BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048339
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 157/304 (51%), Gaps = 13/304 (4%)
Query: 50 HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADK--AGGK 107
HP+ R +V G I +++ + + A +L H+ ++ + GG
Sbjct: 39 HPDTKRRFHELVC--ASGQIE-HLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGD 95
Query: 108 MVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFL 167
T++ G A L+ G + + V G YALV PPGHHA A G+C
Sbjct: 96 TGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIF 155
Query: 168 NNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQ 226
NN +A A G +V ++D DVH+GNGT + ++ VLTISLH H + P
Sbjct: 156 NNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLH-QHLCFPP---D 211
Query: 227 NGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSA 286
+G E G G G GYN+N+PLP G+G+ Y+HAM ++V+PA++ + P +I++ G D+S
Sbjct: 212 SGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASM 271
Query: 287 FDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLE---GV 343
DP R +T DG+R+M R A GR++ VQEGGY Y +C A +E GV
Sbjct: 272 LDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGV 331
Query: 344 LNLP 347
+LP
Sbjct: 332 RSLP 335
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 157/304 (51%), Gaps = 13/304 (4%)
Query: 50 HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINELVEADK--AGGK 107
HP+ R +V G I +++ + + A +L H+ ++ + GG
Sbjct: 45 HPDTKRRFHELVC--ASGQIE-HLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGD 101
Query: 108 MVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFL 167
T++ G A L+ G + + V G YALV PPGHHA A G+C
Sbjct: 102 TGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIF 161
Query: 168 NNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQ 226
NN +A A G +V ++D DVH+GNGT + ++ VLTISLH H + P
Sbjct: 162 NNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLH-QHLCFPP---D 217
Query: 227 NGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSA 286
+G E G G G GYN+N+PLP G+G+ Y+HAM ++V+PA++ + P +I++ G D+S
Sbjct: 218 SGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASM 277
Query: 287 FDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLE---GV 343
DP R +T DG+R+M R A GR++ VQEGGY Y +C A +E GV
Sbjct: 278 LDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGV 337
Query: 344 LNLP 347
+LP
Sbjct: 338 RSLP 341
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 120/231 (51%), Gaps = 9/231 (3%)
Query: 113 TVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGL 172
T ++PG+W AAL ++ + + + GH K A++L RPPGHHA M GYCF+NNA +
Sbjct: 118 TAISPGTWEAALSSMASAIDGADLIAAGH-KAAFSLCRPPGHHAGIDMFGGYCFINNAAV 176
Query: 173 AVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDE 232
A Q L+ G K+ ++D+D H+GNGT + FY V SLH + P G +E
Sbjct: 177 AAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHF--LGYAEE 234
Query: 233 LGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGR 292
G+G G G N P+ GT + A+T+ + I F IV+ +G D+ DP
Sbjct: 235 TGKGAGAGTTANYPMGRGTPYSVWGEALTD-SLKRIAAFGAEAIVVSLGVDTFEQDPISF 293
Query: 293 QCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGV 343
LT Y MGR + + SG LL+V EGGY V + L+GV
Sbjct: 294 FKLTSPDYITMGRTIAA-----SGVPLLVVMEGGYGVPEIGLNVANVLKGV 339
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 134/242 (55%), Gaps = 18/242 (7%)
Query: 80 PAQIPQLLSFHTPDYINELVEADKA-----GGKMVCD-GTVLNPGSWG---AALLAVGTT 130
PA +LL FHT DYIN L+EA+++ G + + G NP S+ + LA G+T
Sbjct: 51 PATKEELLLFHTEDYINTLMEAERSQSVPKGAREKYNIGGYENPVSYAMFTGSSLATGST 110
Query: 131 LSAMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVI 188
+ A++ L G+ +A+ P G HHA + A+G+C++NN + ++ G +++ I
Sbjct: 111 VQAIEEFLKGN--VAF---NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYI 165
Query: 189 DIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLP 248
D+D H+ +G E FY +++V +SLH + P + G ++E+GEG+G GYNLNIPLP
Sbjct: 166 DLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPF--EKGFLEEIGEGKGKGYNLNIPLP 223
Query: 249 NGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVR 308
G D ++ A+ + + + FEP + +L +G D D + L+ + + IVR
Sbjct: 224 KGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVR 283
Query: 309 SL 310
+
Sbjct: 284 EV 285
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 131/242 (54%), Gaps = 18/242 (7%)
