Query 048343
Match_columns 347
No_of_seqs 193 out of 1180
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2603 Oligosaccharyltransfer 100.0 3.8E-70 8.3E-75 506.1 26.9 309 26-347 19-331 (331)
2 PF04756 OST3_OST6: OST3 / OST 100.0 1E-33 2.2E-38 247.6 -0.4 142 169-314 1-145 (160)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.7 2.4E-17 5.1E-22 136.1 10.5 105 45-174 8-113 (113)
4 cd02996 PDI_a_ERp44 PDIa famil 99.7 6.4E-17 1.4E-21 131.6 11.5 107 47-174 2-108 (108)
5 cd03007 PDI_a_ERp29_N PDIa fam 99.7 7.8E-17 1.7E-21 133.2 10.5 108 46-178 1-116 (116)
6 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 9.4E-17 2E-21 129.4 10.6 102 47-174 2-104 (104)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 1.5E-16 3.3E-21 127.7 11.5 100 46-173 1-100 (101)
8 PF00085 Thioredoxin: Thioredo 99.7 3E-16 6.6E-21 124.9 11.4 103 48-177 1-103 (103)
9 PTZ00443 Thioredoxin domain-co 99.7 1.4E-15 3E-20 139.7 17.2 114 45-181 29-142 (224)
10 cd03065 PDI_b_Calsequestrin_N 99.7 3E-16 6.5E-21 130.8 10.5 109 44-177 7-118 (120)
11 cd02994 PDI_a_TMX PDIa family, 99.7 7.3E-16 1.6E-20 123.5 11.0 100 47-176 2-101 (101)
12 cd03002 PDI_a_MPD1_like PDI fa 99.6 1.5E-15 3.2E-20 123.1 11.2 106 47-174 1-108 (109)
13 cd03001 PDI_a_P5 PDIa family, 99.6 2.5E-15 5.5E-20 120.2 11.3 101 48-174 2-102 (103)
14 COG3118 Thioredoxin domain-con 99.6 9.9E-16 2.1E-20 143.4 10.1 110 46-180 23-132 (304)
15 cd03005 PDI_a_ERp46 PDIa famil 99.6 2.3E-15 5E-20 120.2 10.2 102 47-174 1-102 (102)
16 PRK09381 trxA thioredoxin; Pro 99.6 5.5E-15 1.2E-19 120.2 11.2 107 45-178 2-108 (109)
17 KOG0910 Thioredoxin-like prote 99.6 3.5E-15 7.5E-20 127.2 9.7 106 47-179 44-149 (150)
18 cd02993 PDI_a_APS_reductase PD 99.6 6.2E-15 1.4E-19 120.4 10.8 105 47-174 2-109 (109)
19 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.5E-14 3.2E-19 115.6 10.8 104 47-174 1-105 (105)
20 KOG0190 Protein disulfide isom 99.6 7E-15 1.5E-19 147.2 10.0 114 44-182 23-136 (493)
21 TIGR01126 pdi_dom protein disu 99.6 2.1E-14 4.6E-19 114.2 10.8 102 51-178 1-102 (102)
22 PTZ00102 disulphide isomerase; 99.6 7E-14 1.5E-18 141.3 15.6 111 46-182 32-142 (477)
23 PRK10996 thioredoxin 2; Provis 99.5 6.1E-14 1.3E-18 119.8 11.7 104 47-178 36-139 (139)
24 cd02961 PDI_a_family Protein D 99.5 4.3E-14 9.4E-19 111.0 9.7 101 49-174 1-101 (101)
25 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 7E-14 1.5E-18 111.7 10.8 104 47-174 1-104 (104)
26 cd02997 PDI_a_PDIR PDIa family 99.5 6.6E-14 1.4E-18 112.0 10.1 101 48-174 2-104 (104)
27 cd02962 TMX2 TMX2 family; comp 99.5 9.2E-14 2E-18 120.5 11.6 86 45-147 27-118 (152)
28 cd02965 HyaE HyaE family; HyaE 99.5 6.6E-14 1.4E-18 114.7 9.5 85 45-147 9-93 (111)
29 cd02954 DIM1 Dim1 family; Dim1 99.5 6.1E-14 1.3E-18 115.6 8.8 77 53-147 2-78 (114)
30 cd02999 PDI_a_ERp44_like PDIa 99.5 8.7E-14 1.9E-18 112.2 8.8 92 55-174 8-100 (100)
31 cd02956 ybbN ybbN protein fami 99.5 1.5E-13 3.2E-18 108.9 9.6 95 54-174 1-95 (96)
