..+..+ +... ..++......-.+.+..+.+|.+..+-+|
T Consensus 194 ~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (297)
T PRK12871 194 LNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKS 269 (297)
T ss_pred HHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3499999999999999999999999998765555444444333 2222 22333233333556667778888766666
Q ss_pred chhH
Q 048334 140 KAST 143 (181)
Q Consensus 140 k~si 143 (181)
|++.
T Consensus 270 ~~~~ 273 (297)
T PRK12871 270 QDAG 273 (297)
T ss_pred HHHH
Confidence 6543
No 42
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=98.59 E-value=2.9e-06 Score=74.01 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=28.8
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHH
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAY 98 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y 98 (181)
.++|.|-||+.|+||+|+++|+|++.+++.....+.-
T Consensus 188 ~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~ 224 (296)
T PRK04375 188 AIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLV 224 (296)
T ss_pred HHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence 3677777899999999999999998876655444433
No 43
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=98.49 E-value=6.1e-06 Score=73.85 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH------------------------hcc
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIH------------------------IQD 62 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h------------------------~~D 62 (181)
+|.+++-=.++.+.|+.|. -+|.+..+.|+=.-.|-.+-.-+++..++|.+ .+.
T Consensus 120 ~~~~l~lG~l~~~~g~~YT--gGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNN 197 (303)
T COG1575 120 DWLVLLLGLLCIAAGILYT--GGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANN 197 (303)
T ss_pred hhHHHHHHHHHHHheeeec--cCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3443444458999999999 89999999997433332211111111222221 248
Q ss_pred CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048334 63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSS 109 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~ 109 (181)
+-|+|-|++.|-+|+|+++|++++..+=..++..+|+..++.-+...
T Consensus 198 irDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~ 244 (303)
T COG1575 198 LRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGL 244 (303)
T ss_pred cccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988776544433
No 44
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.39 E-value=5.7e-06 Score=73.28 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=55.4
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC--
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN-- 139 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s-- 139 (181)
++.|.|+|++.|++|+|++.|++ +..+...+-.+.-+....+|..... +..+. ++-++.+..+.+|.+.+|.++
T Consensus 191 A~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l--~~~y~-~~~~~~~~~l~~~~~~~~~~~~~ 266 (294)
T PRK12873 191 AMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQV--GFIFW-PFWLIASIGMQRDILKLFPEKQS 266 (294)
T ss_pred HHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCcCccc
Confidence 78899999999999999999974 4454444444444444455554433 22332 233444566778888888876
Q ss_pred -chhHHHHHHHHH
Q 048334 140 -KASTLSFYMFIW 151 (181)
Q Consensus 140 -k~si~sfY~fIW 151 (181)
++-..-|.+..|
T Consensus 267 ~~~c~~~F~~n~~ 279 (294)
T PRK12873 267 IKTIGNHFSNQVI 279 (294)
T ss_pred HHHHHHHHHhccH
Confidence 334466666665
No 45
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.05 E-value=0.00025 Score=62.78 Aligned_cols=30 Identities=23% Similarity=0.125 Sum_probs=26.1
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHH
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGV 91 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~ 91 (181)
++.|.|.|++.|++|+|++.|+|++.+...
T Consensus 191 ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 191 AIFRFNDYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence 678888889999999999999999887443
No 46
>PRK13592 ubiA prenyltransferase; Provisional
Probab=97.85 E-value=8.6e-05 Score=66.43 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=33.6
Q ss_pred ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 048334 61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAI 102 (181)
Q Consensus 61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i 102 (181)
+|+|| |||++. .+|+|+++|+|++..++..+..+..+...
