Query 048342
Match_columns 319
No_of_seqs 122 out of 141
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04750 Far-17a_AIG1: FAR-17a 99.6 5.9E-14 1.3E-18 126.1 13.5 156 98-295 30-195 (201)
2 KOG3989 Beta-2-glycoprotein I 98.5 2.1E-06 4.5E-11 79.5 13.6 142 98-280 37-188 (224)
3 COG1755 Uncharacterized protei 61.3 1.2E+02 0.0026 27.4 10.2 99 213-313 44-171 (172)
4 PF03248 Rer1: Rer1 family; I 31.6 2.5E+02 0.0055 25.4 7.7 42 64-107 13-54 (176)
5 KOG4740 Uncharacterized conser 25.7 5.4E+02 0.012 27.5 9.9 100 23-131 301-401 (564)
6 PF12841 YvrJ: YvrJ protein fa 22.6 34 0.00073 23.3 0.4 18 27-44 6-23 (38)
7 COG2917 Intracellular septatio 19.8 6.3E+02 0.014 23.0 7.9 94 16-126 74-169 (180)
8 PF03092 BT1: BT1 family; Int 19.7 3.2E+02 0.0068 27.4 6.8 38 97-134 234-277 (433)
9 PRK15033 tricarballylate utili 15.9 3.9E+02 0.0084 27.2 6.3 64 236-302 234-299 (389)
10 COG5264 VTC1 Vacuolar transpor 15.8 3.8E+02 0.0081 23.0 5.2 51 78-135 35-85 (126)
No 1
>PF04750 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: IPR006838 This entry includes the hamster androgen-induced FAR-17a protein (Q60534 from SWISSPROT) []. The function of these proteins is unknown but it is thought to have a central role in the fusion process during myogenesis, within the somatic mesoderm. This entry also includes homologous regions from a number of other metazoan proteins.; GO: 0016021 integral to membrane
Probab=99.55 E-value=5.9e-14 Score=126.13 Aligned_cols=156 Identities=23% Similarity=0.387 Sum_probs=113.3
Q ss_pred cCCEEEEEehhhhHHHHHHHHHHHHHHHHhhhhhhcccccCccccccCCcccccCccccCCCCCCchhhhhhhhhhHHH-
Q 048342 98 NGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYL- 176 (319)
Q Consensus 98 ~g~~~F~YyT~Wtf~LltiYF~las~~S~~g~~~y~~~~~~~~v~~~~~~d~e~~~~~~~~~~~~~~~kr~~ag~w~~~- 176 (319)
.-|+.|.|+|+|+..+.++||+++.+... ++ + ++ ....
T Consensus 30 ~~gg~~~fLT~~~~~~~~~~~~~~~~~d~-------~~--~----------------------------~~----l~~~~ 68 (201)
T PF04750_consen 30 SYGGRFKFLTNWSLVLQTIYFILALLCDL-------FS--S----------------------------RK----LRKLR 68 (201)
T ss_pred hhcCcceehhHHHHHHHHHHHHHHHHHHh-------cc--c----------------------------HH----HHHHH
Confidence 35678899999999999999988866554 10 0 00 0112
Q ss_pred HHHHHHHhhhhHhhhheeEEEEee--ccccccc-c---ccccccchhhhHHHHHHHHHHhhcCC--CCchhHHHHHHHHH
Q 048342 177 FQVLFQTIAGAVVLTDLVYWGVIF--PFLTLEE-Y---KLNLMTVNMHAINAFFLLGDTALNSM--QFPWFRISYFILWT 248 (319)
Q Consensus 177 ~qilfqt~a~a~~LtdiVyW~iL~--p~l~~~~-~---~lnf~~i~~H~lNavflL~D~~Ln~~--P~p~~h~~Y~vl~~ 248 (319)
-+.+++++...+++|+++||++.. |-+-.|+ . -...+|.++|++|++++++|..+.+. |.+..++......+
T Consensus 69 ~~~~~~~~~pl~~~V~~~yW~l~~~dp~lv~p~~~~~~ip~wln~~~H~~~~i~llid~~~~~~~~~~~~~~~~~~~~~~ 148 (201)
T PF04750_consen 69 DWLFYSLAFPLEFIVTVVYWSLYLIDPELVFPKWLDNVIPLWLNHSMHTLPLIFLLIDLFLFKHRYPSRKKALLISFAFG 148 (201)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHhCCHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 466788999999999999999642 2211121 1 12358999999999999999999885 55666888888899
Q ss_pred HHHHHHHHHHHhhccCccccccccCCCCCc-hhhHHHHHHHHHHHHHH
Q 048342 249 SIFVIFQWILHASVSIWWPYPFLELSSPFA-PLWYLLVGLAHFPCYCI 295 (319)
