Query 048342
Match_columns 319
No_of_seqs 122 out of 141
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 23.9 1.7E+02 0.0058 20.4 5.3 41 3-46 1-41 (54)
2 3mk7_C Cytochrome C oxidase, C 18.7 4.8E+02 0.016 23.5 8.9 25 18-43 5-29 (311)
3 3rko_J NADH-quinone oxidoreduc 14.8 1.2E+02 0.0042 26.2 3.5 27 13-41 136-162 (184)
4 2knc_A Integrin alpha-IIB; tra 14.1 2.6E+02 0.0089 19.5 4.4 29 21-49 19-47 (54)
5 2l2t_A Receptor tyrosine-prote 10.1 2.8E+02 0.0097 18.5 3.4 15 28-42 23-37 (44)
6 2ks1_B Epidermal growth factor 9.7 3E+02 0.01 18.3 3.4 16 26-41 22-37 (44)
7 2l8s_A Integrin alpha-1; trans 7.7 5.4E+02 0.018 17.9 4.2 29 18-46 10-38 (54)
8 1pw4_A Glycerol-3-phosphate tr 5.3 1.2E+03 0.04 20.5 6.4 21 18-38 185-207 (451)
9 2l9u_A Receptor tyrosine-prote 4.5 6.1E+02 0.021 16.2 2.6 21 22-42 13-33 (40)
10 1jb0_X Photosystem I subunit P 4.4 5.6E+02 0.019 16.2 2.4 18 105-122 11-28 (35)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.93 E-value=1.7e+02 Score=20.44 Aligned_cols=41 Identities=17% Similarity=0.485 Sum_probs=19.8
Q ss_pred cccccCCCCcccccchhhHHHHHHHHHHHHHHHHhhhhcccccc
Q 048342 3 GLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDN 46 (319)
Q Consensus 3 ~~~~~~~~~~~ywl~w~~~~c~~~v~~~~~~a~~~i~k~e~~~~ 46 (319)
|.|..+......|. ..+.++--++..++-.+++||--=+++
T Consensus 1 ~~~~~~~~~vp~wi---Ii~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 1 GAMGSEERAIPIWW---VLVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp CCTTCTTTTCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCCcchHH---HHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 45555555455443 343333333333444566777544443
No 2
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=18.75 E-value=4.8e+02 Score=23.49 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccc
Q 048342 18 WRFFLCAIWILFCFGMSSFFIWKEEC 43 (319)
Q Consensus 18 w~~~~c~~~v~~~~~~a~~~i~k~e~ 43 (319)
|-.++. ++++.++++-.+||+.+.+
T Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 29 (311)
T 3mk7_C 5 WSGYIA-LLTLGTIVALFWLIFATRK 29 (311)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 333443 3455666666777777543
No 3
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=14.82 E-value=1.2e+02 Score=26.17 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=20.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhhc
Q 048342 13 SYWFNWRFFLCAIWILFCFGMSSFFIWKE 41 (319)
Q Consensus 13 ~ywl~w~~~~c~~~v~~~~~~a~~~i~k~ 41 (319)
+|++ +|=+..+..+++|++|..+-+|.
T Consensus 136 ~Y~l--pFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 136 PYVL--AVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp TSHH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 4554 57788888899999988876553
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.12 E-value=2.6e+02 Score=19.46 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccC
Q 048342 21 FLCAIWILFCFGMSSFFIWKEECFDNFKS 49 (319)
Q Consensus 21 ~~c~~~v~~~~~~a~~~i~k~e~~~~~~~ 49 (319)
.++++.+++.++.++|-.=-..|.+++..
T Consensus 19 vl~GLllL~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCCCcc
Confidence 46778888888888876644445455444
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.07 E-value=2.8e+02 Score=18.46 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhcc
Q 048342 28 LFCFGMSSFFIWKEE 42 (319)
Q Consensus 28 ~~~~~~a~~~i~k~e 42 (319)
++.++++.++.+|+.
T Consensus 23 v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhh
Confidence 334445556666643
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.69 E-value=3e+02 Score=18.30 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhhc
Q 048342 26 WILFCFGMSSFFIWKE 41 (319)
Q Consensus 26 ~v~~~~~~a~~~i~k~ 41 (319)
.+++.++++.++.+|+
T Consensus 22 ~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3334445555666664
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.73 E-value=5.4e+02 Score=17.88 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccccc
Q 048342 18 WRFFLCAIWILFCFGMSSFFIWKEECFDN 46 (319)
Q Consensus 18 w~~~~c~~~v~~~~~~a~~~i~k~e~~~~ 46 (319)
|...+.++--++..++-.+++||--=+++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 44444444333444444567787655554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=5.34 E-value=1.2e+03 Score=20.52 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=9.7
Q ss_pred hh--hHHHHHHHHHHHHHHHHhh
Q 048342 18 WR--FFLCAIWILFCFGMSSFFI 38 (319)
Q Consensus 18 w~--~~~c~~~v~~~~~~a~~~i 38 (319)
|| +.++++..++..++..+.+
T Consensus 185 w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 185 WHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55 4555544444444443333
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.45 E-value=6.1e+02 Score=16.20 Aligned_cols=21 Identities=14% Similarity=0.578 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 048342 22 LCAIWILFCFGMSSFFIWKEE 42 (319)
Q Consensus 22 ~c~~~v~~~~~~a~~~i~k~e 42 (319)
+..+-|...|.++-+|-||-.
T Consensus 13 i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 13 IAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEEEccc
Confidence 445566677778889999843
No 10
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=4.44 E-value=5.6e+02 Score=16.22 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=13.8
Q ss_pred EehhhhHHHHHHHHHHHH
Q 048342 105 YYTQWTFTLLTIYFGFGS 122 (319)
Q Consensus 105 YyT~Wtf~LltiYF~las 122 (319)
|=|-|...++.|=|++|+
T Consensus 11 frt~WalllLaINflVAa 28 (35)
T 1jb0_X 11 FRTFWAVLLLAINFLVAA 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788888888887774
Done!