Query: 80 PAQIPQLLSFHTPDYINELVEAD------KAGGKMVCDGTVLNPGSWG---AALLAVGTT 130
PA +LL FHT DYIN L+EA+ K + G NP S+ + LA G+T
Sbjct: 51 PATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGST 110
Query: 131 LSAMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVI 188
+ A++ L G+ +A+ P G HHA + A+G+C++NN + ++ G +++ I
Sbjct: 111 VQAIEEFLKGN--VAF---NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYI 165
Query: 189 DIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLP 248
D+D H+ +G E FY +++V +SLH + P + G ++E+GEG+G GYNLNIPLP
Sbjct: 166 DLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPF--EKGFLEEIGEGKGKGYNLNIPLP 223
Query: 249 NGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVR 308
G D ++ A+ + + + FEP + +L +G D D + L+ + + IVR
Sbjct: 224 KGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVR 283
Query: 309 SL 310
+
Sbjct: 284 EV 285
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 119/231 (51%), Gaps = 9/231 (3%)
Query: 113 TVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGL 172
T ++PG+W AAL ++ + + + GH K A++L RPPGH A M GYCF+NNA +
Sbjct: 118 TAISPGTWEAALSSMASAIDGADLIAAGH-KAAFSLCRPPGHAAGIDMFGGYCFINNAAV 176
Query: 173 AVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDE 232
A Q L+ G K+ ++D+D H+GNGT + FY V SLH + P G +E
Sbjct: 177 AAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHF--LGYAEE 234
Query: 233 LGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGR 292
G+G G G N P+ GT + A+T+ + I F IV+ +G D+ DP
Sbjct: 235 TGKGAGAGTTANYPMGRGTPYSVWGEALTD-SLKRIAAFGAEAIVVSLGVDTFEQDPISF 293
Query: 293 QCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGV 343
LT Y MGR + + SG LL+V EGGY V + L+GV
Sbjct: 294 FKLTSPDYITMGRTIAA-----SGVPLLVVMEGGYGVPEIGLNVANVLKGV 339
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 159/329 (48%), Gaps = 45/329 (13%)
Query: 49 KHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI-----NELVEADK 103
+HPE++ RI++I S L+ + G A + +L S H+ ++ N L
Sbjct: 60 RHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKL 119
Query: 104 AGGKMV------------CDG------TVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKI 144
GK+ C G T+ N S AA A G+ V K
Sbjct: 120 DNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKN 179
Query: 145 AYALVRPPGHHAQPTMADGYCFLNNAGLAV-QLALNSGCGKVVVIDIDVHYGNGTAEGFY 203
+A+VRPPGHHA + A G+CF N+ +A QL S K++++D DVH+GNGT + FY
Sbjct: 180 GFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFY 239
Query: 204 RSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG----TGDRGYVHA 259
+ VL ISLH + G P +G VDE+G G G G+N+N+ G GD Y+ A
Sbjct: 240 QDPSVLYISLHRHDD--GNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAA 297
Query: 260 MTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGY----REMGRIVRSLADRYS 315
+V+P ++F P+++++ G D++ P + GY + G + + L + +
Sbjct: 298 FRIVVMPIAREFSPDLVLVSAGFDAAEGHP-----APLGGYHVSAKCFGYMTQQLMN-LA 351
Query: 316 GGRLLIVQEGGYHVT----YSAYCLHATL 340
GG +++ EGG+ +T S C+ A L
Sbjct: 352 GGAVVLALEGGHDLTAICDASEACVAALL 380
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 162/340 (47%), Gaps = 43/340 (12%)
Query: 50 HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI---------NELVE 100
HPE++ RI++I S L+ + G A + +L + H+ + + ++
Sbjct: 31 HPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLD 90
Query: 101 ADKAGGKMV-------CDG------TVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKIAY 146
+ K G + C G T+ N S GAA LAVG + + V G K +
Sbjct: 91 SKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGF 150
Query: 147 ALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRS 205
A+VRPPGHHA+ + G+C+ N+ +A +L K++++D DVH+GNGT + FY
Sbjct: 151 AVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSD 210
Query: 206 NKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG----TGDRGYVHAMT 261
VL +SLH G P +G DE+G G G G+N+N+ G GD Y+ A
Sbjct: 211 PSVLYMSLHRYDD--GNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFR 268
Query: 262 ELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADR---YSGGR 318
+V+P +F P+++++ SS FD + GY R L + +GGR
Sbjct: 269 TVVMPIASEFAPDVVLV-----SSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGR 323
Query: 319 LLIVQEGGYHVT----YSAYCLHATLEGVLN-LPLALLSD 353
+++ EGGY +T S C+ A L L+ LP +L
