Query 048339
Match_columns 386
No_of_seqs 201 out of 1504
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zz1_A Histone deacetylase-lik 100.0 2.4E-94 8.4E-99 718.6 36.2 355 16-378 2-367 (369)
2 2pqp_A HD7A, histone deacetyla 100.0 2.5E-92 8.7E-97 707.9 27.0 350 15-382 36-419 (421)
3 2vqm_A HD4, histone deacetylas 100.0 4E-91 1.4E-95 705.1 23.7 350 15-382 8-390 (413)
4 3q9b_A Acetylpolyamine amidohy 100.0 2.8E-88 9.5E-93 665.8 28.0 308 17-345 1-341 (341)
5 4a69_A Histone deacetylase 3,; 100.0 6.1E-87 2.1E-91 664.9 32.6 308 15-348 3-319 (376)
6 3men_A Acetylpolyamine aminohy 100.0 2.3E-87 7.8E-92 662.8 28.9 308 16-346 21-360 (362)
7 3max_A HD2, histone deacetylas 100.0 1.7E-86 6E-91 658.7 31.8 308 14-349 2-319 (367)
8 1c3p_A Protein (HDLP (histone 100.0 1.2E-86 4E-91 664.6 27.9 307 14-349 1-319 (375)
9 3ew8_A HD8, histone deacetylas 100.0 3E-86 1E-90 660.0 30.7 315 5-348 4-327 (388)
10 4h08_A Putative hydrolase; GDS 78.8 12 0.00042 31.8 9.8 57 242-310 48-105 (200)
11 1ivn_A Thioesterase I; hydrola 67.6 22 0.00075 29.8 8.4 68 242-322 37-105 (190)
12 3hp4_A GDSL-esterase; psychrot 66.7 15 0.00052 30.5 7.1 67 243-322 42-109 (185)
13 3bzw_A Putative lipase; protei 65.8 12 0.0004 34.1 6.7 48 242-292 61-109 (274)
14 4hf7_A Putative acylhydrolase; 64.1 6.3 0.00021 34.3 4.3 40 243-287 54-94 (209)
15 3p94_A GDSL-like lipase; serin 60.2 16 0.00054 30.8 6.1 71 242-322 49-120 (204)
16 1es9_A PAF-AH, platelet-activa 58.6 24 0.00081 30.8 7.2 46 268-322 89-136 (232)
17 1vjg_A Putative lipase from th 57.7 9 0.00031 33.1 4.1 74 243-323 60-136 (218)
18 2buf_A Acetylglutamate kinase; 55.2 54 0.0018 30.6 9.4 61 255-327 9-69 (300)
19 3d2m_A Putative acetylglutamat 52.9 19 0.00065 35.6 6.1 60 254-326 25-84 (456)
20 3dci_A Arylesterase; SGNH_hydr 51.6 51 0.0018 28.7 8.2 53 266-323 94-154 (232)
21 3mil_A Isoamyl acetate-hydroly 51.3 57 0.002 27.9 8.4 73 242-323 46-120 (240)
22 3rjt_A Lipolytic protein G-D-S 51.1 13 0.00044 31.5 4.0 56 266-322 77-136 (216)
23 2q0q_A ARYL esterase; SGNH hyd 49.4 48 0.0016 28.0 7.5 40 266-310 76-118 (216)
24 1yzf_A Lipase/acylhydrolase; s 48.7 56 0.0019 26.8 7.6 68 243-323 43-111 (195)
25 2bty_A Acetylglutamate kinase; 45.8 48 0.0017 30.5 7.3 62 255-328 4-65 (282)
26 3dff_A Teicoplanin pseudoaglyc 45.2 23 0.00079 32.8 5.0 33 255-287 131-163 (273)
27 2vpt_A Lipolytic enzyme; ester 44.0 38 0.0013 29.1 6.0 49 252-309 67-116 (215)
28 3dfi_A Pseudoaglycone deacetyl 43.4 27 0.00093 32.2 5.1 33 255-287 128-160 (270)
29 3skv_A SSFX3; jelly roll, GDSL 42.9 30 0.001 33.8 5.6 51 266-323 238-290 (385)
30 3dc7_A Putative uncharacterize 42.7 26 0.0009 30.4 4.8 53 271-323 81-136 (232)
31 2ap9_A NAG kinase, acetylgluta 42.6 48 0.0016 30.9 6.8 65 252-328 5-69 (299)
32 2rd5_A Acetylglutamate kinase- 42.5 36 0.0012 31.8 5.9 62 254-327 18-79 (298)
33 1ii7_A MRE11 nuclease; RAD50, 40.7 1.1E+02 0.0038 28.4 9.2 64 254-328 23-86 (333)
34 2xdq_A Light-independent proto 38.7 85 0.0029 31.0 8.3 70 260-344 85-155 (460)
35 1fxw_F Alpha2, platelet-activa 38.4 73 0.0025 27.6 7.0 67 243-322 69-137 (229)
36 2q8u_A Exonuclease, putative; 35.3 1.3E+02 0.0045 27.8 8.7 65 254-329 44-108 (336)
37 2v5h_A Acetylglutamate kinase; 34.7 59 0.002 30.8 6.1 61 255-327 32-92 (321)
38 2wao_A Endoglucanase E; plant 33.0 53 0.0018 30.9 5.4 49 269-323 210-260 (341)
39 3av0_A DNA double-strand break 32.7 1.3E+02 0.0045 28.7 8.3 62 254-326 43-104 (386)
40 1mio_B Nitrogenase molybdenum 32.2 1.3E+02 0.0046 29.6 8.5 59 259-330 83-145 (458)
41 2o14_A Hypothetical protein YX 30.7 88 0.003 30.0 6.7 72 242-322 202-275 (375)
42 3tho_B Exonuclease, putative; 29.4 1.7E+02 0.0058 27.9 8.5 64 253-328 25-89 (379)
43 1g3q_A MIND ATPase, cell divis 29.2 40 0.0014 29.3 3.6 15 183-197 32-46 (237)
44 2waa_A Acetyl esterase, xylan 28.3 42 0.0014 31.8 3.9 47 270-322 223-271 (347)
45 3pdi_B Nitrogenase MOFE cofact 28.3 1.6E+02 0.0056 29.1 8.4 70 260-343 80-153 (458)
46 3ea0_A ATPase, para family; al 28.2 43 0.0015 29.2 3.7 18 182-199 34-51 (245)
47 1hyq_A MIND, cell division inh 27.6 44 0.0015 29.7 3.7 15 183-197 32-46 (263)
48 3q9l_A Septum site-determining 26.1 48 0.0017 29.2 3.6 16 183-198 32-47 (260)
49 3jug_A Beta-mannanase; TIM-bar 25.4 3.4E+02 0.011 25.7 9.7 68 256-330 118-187 (345)
50 3kjh_A CO dehydrogenase/acetyl 25.3 54 0.0018 28.4 3.7 15 180-196 27-41 (254)
51 3t1i_A Double-strand break rep 24.9 1.7E+02 0.0058 29.0 7.7 49 255-311 55-103 (431)
52 3u7q_A Nitrogenase molybdenum- 24.6 2.6E+02 0.0088 28.0 9.1 57 259-329 130-188 (492)
53 1mio_A Nitrogenase molybdenum 24.6 1.4E+02 0.0049 30.3 7.2 73 259-345 121-198 (533)
54 2xdq_B Light-independent proto 23.1 1.9E+02 0.0065 29.0 7.8 58 260-331 76-134 (511)
55 3aek_B Light-independent proto 22.6 2.4E+02 0.0083 28.4 8.5 57 259-331 72-129 (525)
56 1k7c_A Rhamnogalacturonan acet 22.4 2.1E+02 0.007 24.9 7.1 42 243-287 36-79 (233)
57 1cp2_A CP2, nitrogenase iron p 21.8 55 0.0019 29.2 3.1 19 183-202 30-48 (269)
58 3pdi_A Nitrogenase MOFE cofact 21.2 1.7E+02 0.0058 29.2 6.9 73 259-345 109-185 (483)
59 3la6_A Tyrosine-protein kinase 20.9 72 0.0025 29.5 3.8 14 183-196 122-135 (286)
60 2hsj_A Putative platelet activ 20.8 1E+02 0.0035 25.9 4.5 48 268-322 81-130 (214)
61 4ep4_A Crossover junction endo 20.5 1.2E+02 0.004 26.1 4.8 32 249-280 40-71 (166)
62 3ez2_A Plasmid partition prote 20.5 60 0.0021 31.2 3.3 48 54-101 11-63 (398)
63 2xj4_A MIPZ; replication, cell 20.3 60 0.0021 29.6 3.1 16 183-198 34-49 (286)
64 2q6t_A DNAB replication FORK h 20.2 2.2E+02 0.0074 27.8 7.4 49 265-323 303-360 (444)
No 1
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=2.4e-94 Score=718.61 Aligned_cols=355 Identities=31% Similarity=0.522 Sum_probs=322.2
Q ss_pred cEEEEEcccccCccCCCC-CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHH
Q 048339 16 IINVFWDDGMLNHDTGKG-LFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDY 94 (386)
Q Consensus 16 ~~~ivyde~~l~H~~~~~-~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Y 94 (386)
++.++||++|++|+++.+ .+..... +..+....|||+|+|++++.+.|++.++...+++++|++|+.++|++||+++|
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g-~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Y 80 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLT-ARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAH 80 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTT-TTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHH
T ss_pred eEEEEEchHHcccCCCCccccccccc-ccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHH
Confidence 689999999999999864 2221111 12333344999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHhh-cCCccccC-CcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCCCCCCCCCCCCccccchHHH
Q 048339 95 INELVEADK-AGGKMVCD-GTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGL 172 (386)
Q Consensus 95 l~~l~~~~~-~~~~~~~~-~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppGHHA~~~~~~GFC~~NnvAi 172 (386)
|++|++.+. .+...++. ||++++++|++|++++|+++.|++.+++|+.+++||++|||||||++++++|||+|||+||
T Consensus 81 v~~l~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppGHHA~~~~a~GFC~fNnvAi 160 (369)
T 1zz1_A 81 LENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSV 160 (369)
T ss_dssp HHHHHHHHHSTTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCCTTCCTTCCBTTBSSCHHHH
T ss_pred HHHHHHhCccccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCccCcCCCCCCCchHhhHHHH
Confidence 999999887 55566788 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCC-CCCCCcccCCCCCCceeeecCCCCC
Q 048339 173 AVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHP-QNGTVDELGEGEGFGYNLNIPLPNG 250 (386)
Q Consensus 173 Aa~~~~~~-g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P-~tg~~~e~G~g~g~g~~~NvpL~~g 250 (386)
||++|+++ |++||+|||||||||||||+|||+||+|||+|+|++ ++|| +||..+|+|.|+|+|+++|||||+|
T Consensus 161 Aa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~-----~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g 235 (369)
T 1zz1_A 161 AAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH-----LCFPPDSGYSTERGAGNGHGYNINVPLPPG 235 (369)
T ss_dssp HHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEET-----TSSSTTCCCTTCCCCGGGTTCEEEEEECTT
T ss_pred HHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCC-----CCCCCCCCcccccCCCCCCceEEeeecCCC
Confidence 99999976 899999999999999999999999999999999997 5799 9999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCC
Q 048339 251 TGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVT 330 (386)
Q Consensus 251 ~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~ 330 (386)
++|++|+.+|+++|+|++++|+||+||||||||+|.+||+|+++||+++|.++++.|+++|.++|++|++++|||||+++
T Consensus 236 ~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~ 315 (369)
T 1zz1_A 236 SGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPH 315 (369)
T ss_dssp CBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCcCCCCCCCCC------CCCCcchHHHHHHHHHHHhhh
Q 048339 331 YSAYCLHATLEGVLNLPLALLSDPIAY------YPEDEAFPVKVIESIKQYQND 378 (386)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 378 (386)
++++||.+++++|++.+. +.+|... .++....++++++++++.|..