T Consensus 195 KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~ 234 (299)
T PRK13592 195 RKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTNF 234 (299)
T ss_pred HhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHhh
Confidence 49999 899965 99999999999999999988766655433
No 47
>PLN02776 prenyltransferase
Probab=96.63 E-value=0.22 Score=45.45 Aligned_cols=102 Identities=13% Similarity=-0.020 Sum_probs=51.2
Q ss_pred CCChhhhHHcCCccchhhh--cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334 63 VPDVDGDREFGIQTLSVII--GKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK 140 (181)
Q Consensus 63 ipDieGDr~~Gi~Tlpv~l--G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk 140 (181)
..|-|-|++-|++.+|+.- |++....+......+.-+..+..+.-.. ...+.+.+-++-+..+++.-+.+.-+|+
T Consensus 173 ~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~---~~~~~~~a~~l~~~~l~~~~~~~~~~~~ 249 (341)
T PLN02776 173 YMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT---SSPFALEAALLTAYLAASAASFYREPTN 249 (341)
T ss_pred HHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3444568899999999976 4555555554443333222222222111 2344445555555556666666533332
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhc
Q 048334 141 ASTLSFYMFIWKASDCYTTLNTSL-FILCVEKVMK 174 (181)
Q Consensus 141 ~si~sfY~fIWkLFy~e~~~~~~~-~~~~~~~~~~ 174 (181)
+ ...|+|+.-..-...+ ..++++++-+
T Consensus 250 ~-------~ar~~F~~Sl~yL~~l~~~~~~~~~~~ 277 (341)
T PLN02776 250 A-------NARKMFHGSLLYLPAFMALLLLHRVPN 277 (341)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 2355555544444333 3556666543
No 48
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=94.42 E-value=0.16 Score=45.43 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=47.3
Q ss_pred HHhccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048334 58 IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSF 110 (181)
Q Consensus 58 ~h~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~ 110 (181)
+|.+.-.|.|.||+.||-|+++.+|+.....+-..++.++|....+.+.-.+-
T Consensus 246 lhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si 298 (359)
T KOG4581|consen 246 LHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSI 298 (359)
T ss_pred hccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999988886654
No 49
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=91.51 E-value=0.39 Score=43.70 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=57.0
Q ss_pred CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334 64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST 143 (181)
Q Consensus 64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si 143 (181)
.|-+-|-+-|+++.+.++|.+.=.|++. +-..--..-...|+.+.+.| +-++. -...+..|-.|-..||+.||+..
T Consensus 247 QDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~-pyy~~--lg~~~~~L~~~i~~vdiDnp~dC 322 (353)
T KOG1381|consen 247 QDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTW-PYYAA--LGAVAARLGSQIYKVDIDNPSDC 322 (353)
T ss_pred ccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCc-hHHHH--HHHHHHHHHhheeeeecCChHHH
Confidence 5677799999999999999886656543 22222222334577777766 44433 55667888899999999998865
Q ss_pred HHHH-HHHHH
Q 048334 144 LSFY-MFIWK 152 (181)
Q Consensus 144 ~sfY-~fIWk 152 (181)
..++ ..+|.
T Consensus 323 ~k~f~sN~nt 332 (353)
T KOG1381|consen 323 WKKFKSNSNT 332 (353)
T ss_pred HHHHHhcCcc
Confidence 4443 33443
No 50
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=79.74 E-value=42 Score=29.51 Aligned_cols=166 Identities=14% Similarity=0.010 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHhccCCCh-----hhhHHcCCccchh-hhc
Q 048334 9 PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDV-----DGDREFGIQTLSV-IIG 82 (181)