Sbjct: 324 IVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVLQQ 363
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 162/338 (47%), Gaps = 43/338 (12%)
Query: 50 HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI---------NELVE 100
HPE++ RI++I S L+ + G A + +L + H+ + + ++
Sbjct: 31 HPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLD 90
Query: 101 ADKAGGKMV-------CDG------TVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKIAY 146
+ K G + C G T+ N S GAA LAVG + + V G K +
Sbjct: 91 SKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGF 150
Query: 147 ALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRS 205
A+VRPPGHHA+ + G+C+ N+ +A +L K++++D DVH+GNGT + FY
Sbjct: 151 AVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSD 210
Query: 206 NKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG----TGDRGYVHAMT 261
VL +SLH G P +G DE+G G G G+N+N+ G GD Y+ A
Sbjct: 211 PSVLYMSLHRYDD--GNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFR 268
Query: 262 ELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADR---YSGGR 318
+V+P +F P+++++ SS FD + GY R L + +GGR
Sbjct: 269 TVVMPIASEFAPDVVLV-----SSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGR 323
Query: 319 LLIVQEGGYHVT----YSAYCLHATLEGVLN-LPLALL 351
+++ EGGY +T S C+ A L L+ LP +L
Sbjct: 324 IVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVL 361
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 162/340 (47%), Gaps = 43/340 (12%)
Query: 50 HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI---------NELVE 100
HPE++ RI++I S L+ + G A + +L + H+ + + ++
Sbjct: 31 HPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLD 90
Query: 101 ADKAGGKMV-------CDG------TVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKIAY 146
+ K G + C G T+ N S GAA LAVG + + V G K +
Sbjct: 91 SKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGF 150
Query: 147 ALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRS 205
A+VRPPGHHA+ + G+C+ N+ +A +L K++++D DVH+GNGT + FY
Sbjct: 151 AVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSD 210
Query: 206 NKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG----TGDRGYVHAMT 261
VL +SLH G P +G DE+G G G G+N+N+ G GD Y+ A
Sbjct: 211 PSVLYMSLHRYDD--GNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFR 268
Query: 262 ELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADR---YSGGR 318
+V+P +F P+++++ SS FD + GY R L + +GGR
Sbjct: 269 TVVMPIASEFAPDVVLV-----SSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGR 323
Query: 319 LLIVQEGGYHVT----YSAYCLHATLEGVLN-LPLALLSD 353
+++ EGG+ +T S C+ A L L+ LP +L
Sbjct: 324 IVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQ 363
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 43/338 (12%)
Query: 50 HPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI---------NELVE 100
HPE++ RI++I S L+ + G A + +L + H+ + + ++
Sbjct: 31 HPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLD 90
Query: 101 ADKAGGKMV-------CDG------TVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKIAY 146
+ K G + C G T+ N S GAA LAVG + + V G K +
Sbjct: 91 SKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGF 150
Query: 147 ALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRS 205
A+VRPPGHHA+ + G+C+ N+ +A +L K++++D DVH+GNGT + FY
Sbjct: 151 AVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSD 210
Query: 206 NKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG----TGDRGYVHAMT 261
VL +SLH G P +G DE+G G G G+N+N+ G GD Y+ A
Sbjct: 211 PSVLYMSLHRYDD--GNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFR 268
Query: 262 ELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADR---YSGGR 318
+V+P +F P+++++ SS FD + GY R L + +GGR
Sbjct: 269 TVVMPIASEFAPDVVLV-----SSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGR 323
Query: 319 LLIVQEGGYHVT----YSAYCLHATLEGVLN-LPLALL 351
+++ EGG+ +T S C+ A L L+ LP +L
Sbjct: 324 IVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVL 361
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 15/228 (6%)
Query: 105 GGKMVCDGTV-LNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADG 163
+ + DG+ + +W AA + + L+A V DG AYAL RPPGHHA+ A G
Sbjct: 128 AARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDG-APAAYALCRPPGHHARVDAAGG 186
Query: 164 YCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPS 223