T Consensus 316 ~l~~~~~~~~~~l~g~~~--~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 367 (369)
T 1zz1_A 316 YLPFCGLAVIEELTGVRS--LPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLAD 367 (369)
T ss_dssp THHHHHHHHHHHHHCCCC--CCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGGG
T ss_pred HHHHHHHHHHHHHhCCCC--CCCchhHHHhhccccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999765 5555432 234455678888888888843
No 2
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=2.5e-92 Score=707.92 Aligned_cols=350 Identities=29% Similarity=0.433 Sum_probs=306.5
Q ss_pred CcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHH
Q 048339 15 GIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDY 94 (386)
Q Consensus 15 ~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Y 94 (386)
++++++||++|++|++..+ ..+.|||+|+|+++|+++|++.++...+++++|++||.|||++||+++|
T Consensus 36 ~~t~~vyd~~~l~H~~~~~------------~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~Y 103 (421)
T 2pqp_A 36 FTTGLIYDSVMLKHQCSCG------------DNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERH 103 (421)
T ss_dssp TCEEEECCGGGGGCCCTTC------------CTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHH
T ss_pred CeEEEEECHHHHhhccCCC------------CCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHH
Confidence 4799999999999996532 1135999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHh---------------h--------cCCccccCCcccC-cChHHHHHHHHHHHHHHHHHHHhcccceEEeecC
Q 048339 95 INELVEAD---------------K--------AGGKMVCDGTVLN-PGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVR 150 (386)
Q Consensus 95 l~~l~~~~---------------~--------~~~~~~~~~t~~~-~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~r 150 (386)
|+.+.... . .+...++.||+++ +++|++|++++|+++.|++.|++|+.+++||++|
T Consensus 104 I~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~r 183 (421)
T 2pqp_A 104 VLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 183 (421)
T ss_dssp HHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCS
T ss_pred HHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCC
Confidence 97532100 0 0112356788888 4999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccchHHHHHHHHHhc-CCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCC
Q 048339 151 PPGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGT 229 (386)
Q Consensus 151 ppGHHA~~~~~~GFC~~NnvAiAa~~~~~~-g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~ 229 (386)
||||||.+++++|||+|||+||||++++++ |++||+|||||||||||||+|||+||+|||+|+|+++.+ ++||+||.
T Consensus 184 PpGHHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g--~~yPgtG~ 261 (421)
T 2pqp_A 184 PPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDG--NFFPGSGA 261 (421)
T ss_dssp SCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGG--TSTTCCCC
T ss_pred CCCCCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCC--CCCCCCCC
Confidence 999999999999999999999999999875 799999999999999999999999999999999996421 46999999
Q ss_pred CcccCCCCCCceeeecCCCC----CCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCC--CCCCCcCCHHHHHHH
Q 048339 230 VDELGEGEGFGYNLNIPLPN----GTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFD--PNGRQCLTMDGYREM 303 (386)
Q Consensus 230 ~~e~G~g~g~g~~~NvpL~~----g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~D--plg~~~lt~~gy~~~ 303 (386)
.+|+|.|+|+|||+|||||. +++|++|+.+|+++|+|++++|+||+||||||||+|.+| |+|+|+||+++|.++
T Consensus 262 ~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~ 341 (421)
T 2pqp_A 262 VDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYM 341 (421)
T ss_dssp TTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHH
T ss_pred hhhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHH
Confidence 99999999999999999974 579999999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCCCCcHHHHHHHHHHHHhCCCcCCCCCC-CCCCCCC--cchHHHHHHHHHHHhhhhh
Q 048339 304 GRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDP-IAYYPED--EAFPVKVIESIKQYQNDVI 380 (386)
Q Consensus 304 ~~~l~~~a~~~~~g~vv~vleGGY~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~ 380 (386)
++.|+++| +||+|++|||||+++++++++.++++.|+|.+.+.+... ....|.. ...++++++.+++||++|+
T Consensus 342 ~~~l~~~a----~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~~~~~p~~~a~~~i~~v~~~~~~yW~~l~ 417 (421)
T 2pqp_A 342 TQQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQ 417 (421)
T ss_dssp HHHHTTSG----GGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGGGGSCCCHHHHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHc----CCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhHHHH
Confidence 99998776 689999999999999999999999999999765433222 1122322 2346789999999999999
Q ss_pred cc
Q 048339 381 PF 382 (386)
Q Consensus 381 ~~ 382 (386)
++
T Consensus 418 ~~ 419 (421)
T 2pqp_A 418 RL 419 (421)
T ss_dssp C-
T ss_pred hh
Confidence 85
No 3
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=4e-91 Score=705.05 Aligned_cols=350 Identities=30% Similarity=0.461 Sum_probs=304.4
Q ss_pred CcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHH
Q 048339 15 GIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDY 94 (386)
Q Consensus 15 ~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Y 94 (386)
++|++|||++|++|+++.+. ...|||+|+|+++|+++|++.++...+++++|++||.++|++||+++|
T Consensus 8 ~~Tg~vyd~~~l~H~~~~g~------------~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Y 75 (413)
T 2vqm_A 8 FTTGLVYDTLMLKHQCTCGS------------SSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAH 75 (413)
T ss_dssp SSEEEECCGGGCSCCCTTC-------------------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHH
T ss_pred CeEEEEEcHHHhccCCCCCC------------CCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHH
Confidence 57999999999999987541 235999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHhhc----------------------CCccccCCcccCc-ChHHHHHHHHHHHHHHHHHHHhcccceEEeecCC
Q 048339 95 INELVEADKA----------------------GGKMVCDGTVLNP-GSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRP 151 (386)
Q Consensus 95 l~~l~~~~~~----------------------~~~~~~~~t~~~~-~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rp 151 (386)
|+.++..... +...++.||++++ +++++|++++|++++|++.|++|+.+++||++||
T Consensus 76 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrp 155 (413)
T 2vqm_A 76 TLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRP 155 (413)
T ss_dssp HHHHHSCGGGGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCS
T ss_pred HHHHhcCchhhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccc
Confidence 9877532211 1223566777765 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccchHHHHHHHHHhc-CCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCC
Q 048339 152 PGHHAQPTMADGYCFLNNAGLAVQLALNS-GCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTV 230 (386)
Q Consensus 152 pGHHA~~~~~~GFC~~NnvAiAa~~~~~~-g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~ 230 (386)
|||||.+++++|||+|||+||||+++++. +++||+|||||||||||||+|||+|++|+|+|+|++++ ++|||+||..
T Consensus 156 pGHHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~--~~f~pgtG~~ 233 (413)
T 2vqm_A 156 PGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDD--GNFFPGSGAP 233 (413)
T ss_dssp CCTTCBTTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGG--GCSTTCCCCT
T ss_pred ccccCcCCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccC--CCCCCCCCCH
Confidence 99999999999999999999999999875 89999999999999999999999999999999999743 2679999999
Q ss_pred cccCCCCCCceeeecCCC----CCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCC--CCCCCCcCCHHHHHHHH
Q 048339 231 DELGEGEGFGYNLNIPLP----NGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAF--DPNGRQCLTMDGYREMG 304 (386)
Q Consensus 231 ~e~G~g~g~g~~~NvpL~----~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~--Dplg~~~lt~~gy~~~~ 304 (386)
+|+|.|+|+|+|+||||+ ++++|++|+.+|+++|+|++++|+||+||||||||+|.+ ||+|+++||+++|.+++
T Consensus 234 ~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~ 313 (413)
T 2vqm_A 234 DEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLT 313 (413)
T ss_dssp TCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHH
T ss_pred HHcCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHH
Confidence 999999999999999987 468999999999999999999999999999999999998 66999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCCCCcHHHHHHHHHHHHhCCCcCCCCCC-CCCCCCC--cchHHHHHHHHHHHhhhhhc
Q 048339 305 RIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLALLSDP-IAYYPED--EAFPVKVIESIKQYQNDVIP 381 (386)
Q Consensus 305 ~~l~~~a~~~~~g~vv~vleGGY~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 381 (386)
++|+++| ++|+|++|||||++.++++||.+++++|+|.+.+.+++. ....|.. ...++++++.++++|++|++
T Consensus 314 ~~l~~~a----~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 314 KQLMGLA----GGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp HHHHTSG----GGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred HHHHHhc----CCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999876 689999999999999999999999999999764333221 1122332 23457889999999999987
Q ss_pred c
Q 048339 382 F 382 (386)
Q Consensus 382 ~ 382 (386)
.