Q Consensus 9 ~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h~~DipDi-----eGDr~~Gi~Tlpv-~lG 82 (181)
..+.+-++.+.+|.++.. -. . +-++....++.. .++..+.+.-. .||.-|- +.||..+.|.++- .+-
T Consensus 3 ~tl~~s~~pv~lG~ala~--~~-~-~f~~~~~ll~~~--~~~~~q~~~N~-~NDy~D~~~G~D~~~~~~~~r~i~~g~is 75 (284)
T TIGR00751 3 KTLPLAIAPIVAGTALAA--WL-H-AFVWLVALLALA--TAVLLQILSNY-ANDYGDGIKGSDTDDRIGPLRGVQKGLIT 75 (284)
T ss_pred chHHHHHHHHHHHHHHHH--Hc-C-CccHHHHHHHHH--HHHHHHHHHHH-HHhHHHHhcCCChhhccCCcchhcCCCCC
Confidence 344455677778888772 11 1 122222322322 12222322111 1344443 1244444454432 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHhhhccCCCch--hHHHHHHH----HHHHH
Q 048334 83 KEKVFWLGVYMMLTAYGAAILVGASSSFLLS--KLVTIISHSILAFILWRRAQTVDLSNKA--STLSFYMF----IWKAS 154 (181)
Q Consensus 83 ~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~--~~~~~~~H~ll~~~L~~r~~~vdl~sk~--si~sfY~f----IWkLF 154 (181)
.|.+..++..++.++-+..+......+..+. ..+..++-+..+....|.....-++.+. ++.+|-.| ..--+
T Consensus 76 ~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~ 155 (284)
T TIGR00751 76 PREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQ 155 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHH
Confidence 5677777776666665555554443321000 0233344444444455665544455554 66666554 23334
Q ss_pred Hhh-------hhHHHHHHHHHHHHhhcccCccCC
Q 048334 155 DCY-------TTLNTSLFILCVEKVMKDSNTCDR 181 (181)
Q Consensus 155 y~e-------~~~~~~~~~~~~~~~~~~~~~~~~ 181 (181)
|++ .++.++...+.+.-+|--.|.||.
T Consensus 156 yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~ 189 (284)
T TIGR00751 156 YLQAHRVDWVGILPAVATGLLACAVLNINNLRDI 189 (284)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 432 233344345556778888888884
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=77.88 E-value=5 Score=35.72 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHH
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMI 46 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~ 46 (181)
+|...+.+...+++.++|| +|+||.|+++.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~d~l~va~ 148 (295)
T PRK12324 114 SPKLALVLLVYLVLNLAYS-----FKLKHQPVLDVFCIAS 148 (295)
T ss_pred HHHHHHHHHHHHHHHHHhh-----HHhcCCchhhHHHHHH
Confidence 3444444567788899999 7999999988777643
No 52
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=77.35 E-value=51 Score=29.09 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=26.5
Q ss_pred hccCCChhhhHHcCCccchhh---hcHHHHHHHHHHHHHHHHHHHHHH
Q 048334 60 IQDVPDVDGDREFGIQTLSVI---IGKEKVFWLGVYMMLTAYGAAILV 104 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~---lG~~~~~~l~~~ll~~~y~~~i~~ 104 (181)
.||.-|.|-|++.+ ++=|+. +.++.+..++..++.++-+.++..
T Consensus 73 ~NDy~D~d~D~~~~-~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l 119 (306)
T TIGR02056 73 INDFYDRDIDAINE-PYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119 (306)
T ss_pred HHhHhhhhhhccCC-CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888898776 334443 456666666665555544444433
No 53
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=61.71 E-value=56 Score=23.57 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 048334 82 GKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFIL 128 (181)
Q Consensus 82 G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L 128 (181)
|+|++-.+...++.+.-+.+.++|....+.-....+.++-.++..++
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv 51 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLV 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999987766544444444444444443
No 54
>PF15192 TMEM213: TMEM213 family
Probab=61.18 E-value=5.3 Score=29.76 Aligned_cols=13 Identities=54% Similarity=1.009 Sum_probs=10.3
Q ss_pred HHHHHHHHhhccc
Q 048334 164 LFILCVEKVMKDS 176 (181)
Q Consensus 164 ~~~~~~~~~~~~~ 176 (181)
+..|||+|+||-.
