BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048342
         (319 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q12519|YJ87_SCHPO Ucharacterized MFS-type transporter C330.07c OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPCC330.07c PE=1 SV=1
          Length = 500

 Score = 32.7 bits (73), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 2   VGLIAADTTALSYWFNWRFFLCAIWIL----FCFGMSSFFIWKEECFDNFKSNGGGTQQD 57
           +G I A  T  S    W  +  A W++    F + ++  F +KE   D  KS     Q++
Sbjct: 240 LGGILAKATIHSKNAVWNQYTVASWVMLFMWFFYMLTIIFFFKEVTAD--KSEKVSQQKE 297

Query: 58  TCNDDEWRPILKQVHPFWLLAFRVTAF 84
             NDDE RP L   H F L      AF
Sbjct: 298 --NDDEDRPKLSWKHKFLLFFLAEVAF 322


>sp|Q8QME6|CAPSD_CACV Probable capsid protein OS=Canary circovirus GN=Cap PE=3 SV=1
          Length = 250

 Score = 32.3 bits (72), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 178 QVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINA 222
           Q+ F T    ++L D + WG I   L  E+Y++ L  V M  +N 
Sbjct: 66  QLSFGTDGINIILDDFLDWGTINWRLPFEDYRIRLAKVEMRPLNE 110


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.144    0.505 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,399,318
Number of Sequences: 539616
Number of extensions: 4855565
Number of successful extensions: 14852
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 14851
Number of HSP's gapped (non-prelim): 7
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 61 (28.1 bits)