T Consensus 390 ~ 390 (413)
T 2vqm_A 390 T 390 (413)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.8e-88 Score=665.78 Aligned_cols=308 Identities=31% Similarity=0.486 Sum_probs=280.5
Q ss_pred EEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHHHH
Q 048339 17 INVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYIN 96 (386)
Q Consensus 17 ~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Yl~ 96 (386)
|.+|||++|++|+++..+. .+....|||+|+|+++|.++|++.++. ++++|++|+.++|++|||++||+
T Consensus 1 m~~v~~~~~~~H~~~~~~~--------~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~ 69 (341)
T 3q9b_A 1 MRVIFSEDHKLRNAKTELY--------GGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLN 69 (341)
T ss_dssp CEEECCGGGGGCCCSCEEE--------TTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHH
T ss_pred CEEEECcHHhccCCccccc--------CCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHH
Confidence 4689999999999985211 112235999999999999999998874 57899999999999999999999
Q ss_pred HHHHHhhc------C--------------------------CccccCCcccCcChHHHHHHHHHHHHHHHHHHHhcccce
Q 048339 97 ELVEADKA------G--------------------------GKMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKI 144 (386)
Q Consensus 97 ~l~~~~~~------~--------------------------~~~~~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~ 144 (386)
+|++.+.. + ...++.||++++++|++|++++|+++.|++.|++|+ ++
T Consensus 70 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~-~~ 148 (341)
T 3q9b_A 70 FLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGH-KA 148 (341)
T ss_dssp HHHHHHHHHHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTC-SE
T ss_pred HHHHhhhhhhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 99987531 0 013577999999999999999999999999999997 89
Q ss_pred EEeecCCCCCCCCCCCCCCccccchHHHHHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCC
Q 048339 145 AYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH 224 (386)
Q Consensus 145 af~l~rppGHHA~~~~~~GFC~~NnvAiAa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~ 224 (386)
+||++|||||||.+++++|||+|||+||||++++++|++||+|||||||||||||+|||+||+|||+|+|++++ .+|
T Consensus 149 afal~rppGHHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~---~~y 225 (341)
T 3q9b_A 149 AFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPA---EAF 225 (341)
T ss_dssp EEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGG---GST
T ss_pred eEecCCCCCCCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCc---cCC
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999643 358
Q ss_pred CC-CCCCcccCCCCCCceeeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHH
Q 048339 225 PQ-NGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREM 303 (386)
Q Consensus 225 P~-tg~~~e~G~g~g~g~~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~ 303 (386)
|+ ||..+|+|.|+|+|+++|||||+|++|++|+.+|+++ +|.+++|+||+||||||||+|.+||+|.++||+++|.++
T Consensus 226 P~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~-l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~ 304 (341)
T 3q9b_A 226 PHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDS-LKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITM 304 (341)
T ss_dssp TCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHH-HHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHH
T ss_pred CCCCCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHH-HHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHH
Confidence 98 9999999999999999999999999999999999986 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCCCCcHHHHHHHHHHHHhC
Q 048339 304 GRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLN 345 (386)
Q Consensus 304 ~~~l~~~a~~~~~g~vv~vleGGY~~~~~~~~~~~~~~~l~~ 345 (386)
++.++++ ++|++++|||||+++++++|+.++++++.+
T Consensus 305 ~~~l~~~-----~~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 305 GRTIAAS-----GVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp HHHHHTT-----SSCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHh-----CCCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 9999876 479999999999999999999999999853
No 5
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.1e-87 Score=664.94 Aligned_cols=308 Identities=27% Similarity=0.411 Sum_probs=285.7
Q ss_pred CcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHH
Q 048339 15 GIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDY 94 (386)
Q Consensus 15 ~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Y 94 (386)
+++.++||++|++|+++.+ |||+|+|++++.++|++.|+...+++++|++|+.++|++||+++|
T Consensus 3 ~~~~~~y~~~~~~~~~g~~----------------HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Y 66 (376)
T 4a69_A 3 KTVAYFYDPDVGNFHYGAG----------------HPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDY 66 (376)
T ss_dssp CCEEEECCTTTTCCCCCTT----------------CSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHH
T ss_pred CeEEEEEChHHhCcCCCCC----------------CCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHH
Confidence 4799999999999999874 999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHhhcCC---------ccccCCcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCCCCCCCCCCCCcc
Q 048339 95 INELVEADKAGG---------KMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYC 165 (386)
Q Consensus 95 l~~l~~~~~~~~---------~~~~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppGHHA~~~~~~GFC 165 (386)
|++|++.+.... ..++.||++++++|++|++++|++|.|++++++|+.++||++. ||||||.+++++|||
T Consensus 67 i~~l~~~~~~~~~~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~-gG~HHA~~~~a~GFC 145 (376)
T 4a69_A 67 IDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWA-GGLHHAKKFEASGFC 145 (376)
T ss_dssp HHHHHHCCTTTGGGGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETT-CCCTTCBTTBCBTTB
T ss_pred HHHHHHhCcccchhhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCC-CCCCcCCcCCCCcch
Confidence 999988654321 1367799999999999999999999999999999888887754 456999999999999
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCCcccCCCCCCceeeec
Q 048339 166 FLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNI 245 (386)
Q Consensus 166 ~~NnvAiAa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~~e~G~g~g~g~~~Nv 245 (386)
+|||+||||+++++. .+||+|||||||||||||+|||+||+|||+|+|++.. .+||+||..+|+|.|+|+|+++||
T Consensus 146 ~~NdvAiAa~~l~~~-~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~---~~fPgtG~~~e~G~g~g~g~~vNv 221 (376)
T 4a69_A 146 YVNDIVIGILELLKY-HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGN---YFFPGTGDMYEVGAESGRYYCLNV 221 (376)
T ss_dssp SSCHHHHHHHHHTTT-CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECST---TCTTCCCCTTCCCCGGGTTSEEEE
T ss_pred hhhHHHHHHHHHHHh-CCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCC---cCCCCCCCccccCCCCCCceeEee
Confidence 999999999999876 4999999999999999999999999999999999743 369999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Q 048339 246 PLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEG 325 (386)
Q Consensus 246 pL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleG 325 (386)
|||+|++|++|+.+|+++|+|++++|+||+||||||||+|.+||+|.|+||+++|.++++.++++ ++|+++++||
T Consensus 222 PL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~-----~~p~v~v~eG 296 (376)
T 4a69_A 222 PLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSF-----NIPLLVLGGG 296 (376)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTT-----CCCEEEECCC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHc-----CCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999888765 6899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCc
Q 048339 326 GYHVTYSAYCLHATLEGVLNLPL 348 (386)
Q Consensus 326 GY~~~~~~~~~~~~~~~l~~~~~ 348 (386)
||++.++++||......++|.+.
T Consensus 297 GY~~~~var~w~~~~a~l~g~~~ 319 (376)
T 4a69_A 297 GYTVRNVARCWTYETSLLVEEAI 319 (376)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCC
T ss_pred CCChhHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999988653
No 6
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.3e-87 Score=662.76 Aligned_cols=308 Identities=29% Similarity=0.495 Sum_probs=280.2
Q ss_pred cEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHHHH
Q 048339 16 IINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYI 95 (386)
Q Consensus 16 ~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~Yl 95 (386)
+|.+|||++|++|+++..+. .+....|||+|+|+++|++.|++.++ ++++|++|+.++|++||+++||
T Consensus 21 ~M~~~~~~~~~~H~~~~~~~--------~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI 88 (362)
T 3men_A 21 SMLTYFHPDQSLHHPRTYFS--------RGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYL 88 (362)
T ss_dssp CCEEECCGGGGGCCCCCEEE--------TTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHH
T ss_pred ceEEEEChHHHhhCCccccc--------cCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHH
Confidence 46799999999999985211 11233599999999999999999886 6789999999999999999999
Q ss_pred HHHHHHhhc--------CC-----------------------ccccCCcccCcChHHHHHHHHHHHHHHHHHHHhcccce
Q 048339 96 NELVEADKA--------GG-----------------------KMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKI 144 (386)
Q Consensus 96 ~~l~~~~~~--------~~-----------------------~~~~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~ 144 (386)
++|++.+.. +. ..++.||++++++|++|++++|++|.|++.|++|+ ++
T Consensus 89 ~~l~~~~~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~-~~ 167 (362)
T 3men_A 89 RFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGA-PA 167 (362)
T ss_dssp HHHHHHHHHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTC-SE
T ss_pred HHHHHhhhhhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-Cc
Confidence 999887521 10 13577999999999999999999999999999998 89
Q ss_pred EEeecCCCCCCCCCCCCCCccccchHHHHHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCC
Q 048339 145 AYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSH 224 (386)
Q Consensus 145 af~l~rppGHHA~~~~~~GFC~~NnvAiAa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~ 224 (386)
+||++|||||||.+++++|||+|||+||||++|+++ .+||+|||||||||||||+|||+||+|||+|+|++++ .+|
T Consensus 168 afal~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~-~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~---~~y 243 (362)
T 3men_A 168 AYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRAR-HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPT---NFY 243 (362)
T ss_dssp EEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHTTT-CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCT---TST
T ss_pred eEEeCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc-CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCc---cCC
Confidence 999999999999999999999999999999999886 7999999999999999999999999999999999744 358
Q ss_pred CC-CCCCcccCCCCCCceeeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHH
Q 048339 225 PQ-NGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREM 303 (386)
Q Consensus 225 P~-tg~~~e~G~g~g~g~~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~ 303 (386)
|+ ||..+|+|.|+|+|+++|||||+|++|++|+.+|+++ +|.+++|+||+||||||||+|.+||+|.++||+++|.++
T Consensus 244 P~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~-l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~ 322 (362)
T 3men_A 244 PAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDA-LRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRL 322 (362)
T ss_dssp TCSSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHH-HHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHH
T ss_pred CCCCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHH-HHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHH
Confidence 98 9999999999999999999999999999999999986 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCCCCcHHHHHHHHHHHHhCC
Q 048339 304 GRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNL 346 (386)
Q Consensus 304 ~~~l~~~a~~~~~g~vv~vleGGY~~~~~~~~~~~~~~~l~~~ 346 (386)
++.++++ ++|++++|||||+++++++|+.++++++.+.
T Consensus 323 ~~~l~~~-----~~~~v~vleGGY~~~~l~~~~~a~l~~l~~~ 360 (362)
T 3men_A 323 GHLIGAL-----RLPTVIVQEGGYHIESLEANARSFFGGFGAL 360 (362)
T ss_dssp HHHHHTT-----CCCEEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhh-----CCCEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 9998876 4799999999999999999999999999763
No 7
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.7e-86 Score=658.72 Aligned_cols=308 Identities=25% Similarity=0.426 Sum_probs=285.5
Q ss_pred CCcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHH
Q 048339 14 EGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPD 93 (386)
Q Consensus 14 ~~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~ 93 (386)
++++.++||++|++|+++.+ |||+|+|++++.++|++.++...+++++|++|+.++|++|||++
T Consensus 2 ~~~v~~~y~~~~~~~~~g~~----------------HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~ 65 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYGQG----------------HPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDE 65 (367)
T ss_dssp CCCEEEECCGGGGGCCCCTT----------------CSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHH
T ss_pred CCeEEEEECccccCcCCCCC----------------CCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHH
Confidence 46899999999999999975 99999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHhhcCC---------ccccCCcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCC-CCCCCCCCCC
Q 048339 94 YINELVEADKAGG---------KMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPG-HHAQPTMADG 163 (386)
Q Consensus 94 Yl~~l~~~~~~~~---------~~~~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppG-HHA~~~~~~G 163 (386)
||++|++.+.... ..++.||++++++|+++++++|++|.|++.+++++. .+|+.|||| |||.+++++|
T Consensus 66 Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~--~~Ai~~pgG~HHA~~~~a~G 143 (367)
