RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 048339
(386 letters)
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 190 bits (482), Expect = 2e-57
Identities = 99/398 (24%), Positives = 170/398 (42%), Gaps = 52/398 (13%)
Query: 19 VFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSG 78
+ +D ML H G HPE++ RI++I S L+ + G
Sbjct: 8 LIYDSVMLKHQCSCGDNSR------------HPEHAGRIQSIWSRLQERGLRSQCECLRG 55
Query: 79 IPAQIPQLLSFHTPDYINEL------------------------VEADKAGGKMVCDGTV 114
A + +L S H+ ++ V G + D
Sbjct: 56 RKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIW 115
Query: 115 LNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAV 174
S AA A G+ V K +A+VRPPGHHA + A G+CF N+ +A
Sbjct: 116 NELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIAC 175
Query: 175 QLALNSGCGK-VVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDEL 233
+ ++++D DVH+GNGT + FY+ VL ISLH + G P +G VDE+
Sbjct: 176 RQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHD--DGNFFPGSGAVDEV 233
Query: 234 GEGEGFGYNLNIPL----PNGTGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFD- 288
G G G G+N+N+ GD Y+ A +V+P ++F P+++++ G D++
Sbjct: 234 GAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHP 293
Query: 289 -PNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLP 347
P G ++ + M + + +LA GG +++ EGG+ +T A + +L
Sbjct: 294 APLGGYHVSAKCFGYMTQQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNR 349
Query: 348 LALLSDP-IAYYPEDEAFPVKVIESIKQYQNDVIPFLK 384
+ LS+ P A ++ +E++ + + ++
Sbjct: 350 VDPLSEEGWKQKPNLNA--IRSLEAVIRVHSKYWGCMQ 385
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 166 bits (420), Expect = 2e-48
Identities = 81/335 (24%), Positives = 149/335 (44%), Gaps = 24/335 (7%)
Query: 39 FDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWHSGIPAQIPQLLSFHTPDYINEL 98
+ P ++ + + + R + S+++ + + A + ++ +FHT Y+ L
Sbjct: 7 YSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHL 66
Query: 99 VEADKAGGKMVCDG--------TVLNPGSWGAALLAVGTTLSAMKHVLDGHGKIAYALVR 150
+ + G D G + A G T++A + ++DG K+A
Sbjct: 67 QKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINW-S 125
Query: 151 PPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLT 210
HHA+ A G+C+LN+A L + L +++ +D+D+H+G+G + F ++KV+T
Sbjct: 126 GGWHHAKKDEASGFCYLNDAVLGILR-LRRKFERILYVDLDLHHGDGVEDAFSFTSKVMT 184
Query: 211 ISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNGTGDRGYVHAMTELVVPAIQK 270
+SLH + P G V ++G G+G Y++N+P+ +G D Y ++ Q
Sbjct: 185 VSLHKFSPGF---FPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241
Query: 271 FEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYSGGRLLIVQEGGYHVT 330
F P +VL +G D+ A DP +T G + + + LI+ GGY++
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQ-----LATLILGGGGYNLA 296
Query: 331 YSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFP 365
+A C +L LS I P+ E F
Sbjct: 297 NTARCWTYLTGVILGKT---LSSEI---PDHEFFT 325
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 163 bits (412), Expect = 3e-47
Identities = 83/356 (23%), Positives = 144/356 (40%), Gaps = 30/356 (8%)
Query: 17 INVFWDDGMLNHDTGKGLFDTGFDPGFLEVLEKHPENSDRIKNIVSILKRGPISPYISWH 76
+ + + K HP R+ ++ +
Sbjct: 3 VKLIGTLDYGKYRYPKN----------------HPLKIPRVSLLLRFKDAMNLIDEKELI 46
Query: 77 SGIPAQIPQLLSFHTPDYINELVEA------DKAGGKMVCDGTVLNPGSWGAALLAVGTT 130
PA +LL FHT DYIN L+EA K + G NP S+ + T
Sbjct: 47 KSRPATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLAT 106
Query: 131 LSAMKHVLDGHGKIAYALVRPPGHHAQPTMADGYCFLNNAGLAVQLALNSGCGKVVVIDI 190
S ++ + + HHA + A+G+C++NN + ++ G +++ ID+
Sbjct: 107 GSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDL 166
Query: 191 DVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEGFGYNLNIPLPNG 250
D H+ +G E FY +++V +SLH + + G ++E+GEG+G GYNLNIPLP G
Sbjct: 167 DAHHCDGVQEAFYDTDQVFVLSLHQSP--EYAFPFEKGFLEEIGEGKGKGYNLNIPLPKG 224
Query: 251 TGDRGYVHAMTELVVPAIQKFEPNMIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSL 310
D ++ A+ + + + FEP + +L +G D D + L+ + + IVR +
Sbjct: 225 LNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREV 284
Query: 311 ADRYSGGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPL-ALLSDPIAYYPEDEAFP 365
G + + GGYH A + + L++ + F
Sbjct: 285 F-----GEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFE 335
>d1fvpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390)
{Photobacterium phosphoreum [TaxId: 659]}
Length = 231
Score = 27.0 bits (59), Expect = 3.9
Identities = 6/35 (17%), Positives = 8/35 (22%), Gaps = 6/35 (17%)
Query: 350 LLSDPIAYYPEDEAFPVKVIESIKQYQNDVIPFLK 384
LL + N VI F +
Sbjct: 198 LLCFESMQDQNK------KKSVMIDLNNQVIKFRQ 226
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 323
Score = 27.2 bits (60), Expect = 3.9
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 260 MTELVVPAIQKFEPN--MIVLVVGQDSSAFDPNGRQCLTMDGYREMGRIVRSLADRYS 315
+ LV + FEP + L + + + + GY + S
Sbjct: 259 LGPLVERVLACFEPAEFSVALHADVATKLLERI--CSVDVKGYSLAEWSPEEFGEGGS 314
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
progastricsin (pepsinogen C) [TaxId: 9606]}
Length = 372
Score = 26.9 bits (58), Expect = 4.2
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 179 NSGCGKVVVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQNGTVDELGEGEG 238
S + YG+G+ GF+ + + S+ + + +G S + GT + +G
Sbjct: 103 ESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDG 162
Query: 239 FGYN 242
Sbjct: 163 IMGL 166
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 25.0 bits (55), Expect = 5.3
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 289 PNGRQCLTMDGYREMGRIVRSLADRYSG 316
NGR + R + + +A + G
Sbjct: 18 ENGR--ILDYPARPLKTGLLEIAKIHKG 43
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId:
70863]}
Length = 173
Score = 25.5 bits (55), Expect = 9.9
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 76 HSGIPAQIPQLLSFHTPDYINELVEADKAGGKMVCDGTVLNPGSWGAALLAVGTTLSAMK 135
G + P I A G ++ V PG + + A+
Sbjct: 95 MPGFGELMRAESLKFVPTAILSRQTAGLRGDSLI----VNLPGKPKSIRECLDAVFPAIP 150
Query: 136 HVLD 139
+ +D
Sbjct: 151 YCID 154
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.428
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,559,285
Number of extensions: 76740
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 10
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)