Q Consensus 249 ~~YviF~~I~ha~g~~~w~YpFLD~~~p~a-pl~y~~v~~~hi~~y~~ 295 (319)
.+|.+.....+...| .|||||||..++.. .+.+.+..++...+|.+
T Consensus 149 ~~Y~~~~~~~~~~~g-~wpYPfl~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (201)
T PF04750_consen 149 LAYIIWIEYIYYVNG-FWPYPFLDVLSPPGRVVFFAVSFLLAFLLYLL 195 (201)
T ss_pred HHHHhheeEEEeCCC-eeCCCCcCCCCcchhheehHHHHHHHHHHHHH
Confidence 999988777777756 89999999877654 55566666666555544
No 2
>KOG3989 consensus Beta-2-glycoprotein I [Extracellular structures]
Probab=98.52 E-value=2.1e-06 Score=79.48 Aligned_cols=142 Identities=18% Similarity=0.333 Sum_probs=101.7
Q ss_pred cCCEEEEEehhhhHHHHHHHHHHHHHHHHhhhhhhcccccCccccccCCcccccCccccCCCCCCchhhhhhhhhhHHHH
Q 048342 98 NGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYLF 177 (319)
Q Consensus 98 ~g~~~F~YyT~Wtf~LltiYF~las~~S~~g~~~y~~~~~~~~v~~~~~~d~e~~~~~~~~~~~~~~~kr~~ag~w~~~~ 177 (319)
..|+.|.|.|--...+-.+|..++.+.-..| ++++ + + + .+-
T Consensus 37 ~~gg~f~ylT~i~l~lq~i~~~v~~~~dv~g---~~~~--~--~-------------------------~-------~i~ 77 (224)
T KOG3989|consen 37 LNGGKFKYLTFIDLILQIIYYVVGLLNDVVG---RNSL--T--L-------------------------H-------IIR 77 (224)
T ss_pred hcCCceehHHHHHHHHHHHHHHHHHHHHHhc---cCcc--c--h-------------------------h-------hhH
Confidence 4788999999999999999999886555433 1110 0 0 0 011
Q ss_pred -HHHHHHhhhhHhhhheeEEEE-------eeccccccccccccccchhhhHHHHHHHHHHhhcCC--CCchhHHHHHHHH
Q 048342 178 -QVLFQTIAGAVVLTDLVYWGV-------IFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSM--QFPWFRISYFILW 247 (319)
Q Consensus 178 -qilfqt~a~a~~LtdiVyW~i-------L~p~l~~~~~~lnf~~i~~H~lNavflL~D~~Ln~~--P~p~~h~~Y~vl~ 247 (319)
+..+..+...++.|+++||++ ++|...+.. ..+.+|-.+|....+|+++|...... |.+.-+..-....
T Consensus 78 D~l~~tlafPv~~~V~~~FW~Ly~~d~~Li~p~~l~~~-~p~wlnh~~Ht~~i~~~lld~~~~~~~~p~r~~~l~~~~~f 156 (224)
T KOG3989|consen 78 DYLAATLAFPVEVIVTVLFWGLYLYDRELLMPKVLDMV-IPSWLNHGLHTYPIPFILLDLYISGHTYPSRSAGLTGIASF 156 (224)
T ss_pred HHHHHHHhchHHHhhhhhhhhheeecHHHcCchhhhhc-CchhhhhHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHH
Confidence 223456778889999999986 333322222 33678999999999999999999885 8888777778888
Q ss_pred HHHHHHHHHHHHhhccCccccccccCCCCCchh
Q 048342 248 TSIFVIFQWILHASVSIWWPYPFLELSSPFAPL 280 (319)
Q Consensus 248 ~~~YviF~~I~ha~g~~~w~YpFLD~~~p~apl 280 (319)
..+|.+.-...+..+| .|+|||||.-.+..-.
T Consensus 157 ~~~Y~~~i~~v~~~~~-~WvYP~L~~~~~~~ri 188 (224)
T KOG3989|consen 157 VTLYFIWIHYVYFYNG-FWVYPFLGVLAPYKRI 188 (224)
T ss_pred HHHHHHHHHHhhccCC-EEeeccchhccchhHH
Confidence 8888876665555545 7999999977765433
No 3
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.31 E-value=1.2e+02 Score=27.36 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=72.2
Q ss_pred ccchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHhhccC---------------ccccccccCCCCC
Q 048342 213 MTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSI---------------WWPYPFLELSSPF 277 (319)
Q Consensus 213 ~~i~~H~lNavflL~D~~Ln~~P~p~~h~~Y~vl~~~~YviF~~I~ha~g~~---------------~w~YpFLD~~~p~ 277 (319)
.-.-+|.+=-+.+++|..+|...++|..+.=+.+....+..--|++|..|.. .+||...- .|.