T Consensus 61 LILLCvdKlmKLt 73 (82)
T PF15192_consen 61 LILLCVDKLMKLT 73 (82)
T ss_pred HHHHHHHHHhccC
Confidence 4568999999943
No 55
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=60.02 E-value=1.1e+02 Score=26.33 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=12.6
Q ss_pred hccCCChhhhHHcCC
Q 048334 60 IQDVPDVDGDREFGI 74 (181)
Q Consensus 60 ~~DipDieGDr~~Gi 74 (181)
.||+-|.|=||+.-=
T Consensus 66 iND~~D~eiD~~n~r 80 (289)
T COG0382 66 INDLADREIDRINPR 80 (289)
T ss_pred HHHHhhhhccCCCCC
Confidence 479999999998754
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=58.90 E-value=1.3e+02 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhcccCccCC
Q 048334 161 NTSLFILCVEKVMKDSNTCDR 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ 181 (181)
.++.+.+.+..+|--.|.||.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~ 214 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDL 214 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccc
Confidence 466677788899999999984
No 57
>PRK08238 hypothetical protein; Validated
Probab=55.75 E-value=20 Score=33.93 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHH
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSM 44 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i 44 (181)
++..+..++..+++..+|| +++||.+++...++
T Consensus 294 ~~~~~~~~~~~~~~~~~Ys-----~~lKr~~~~~~~~l 326 (479)
T PRK08238 294 GPAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTL 326 (479)
T ss_pred hHHHHHHHHHHHHHHHHhh-----HHhcCCccccchHH
Confidence 4455555667788889999 89999998766554
No 58
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=52.77 E-value=1.5e+02 Score=25.47 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=19.3
Q ss_pred hccCCChhhhHHcCCccchhh---hcHHHHHHHHHH
Q 048334 60 IQDVPDVDGDREFGIQTLSVI---IGKEKVFWLGVY 92 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~---lG~~~~~~l~~~ 92 (181)
.||.-|.|-|++.+ ++=|+. +-+|.+..++..
T Consensus 57 ~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~ 91 (283)
T TIGR01476 57 INDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLV 91 (283)
T ss_pred HHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHH
Confidence 47888888899765 344443 334555555443
No 59
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=50.74 E-value=1.8e+02 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=22.6
Q ss_pred hccCCChhhhHHcCCccchh---hhcHHHHHHHHHHHHHH
Q 048334 60 IQDVPDVDGDREFGIQTLSV---IIGKEKVFWLGVYMMLT 96 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv---~lG~~~~~~l~~~ll~~ 96 (181)
.||.-|.|-||+.+ ++=|+ ++.++.+..++..++.+
T Consensus 84 ~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~ 122 (314)
T PRK07566 84 LNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVL 122 (314)
T ss_pred HhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHH
Confidence 47999999999765 44444 34555566655544444
No 60
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=47.83 E-value=2.1e+02 Score=25.60 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch--hHHHHH----HHHHHHHHh
Q 048334 83 KEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA--STLSFY----MFIWKASDC 156 (181)
Q Consensus 83 ~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~--si~sfY----~fIWkLFy~ 156 (181)
+|.+.+++...+.++-+..+......+ ..+..++-+..+....|.....-++.+. ++.+|= .-..-.+|+
T Consensus 92 ~~~v~~~~~~~~~~a~~~Gl~L~~~~g----~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv 167 (304)
T PRK07419 92 KSLVFWLANLFLLLGLLGILAIALQSD----WTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYS 167 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----HHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 566777766655555444444433222 2333333333334444544433333322 333332 223344444
Q ss_pred h-------hhHHHHHHHHHHHHhhcccCccCC
Q 048334 157 Y-------TTLNTSLFILCVEKVMKDSNTCDR 181 (181)
Q Consensus 157 e-------~~~~~~~~~~~~~~~~~~~~~~~~ 181 (181)
+ -.+..+..-+.+..+|--.|.||+
T Consensus 168 ~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~ 199 (304)
T PRK07419 168 QTPSWSLIPLAASIILGLATSLILFCSHFHQV 199 (304)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3 233344445678889988999985
No 61
>PLN00012 chlorophyll synthetase; Provisional
Probab=46.49 E-value=2.4e+02 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=22.8
Q ss_pred HhccCCChhhhHHcCCccchhhhc---HHHHHHHHHHHHHH
Q 048334 59 HIQDVPDVDGDREFGIQTLSVIIG---KEKVFWLGVYMMLT 96 (181)
Q Consensus 59 h~~DipDieGDr~~Gi~Tlpv~lG---~~~~~~l~~~ll~~ 96 (181)
-.||.-|.|-|++.+ +.=|+.=| ++.+.....+++.+
T Consensus 141 ~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~ 180 (375)
T PLN00012 141 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLG 180 (375)
T ss_pred HHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence 357999999999886 45555444 44444444443333
No 62
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=43.21 E-value=1.9e+02 Score=24.11 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=14.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHH
Q 048334 80 IIGKEKVFWLGVYMMLTAYGAA 101 (181)
Q Consensus 80 ~lG~~~~~~l~~~ll~~~y~~~ 101 (181)
++|+|+...++..+..++.+..