+C+LNNA +A Q +V V+D D+H+G G E FY VL +S+H + ++ P+
Sbjct: 187 FCYLNNAAIAAQALRARHA-RVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPA 245
Query: 224 HPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQD 283
G DE G GEG GYN+N+P+P+G+ + + + + + +++F P+ +VL +G D
Sbjct: 246 --VAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDD-ALRELRRFAPDALVLSLGFD 302
Query: 284 SSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRL--LIVQEGGYHV 329
DP + +T DG+ +G ++ +L RL +IVQEGGYH+
Sbjct: 303 VYRDDPQSQVAVTTDGFGRLGHLIGAL-------RLPTVIVQEGGYHI 343
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGT-----VLNPGSWGAALLAV---GTTLS 132
A + ++ +FHT Y+ L + + G D L P + G A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGT-----VLNPGSWGAALLAV---GTTLS 132
A + ++ +FHT Y+ L + + G D L P + G A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 30/269 (11%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGK-----------MVCDGTVLNPGSWGAALLAVGT 129
A + ++ +FHT Y+ L + + G C T G + A G
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYACPAT---EGIFDYAAAIGGA 118
Query: 130 TLSAMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVV 187
T++A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++
Sbjct: 119 TITAAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILY 174
Query: 188 IDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIP 246
+D+D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P
Sbjct: 175 VDLDLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVP 230
Query: 247 LPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRI 306
+ +G D Y ++ Q F P +VL +G D+ A DP +T G +G+
Sbjct: 231 IQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKC 287
Query: 307 VRSLADRYSGGRLLIVQEGGYHVTYSAYC 335
++ + LI+ GGY++ +A C
Sbjct: 288 LKYILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 30/269 (11%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGK-----------MVCDGTVLNPGSWGAALLAVGT 129
A + ++ +FHT Y+ L + + G C T G + A G
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYECPAT---EGIFDYAAAIGGA 118
Query: 130 TLSAMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVV 187
T++A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++
Sbjct: 119 TITAAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILY 174
Query: 188 IDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIP 246
+D+D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P
Sbjct: 175 VDLDLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVP 230
Query: 247 LPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRI 306
+ +G D Y ++ Q F P +VL +G D+ A DP +T G +G+
Sbjct: 231 IQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKC 287
Query: 307 VRSLADRYSGGRLLIVQEGGYHVTYSAYC 335
++ + LI+ GGY++ +A C
Sbjct: 288 LKYILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYNCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 63 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 122
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 123 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 178
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 179 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 234
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 235 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 291
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 292 ILQWQLA--TLILGGGGYNLANTARC 315
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G HHA+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHHAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GG+++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGFNLANTARC 314
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 24/266 (9%)
Query: 81 AQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVL--------NPGSWGAALLAVGTTLS 132
A + ++ +FHT Y+ L + + G D G + A G T++
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATIT 121
Query: 133 AMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
A + ++DG K+A + G H A+ A G+C+LN+A L + L L +++ +D+
Sbjct: 122 AAQCLIDGMCKVA---INWSGGWHAAKKDEASGFCYLNDAVLGI-LRLRRKFERILYVDL 177
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH-PQNGTVDELGEGEGFGYNLNIPLPN 249
D+H+G+G + F ++KV+T+SLH + P P G V ++G G+G Y++N+P+ +