T Consensus 44 ~l~ilH~~~yls~ivE~~~~~~~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~k--HPN 121 (172)
T COG1755 44 LLVILHTAFYLSCIVEAWLNNTFFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMK--HPN 121 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhcc--CCc
Confidence 3457899999999999999999999999988999999999999999999863 46777643 222
Q ss_pred -----------chhhHHH--HHHHHHHHHHHHHH-HHHHHHhhhhhhccc
Q 048342 278 -----------APLWYLL--VGLAHFPCYCIFAL-VMKLKHFLLSKWFAH 313 (319)
Q Consensus 278 -----------apl~y~~--v~~~hi~~y~~~~l-i~klK~~~l~~~fp~ 313 (319)
.|+-+=+ -+++..|+|.++.. -+|--++.+...++.
T Consensus 122 YflnIipEligl~Ll~~A~~Ta~l~~p~ya~~L~vRIr~EekaL~~~~~~ 171 (172)
T COG1755 122 YFLNIIPELIGLPLLCQAWYTALLFSPIYALLLYVRIRQEEKALAELFIK 171 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC
Confidence 1111111 15566777776655 566667777776654
No 4
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=31.64 E-value=2.5e+02 Score=25.39 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=29.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeh
Q 048342 64 WRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYT 107 (319)
Q Consensus 64 W~~c~~~ihP~wlL~yR~~~f~~~~~~li~~~~~~g~~~F~YyT 107 (319)
+..|+...-|- ...||+.++.++.+.+..+...+|..-+.|+
T Consensus 13 yQ~~LDk~tp~--~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~ 54 (176)
T PF03248_consen 13 YQSYLDKSTPY--TKYRWIAFLVLLFLFLLRVYYLQGWYIVTYA 54 (176)
T ss_pred HHHHHHhcccC--cHHHHHHHHHHHHHHHHHHHHhcceeeehHH
Confidence 33444443333 5789999999999988888877766666664
No 5
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.66 E-value=5.4e+02 Score=27.47 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccCCcCccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcCCEE
Q 048342 23 CAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTI 102 (319)
Q Consensus 23 c~~~v~~~~~~a~~~i~k~e~~~~~~~~~~~~~~~~~~~~~W~~c~~~ihP~wlL~yR~~~f~~~~~~li~~~~~~g~~~ 102 (319)
|.+.--+--++..+.+||++|....+.+.++.++..+-| |- +-+-+-+++.=.++..+. ++.+..+..+.++.
T Consensus 301 ciVEySLI~Aai~fiiWk~i~~~~~~~~~~kkK~~~R~D-----Cs-~t~~GlF~Gi~~li~s~I-si~~~~il~~~~~~ 373 (564)
T KOG4740|consen 301 CIVEYSLIAAAILFIIWKNIGRNPGESSKDKKKHHIRFD-----CS-GTSVGLFLGIALLIGSFI-SIALFNILCSEDNP 373 (564)
T ss_pred HHHHHHHHHHHHHhheeeeccCCcccccchhhcCcccee-----cC-CcchHHHHHHHHHHHHHH-HHHHHHHHHcCCCc
Confidence 444444444445588999999865433223333332212 21 222232332222221111 12222333333332
Q ss_pred EEEehhhhHHHH-HHHHHHHHHHHHhhhhh
Q 048342 103 FFYYTQWTFTLL-TIYFGFGSLLSIYGCHR 131 (319)
Q Consensus 103 F~YyT~Wtf~Ll-tiYF~las~~S~~g~~~ 131 (319)
=++++.+.-. .++|..+.+..+.|.+|
T Consensus 374 --~~A~~v~~~~~l~~f~~a~la~l~~f~~ 401 (564)
T KOG4740|consen 374 --RAADYVVGITDLLLFVVALLACLFAFIR 401 (564)
T ss_pred --hhhHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777666 67777777777766655
No 6
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=22.57 E-value=34 Score=23.31 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhcccc
Q 048342 27 ILFCFGMSSFFIWKEECF 44 (319)
Q Consensus 27 v~~~~~~a~~~i~k~e~~ 44 (319)
++.|+++|++|+-|-|+.