T Consensus 63 r~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 63 KFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HhCchHHHHHHHHHHHHHHHHH
Confidence 4588888777776666655443
No 63
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=41.44 E-value=2.5e+02 Score=24.75 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHhccCCChhhhHHcCCcc
Q 048334 8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQT 76 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h~~DipDieGDr~~Gi~T 76 (181)
|..+...+...+.|+++..+-++-.+ +-.+++.++.+. +..|+.. .-.||+-|.|-||...-|.
T Consensus 17 P~~~~~~~~p~l~G~~lA~~~~~~~~-~~~~~~ll~~~~---i~~Nl~~-y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 17 PRFWLYLAGPVVVGVAYAADSVADLF-SPAAVALFAYFL---FPANVFL-YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred ccchHHHHHHHHHHHHHHhccCcccc-cHHHHHHHHHHH---HHHHHHH-hcchhhhhhhccccCCCcc
Confidence 33344445566667666532333111 112222222222 2223322 2358999999898876654
No 64
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=38.17 E-value=2.8e+02 Score=24.39 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch--hHHHHHHH----HHHHHHh
Q 048334 83 KEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA--STLSFYMF----IWKASDC 156 (181)
Q Consensus 83 ~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~--si~sfY~f----IWkLFy~ 156 (181)
++.+...+..++.++.+..+...... ...+..++-..++....+.....-++.+. ++.+|--+ ..--+|+
T Consensus 79 ~~~v~~~~~~~~~ia~~~g~~L~~~~----~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv 154 (285)
T TIGR02235 79 RSLVFWLANFFLLIGLVGIAALSWRW----QITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYA 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 35555565555555444444333322 23334444444444455554443344322 44333222 3334454
Q ss_pred h-------hhHHHHHHHHHHHHhhcccCccCC
Q 048334 157 Y-------TTLNTSLFILCVEKVMKDSNTCDR 181 (181)
Q Consensus 157 e-------~~~~~~~~~~~~~~~~~~~~~~~~ 181 (181)
+ .++.++..-+.++.+|--.|.||+
T Consensus 155 qt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~ 186 (285)
T TIGR02235 155 QSQSFSLIPWKASILVGLATTLILFCSHFHQV 186 (285)
T ss_pred hCCcCcHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3 233344455778899999999985
No 65
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=31.64 E-value=3.5e+02 Score=23.62 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 048334 8 PPLLLALIIWFLLGTAYS 25 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YS 25 (181)
|+.+.+..++..+|+++.
T Consensus 13 p~tl~~s~~~v~lG~a~a 30 (296)
T PRK05951 13 PWSFVMTAIVAFFSIAYG 30 (296)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566777777766
No 66
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=30.30 E-value=3.8e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=24.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 048334 79 VIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSIL 124 (181)
Q Consensus 79 v~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll 124 (181)
-++|+|++..++..+..+..+......-.......+.+..+++...
T Consensus 68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 113 (412)
T TIGR02332 68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGF 113 (412)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence 4688899887777666665555432211111123345555555543
No 67
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=29.25 E-value=62 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=19.0
Q ss_pred CCcccccchh---hhHHHHHHHHHHHHHHHHHH
Q 048334 29 PFLRWKGHPF---LAPTSMMILMGLVYQLLFYI 58 (181)
Q Consensus 29 PPlRlKr~p~---laa~~i~~v~g~i~~lg~f~ 58 (181)
||+|+||++- +.+..++.....+...|+|.