T 3max_A 66 YIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQT--DMAVNWAGGLHHAKKSEASG 143 (367)
T ss_dssp HHHHHHHCCGGGGGGCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSC--SEEEETTCCCTTCBTTBCBT
T ss_pred HHHHHHHhCccccchhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCc--ceEecCCCCCCcCCcCCCCC
Confidence 9999998654321 235779999999999999999999999999998754 567788998 9999999999
Q ss_pred ccccchHHHHHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCCcccCCCCCCceee
Q 048339 164 YCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNL 243 (386)
Q Consensus 164 FC~~NnvAiAa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~~e~G~g~g~g~~~ 243 (386)
||+|||+||||+++++. .+||+|||||||||||||+|||+||+|||+|+|++. .+||+||..+|+|.|+|+|+++
T Consensus 144 FC~~NdvaiAa~~l~~~-~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~----~~fPgtg~~~e~G~g~g~g~~v 218 (367)
T 3max_A 144 FCYVNDIVLAILELLKY-HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYG----EYFPGTGDLRDIGAGKGKYYAV 218 (367)
T ss_dssp TBCSCHHHHHHHHHTTT-CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECS----SCTTCCCCTTCCCCGGGTTCEE
T ss_pred chhhhHHHHHHHHHHHc-CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCC----CCCCCCCCccccCCCCCCceEE
Confidence 99999999999999875 599999999999999999999999999999999962 3689999999999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEe
Q 048339 244 NIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQ 323 (386)
Q Consensus 244 NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vl 323 (386)
|||||+|++|++|+.+|+++|+|++++|+||+||||||||+|.+||+|.++||.+||.++++.++++ ++|+++++
T Consensus 219 NvPL~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~-----~~p~v~~~ 293 (367)
T 3max_A 219 NFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTF-----NLPLLMLG 293 (367)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTT-----CCCEEEEC
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhc-----CCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999998888753 68999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCcC
Q 048339 324 EGGYHVTYSAYCLHATLEGVLNLPLA 349 (386)
Q Consensus 324 eGGY~~~~~~~~~~~~~~~l~~~~~~ 349 (386)
||||++.++++||......+++.+.|
T Consensus 294 eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 294 GGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp CCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCChhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999887644
No 8
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1.2e-86 Score=664.58 Aligned_cols=307 Identities=26% Similarity=0.397 Sum_probs=285.0
Q ss_pred CCcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHHHHhccCCHH
Q 048339 14 EGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPD 93 (386)
Q Consensus 14 ~~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e~l~~vH~~~ 93 (386)
|+++.++||++|++|.++.+ |||+|+|++++++.|++.++...+++++|++|+.++|++||+++
T Consensus 1 m~~t~~vy~~~~~~h~~g~~----------------Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~ 64 (375)
T 1c3p_A 1 MKKVKLIGTLDYGKYRYPKN----------------HPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTED 64 (375)
T ss_dssp -CCEEEEECGGGGGSCCCTT----------------CGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHH
T ss_pred CceEEEEECHHHcCCCCCCC----------------CCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHH
Confidence 45789999999999998863 99999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHhhcCC---c-----cc-cCCcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCC--CCCCCCCCC
Q 048339 94 YINELVEADKAGG---K-----MV-CDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPG--HHAQPTMAD 162 (386)
Q Consensus 94 Yl~~l~~~~~~~~---~-----~~-~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppG--HHA~~~~~~ 162 (386)
||++|++.+.... . .+ +.||++++++|++|++++|++|.|++.+++|+ +.+|||| |||.+++++
T Consensus 65 Yv~~l~~~~~~~~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~-----~a~~ppGG~HHA~~~~a~ 139 (375)
T 1c3p_A 65 YINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN-----VAFNPAGGMHHAFKSRAN 139 (375)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC-----EEEETTCCCTTCBTTBCB
T ss_pred HHHHHHHhccccCCChHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC-----ceeecCcccceeeeccCC
Confidence 9999998775321 1 13 67999999999999999999999999999986 3357888 999999999
Q ss_pred CccccchHHHHHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCCcccC-CCCCCce
Q 048339 163 GYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELG-EGEGFGY 241 (386)
Q Consensus 163 GFC~~NnvAiAa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~~e~G-~g~g~g~ 241 (386)
|||+|||+||||++|+++|.+||+|||||||||||||+|||+||+|||+|+|+++. .|||+||..+|+| .|+|+|+
T Consensus 140 GFC~fNnvAiAa~~l~~~g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~---~ffPgtG~~~e~G~~g~g~g~ 216 (375)
T 1c3p_A 140 GFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPE---YAFPFEKGFLEEIGEGKGKGY 216 (375)
T ss_dssp TTBSSCHHHHHHHHHHHTTCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTT---TSTTSSSCCTTCCCCGGGTTS
T ss_pred CceeecHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCC---CCCCCCCCccccCCcCCCCce
Confidence 99999999999999999899999999999999999999999999999999999743 2589999999999 9999999
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEE
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLI 321 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~ 321 (386)
++|||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||+|.++||+++|.++++.|+++|. |+++
T Consensus 217 ~vNvPL~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~-----~vv~ 291 (375)
T 1c3p_A 217 NLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFG-----EGVY 291 (375)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHC-----SCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhcc-----ceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999983 6999
Q ss_pred EeCCCCCCCcHHHHHHHHHHHHhCCCcC
Q 048339 322 VQEGGYHVTYSAYCLHATLEGVLNLPLA 349 (386)
Q Consensus 322 vleGGY~~~~~~~~~~~~~~~l~~~~~~ 349 (386)
+|||||++.++++||.++++.|+|.+.|
T Consensus 292 vleGGY~~~~l~~~~~~~~~~l~g~~~~ 319 (375)
T 1c3p_A 292 LGGGGYHPYALARAWTLIWCELSGREVP 319 (375)
T ss_dssp ECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred EECCCCChHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999997643
No 9
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=3e-86 Score=660.04 Aligned_cols=315 Identities=24% Similarity=0.390 Sum_probs=282.4
Q ss_pred CCCCCCCCCCCcEEEEEcccccCccCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhCCCCCCceeecCCCCCHH
Q 048339 5 PSEPPSPAAEGIINVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIP 84 (386)
Q Consensus 5 ~~~~~~~~~~~~~~ivyde~~l~H~~~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~l~~~~~~~~~~~as~e 84 (386)
+|.+.+.+.++++.+|||++|++|.. .|||+|+|++++.++|++.++...+++++|++|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~y~~~~~~~~~------------------~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e 65 (388)
T 3ew8_A 4 PEEPADSGQSLVPVYIYSPEYVSMCD------------------SLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASME 65 (388)
T ss_dssp ----------CCCEEECCHHHHHHHT------------------TCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHH
T ss_pred ccCCcccCCCCcEEEEEChHHhccCC------------------CCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHH
Confidence 45566777778899999999999852 399999999999999999999888999999999999
Q ss_pred HHhccCCHHHHHHHHHHhhcCC--------ccccCCcccCcChHHHHHHHHHHHHHHHHHHHhcccceEEeecCCCC-CC
Q 048339 85 QLLSFHTPDYINELVEADKAGG--------KMVCDGTVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPG-HH 155 (386)
Q Consensus 85 ~l~~vH~~~Yl~~l~~~~~~~~--------~~~~~~t~~~~~~~~~a~~aaG~~l~a~~~v~~g~~~~af~l~rppG-HH 155 (386)
+|++||+++||++|++.+..+. ..++.||++++++|++|++++|++|.|++.+++|+.++| +.|||| ||
T Consensus 66 ~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~A--i~~pGG~HH 143 (388)
T 3ew8_A 66 EMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA--INWSGGWHH 143 (388)
T ss_dssp HHTTTSCHHHHHHHHHHHHHC--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEE--EETTCCCTT
T ss_pred HHHhhCCHHHHHHHHHhcccccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCcee--eecCCcccc
Confidence 9999999999999998765321 124568999999999999999999999999999987654 567888 99
Q ss_pred CCCCCCCCccccchHHHHHHHHHhcCCCeEEEEEecccCCCCceeCceecCCEEEEeccCCCCCCCCCCCCCCCCcccCC
Q 048339 156 AQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGE 235 (386)
Q Consensus 156 A~~~~~~GFC~~NnvAiAa~~~~~~g~~RV~IvD~DvHHGnGtq~if~~d~~Vl~iSiH~~~~~~~~~~P~tg~~~e~G~ 235 (386)
|.+++++|||+|||+||||+++++ +.+||+|||||||||||||+|||+||+|||+|+|+++. ++||+||..+|+|.
T Consensus 144 A~~~~a~GFC~~NdiaiAa~~l~~-~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~---~~fPgtG~~~e~G~ 219 (388)
T 3ew8_A 144 AKKDEASGFCYLNDAVLGILRLRR-KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSP---GFFPGTGDVSDVGL 219 (388)
T ss_dssp CBTTBCBTTBSSCHHHHHHHHHTT-TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCT---TCTTCCCCTTCCCC
T ss_pred eeecCCCCchhhhHHHHHHHHHHh-cCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCC---CCCCCCCCcccccC
Confidence 999999999999999999999986 47999999999999999999999999999999999743 46999999999999
Q ss_pred CCCCceeeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcC
Q 048339 236 GEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYS 315 (386)
Q Consensus 236 g~g~g~~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~ 315 (386)
|+|+||++|||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||+|.++||.++|.++++.|+++
T Consensus 220 g~g~g~~vNvPL~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~----- 294 (388)
T 3ew8_A 220 GKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQW----- 294 (388)
T ss_dssp GGGTTSEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTT-----
T ss_pred CCCcceeeeccCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCcEEEEeCCCCCCCcHHHHHHHHHHHHhCCCc
Q 048339 316 GGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPL 348 (386)
Q Consensus 316 ~g~vv~vleGGY~~~~~~~~~~~~~~~l~~~~~ 348 (386)
+.|+++++||||++.++++||..+...++|.+.
T Consensus 295 ~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l 327 (388)
T 3ew8_A 295 QLATLILGGGGYNLANTARCWTYLTGVILGKTL 327 (388)
T ss_dssp CCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEECCCCChhHHHHHHHHHHHHHcCCCC
Confidence 479999999999999999999999999998763
No 10
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=78.79 E-value=12 Score=31.80 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=34.7
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHH-HHHHHHH
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREM-GRIVRSL 310 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~-~~~l~~~ 310 (386)
..|.....+++....+..+++ .+...+||+|++..|.. | +..+.+.|.+- .++|..+
T Consensus 48 v~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l 105 (200)
T 4h08_A 48 VGRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKII 105 (200)
T ss_dssp EEEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHH
Confidence 344444555666666655543 45678999999999973 2 23567777653 3334333
No 11
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=67.55 E-value=22 Score=29.83 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=36.1
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEE
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLL 320 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv 320 (386)
.+|..+... +-...+..++ ..+...+||+|+|..|. |... ..+.+.|..--+.+.+..++. +.+++
T Consensus 37 v~n~g~~G~-~~~~~~~~~~----~~~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~~~~~-~~~vi 103 (190)
T 1ivn_A 37 VVNASISGD-TSQQGLARLP----ALLKQHQPRWVLVELGGNDGLR-------GFQPQQTEQTLRQILQDVKAA-NAEPL 103 (190)
T ss_dssp EEECCCTTC-CHHHHHHHHH----HHHHHHCCSEEEEECCTTTTSS-------SCCHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred EEecCCCCc-hHHHHHHHHH----HHHHhcCCCEEEEEeecccccc-------CCCHHHHHHHHHHHHHHHHHc-CCCEE
Confidence 355554332 2333444443 44556899999999997 4432 245666655333333333333 34555
Q ss_pred EE
Q 048339 321 IV 322 (386)
Q Consensus 321 ~v 322 (386)
++
T Consensus 104 l~ 105 (190)
T 1ivn_A 104 LM 105 (190)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 12
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=66.67 E-value=15 Score=30.54 Aligned_cols=67 Identities=9% Similarity=0.234 Sum_probs=36.7
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEE
Q 048339 243 LNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLI 321 (386)
Q Consensus 243 ~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~ 321 (386)
+|...+. .+..+.+..++. .+..++||+|+|..|. |... ..+.+.|..--+.+.+.+++. +.++++
T Consensus 42 ~n~g~~G-~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~-~~~vvl 108 (185)
T 3hp4_A 42 INASISG-ETSGGALRRLDA----LLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAA-NAMTAL 108 (185)
T ss_dssp EECCCTT-CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred EECCcCC-ccHHHHHHHHHH----HHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHc-CCeEEE
Confidence 4545433 334445544443 4456899999999997 5433 245566665333333444443 345544
Q ss_pred E
Q 048339 322 V 322 (386)
Q Consensus 322 v 322 (386)
+
T Consensus 109 ~ 109 (185)
T 3hp4_A 109 M 109 (185)
T ss_dssp E
T ss_pred E
Confidence 4
No 13
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=65.75 E-value=12 Score=34.05 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=28.5
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCC
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGR 292 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~ 292 (386)
.+|......+ -.+.+..++++ +.. ...+||+|+|..|. |.....|.+.