32 cd02963 TRX_DnaJ TRX domain, D 99.5 1.2E-13 2.6E-18 113.3 9.2 103 50-176 8-110 (111)
33 cd02992 PDI_a_QSOX PDIa family 99.5 5.4E-13 1.2E-17 110.1 11.9 87 46-148 1-89 (114)
34 PLN02309 5'-adenylylsulfate re 99.5 2.5E-13 5.5E-18 136.4 11.8 110 45-177 344-456 (457)
35 TIGR00424 APS_reduc 5'-adenyly 99.5 3.5E-13 7.5E-18 135.5 12.3 109 45-176 350-461 (463)
36 cd02957 Phd_like Phosducin (Ph 99.4 4.3E-13 9.4E-18 110.2 8.9 83 46-147 4-86 (113)
37 TIGR01130 ER_PDI_fam protein d 99.4 8.5E-13 1.9E-17 132.2 11.3 113 46-182 1-113 (462)
38 cd02987 Phd_like_Phd Phosducin 99.4 1.7E-12 3.7E-17 115.2 11.4 124 32-176 46-173 (175)
39 TIGR01068 thioredoxin thioredo 99.4 1.9E-12 4.2E-17 102.3 10.4 100 51-177 1-100 (101)
40 PHA02278 thioredoxin-like prot 99.4 1.3E-12 2.9E-17 106.0 9.3 93 53-173 4-100 (103)
41 cd03000 PDI_a_TMX3 PDIa family 99.4 2.6E-12 5.7E-17 103.7 10.5 101 49-177 3-103 (104)
42 cd02985 TRX_CDSP32 TRX family, 99.4 2.2E-12 4.7E-17 104.4 9.4 96 52-175 2-100 (103)
43 cd02948 TRX_NDPK TRX domain, T 99.4 3.5E-12 7.6E-17 102.9 10.3 97 51-176 5-101 (102)
44 cd02989 Phd_like_TxnDC9 Phosdu 99.4 3.4E-12 7.4E-17 105.2 9.4 105 47-174 5-112 (113)
45 PLN00410 U5 snRNP protein, DIM 99.3 5.9E-12 1.3E-16 107.7 10.3 114 53-193 11-138 (142)
46 KOG0907 Thioredoxin [Posttrans 99.3 5.4E-12 1.2E-16 103.0 9.0 84 68-176 21-104 (106)
47 cd02988 Phd_like_VIAF Phosduci 99.3 1.3E-11 2.8E-16 111.1 11.0 122 32-176 67-190 (192)
48 cd02953 DsbDgamma DsbD gamma f 99.3 1.1E-11 2.3E-16 100.0 9.3 95 54-174 2-103 (104)
49 PTZ00102 disulphide isomerase; 99.3 1.1E-11 2.4E-16 125.3 11.7 111 46-180 357-467 (477)
50 KOG0908 Thioredoxin-like prote 99.3 9.8E-12 2.1E-16 113.5 9.2 107 47-181 2-109 (288)
51 cd02986 DLP Dim1 family, Dim1- 99.3 1.1E-11 2.5E-16 101.7 8.0 76 54-147 3-78 (114)
52 KOG0190 Protein disulfide isom 99.3 1.3E-11 2.8E-16 123.9 9.5 109 46-179 366-474 (493)
53 cd02984 TRX_PICOT TRX domain, 99.2 4.3E-11 9.3E-16 94.7 9.0 96 52-174 1-96 (97)
54 cd02975 PfPDO_like_N Pyrococcu 99.2 7.4E-11 1.6E-15 97.2 8.9 90 68-179 22-111 (113)
55 cd02950 TxlA TRX-like protein 99.2 1.6E-10 3.4E-15 99.1 10.7 99 54-179 11-111 (142)
56 cd02982 PDI_b'_family Protein 99.2 1.7E-10 3.6E-15 92.3 9.0 89 68-177 12-102 (103)
57 cd02949 TRX_NTR TRX domain, no 99.2 1.3E-10 2.9E-15 92.6 8.2 85 68-175 13-97 (97)
58 TIGR01130 ER_PDI_fam protein d 99.1 2.6E-10 5.6E-15 114.3 11.7 113 46-182 346-458 (462)
59 KOG0912 Thiol-disulfide isomer 99.1 1.9E-10 4.1E-15 107.8 8.2 110 51-182 1-110 (375)
60 KOG4277 Uncharacterized conser 99.1 1.5E-10 3.2E-15 108.3 7.4 113 46-190 28-140 (468)
61 cd02947 TRX_family TRX family; 99.1 4.7E-10 1E-14 86.0 8.9 92 54-174 1-92 (93)
62 cd02952 TRP14_like Human TRX-r 99.1 3.2E-10 6.8E-15 94.4 8.1 82 52-147 8-100 (119)
63 PTZ00051 thioredoxin; Provisio 99.1 3.5E-10 7.6E-15 89.7 7.8 79 48-147 2-81 (98)
64 TIGR01295 PedC_BrcD bacterioci 99.1 6E-10 1.3E-14 93.2 9.6 100 46-175 6-121 (122)
65 TIGR00411 redox_disulf_1 small 99.1 8.3E-10 1.8E-14 84.5 8.6 79 72-177 3-81 (82)