T Consensus 16 ~pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~ 48 (130)
T PF06212_consen 16 PPVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYK 48 (130)
T ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4599999983 45555555555555566663
No 68
>PRK10133 L-fucose transporter; Provisional
Probab=26.50 E-value=4.8e+02 Score=23.48 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=39.4
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhhhccCCCch-hHHHHHHHHHH
Q 048334 77 LSVIIGKEKVFWLGVYMMLTAYGAAILVGASSS---FLLSKLVTIISHSILAFILWRRAQTVDLSNKA-STLSFYMFIWK 152 (181)
Q Consensus 77 lpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~---~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~-si~sfY~fIWk 152 (181)
+.-++|+|++..++..+..++.+.....+...+ ......+...++...-...-........+++. ...++++..|.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 344679999999988887777655432222111 12234455566666544333222222222222 24567776654
Q ss_pred H
Q 048334 153 A 153 (181)
Q Consensus 153 L 153 (181)
+
T Consensus 164 ~ 164 (438)
T PRK10133 164 F 164 (438)
T ss_pred H
Confidence 3
No 69
>PLN02922 prenyltransferase
Probab=26.47 E-value=4.7e+02 Score=23.40 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhcccCccCC
Q 048334 160 LNTSLFILCVEKVMKDSNTCDR 181 (181)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (181)
+..+...+.+..+|--.|.||+
T Consensus 192 l~slp~gll~~~iL~~Nn~rD~ 213 (315)
T PLN02922 192 SASVLVGLTTTLILFCSHFHQI 213 (315)
T ss_pred HHHHHHHHHHHHHHHHccCcch
Confidence 4466677788899999999984
No 70
>PRK08319 cobalt transport protein CbiM; Validated
Probab=26.46 E-value=4e+02 Score=22.62 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCccc------ccchhhhHHHHHHHHHHHHHHHHHHHhccCCChhh--hHHcCCccch
Q 048334 7 SPPLLLALIIWFLLGTAYSIQLPFLRW------KGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDG--DREFGIQTLS 78 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YSv~~PPlRl------Kr~p~laa~~i~~v~g~i~~lg~f~h~~DipDieG--Dr~~Gi~Tlp 78 (181)
|++..++..+.......|+ +.-.|| +|+|+.+..+.+..-. .+-.+|-..| =.-.|..+++
T Consensus 9 ~~~~~~~~~~i~~~~~~~a--~~~~~~~~~~~~~~~p~~~~~~a~~f~~---------~~i~~pi~~G~s~Hllg~~l~~ 77 (224)
T PRK08319 9 PPKWAAFWWLLSLPFVVYG--LRRLRKIVKEDPEQKPLLALAGAFIFVL---------SALKIPSVTGSCSHPTGTGLGA 77 (224)
T ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHhcccHhhhHHHHHHHHHHHHH---------HHhcCCCCCCcchhHhHHHHHH
Confidence 4555555544455556666 433454 3566664444322111 1112332222 2345778899
Q ss_pred hhhcHHHHHHH
Q 048334 79 VIIGKEKVFWL 89 (181)
Q Consensus 79 v~lG~~~~~~l 89 (181)
+.+|.+.+...
T Consensus 78 lllGp~~a~l~ 88 (224)
T PRK08319 78 ILFGPAVTAVL 88 (224)
T ss_pred HHHhHHHHHHH
Confidence 99997755533
No 71
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.51 E-value=30 Score=23.32 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 048334 8 PPLLLALIIWFLLGTAYS 25 (181)
Q Consensus 8 ~~l~~~~~~~l~lg~~YS 25 (181)
..++.+.++|.++|++++
T Consensus 22 l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566678888888888
No 72
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=25.27 E-value=4.3e+02 Score=22.54 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=24.3
Q ss_pred hccCCChhhhHHcCCccchhhhc---HHHHHHHHHHHHHHH
Q 048334 60 IQDVPDVDGDREFGIQTLSVIIG---KEKVFWLGVYMMLTA 97 (181)
Q Consensus 60 ~~DipDieGDr~~Gi~Tlpv~lG---~~~~~~l~~~ll~~~ 97 (181)
.||+-|.|-||+.. +.=|+.=| ++.+..++..+..++
T Consensus 57 ~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 57 INDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 57999999999765 55566555 555555555554443
No 73
>PRK09848 glucuronide transporter; Provisional
Probab=24.50 E-value=4.8e+02 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=14.6
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHH
Q 048334 79 VIIGKEKVFWLGVYMMLTAYGAA 101 (181)
Q Consensus 79 v~lG~~~~~~l~~~ll~~~y~~~ 101 (181)
-+.|+|++..++..+..++++..
