Query 048342
Match_columns 319
No_of_seqs 122 out of 141
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 14:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 15.2 70 0.0051 22.5 3.8 28 16-43 3-31 (103)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 9.9 25 0.0018 24.9 -0.3 25 21-45 23-47 (91)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.0 1.7E+02 0.012 18.8 3.4 30 16-45 3-33 (57)
4 d1jb0x_ f.23.20.1 (X:) Subunit 6.9 1.6E+02 0.012 16.2 2.4 18 105-122 5-22 (29)
5 d1ydxa2 d.287.1.2 (A:194-374) 4.6 1.4E+02 0.011 21.6 1.7 19 295-313 161-179 (181)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 4.5 4E+02 0.029 18.1 4.1 32 14-45 26-58 (100)
7 d1oeda_ f.36.1.1 (A:) Acetylch 4.0 2.7E+02 0.019 21.5 3.0 28 16-43 64-91 (227)
8 d1oedb_ f.36.1.1 (B:) Acetylch 3.3 3.5E+02 0.026 20.8 3.1 30 15-44 63-92 (250)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.0 7.4E+02 0.054 16.8 4.7 36 20-55 39-74 (107)
10 d1ex4a1 b.34.7.1 (A:223-270) D 3.0 99 0.0072 19.5 -0.6 16 37-52 19-34 (48)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.20 E-value=70 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHH-HHHHHHhhhhccc
Q 048342 16 FNWRFFLCAIWILFC-FGMSSFFIWKEEC 43 (319)
Q Consensus 16 l~w~~~~c~~~v~~~-~~~a~~~i~k~e~ 43 (319)
|+||.+..+.++++. ++.++.+++--|+
T Consensus 3 l~~r~~~~~~~~~~~~~~~~s~~~~~~e~ 31 (103)
T d1r3jc_ 3 LHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999877776655 4555577777664
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.95 E-value=25 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc
Q 048342 21 FLCAIWILFCFGMSSFFIWKEECFD 45 (319)
Q Consensus 21 ~~c~~~v~~~~~~a~~~i~k~e~~~ 45 (319)
.++++....-..+-.+.+|||.+++
T Consensus 23 ~i~~iv~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 23 GLMLIVVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHTTTTTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHHHHHHhhheeeeccC
Confidence 3455555555566678889987544
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.00 E-value=1.7e+02 Score=18.76 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=20.0
Q ss_pred cchhhHHHHHHHH-HHHHHHHHhhhhccccc
Q 048342 16 FNWRFFLCAIWIL-FCFGMSSFFIWKEECFD 45 (319)
Q Consensus 16 l~w~~~~c~~~v~-~~~~~a~~~i~k~e~~~ 45 (319)
++||-+.++..+. +.+++++.++.--|+..
T Consensus 3 ~~~R~~~~~~~~~~i~i~~~s~~~y~~E~~~ 33 (57)
T d2h8pc1 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5789887776554 44555677777777543
No 4
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=6.92 E-value=1.6e+02 Score=16.25 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=14.2
Q ss_pred EehhhhHHHHHHHHHHHH
Q 048342 105 YYTQWTFTLLTIYFGFGS 122 (319)
Q Consensus 105 YyT~Wtf~LltiYF~las 122 (319)
|=|-|...|+.|-|+.++
T Consensus 5 frt~wa~lllainflvaa 22 (29)
T d1jb0x_ 5 FRTFWAVLLLAINFLVAA 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 447799999999887774
No 5
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.58 E-value=1.4e+02 Score=21.63 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhccc
Q 048342 295 IFALVMKLKHFLLSKWFAH 313 (319)
Q Consensus 295 ~~~li~klK~~~l~~~fp~ 313 (319)
...-+-.+|+.+++++||+
T Consensus 161 ~i~~l~~lk~~Ll~~lF~~ 179 (181)
T d1ydxa2 161 ELSSLTVIRDTLLKKLFPD 179 (181)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444778999999999996
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.50 E-value=4e+02 Score=18.12 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=16.6
Q ss_pred cccchhhHH-HHHHHHHHHHHHHHhhhhccccc
Q 048342 14 YWFNWRFFL-CAIWILFCFGMSSFFIWKEECFD 45 (319)
Q Consensus 14 ywl~w~~~~-c~~~v~~~~~~a~~~i~k~e~~~ 45 (319)
++|+...+. |.++...-+.+-.+.++||.+++
T Consensus 26 ~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 26 HWLDGFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 455555444 44444444444456677766443
No 7
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.98 E-value=2.7e+02 Score=21.48 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhccc
Q 048342 16 FNWRFFLCAIWILFCFGMSSFFIWKEEC 43 (319)
Q Consensus 16 l~w~~~~c~~~v~~~~~~a~~~i~k~e~ 43 (319)
+-..+..|.+.+.++++.+++++.-+.+
T Consensus 64 i~~y~~~~~~~v~~sli~tiiV~~l~~~ 91 (227)
T d1oeda_ 64 IGKYMLFTMIFVISSIIITVVVINTHHR 91 (227)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhheecc
Confidence 5677999999999999999999876554
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.25 E-value=3.5e+02 Score=20.85 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhcccc
Q 048342 15 WFNWRFFLCAIWILFCFGMSSFFIWKEECF 44 (319)
Q Consensus 15 wl~w~~~~c~~~v~~~~~~a~~~i~k~e~~ 44 (319)
.+-..+.+|.+.+.++++.+++++.-+.+.
T Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 92 (250)
T d1oedb_ 63 IIIRYLMFIMILVAFSVILSVVVLNLHHRS 92 (250)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 366789999999999999999998776654
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.03 E-value=7.4e+02 Score=16.82 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCC
Q 048342 20 FFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQ 55 (319)
Q Consensus 20 ~~~c~~~v~~~~~~a~~~i~k~e~~~~~~~~~~~~~ 55 (319)
..+|.++..+-+.+-.+.++|+.+++.+..+.-.+.
T Consensus 39 ~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n 74 (107)
T d3ehbb2 39 LYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHN 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCccccccccc
No 10
>d1ex4a1 b.34.7.1 (A:223-270) DNA-binding domain of retroviral integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.03 E-value=99 Score=19.48 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=0.0
Q ss_pred hhhhccccccccCCCC
Q 048342 37 FIWKEECFDNFKSNGG 52 (319)
Q Consensus 37 ~i~k~e~~~~~~~~~~ 52 (319)
|+||-||+-.-+.+++
T Consensus 19 LlWKGeGAVVi~~~~~ 34 (48)
T d1ex4a1 19 LLWKGEGAVVIQDNSD 34 (48)
T ss_dssp EEEECSSEEEEECSSC
T ss_pred eEEcccceEEEecCCE
Done!