Query 048334
Match_columns 181
No_of_seqs 192 out of 363
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 24.9 82 0.0028 26.6 4.6 46 51-96 205-262 (297)
2 4gnt_B Carbohydrate-responsive 23.4 43 0.0015 19.1 1.7 13 147-159 7-19 (26)
3 3llw_A Geranyltranstransferase 23.2 29 0.00099 29.7 1.4 35 62-96 231-274 (311)
4 2hdi_B Colicin-IA; outer membr 22.6 27 0.00092 25.9 0.9 10 62-71 83-92 (113)
5 3o7q_A L-fucose-proton symport 21.5 3.1E+02 0.011 21.9 8.7 29 78-106 85-113 (438)
6 2h8o_A Geranyltranstransferase 21.0 37 0.0013 29.4 1.6 33 62-94 263-306 (335)
7 4f62_A Geranyltranstransferase 20.9 40 0.0014 29.0 1.9 35 62-96 223-268 (317)
8 3lsn_A Geranyltranstransferase 20.8 76 0.0026 27.0 3.5 36 62-97 224-270 (304)
9 2j1p_A Geranylgeranyl pyrophos 20.6 41 0.0014 28.3 1.8 29 62-93 234-262 (293)
10 3p8r_A Geranyltranstransferase 20.6 38 0.0013 28.8 1.6 42 53-94 220-273 (302)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=24.90 E-value=82 Score=26.64 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHhc-cCCChhhh-----------HHcCCccchhhhcHHHHHHHHHHHHHH
Q 048334 51 VYQLLFYIHIQ-DVPDVDGD-----------REFGIQTLSVIIGKEKVFWLGVYMMLT 96 (181)
Q Consensus 51 i~~lg~f~h~~-DipDieGD-----------r~~Gi~Tlpv~lG~~~~~~l~~~ll~~ 96 (181)
..++|.+.-++ |+-|+.|| -+.|..|+|+.+|.+++...+--...-
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~ 262 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAE 262 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33455433333 89998875 457889999999999887766555443
No 2
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=23.37 E-value=43 Score=19.12 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q 048334 147 YMFIWKASDCYTT 159 (181)
Q Consensus 147 Y~fIWkLFy~e~~ 159 (181)
-+.||+..|.+|.
T Consensus 7 nnaiwrawyiqyv 19 (26)
T 4gnt_B 7 NNAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHH
Confidence 4789999999885
No 3
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=23.18 E-value=29 Score=29.74 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.5
Q ss_pred cCCChhhhH---------HcCCccchhhhcHHHHHHHHHHHHHH
Q 048334 62 DVPDVDGDR---------EFGIQTLSVIIGKEKVFWLGVYMMLT 96 (181)
Q Consensus 62 DipDieGDr---------~~Gi~Tlpv~lG~~~~~~l~~~ll~~ 96 (181)
|+-|+.||. +.|..|+|+.+|.+++.-..--++.-
T Consensus 231 DiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~ 274 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTE 274 (311)
T ss_dssp HHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 888887775 67899999999999987665544443
No 4
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=22.57 E-value=27 Score=25.88 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=8.4
Q ss_pred cCCChhhhHH
Q 048334 62 DVPDVDGDRE 71 (181)
Q Consensus 62 DipDieGDr~ 71 (181)
--||+|||++
T Consensus 83 vtedvegdkk 92 (113)
T 2hdi_B 83 VTEDVEGDKK 92 (113)
T ss_dssp CSSCHHHHHH
T ss_pred eecccccchh
Confidence 4589999986
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=21.53 E-value=3.1e+02 Score=21.88 Aligned_cols=29 Identities=3% Similarity=-0.035 Sum_probs=21.5
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048334 78 SVIIGKEKVFWLGVYMMLTAYGAAILVGA 106 (181)
Q Consensus 78 pv~lG~~~~~~l~~~ll~~~y~~~i~~g~ 106 (181)
.=++|+|++..++..+..+..+.....+.
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 113 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAE 113 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccc
Confidence 34689999999998888887776644433
No 6
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=21.04 E-value=37 Score=29.37 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=19.9
Q ss_pred cCCChhhh-----------HHcCCccchhhhcHHHHHHHHHHHH
Q 048334 62 DVPDVDGD-----------REFGIQTLSVIIGKEKVFWLGVYMM 94 (181)
Q Consensus 62 DipDieGD-----------r~~Gi~Tlpv~lG~~~~~~l~~~ll 94 (181)
|+-|+.|| -+.|..|+|+.+|.+++...+--..
T Consensus 263 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~ 306 (335)
T 2h8o_A 263 DLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQV 306 (335)
T ss_dssp HHHHHC-----------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 77776664 5578999999999877665554433
No 7
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=20.95 E-value=40 Score=29.00 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=23.4
Q ss_pred cCCChhh-----------hHHcCCccchhhhcHHHHHHHHHHHHHH
Q 048334 62 DVPDVDG-----------DREFGIQTLSVIIGKEKVFWLGVYMMLT 96 (181)
Q Consensus 62 DipDieG-----------Dr~~Gi~Tlpv~lG~~~~~~l~~~ll~~ 96 (181)
|+-|+.| |-+.|..|+|+.+|.+++...+--...-
T Consensus 223 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~ 268 (317)
T 4f62_A 223 DIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQ 268 (317)
T ss_dssp HHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6766665 4567999999999999888776655443
No 8
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=20.79 E-value=76 Score=26.96 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.2
Q ss_pred cCCChhhh-----------HHcCCccchhhhcHHHHHHHHHHHHHHH
Q 048334 62 DVPDVDGD-----------REFGIQTLSVIIGKEKVFWLGVYMMLTA 97 (181)
Q Consensus 62 DipDieGD-----------r~~Gi~Tlpv~lG~~~~~~l~~~ll~~~ 97 (181)
|+-|+.|| -+.|..|+|+.+|.+++...+--...-+
T Consensus 224 DilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 224 DILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 4678899999999998877766554443
No 9
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=20.63 E-value=41 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.9
Q ss_pred cCCChhhhHHcCCccchhhhcHHHHHHHHHHH
Q 048334 62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYM 93 (181)
Q Consensus 62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~l 93 (181)
|+-|+.||. ..|+|+.+|.+++...+--.
T Consensus 234 DiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 234 DILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 999999998 67999999988776665443
No 10
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=20.60 E-value=38 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHHHhc-cCCChhh-----------hHHcCCccchhhhcHHHHHHHHHHHH
Q 048334 53 QLLFYIHIQ-DVPDVDG-----------DREFGIQTLSVIIGKEKVFWLGVYMM 94 (181)
Q Consensus 53 ~lg~f~h~~-DipDieG-----------Dr~~Gi~Tlpv~lG~~~~~~l~~~ll 94 (181)
++|.+.-++ |+-|+.| |-+.|..|+|+.+|.+++...+--..
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 273 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLL 273 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 345333332 6666655 45689999999999888766655443
Done!