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLF 311 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHH
Confidence 35677777777776666655443
No 74
>COG3235 Predicted membrane protein [Function unknown]
Probab=23.78 E-value=1.7e+02 Score=25.47 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=64.8
Q ss_pred CCccchhhhcHHHHHHHHHHHH-HHHHHHHHHHHHhhh-----------------------------------hhHHHHH
Q 048334 73 GIQTLSVIIGKEKVFWLGVYMM-LTAYGAAILVGASSS-----------------------------------FLLSKLV 116 (181)
Q Consensus 73 Gi~Tlpv~lG~~~~~~l~~~ll-~~~y~~~i~~g~~~~-----------------------------------~~~~~~~ 116 (181)
++++.+.++|-+.+.+++..++ ..|-.+..-.|+.-+ .-++...
T Consensus 69 a~t~vtlm~gw~~A~~l~l~~~l~lcLlg~~s~~A~p~n~~L~~~lPaLI~~~~~~~~~~rlPrNiFVfIFv~GFf~aa~ 148 (223)
T COG3235 69 AVTLVTLMLGWSAALWLALLLMLPLCLLGAQSWGAYPPNNALVLILPALIVNRLSRMLVNRLPRNIFVFIFVNGFFAAAA 148 (223)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHhhCCCceEEEeeeccchhhHH
Confidence 5677888888888877765443 233333322222111 1245567
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHhhhhHH-HHHHHHHH
Q 048334 117 TIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLN-TSLFILCV 169 (181)
Q Consensus 117 ~~~~H~ll~~~L~~r~~~vdl~sk~si~sfY~fIWkLFy~e~~~~-~~~~~~~~ 169 (181)
++..|.++..-..++.... ..+.-.+.|=-|+|-+-|.|-++| ++.-++.|
T Consensus 149 t~~l~lLl~~g~~w~~gaf--~~i~wt~~~~~fiwLlafpEaflnG~~~ailvv 200 (223)
T COG3235 149 TILLTLLLLTGILWAAGAF--SEILWTTALPVFIWLLAFPEAFLNGISTAILVV 200 (223)
T ss_pred HHHHHHHHHhHHHHHccCC--CcchHHhhhHHHHHHHHhHHHHhccchhhhhee
Confidence 7888999988888888875 566677889999999999999999 55555544
No 75
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.25 E-value=3.5e+02 Score=23.68 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 048334 86 VFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILW 129 (181)
Q Consensus 86 ~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~ 129 (181)
.-|+....+...-++.+++|+.....|-.+++.+.-.++++.++
T Consensus 27 l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~v 70 (224)
T PF13829_consen 27 LPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIV 70 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566677777777766666666665555555444
No 76
>COG4420 Predicted membrane protein [Function unknown]
Probab=21.34 E-value=1.8e+02 Score=25.07 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=31.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcCCCCC-cccccchhh
Q 048334 2 GVMSRSPPLLLALIIWFLLGTAYSIQLPF-LRWKGHPFL 39 (181)
Q Consensus 2 g~~~~s~~l~~~~~~~l~lg~~YSv~~PP-lRlKr~p~l 39 (181)
+-+.|||..+.+..+-++++.+-.+..-| .+|-.+|+.
T Consensus 52 a~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi 90 (191)
T COG4420 52 ARFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFI 90 (191)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHH
Confidence 45679999999988888888888877777 899999974
Done!