T Consensus 61 v~N~G~~G~t-t~~~~~~~~~~-l~~-~~~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 61 PFVYGISGRQ-WDDVPRQAEKL-KKE-HGGEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp EEECCCTTCC-GGGHHHHHHHH-HHH-HTTTCCEEEEECCHHHHHTTCCCCC
T ss_pred EEEeecCCCC-HHHHHHHHHHH-Hhc-cCCCCCEEEEEEecccCcccCCCcc
Confidence 3555554333 23355555552 221 23799999999999 7776666553
No 14
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=64.05 E-value=6.3 Score=34.32 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=24.8
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCC
Q 048339 243 LNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAF 287 (386)
Q Consensus 243 ~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~ 287 (386)
+|..+.. .+-.+.+..|++. +..++||+|||..|. |...+
T Consensus 54 iN~Gi~G-~tt~~~l~r~~~~----v~~~~Pd~vvi~~G~ND~~~~ 94 (209)
T 4hf7_A 54 IGRGISG-QTSYQFLLRFRED----VINLSPALVVINAGTNDVAEN 94 (209)
T ss_dssp EEEECTT-CCHHHHHHHHHHH----TGGGCCSEEEECCCHHHHTTS
T ss_pred EEeccCc-ccHHHHHHHHHHH----HHhcCCCEEEEEeCCCcCccc
Confidence 5555533 3334455555443 345899999999998 65543
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=60.22 E-value=16 Score=30.81 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=38.0
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEE
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLL 320 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv 320 (386)
.+|..+... +-.+.+..++ ..+..++||+|+|..|. |...... ..+.+.|..-.+.+.+.+++ .+.+++
T Consensus 49 v~n~g~~G~-~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~i~~~~~-~~~~vi 118 (204)
T 3p94_A 49 FVDRGISGQ-TTSEMLVRFR----QDVINLKPKAVVILAGINDIAHNNG----VIALENVFGNLVSMAELAKA-NHIKVI 118 (204)
T ss_dssp EEEEECTTC-CHHHHHHHHH----HHTGGGCEEEEEEECCHHHHTTTTS----CCCHHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred eEEcccCcc-cHHHHHHHHH----HHHHhCCCCEEEEEeecCccccccC----CCCHHHHHHHHHHHHHHHHh-CCCeEE
Confidence 355555433 3344444443 33456899999999998 5554321 24566666533333333333 245555
Q ss_pred EE
Q 048339 321 IV 322 (386)
Q Consensus 321 ~v 322 (386)
++
T Consensus 119 l~ 120 (204)
T 3p94_A 119 FC 120 (204)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 16
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=58.64 E-value=24 Score=30.80 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=27.2
Q ss_pred HHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHH-HHHHHHHHHhhcCCCcEEEE
Q 048339 268 IQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYRE-MGRIVRSLADRYSGGRLLIV 322 (386)
Q Consensus 268 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~-~~~~l~~~a~~~~~g~vv~v 322 (386)
+...+||+|||..|. |.. .+.+.|.. +.++|..+.....+.+|+++
T Consensus 89 l~~~~pd~vvi~~G~ND~~---------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~ 136 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG---------HTAEQVTGGIKAIVQLVNERQPQARVVVL 136 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT---------SCHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cccCCCCEEEEEeecCCCC---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEe
Confidence 445799999999998 443 45555554 44444444433334455554
No 17
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=57.74 E-value=9 Score=33.14 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=38.0
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCC-CCCCCCCCcCCHHHHHH-HHHHHHHHHhhcCCCcE
Q 048339 243 LNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSS-AFDPNGRQCLTMDGYRE-MGRIVRSLADRYSGGRL 319 (386)
Q Consensus 243 ~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~-~~Dplg~~~lt~~gy~~-~~~~l~~~a~~~~~g~v 319 (386)
+|..++. .+-.+.+..++..+++.+...+||+|+|+.|. |.. ..+ ....+.+.|.. +.++|..+... .++
T Consensus 60 ~n~g~~G-~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~~~---~~i 132 (218)
T 1vjg_A 60 YNLGIRR-DTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAKKL---YPV 132 (218)
T ss_dssp EEEECTT-CCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHHHH---SCE
T ss_pred EeCCCCC-cCHHHHHHHhHHhhhhhhccCCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHHHh---CcE
Confidence 4555543 33444555554333222223699999999998 554 111 12345666654 44444444333 466
Q ss_pred EEEe
Q 048339 320 LIVQ 323 (386)
Q Consensus 320 v~vl 323 (386)
+++.
T Consensus 133 il~~ 136 (218)
T 1vjg_A 133 LMIS 136 (218)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6653
No 18
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=55.19 E-value=54 Score=30.62 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Q 048339 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGY 327 (386)
Q Consensus 255 ~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY 327 (386)
++...|++. +|.+++|+-..|||-.|-.+..++ +-...+.+.|..+.+. +.++|+|.+||-
T Consensus 9 ~~~~~~~~a-~pyi~~~~~k~iVIKlGGs~l~~~---------~~~~~~~~~i~~l~~~--G~~vVlVhGgG~ 69 (300)
T 2buf_A 9 QVAKVLSEA-LPYIRRFVGKTLVIKYGGNAMESE---------ELKAGFARDVVLMKAV--GINPVVVHGGGP 69 (300)
T ss_dssp HHHHHHHHH-HHHHHHHTTCEEEEEECCTTTTSS---------HHHHHHHHHHHHHHHT--TCEEEEEECCCH
T ss_pred HHHHHHHHH-hHHHHHhcCCeEEEEECchhhCCc---------hHHHHHHHHHHHHHHC--CCeEEEEECCcH
Confidence 677888876 699999999999999997776542 3344566666666442 457888888863
No 19
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=52.95 E-value=19 Score=35.65 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCC
Q 048339 254 RGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGG 326 (386)
Q Consensus 254 ~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGG 326 (386)
.++...|++. +|.+++|+-..|||-.|-.+..++ ....+.+.|..+.+. +.++|+|.+||
T Consensus 25 ~~~~~~~~~~-~~yi~~~~~~~iViK~GG~~l~~~----------~~~~~~~~i~~l~~~--g~~vvlVhggg 84 (456)
T 3d2m_A 25 DSFVAHFREA-APYIRQMRGTTLVAGIDGRLLEGG----------TLNKLAADIGLLSQL--GIRLVLIHGAY 84 (456)
T ss_dssp CCHHHHHHHH-HHHHHHHTTCEEEEEECGGGGTST----------HHHHHHHHHHHHHHT--TCEEEEEECCH
T ss_pred hHHHHHHHHh-HHHHHHhcCCEEEEEEChHHhcCc----------hHHHHHHHHHHHHHC--CCeEEEEeCCc
Confidence 4688888887 699999999999999997766431 144566666665432 45788888887
No 20
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=51.61 E-value=51 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHhcCC-CEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhc------CCCcEEEEe
Q 048339 266 PAIQKFEP-NMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRY------SGGRLLIVQ 323 (386)
Q Consensus 266 p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~------~~g~vv~vl 323 (386)
..+..++| |+|||..|. |.... ...+.+.|..--+.+.+.+++. .+.+|+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtND~~~~-----~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~ 154 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTNDIKPV-----HGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVA 154 (232)
T ss_dssp HHHHHHCSCSEEEEECCTTTTSGG-----GTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEE
T ss_pred HHHhhCCCCCEEEEEeccCCCccc-----cCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEe
Confidence 45567899 999999997 44332 2346676665333333333343 345666554
No 21
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=51.34 E-value=57 Score=27.90 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=38.7
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcE
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQK-FEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRL 319 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~-f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~v 319 (386)
.+|..+.. .+-...+..+++ .+.. .+||+|+|..|. |..... ....+.+.|..--+.+.+..++. +.++
T Consensus 46 v~n~g~~G-~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~l~~~i~~~~~~-~~~v 116 (240)
T 3mil_A 46 ILQRGFKG-YTSRWALKILPE----ILKHESNIVMATIFLGANDACSAG---PQSVPLPEFIDNIRQMVSLMKSY-HIRP 116 (240)
T ss_dssp EEEEECTT-CCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSSS---TTCCCHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred EEecCcCc-ccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCccC---CCCCCHHHHHHHHHHHHHHHHHc-CCeE
Confidence 34554433 333445554443 3343 699999999998 554321 23456777765333333333343 3455
Q ss_pred EEEe
Q 048339 320 LIVQ 323 (386)
Q Consensus 320 v~vl 323 (386)
+++.
T Consensus 117 il~~ 120 (240)
T 3mil_A 117 IIIG 120 (240)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 22
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=51.15 E-value=13 Score=31.51 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=32.6
Q ss_pred HHHHhcCCCEEEEeecC-CCCCCCCCC---CCcCCHHHHHHHHHHHHHHHhhcCCCcEEEE
Q 048339 266 PAIQKFEPNMIVLVVGQ-DSSAFDPNG---RQCLTMDGYREMGRIVRSLADRYSGGRLLIV 322 (386)
Q Consensus 266 p~~~~f~PdlIvvsaG~-D~~~~Dplg---~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~v 322 (386)
..+...+||+|+|..|. |.....+.+ ....+.+.|..--+.+.+.+++. +.+++++
T Consensus 77 ~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~vil~ 136 (216)
T 3rjt_A 77 DDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR-VREMFLL 136 (216)
T ss_dssp HHTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG-SSEEEEE
T ss_pred hHHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 44557899999999998 554322111 12456677766444444455444 4565555
No 23
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=49.44 E-value=48 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=24.8
Q ss_pred HHHHhcCC-CEEEEeecC-CCCCCCCCCCCcCCHHHHHH-HHHHHHHH
Q 048339 266 PAIQKFEP-NMIVLVVGQ-DSSAFDPNGRQCLTMDGYRE-MGRIVRSL 310 (386)
Q Consensus 266 p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~gy~~-~~~~l~~~ 310 (386)
..+..++| |+|+|..|. |... ....+.+.|.. +.++|..+
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~~~-----~~~~~~~~~~~~l~~li~~~ 118 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDTKA-----YFRRTPLDIALGMSVLVTQV 118 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGGSG-----GGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEEEecCcccch-----hcCCCHHHHHHHHHHHHHHH
Confidence 34566888 999999998 5432 12356666665 34444443
No 24
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=48.71 E-value=56 Score=26.82 Aligned_cols=68 Identities=15% Similarity=0.298 Sum_probs=35.9
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEE
Q 048339 243 LNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLI 321 (386)
Q Consensus 243 ~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~ 321 (386)
+|..++. .+-.+.+..+++ .+...+||+|||+.|. |.. .....+.+.|..--+.+.+... +.++++
T Consensus 43 ~n~g~~G-~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~-----~~~~~~~~~~~~~l~~~i~~~~---~~~vi~ 109 (195)
T 1yzf_A 43 INAGMPG-DTTEDGLKRLNK----EVLIEKPDEVVIFFGANDAS-----LDRNITVATFRENLETMIHEIG---SEKVIL 109 (195)
T ss_dssp EEEECTT-CCHHHHHHHHHH----HTGGGCCSEEEEECCTTTTC-----TTSCCCHHHHHHHHHHHHHHHC---GGGEEE
T ss_pred EeCCCCC-CCHHHHHHHHHH----hhhhcCCCEEEEEeeccccC-----ccCCCCHHHHHHHHHHHHHHhc---CCEEEE
Confidence 4555543 333444444433 3456899999999997 433 1124566666543222222222 345555
Q ss_pred Ee
Q 048339 322 VQ 323 (386)
Q Consensus 322 vl 323 (386)
+.
T Consensus 110 ~~ 111 (195)
T 1yzf_A 110 IT 111 (195)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 25
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=45.84 E-value=48 Score=30.49 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC
Q 048339 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYH 328 (386)
Q Consensus 255 ~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~ 328 (386)
++...|++. +|.+++|+-..|||-.|-.+..+ .+.+..+.+.|..+.+. +.++++|.+||-.
