Query 048334
Match_columns 181
No_of_seqs 192 out of 363
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 14:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048334.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048334hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 24.5 13 0.00097 28.9 1.6 35 53-87 208-254 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 23.4 22 0.0016 27.6 2.7 41 62-102 85-126 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 16.2 37 0.0027 26.1 2.6 40 61-100 81-121 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 15.6 28 0.0021 27.0 1.7 21 68-88 241-261 (299)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 11.2 2.7E+02 0.019 20.0 9.1 24 80-103 85-108 (447)
6 d1wvia_ c.108.1.14 (A:) Putati 9.3 45 0.0033 24.1 0.9 22 62-83 206-228 (253)
7 d1ofcx1 a.4.1.3 (X:799-850) SA 6.2 1.4E+02 0.01 17.9 2.1 21 133-153 27-47 (52)
8 d1sr9a1 a.5.7.1 (A:437-491) 2- 6.0 1E+02 0.0074 18.6 1.3 12 148-159 42-53 (55)
9 d2c4na1 c.108.1.14 (A:1-250) N 5.9 62 0.0045 23.2 0.2 22 62-83 201-224 (250)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 4.8 2.5E+02 0.018 15.7 2.4 19 7-25 14-32 (37)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.53 E-value=13 Score=28.86 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=19.1
Q ss_pred HHHHHHHhc-cCCChhh-----------hHHcCCccchhhhcHHHHH
Q 048334 53 QLLFYIHIQ-DVPDVDG-----------DREFGIQTLSVIIGKEKVF 87 (181)
Q Consensus 53 ~lg~f~h~~-DipDieG-----------Dr~~Gi~Tlpv~lG~~~~~ 87 (181)
++|...-++ |+-|+.| |-+.|..|+|+.+|.+++.
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~ 254 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 254 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHH
Confidence 344333333 7777665 4567889999999987753
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=23.39 E-value=22 Score=27.63 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=33.3
Q ss_pred cCCChhhh-HHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 048334 62 DVPDVDGD-REFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAI 102 (181)
Q Consensus 62 DipDieGD-r~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i 102 (181)
|+||...| .+.|..|.-.++|...+...+-.++..++-...
T Consensus 85 DI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 85 DLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp TSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 99999874 789999999999999887777777666665543
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=16.23 E-value=37 Score=26.12 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=31.7
Q ss_pred ccCCChhhh-HHcCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 048334 61 QDVPDVDGD-REFGIQTLSVIIGKEKVFWLGVYMMLTAYGA 100 (181)
Q Consensus 61 ~DipDieGD-r~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~ 100 (181)
.||||+.+| .+-|-.|.-.++|...+...+-.++..++-.
T Consensus 81 DDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 81 DDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 399998776 4789999999999998877777666655543
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=15.56 E-value=28 Score=26.96 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.8
Q ss_pred hhHHcCCccchhhhcHHHHHH
Q 048334 68 GDREFGIQTLSVIIGKEKVFW 88 (181)
Q Consensus 68 GDr~~Gi~Tlpv~lG~~~~~~ 88 (181)
.|-+.|..|+|+.+|.+++-.
T Consensus 241 ~Dl~egK~Tlp~i~~le~a~~ 261 (299)
T d1rqja_ 241 ADQQLGKSTYPALLGLEQARK 261 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHH
T ss_pred hHHHCCChhHHHHHHHHHHHH
Confidence 366678999999999987644
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.25 E-value=2.7e+02 Score=20.04 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=17.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHH
Q 048334 80 IIGKEKVFWLGVYMMLTAYGAAIL 103 (181)
Q Consensus 80 ~lG~~~~~~l~~~ll~~~y~~~i~ 103 (181)
++|+|++..++..+..+..+....
T Consensus 85 r~g~r~~~~~~~~~~~~~~~~~~~ 108 (447)
T d1pw4a_ 85 RSNPRVFLPAGLILAAAVMLFMGF 108 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhhccc
Confidence 578999988887776666555443
No 6
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=9.26 E-value=45 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.0
Q ss_pred cCC-ChhhhHHcCCccchhhhcH
Q 048334 62 DVP-DVDGDREFGIQTLSVIIGK 83 (181)
Q Consensus 62 Dip-DieGDr~~Gi~Tlpv~lG~ 83 (181)
+.. |++|=++.|++|+-|.-|.
T Consensus 206 s~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 206 NYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp CTTTTHHHHHHTTCEEEEESSSS
T ss_pred ChHHHHHHHHHCCCCEEEECCCC
Confidence 367 9999999999999887774
No 7
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.23 E-value=1.4e+02 Score=17.88 Aligned_cols=21 Identities=10% Similarity=0.403 Sum_probs=16.7
Q ss_pred hhccCCCchhHHHHHHHHHHH
Q 048334 133 QTVDLSNKASTLSFYMFIWKA 153 (181)
Q Consensus 133 ~~vdl~sk~si~sfY~fIWkL 153 (181)
..++=++++++..|+.-.|+-
T Consensus 27 ~e~~~Kt~eEV~~Y~~vFw~r 47 (52)
T d1ofcx1 27 KDVEGKTPEEVIEYNAVFWER 47 (52)
T ss_dssp TSSTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHH
Confidence 445557889999999999974
No 8
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.96 E-value=1e+02 Score=18.57 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhh
Q 048334 148 MFIWKASDCYTT 159 (181)
Q Consensus 148 ~fIWkLFy~e~~ 159 (181)
.-||++|--||.
T Consensus 42 ~~I~~~F~~~Yl 53 (55)
T d1sr9a1 42 KEMWDAFAEEYL 53 (55)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 568999988874
No 9
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Probab=5.93 E-value=62 Score=23.23 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.9
Q ss_pred c-CC-ChhhhHHcCCccchhhhcH
Q 048334 62 D-VP-DVDGDREFGIQTLSVIIGK 83 (181)
Q Consensus 62 D-ip-DieGDr~~Gi~Tlpv~lG~ 83 (181)
| ++ ||+|=++.|++|.-|.-|.
T Consensus 201 D~~~~DI~~a~~aG~~tilV~~G~ 224 (250)
T d2c4na1 201 DNLRTDILAGFQAGLETILVLSGV 224 (250)
T ss_dssp SCTTTHHHHHHHTTCEEEEESSSS
T ss_pred CChHHHHHHHHHCCCCEEEECCCC
Confidence 5 56 8999999999999887774
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.79 E-value=2.5e+02 Score=15.70 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHHHHHhc
Q 048334 7 SPPLLLALIIWFLLGTAYS 25 (181)
Q Consensus 7 s~~l~~~~~~~l~lg~~YS 25 (181)
-.-+.|.+++-+++|..+|
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3456777777778887776
Done!