Sbjct: 178 DLHHGDGVEDAFSFTSKVMTVSLH----KFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQD 233
Query: 250 GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRS 309
G D Y ++ Q F P +VL +G D+ A DP +T G +G+ ++
Sbjct: 234 GIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG---IGKCLKY 290
Query: 310 LADRYSGGRLLIVQEGGYHVTYSAYC 335
+ LI+ GGY++ +A C
Sbjct: 291 ILQWQLA--TLILGGGGYNLANTARC 314
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 154 HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISL 213
HHA+ + A G+C++N+ LA+ L L +V+ IDID+H+G+G E FY +++V+T+S
Sbjct: 134 HHAKKSEASGFCYVNDIVLAI-LELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSF 192
Query: 214 HMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEP 273
H +G P G + ++G G+G Y +N P+ +G D Y ++ ++ ++P
Sbjct: 193 H----KYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQP 248
Query: 274 NMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSL 310
+ +VL G DS + D G LT+ G+ + +V++
Sbjct: 249 SAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTF 285
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 125/269 (46%), Gaps = 25/269 (9%)
Query: 80 PAQIPQ--LLSFHTPDYINELVEADKAGGK---------MVCDGTVLNPGSWGAALLAVG 128
P Q Q + FH+ DYI+ L + V D + PG + G
Sbjct: 50 PYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTG 109
Query: 129 TTLSAMKHVLDGHGKIAYALVRPPG--HHAQPTMADGYCFLNNAGLAVQLALNSGCGKVV 186
+L + + KI + G HHA+ A G+C++N+ + + L L +V+
Sbjct: 110 ASLQGATQL---NNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGI-LELLKYHPRVL 165
Query: 187 VIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIP 246
IDID+H+G+G E FY +++V+T+S H +G++ P G + E+G G Y LN+P
Sbjct: 166 YIDIDIHHGDGVQEAFYLTDRVMTVSFH-KYGNY--FFPGTGDMYEVGAESGRYYCLNVP 222
Query: 247 LPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRI 306
L +G D+ Y H ++ + ++P IVL G DS D G L++ G+ E
Sbjct: 223 LRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEY 282
Query: 307 VRSLADRYSGGRLLIVQEGGYHVTYSAYC 335
V+S LL++ GGY V A C
Sbjct: 283 VKSF-----NIPLLVLGGGGYTVRNVARC 306
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 45/183 (24%)
Query: 169 NAGLAVQLALNSGCGKVVVIDI-----DVHYGNGTAEG---------FYRSNKVL----- 209
NAG V L +SGCGK +I + DV G T +G F R N +
Sbjct: 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501
Query: 210 -----TISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG----TGDRGYVHAM 260
TI +++ G G + + ++ E F LPNG GDRG +
Sbjct: 502 ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT----LPNGYNTLVGDRGTQLSG 557
Query: 261 TELVVPAIQK-FEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRL 319
+ AI + N +L++ + +SA D E IV+ D+ + GR
Sbjct: 558 GQKQRIAIARALVRNPKILLLDEATSALDA------------ESEGIVQQALDKAAKGRT 605
Query: 320 LIV 322
I+
Sbjct: 606 TII 608
>pdb|2RA5|A Chain A, Crystal Structure Of The Putative Transcriptional
Regulator From Streptomyces Coelicolor
Length = 247
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 190 IDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEG 238
+D+ G A G YR + I+LH S G +G + LGE G
Sbjct: 159 VDLDTGQLEATGLYRLXRAAGITLHSARQSIGARAATSGEAERLGEDAG 207
>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp
Length = 498
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 28 HDTGKGLF-DTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPIS 70
H T KG + G+ G++EV+ HPE ++ ++S+ P+S
Sbjct: 312 HSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVS 355
>pdb|2CZ2|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-1
Crystal)
pdb|2CZ3|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
Crystal)
pdb|2CZ3|B Chain B, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
Crystal)
Length = 223
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 247 LPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRI 306
LP R V +++L+ IQ + ++ VGQ++ Q + G+ + +I
Sbjct: 96 LPQDPQKRAIVRXISDLIASGIQPLQNLSVLKQVGQENQX---QWAQKVITSGFNALEKI 152
Query: 307 VRSLADRYSGG 317
++S A +Y G
Sbjct: 153 LQSTAGKYCVG 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,311,805
Number of Sequences: 62578
Number of extensions: 623371
Number of successful extensions: 1780
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1687
Number of HSP's gapped (non-prelim): 33
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)