T Consensus 4 ~~~~~~~~~-~pyi~~~~~~~iViKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEA-LPYIKEFYGKTFVIKFGGSAMKQ---------ENAKKAFIQDIILLKYT--GIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHH-HHHHHHHTTCEEEEEECSHHHHS---------HHHHHHHHHHHHHHHHT--TCEEEEEECCSHH
T ss_pred HHHHHHHHH-HHHHHHhcCCeEEEEECchhhCC---------hhHHHHHHHHHHHHHHC--CCcEEEEECCcHH
Confidence 466778876 69999999999999998655432 34455666777666542 4578888888643
No 26
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=45.20 E-value=23 Score=32.80 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCC
Q 048339 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAF 287 (386)
Q Consensus 255 ~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~ 287 (386)
.+...+.+.|..++++++||+||.-.|.|.|.+
T Consensus 131 ~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD 163 (273)
T 3dff_A 131 DLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD 163 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCCCCCChH
Confidence 355566667788999999999999888777753
No 27
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=43.99 E-value=38 Score=29.08 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHH
Q 048339 252 GDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRS 309 (386)
Q Consensus 252 ~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~ 309 (386)
.-.+.+..++. .+...+||+|+|..|. |...+. ....+.|.++.+.+++
T Consensus 67 ~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~~~~-----~~~~~~l~~li~~i~~ 116 (215)
T 2vpt_A 67 TIPQIASNINN----WLNTHNPDVVFLWIGGNDLLLNG-----NLNATGLSNLIDQIFT 116 (215)
T ss_dssp CHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHHHC-----CCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HhhccCCCEEEEEccccccCCCC-----ChhHHHHHHHHHHHHH
Confidence 33445554443 3446899999999998 554322 2235666666555554
No 28
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=43.42 E-value=27 Score=32.25 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCC
Q 048339 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAF 287 (386)
Q Consensus 255 ~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~ 287 (386)
.+...+.+.|..++++++||+|+.-.|.|.|.+
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpD 160 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPD 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChh
Confidence 345556666788999999999999888877753
No 29
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=42.94 E-value=30 Score=33.77 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHH-HHHHHHHHHhhcCCCcEEEEe
Q 048339 266 PAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYRE-MGRIVRSLADRYSGGRLLIVQ 323 (386)
Q Consensus 266 p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~-~~~~l~~~a~~~~~g~vv~vl 323 (386)
..+.+.+||+|||..|. |...+ ++.+.|.. +.++|..+-+.+.+.+|+++.
T Consensus 238 ~~l~~~~pdlVvI~lGtND~~~~-------~~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 238 RLIRDLPADLISLRVGTSNFMDG-------DGFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHSCCSEEEEEESHHHHTTT-------CCTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHhccCCCEEEEEeeccCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 34567899999999998 55432 33444433 444444444444455665544
No 30
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=42.74 E-value=26 Score=30.36 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=31.5
Q ss_pred cCCCEEEEeecC-CCCCCCCCCCCc-CCHHHH-HHHHHHHHHHHhhcCCCcEEEEe
Q 048339 271 FEPNMIVLVVGQ-DSSAFDPNGRQC-LTMDGY-REMGRIVRSLADRYSGGRLLIVQ 323 (386)
Q Consensus 271 f~PdlIvvsaG~-D~~~~Dplg~~~-lt~~gy-~~~~~~l~~~a~~~~~g~vv~vl 323 (386)
.+||+|+|..|. |...+-+.+.+. .+.+.| ..+.++|..+-....+.+|+++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 499999999998 766655555442 122222 24455555555554456776654
No 31
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=42.56 E-value=48 Score=30.90 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC
Q 048339 252 GDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYH 328 (386)
Q Consensus 252 ~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~ 328 (386)
....+...|++. +|.+++|+-..|||-.|-.+..+ .+....+.+.|..+.+. +.++++|.+||-.
T Consensus 5 ~~~~~~~~~~~a-~pyi~~~~~k~iViKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vViVhGgG~~ 69 (299)
T 2ap9_A 5 PTHIKAQVLAEA-LPWLKQLHGKVVVVKYGGNAMTD---------DTLRRAFAADMAFLRNC--GIHPVVVHGGGPQ 69 (299)
T ss_dssp CHHHHHHHHHHH-HHHHHHHTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHHTT--TCEEEEEECCSHH
T ss_pred ChhhHHHHHHHH-HHHHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHHHC--CCcEEEEECCcHH
Confidence 356788888887 69999999999999998655432 23444566666665432 4578888888643
No 32
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=42.51 E-value=36 Score=31.81 Aligned_cols=62 Identities=27% Similarity=0.249 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Q 048339 254 RGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGY 327 (386)
Q Consensus 254 ~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY 327 (386)
..+...|++. +|.+++|+-..|||-.|--+..+ .+....+.+.|..+.+. +.++++|.+||-
T Consensus 18 ~~~~~~~~~a-~pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vViVhGgG~ 79 (298)
T 2rd5_A 18 DYRVEILSES-LPFIQKFRGKTIVVKYGGAAMTS---------PELKSSVVSDLVLLACV--GLRPILVHGGGP 79 (298)
T ss_dssp CHHHHHHHHT-HHHHHHTTTCEEEEEECTHHHHC---------HHHHHHHHHHHHHHHHT--TCEEEEEECCHH
T ss_pred HHHHHHHHHH-HHHHHHhcCCEEEEEECchhhCC---------hhHHHHHHHHHHHHHHC--CCCEEEEECCcH
Confidence 4688888887 69999999999999999655432 23445566666666542 457888888864
No 33
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=40.71 E-value=1.1e+02 Score=28.42 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC
Q 048339 254 RGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYH 328 (386)
Q Consensus 254 ~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~ 328 (386)
+++..+|+++ +..+.+.+||+||++ | |-+-.-.-+.+.+..+.+.+.++.+. +.|++++ -|--+
T Consensus 23 ~~~~~~~~~~-~~~~~~~~~D~vl~~-G------Dl~d~~~~~~~~~~~~~~~l~~l~~~--~~~v~~v-~GNHD 86 (333)
T 1ii7_A 23 EEFAEAFKNA-LEIAVQENVDFILIA-G------DLFHSSRPSPGTLKKAIALLQIPKEH--SIPVFAI-EGNHD 86 (333)
T ss_dssp HHHHHHHHHH-HHHHHHTTCSEEEEE-S------CSBSSSSCCHHHHHHHHHHHHHHHTT--TCCEEEE-CCTTT
T ss_pred HHHHHHHHHH-HHHHHhcCCCEEEEC-C------CcCCCCCCCHHHHHHHHHHHHHHHHC--CCcEEEe-CCcCC
Confidence 4566777765 467788999988774 4 32221123445566666666666532 3576544 55544
No 34
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=38.74 E-value=85 Score=30.97 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCCcHHHHHHH
Q 048339 260 MTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHA 338 (386)
Q Consensus 260 ~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~~~~~~~~ 338 (386)
+++.|..+.++|+|++|+|.... -...+|.+ ...+.++.+++ +.||+.+--.||... ..++...
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi-------------~~v~~~~~~~~-~ipVi~v~~~Gf~~~-~~~G~~~ 149 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDL-------------EGLAPKLEAEI-GIPIVVARANGLDYA-FTQGEDT 149 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCCH-------------HHHHHHHHHHH-SSCEEEEECCTTTCC-TTHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhCH-------------HHHHHHHhhcc-CCcEEEEecCCcccc-HHHHHHH
Confidence 45666778889999987776643 44455532 22334443344 579999999999864 3355555
Q ss_pred HHHHHh
Q 048339 339 TLEGVL 344 (386)
Q Consensus 339 ~~~~l~ 344 (386)
.++++.
T Consensus 150 a~~al~ 155 (460)
T 2xdq_A 150 VLAAMA 155 (460)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 35
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=38.44 E-value=73 Score=27.57 Aligned_cols=67 Identities=19% Similarity=0.379 Sum_probs=35.5
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHH-HHHHHHHHHhhcCCCcEE
Q 048339 243 LNIPLPNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYRE-MGRIVRSLADRYSGGRLL 320 (386)
Q Consensus 243 ~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~-~~~~l~~~a~~~~~g~vv 320 (386)
+|..+. |.+-.+++..+++. .+..++||+|+|..|. |. + .+.+.|.. +.++|..+-....+.+|+
T Consensus 69 ~n~g~~-G~t~~~~~~~~~~~---~l~~~~pd~vvi~~G~ND~------~---~~~~~~~~~l~~~i~~l~~~~p~~~ii 135 (229)
T 1fxw_F 69 LNFGIG-GDTTRHVLWRLKNG---ELENIKPKVIVVWVGTNNH------E---NTAEEVAGGIEAIVQLINTRQPQAKII 135 (229)
T ss_dssp EEEECT-TCCHHHHHHHHHTT---TTSSCCCSEEEEECCTTCT------T---SCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred eeeccC-cchHHHHHHHHHcC---ccccCCCCEEEEEEecCCC------C---CCHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 444443 23334444444321 2346799999999998 44 1 45555554 444444444333344555
Q ss_pred EE
Q 048339 321 IV 322 (386)
Q Consensus 321 ~v 322 (386)
++
T Consensus 136 l~ 137 (229)
T 1fxw_F 136 VL 137 (229)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 36
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=35.32 E-value=1.3e+02 Score=27.84 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCC
Q 048339 254 RGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHV 329 (386)
Q Consensus 254 ~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~ 329 (386)
++...+|+++ ...+.+.+||+||+ +| |. -.-.-..+.+.+..+.+.+.++... .|+ ++.-|--+.
T Consensus 44 ~~~~~~l~~l-v~~~~~~~~D~vli-aG-D~----l~d~~~~~~~~~~~~~~~l~~L~~~---~pv-~~i~GNHD~ 108 (336)
T 2q8u_A 44 EELKKALDKV-VEEAEKREVDLILL-TG-DL----LHSRNNPSVVALHDLLDYLKRMMRT---APV-VVLPGNHDW 108 (336)
T ss_dssp HHHHHHHHHH-HHHHHHHTCSEEEE-ES-CS----BSCSSCCCHHHHHHHHHHHHHHHHH---SCE-EECCC----
T ss_pred HHHHHHHHHH-HHHHHHhCCCEEEE-CC-cc----ccCCCCCCHHHHHHHHHHHHHHHhc---CCE-EEECCCCCc
Confidence 4556677765 47778889997776 44 30 2222223455555566677777643 365 455565443
No 37
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=34.65 E-value=59 Score=30.76 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Q 048339 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGY 327 (386)
Q Consensus 255 ~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY 327 (386)
++...|++. +|.+++|+-..|||-.|-.+..+ .+....+.+.|..+.+. +.++|+|.+||-
T Consensus 32 ~~~~~~~~a-~pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~l~~~i~~l~~~--G~~vVlVhGgG~ 92 (321)
T 2v5h_A 32 DRVRILSEA-LPYLQQFAGRTVVVKYGGAAMKQ---------EELKEAVMRDIVFLACV--GMRPVVVHGGGP 92 (321)
T ss_dssp CHHHHHHHT-HHHHHHTTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHHHT--TCEEEEEECCHH
T ss_pred hHHHHHHHH-HHHHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHHHC--CCEEEEEECCHH
Confidence 678888887 69999999999999999655432 23445566666665442 457888888863
No 38
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=33.00 E-value=53 Score=30.88 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=29.3
Q ss_pred HhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHH-HHHHHHHHHHhhcCCCcEEEEe
Q 048339 269 QKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYR-EMGRIVRSLADRYSGGRLLIVQ 323 (386)
Q Consensus 269 ~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~-~~~~~l~~~a~~~~~g~vv~vl 323 (386)
..++||+|+|..|. |..... .+.+.|. .+.++|.++-+...+.+|+++.