T Consensus 6 ~GFPi~va~yLL~R~E~k 23 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKK 23 (38)
T ss_pred cCcHHHHHHHHHHHHHHH
Confidence 578999999999999964
No 7
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=19.79 E-value=6.3e+02 Score=22.98 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCccc-cCCcCccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 048342 16 FNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDT-CNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVK 94 (319)
Q Consensus 16 l~w~~~~c~~~v~~~~~~a~~~i~k~e~~~~~~~~~~~~~~~~-~~~~~W~~c~~~ihP~wlL~yR~~~f~~~~~~li~~ 94 (319)
+-|..-+--..-++...+|.++..|.=-.+--+ +|. =.|+.||. |-+|+..|+.+++++=.-
T Consensus 74 IKwK~TIi~~lFa~~Llgs~~~~~k~lik~~lg-------~~l~Lp~~~W~~----------Ln~~W~~FFlf~ai~N~y 136 (180)
T COG2917 74 IKWKPTIIYWLFALVLLGSQFLFKKPLIKRMLG-------KELQLPEEVWRK----------LNLRWALFFLFCAIANEY 136 (180)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhcCcHHHHHHH-------hhhCCCHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666654421111111 122 45667877 999999876665543322
Q ss_pred hh-hcCCEEEEEehhhhHHHHHHHHHHHHHHHH
Q 048342 95 VL-INGGTIFFYYTQWTFTLLTIYFGFGSLLSI 126 (319)
Q Consensus 95 ~~-~~g~~~F~YyT~Wtf~LltiYF~las~~S~ 126 (319)
+. .-..+...=|--|+.+.+|+-|.+.+-.=+
T Consensus 137 V~~~fs~d~WV~FKvfG~~~ltlvf~l~q~~~i 169 (180)
T COG2917 137 VARNFSTDTWVNFKVFGLTPLTLIFTLIQGPYI 169 (180)
T ss_pred HHHhCCCCeEEEeehhhhhHHHHHHHHHHHHHH
Confidence 22 334567777888999999998876654433
No 8
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=19.74 E-value=3.2e+02 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=24.1
Q ss_pred hcCCEEEEEehhhh------HHHHHHHHHHHHHHHHhhhhhhcc
Q 048342 97 INGGTIFFYYTQWT------FTLLTIYFGFGSLLSIYGCHRCHK 134 (319)
Q Consensus 97 ~~g~~~F~YyT~Wt------f~LltiYF~las~~S~~g~~~y~~ 134 (319)
.+++..|+|+|+.- ..-....-.+|++.++.|+..|++
T Consensus 234 ~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~ 277 (433)
T PF03092_consen 234 ISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRK 277 (433)
T ss_pred CCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888888643 333334446787888888776654
No 9
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=15.91 E-value=3.9e+02 Score=27.21 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHHHHHHHHHH--HHHhhccCccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 048342 236 FPWFRISYFILWTSIFVIFQW--ILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKL 302 (319)
Q Consensus 236 ~p~~h~~Y~vl~~~~YviF~~--I~ha~g~~~w~YpFLD~~~p~apl~y~~v~~~hi~~y~~~~li~kl 302 (319)
=+.+|..-+--+.+.++...+ +||..-+..-|||..+ +..-++.++.+.+.+-.++++++..|+
T Consensus 234 Rr~~H~l~~yGFil~f~aT~va~~yh~~~~~~aPyp~~s---~~klLg~vGgi~LliG~~gl~~~~~R~ 299 (389)
T PRK15033 234 RRRFHHLTFYGFMLCFAATVVATLYHYVLGWHAPYPFFS---LPVLLGTLGGIGLLIGPAGLLWLNLRR 299 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345665555455555555444 4776545467888643 333567777666666566655554443
No 10
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=15.76 E-value=3.8e+02 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCEEEEEehhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 048342 78 AFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKI 135 (319)
Q Consensus 78 ~yR~~~f~~~~~~li~~~~~~g~~~F~YyT~Wtf~LltiYF~las~~S~~g~~~y~~~ 135 (319)
..||+.+..+++.+...+...++ +-+-.+-.+||+++-....|..+.|++|
T Consensus 35 fl~wl~~~vllg~l~~~l~n~~~-------~~g~~~a~vftivaif~~~ya~~lY~kR 85 (126)
T COG5264 35 FLSWLSVTVLLGGLGFALYNSGD-------RLGMISAYVFTIVAIFCGFYALMLYLKR 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999998888877665443 5556666777777777777777778876
Done!