T Consensus 210 ~~~~PdlVvI~lGtND~~~~~------~~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTSF------ADKTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSSC------CCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCEEEEeCccccCCCCC------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999998 665443 2333333 3445555554444445665554
No 39
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=32.73 E-value=1.3e+02 Score=28.73 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCC
Q 048339 254 RGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGG 326 (386)
Q Consensus 254 ~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGG 326 (386)
.+...+|+++ +..+.+-+||+||+ +| |-...-.-+.+.+..+.+.+.++... +.|+++ .-|-
T Consensus 43 ~~~~~~l~~~-v~~~~~~~~D~Vli-aG------Dl~d~~~p~~~~~~~~~~~l~~L~~~--~~pv~~-v~GN 104 (386)
T 3av0_A 43 KDIYDSFKLC-IKKILEIKPDVVLH-SG------DLFNDLRPPVKALRIAMQAFKKLHEN--NIKVYI-VAGN 104 (386)
T ss_dssp HHHHHHHHHH-HHHHHTTCCSEEEE-CS------CSBSSSSCCHHHHHHHHHHHHHHHHT--TCEEEE-CCCG
T ss_pred HHHHHHHHHH-HHHHHHcCCCEEEE-CC------CCCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEE-EcCC
Confidence 3456677765 46777889998877 44 32222223445566666667776542 356544 4454
No 40
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=32.17 E-value=1.3e+02 Score=29.62 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcC---CCcEEEEeCCCCCCC
Q 048339 259 AMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYS---GGRLLIVQEGGYHVT 330 (386)
Q Consensus 259 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~---~g~vv~vleGGY~~~ 330 (386)
.+.+.|..+++.|+|++|+|.... -...+|. +...++++.++.. +.||+.+--.||..+
T Consensus 83 ~L~~aI~~~~~~~~P~~I~V~tTC~~e~IGdD-------------i~~v~~~~~~~~~~~~~~pvi~v~tpgf~gs 145 (458)
T 1mio_B 83 NIKTAVKNIFSLYNPDIIAVHTTCLSETLGDD-------------LPTYISQMEDAGSIPEGKLVIHTNTPSYVGS 145 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHHHTCC-------------HHHHHHHHHHTTCSCTTCEEEEECCCTTSSC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHHhcC-------------HHHHHHHHHHhcCCCCCCeEEEEECCCCccc
Confidence 345556677889999998877642 3333332 2223333333321 456777777777753
No 41
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=30.72 E-value=88 Score=30.04 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=39.1
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcE
Q 048339 242 NLNIPLPNGTGDRGYVHAMTELVVPAIQKFEP-NMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRL 319 (386)
Q Consensus 242 ~~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~v 319 (386)
.+|..+... .-.+++.. ..+.+.+.+++| |+|||+.|. |.... ...+.+.|..--+.+.+.+++. +.++
T Consensus 202 v~N~GisG~-tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~~-----~~~~~~~~~~~l~~ii~~lr~~-~a~v 272 (375)
T 2o14_A 202 VRNMASGGQ-IARGFRND--GQLEAILKYIKPGDYFMLQLGINDTNPK-----HKESEAEFKEVMRDMIRQVKAK-GADV 272 (375)
T ss_dssp EEECCCTTC-CHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCGG-----GCCCHHHHHHHHHHHHHHHHTT-TCEE
T ss_pred EEEeccCCC-cHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCcc-----CCCCHHHHHHHHHHHHHHHHHC-CCEE
Confidence 567666433 33334420 123345678899 999999998 55432 2245666665433333444443 3455
Q ss_pred EEE
Q 048339 320 LIV 322 (386)
Q Consensus 320 v~v 322 (386)
+++
T Consensus 273 ilv 275 (375)
T 2o14_A 273 ILS 275 (375)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 42
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=29.39 E-value=1.7e+02 Score=27.91 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCC-CCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC
Q 048339 253 DRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPN-GRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYH 328 (386)
Q Consensus 253 d~~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dpl-g~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~ 328 (386)
..+...+|+++ ...+.+.+||+||+ +| |-+ -.-..+.+.+..+.+.+.++... .|+ ++..|--+
T Consensus 25 ~~~~~~~l~~l-~~~~~~~~~D~vli-aG------Dl~hd~~~~~~~~~~~~~~~l~~l~~~---~~v-~~i~GNHD 89 (379)
T 3tho_B 25 REELKKALDKV-VEEAEKREVDLILL-TG------DLLHSRNNPSVVALHDLLDYLKRMMRT---APV-VVLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHH-HHHHHHHTCSEEEE-CS------CCBSCSSSCCHHHHHHHHHHHHHHHHH---SCE-EECCCTTS
T ss_pred hHHHHHHHHHH-HHHHHhcCCCEEEE-CC------CccccCCCCCHHHHHHHHHHHHHHHhC---CCE-EEEcCCCc
Confidence 34567777664 57788899999988 44 433 23345667777777778777654 365 55666555
No 43
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=29.24 E-value=40 Score=29.34 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.0
Q ss_pred CeEEEEEecccCCCC
Q 048339 183 GKVVVIDIDVHYGNG 197 (386)
Q Consensus 183 ~RV~IvD~DvHHGnG 197 (386)
+||++||+|..+|+=
T Consensus 32 ~~VlliD~D~~~~~l 46 (237)
T 1g3q_A 32 RKVLAVDGDLTMANL 46 (237)
T ss_dssp CCEEEEECCTTSCCH
T ss_pred CeEEEEeCCCCCCCh
Confidence 699999999988763
No 44
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=28.31 E-value=42 Score=31.78 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=26.9
Q ss_pred hcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHH-HHHHHHHHHHhhcCCCcEEEE
Q 048339 270 KFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYR-EMGRIVRSLADRYSGGRLLIV 322 (386)
Q Consensus 270 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~-~~~~~l~~~a~~~~~g~vv~v 322 (386)
.++||+|||..|. |..... .+.+.|. .+.++|..+-+...+.+|+++
T Consensus 223 ~~~Pd~VvI~lG~ND~~~~~------~~~~~~~~~l~~li~~ir~~~p~~~I~l~ 271 (347)
T 2waa_A 223 RYQPDLIISAIGTNDFSPGI------PDRATYINTYTRFVRTLLDNHPQATIVLT 271 (347)
T ss_dssp GCCCSEEEECCCHHHHSSSC------CCHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred cCCCCEEEEEccccCCCCCC------CcHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 6799999999998 665432 2333333 344445444444444455443
No 45
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.30 E-value=1.6e+02 Score=29.12 Aligned_cols=70 Identities=10% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhc---CCCcEEEEeCCCCCCCcHHHH
Q 048339 260 MTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRY---SGGRLLIVQEGGYHVTYSAYC 335 (386)
Q Consensus 260 ~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~---~~g~vv~vleGGY~~~~~~~~ 335 (386)
+.+.|..+.++|+|++|+|.... -...+|. +...++++.+++ .+.||+.+--.||..+. ..+
T Consensus 80 L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdD-------------i~~v~~~~~~~~~~~~~~pVi~v~tpgf~gs~-~~G 145 (458)
T 3pdi_B 80 VVEALKTICERQNPSVIGLLTTGLSETQGCD-------------LHTALHEFRTQYEEYKDVPIVPVNTPDFSGCF-ESG 145 (458)
T ss_dssp HHHHHHHHHHHTCCSEEEEEECHHHHTTCTT-------------HHHHHHHTTTSCCSCSCSCEEEECCCTTSSCH-HHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcHHHHhcCC-------------HHHHHHHHHHhccccCCCeEEEeeCCCcCCch-hHH
Confidence 44555667788999998887653 3444443 233344443332 25789999999998753 334
Q ss_pred HHHHHHHH
Q 048339 336 LHATLEGV 343 (386)
Q Consensus 336 ~~~~~~~l 343 (386)
....++++
T Consensus 146 ~~~a~~al 153 (458)
T 3pdi_B 146 FAAAVKAI 153 (458)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 46
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=28.17 E-value=43 Score=29.24 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCeEEEEEecccCCCCce
Q 048339 182 CGKVVVIDIDVHYGNGTA 199 (386)
Q Consensus 182 ~~RV~IvD~DvHHGnGtq 199 (386)
-+||++||+|...||=+.
T Consensus 34 g~~VlliD~D~~~~~l~~ 51 (245)
T 3ea0_A 34 DIHVLAVDISLPFGDLDM 51 (245)
T ss_dssp TCCEEEEECCTTTCCGGG
T ss_pred CCCEEEEECCCCCCCHHH
Confidence 479999999999887554
No 47
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=27.58 E-value=44 Score=29.67 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.1
Q ss_pred CeEEEEEecccCCCC
Q 048339 183 GKVVVIDIDVHYGNG 197 (386)
Q Consensus 183 ~RV~IvD~DvHHGnG 197 (386)
+||++||+|..+||=
T Consensus 32 ~~VlliD~D~~~~~l 46 (263)
T 1hyq_A 32 HDVTIVDADITMANL 46 (263)
T ss_dssp CCEEEEECCCSSSSH
T ss_pred CcEEEEECCCCCCCc
Confidence 699999999988873
No 48
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=26.08 E-value=48 Score=29.17 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=13.4
Q ss_pred CeEEEEEecccCCCCc
Q 048339 183 GKVVVIDIDVHYGNGT 198 (386)
Q Consensus 183 ~RV~IvD~DvHHGnGt 198 (386)
+||++||+|..++|=+
T Consensus 32 ~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 32 KKTVVIDFAIGLRNLD 47 (260)
T ss_dssp CCEEEEECCCSSCCHH
T ss_pred CcEEEEECCCCCCChh
Confidence 6999999999887743
No 49
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=25.43 E-value=3.4e+02 Score=25.71 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcC--CCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCC
Q 048339 256 YVHAMTELVVPAIQKFE--PNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVT 330 (386)
Q Consensus 256 y~~~~~~~l~p~~~~f~--PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~ 330 (386)
+...+.+.+..++++|+ |+.|++..+ ..|.+ ..+...+..+.+.+....++....++|+|..-+|+..
T Consensus 118 ~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~--~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~~ 187 (345)
T 3jug_A 118 DLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYG--SWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQY 187 (345)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCC--SSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTTB
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCC--CCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCcccc
Confidence 44445455555666664 455656654 56766 3344445444444444444443334555555566654
No 50
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=25.26 E-value=54 Score=28.44 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=12.4
Q ss_pred cCCCeEEEEEecccCCC
Q 048339 180 SGCGKVVVIDIDVHYGN 196 (386)
Q Consensus 180 ~g~~RV~IvD~DvHHGn 196 (386)
.| +||++||+|.. |+
T Consensus 27 ~g-~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 27 DY-DKIYAVDGDPD-SC 41 (254)
T ss_dssp TC-SCEEEEEECTT-SC
T ss_pred CC-CeEEEEeCCCC-cC
Confidence 35 79999999995 65
No 51
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=24.94 E-value=1.7e+02 Score=28.95 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH
Q 048339 255 GYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLA 311 (386)
Q Consensus 255 ~y~~~~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a 311 (386)
+....|+++ +..+.+.+||+||+ +| |-+-.-..+.+.+..+.+.+.+++
T Consensus 55 d~~~~l~~l-l~~~~~~~~D~Vli-aG------Dlfd~~~~~~~~~~~~~~~L~r~~ 103 (431)
T 3t1i_A 55 DTFVTLDEI-LRLAQENEVDFILL-GG------DLFHENKPSRKTLHTCLELLRKYC 103 (431)
T ss_dssp HHHHHHHHH-HHHHHHTTCSEEEE-CS------CCBSSSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHhhcCCCEEEE-cC------ccccCCCCCHHHHHHHHHHHHHHh
Confidence 455667665 57788899999998 44 333333356677777777777765
No 52
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=24.59 E-value=2.6e+02 Score=28.02 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcC-CCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCC
Q 048339 259 AMTELVVPAIQKFE-PNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHV 329 (386)
Q Consensus 259 ~~~~~l~p~~~~f~-PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~ 329 (386)
.+.+.|..+.+.|+ |++|+|.... ....+|.+ ...++++.++. +.||+.+--.||..
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl-------------~~v~~~~~~~~-~~pVi~v~tpgf~g 188 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDI-------------ESVSKVKGAEL-SKTIVPVRCEGFRG 188 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCCH-------------HHHHHHHHHHH-TCCEEEECCCTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcCH-------------HHHHHHHHHhh-CCcEEEecCCCCCC
Confidence 34555667788999 9988777643 44445432 23344444444 57999999999997
No 53
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.55 E-value=1.4e+02 Score=30.27 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCCcHH----
Q 048339 259 AMTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSA---- 333 (386)
Q Consensus 259 ~~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~~~---- 333 (386)
.+.+.|..+.+.|+|++|+|.... -...+|. +...+.++.++. +.||+.+---||...+-.
T Consensus 121 kL~~aI~~~~~~~~P~~I~V~tTC~~eiIGdD-------------i~~v~~~~~~~~-~~pVi~v~tpGf~g~s~~~G~~ 186 (533)
T 1mio_A 121 KLKDAIHEAYEMFHPAAIGVYATCPVGLIGDD-------------ILAVAATASKEI-GIPVHAFSCEGYKGVSQSAGHH 186 (533)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCHHHHHHTCC-------------HHHHHHHHHHHH-SSCEEECCCCTTSSSSTHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCHHHHhcCC-------------HHHHHHHHHHhh-CCcEEEEeCCCCcCcchhHHHH
Confidence 455666778899999998887653 3333333 223334443344 578999988988873322
Q ss_pred HHHHHHHHHHhC
Q 048339 334 YCLHATLEGVLN 345 (386)
Q Consensus 334 ~~~~~~~~~l~~ 345 (386)
.++.++++.+.+
T Consensus 187 ~a~~al~~~~~~ 198 (533)
T 1mio_A 187 IANNTVMTDIIG 198 (533)
T ss_dssp HHHHHHHHHTTB
T ss_pred HHHHHHHHHhcc
Confidence 334455555544
No 54
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.07 E-value=1.9e+02 Score=28.98 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCCc
Q 048339 260 MTELVVPAIQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTY 331 (386)
Q Consensus 260 ~~~~l~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~ 331 (386)
+.+.|..+.+.|+|++|+|.... -...+|.+ ...++++.++. +.||+.+--.||..+.
T Consensus 76 L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi-------------~~v~~~~~~~~-g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 76 VVDNIIRKDTEEHPDLIVLTPTCTSSILQEDL-------------QNFVRRASLST-TADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCHHHHTTCCCH-------------HHHHHHHHHHC-SSEEEECCCCTTTCCH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHhccCH-------------HHHHHHhhhcc-CCCEEEeeCCCcccch
Confidence 34445566788999998887654 55555543 22233333333 6799999999999754
No 55
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=22.60 E-value=2.4e+02 Score=28.41 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeec-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCCc
Q 048339 259 AMTELVVPAIQKFEPNMIVLVVG-QDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTY 331 (386)
Q Consensus 259 ~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~ 331 (386)
.+.+.|..+.+.|+|++|+|... .-...+|.+. ..++++. . +.||+.+--.||..+.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~-------------~v~~~~~-~--~~pVi~v~tpgf~g~~ 129 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN-------------GISRALN-L--PVPVVPLELPSYSRKE 129 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH-------------HHHHHHT-C--SSCEEECCCCTTTCCH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH-------------HHHHHhc-C--CCCEEEEECCCcCCch
Confidence 34455666778899997766655 5666666532 2223222 2 5789999999998753
No 56
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=22.39 E-value=2.1e+02 Score=24.89 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=24.3
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEeecC-CCCCC
Q 048339 243 LNIPLPNGTGDRGYVHAMTELVVPAIQKFEP-NMIVLVVGQ-DSSAF 287 (386)
Q Consensus 243 ~NvpL~~g~~d~~y~~~~~~~l~p~~~~f~P-dlIvvsaG~-D~~~~ 287 (386)
+|..+...+ ...++.. ..+..++...+| |+|+|+.|. |+...
T Consensus 36 ~N~gi~G~t-t~~~~~~--~r~~~~l~~~~~~d~ViI~~G~ND~~~~ 79 (233)
T 1k7c_A 36 VNDAVAGRS-ARSYTRE--GRFENIADVVTAGDYVIVEFGHNDGGSL 79 (233)
T ss_dssp EECCCTTCC-HHHHHHT--THHHHHHHHCCTTCEEEECCCTTSCSCG
T ss_pred EecccCCcc-HHHHHHc--ccHHHHHhhCCCCCEEEEEccCCCCCCc
Confidence 465554433 3445431 122344555666 999999999 66643
No 57
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=21.80 E-value=55 Score=29.16 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.8
Q ss_pred CeEEEEEecccCCCCceeCc
Q 048339 183 GKVVVIDIDVHYGNGTAEGF 202 (386)
Q Consensus 183 ~RV~IvD~DvHHGnGtq~if 202 (386)
+||++||+|.. ++.+...+
T Consensus 30 ~~VlliD~D~q-~~~~~~~~ 48 (269)
T 1cp2_A 30 KTIMVVGCDPK-ADSTRLLL 48 (269)
T ss_dssp CCEEEEEECTT-SCSSHHHH
T ss_pred CcEEEEcCCCC-CCHHHHhc
Confidence 69999999964 55555444
No 58
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.18 E-value=1.7e+02 Score=29.22 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeec-CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCCCcH---HH
Q 048339 259 AMTELVVPAIQKFEPNMIVLVVG-QDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYS---AY 334 (386)
Q Consensus 259 ~~~~~l~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~gy~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~~---~~ 334 (386)
.+.+.|..++++|+|++|+|... .-...+|.+ ...++++.++. +.||+.+---||..+.. ..
T Consensus 109 kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDl-------------~~v~~~~~~~~-~~pVi~v~tpgf~gs~~~G~~~ 174 (483)
T 3pdi_A 109 RLFHAIRQAVESYSPPAVFVYNTCVPALIGDDV-------------DAVCKAAAERF-GTPVIPVDSAGFYGTKNLGNRI 174 (483)
T ss_dssp HHHHHHHHHHHHHCCSCEEEECCHHHHHTTCCH-------------HHHHHHHHHHH-CSCEEEECCCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHhcCCH-------------HHHHHHHHHHh-CCCEEEEeCCCcccchhhHHHH
Confidence 34455667788899998877654 344455543 22334443334 57999999999987432 12
Q ss_pred HHHHHHHHHhC
Q 048339 335 CLHATLEGVLN 345 (386)
Q Consensus 335 ~~~~~~~~l~~ 345 (386)
++.++++.+.+
T Consensus 175 a~~al~~~l~~ 185 (483)
T 3pdi_A 175 AGEAMLKYVIG 185 (483)
T ss_dssp HHHHTHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 34556666654
No 59
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=20.85 E-value=72 Score=29.48 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=12.4
Q ss_pred CeEEEEEecccCCC
Q 048339 183 GKVVVIDIDVHYGN 196 (386)
Q Consensus 183 ~RV~IvD~DvHHGn 196 (386)
+||++||.|...++
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 79999999998765
No 60
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=20.79 E-value=1e+02 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHhcCCCEEEEeecC-CCCCCCCCCCCcCCHHHHHH-HHHHHHHHHhhcCCCcEEEE
Q 048339 268 IQKFEPNMIVLVVGQ-DSSAFDPNGRQCLTMDGYRE-MGRIVRSLADRYSGGRLLIV 322 (386)
Q Consensus 268 ~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~gy~~-~~~~l~~~a~~~~~g~vv~v 322 (386)
+..++||+|+|..|. |... ..+.+.|.. +.+++..+.+.....+++++
T Consensus 81 ~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 130 (214)
T 2hsj_A 81 LYGGAVDKIFLLIGTNDIGK-------DVPVNEALNNLEAIIQSVARDYPLTEIKLL 130 (214)
T ss_dssp CCCSCCCEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhcCCCEEEEEEecCcCCc-------CCCHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 345799999999997 5443 245555554 44444444333322455544
No 61
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=20.53 E-value=1.2e+02 Score=26.07 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCEEEEee
Q 048339 249 NGTGDRGYVHAMTELVVPAIQKFEPNMIVLVV 280 (386)
Q Consensus 249 ~g~~d~~y~~~~~~~l~p~~~~f~PdlIvvsa 280 (386)
+.....+=+..+.+.|..++++|+||.+.|=.
T Consensus 40 ~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~ 71 (166)
T 4ep4_A 40 PQEPAKERVGRIHARVLEVLHRFRPEAVAVEE 71 (166)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 33445555566666678999999999998854
No 62
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=20.51 E-value=60 Score=31.15 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCCceeec---CCCCCHHHHhcc--CCHHHHHHHHHH
Q 048339 54 SDRIKNIVSILKRGPISPYISWHS---GIPAQIPQLLSF--HTPDYINELVEA 101 (386)
Q Consensus 54 p~R~~~i~~~L~~~~l~~~~~~~~---~~~as~e~l~~v--H~~~Yl~~l~~~ 101 (386)
..|...+++.|++.=..++.++.. .+..+..++... -++.+++.+...
T Consensus 11 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~ 63 (398)
T 3ez2_A 11 AQRANRMLNVLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSE 63 (398)
T ss_dssp HHHHHHHHHHHHHHHTTTC------CCCCCBCGGGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhccccccCCCcCHHHHHHHhCCCHHHHHHHHHH
Confidence 467777777776532222222211 134455555322 467777766543
No 63
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=20.33 E-value=60 Score=29.55 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.3
Q ss_pred CeEEEEEecccCCCCc
Q 048339 183 GKVVVIDIDVHYGNGT 198 (386)
Q Consensus 183 ~RV~IvD~DvHHGnGt 198 (386)
+||++||+|..+|+-+
T Consensus 34 ~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 34 AKVAVIDLDLRQRTSA 49 (286)
T ss_dssp CCEEEEECCTTTCHHH
T ss_pred CcEEEEECCCCCCCHH
Confidence 6999999999777644
No 64
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=20.19 E-value=2.2e+02 Score=27.76 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHhcCCCEEEEeecCCCCCCCCCCCCcC---------CHHHHHHHHHHHHHHHhhcCCCcEEEEe
Q 048339 265 VPAIQKFEPNMIVLVVGQDSSAFDPNGRQCL---------TMDGYREMGRIVRSLADRYSGGRLLIVQ 323 (386)
Q Consensus 265 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~l---------t~~gy~~~~~~l~~~a~~~~~g~vv~vl 323 (386)
....++++|++||| |.+..+.. ..+...++.+.|+.+|+++ +.+|+++-
T Consensus 303 ~~l~~~~~~~lIvI---------D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~-~v~vi~ls 360 (444)
T 2q6t_A 303 RRLVSQNQVGLIII---------DYLQLMSGPGSGKSGENRQQEIAAISRGLKALAREL-GIPIIALS 360 (444)
T ss_dssp HHHHHHSCCCEEEE---------ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHH-TSCEEEEE
T ss_pred HHHHHHcCCCEEEE---------cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEEEEe
Confidence 34556789999998 33322221 1234567888899999988 57887774
Done!