66 KOG1731 FAD-dependent sulfhydr 99.0 2.3E-10 5E-15 115.1 5.7 88 45-148 38-127 (606)
67 TIGR02187 GlrX_arch Glutaredox 99.0 9.4E-10 2E-14 100.5 6.3 110 48-181 5-114 (215)
68 cd02951 SoxW SoxW family; SoxW 98.9 3.3E-09 7.3E-14 88.2 8.5 90 69-179 15-120 (125)
69 KOG0191 Thioredoxin/protein di 98.9 7.1E-09 1.5E-13 102.7 9.9 110 46-182 29-138 (383)
70 KOG0191 Thioredoxin/protein di 98.9 7.8E-09 1.7E-13 102.4 10.2 112 46-181 143-255 (383)
71 PRK14018 trifunctional thiored 98.8 2.7E-08 5.9E-13 101.6 11.5 139 8-175 4-170 (521)
72 TIGR02187 GlrX_arch Glutaredox 98.8 4.8E-08 1E-12 89.3 11.7 97 49-176 118-214 (215)
73 PRK11509 hydrogenase-1 operon 98.8 5.3E-08 1.1E-12 82.3 10.4 110 47-181 18-127 (132)
74 cd02959 ERp19 Endoplasmic reti 98.8 1E-08 2.3E-13 85.0 5.4 68 68-151 19-89 (117)
75 PRK00293 dipZ thiol:disulfide 98.8 3E-08 6.5E-13 103.1 10.1 108 48-177 454-569 (571)
76 cd02973 TRX_GRX_like Thioredox 98.7 2.5E-08 5.4E-13 73.7 6.4 56 72-143 3-58 (67)
77 PTZ00062 glutaredoxin; Provisi 98.6 1.9E-07 4E-12 84.9 9.2 91 52-179 5-95 (204)
78 KOG0913 Thiol-disulfide isomer 98.6 2E-08 4.3E-13 91.3 2.3 107 46-182 24-130 (248)
79 TIGR02738 TrbB type-F conjugat 98.5 9.4E-07 2E-11 76.8 11.2 87 70-177 52-152 (153)
80 PRK03147 thiol-disulfide oxido 98.5 6.7E-07 1.5E-11 78.0 10.2 88 69-177 62-171 (173)
81 TIGR02740 TraF-like TraF-like 98.5 4.8E-07 1.1E-11 85.7 9.1 90 69-179 167-265 (271)
82 PHA02125 thioredoxin-like prot 98.5 2.5E-07 5.4E-12 70.4 5.1 50 72-142 2-51 (75)
83 cd03009 TryX_like_TryX_NRX Try 98.4 1.4E-06 3E-11 72.8 8.6 72 69-151 19-112 (131)
84 PF07912 ERp29_N: ERp29, N-ter 98.4 5.8E-06 1.3E-10 68.4 11.8 112 45-182 3-123 (126)
85 PF13098 Thioredoxin_2: Thiore 98.4 4.3E-07 9.3E-12 73.6 4.9 88 68-174 5-112 (112)
86 cd02955 SSP411 TRX domain, SSP 98.4 2.3E-06 4.9E-11 71.8 9.0 79 52-151 4-93 (124)
87 PRK13728 conjugal transfer pro 98.3 3.8E-06 8.3E-11 74.8 10.4 91 68-180 70-173 (181)
88 PRK15412 thiol:disulfide inter 98.3 9.7E-06 2.1E-10 72.3 11.7 86 68-178 68-176 (185)
89 TIGR00385 dsbE periplasmic pro 98.3 2.7E-06 5.9E-11 75.0 7.8 100 68-179 63-172 (173)
90 TIGR00412 redox_disulf_2 small 98.3 1.9E-06 4.2E-11 65.8 5.8 53 73-143 3-55 (76)
91 cd02964 TryX_like_family Trypa 98.3 4.4E-06 9.6E-11 70.1 8.5 71 68-151 17-112 (132)
92 cd03008 TryX_like_RdCVF Trypar 98.2 7.3E-06 1.6E-10 70.7 8.7 75 69-151 26-125 (146)
93 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 3.2E-06 6.9E-11 66.7 5.7 58 70-143 14-71 (89)
94 cd03010 TlpA_like_DsbE TlpA-li 98.2 7.3E-06 1.6E-10 68.0 7.6 77 69-151 26-113 (127)
95 cd02966 TlpA_like_family TlpA- 98.1 1.4E-05 3E-10 63.3 8.3 65 69-147 20-107 (116)
96 PF13848 Thioredoxin_6: Thiore 98.1 3.3E-05 7.1E-10 67.7 11.0 106 46-176 77-184 (184)
97 PF01216 Calsequestrin: Calseq 98.1 6.8E-06 1.5E-10 78.9 6.9 113 44-182 32-148 (383)
98 COG4232 Thiol:disulfide interc 98.1 1.8E-05 4E-10 80.9 10.0 99 55-177 464-567 (569)
99 cd02958 UAS UAS family; UAS is 98.1 1.7E-05 3.8E-10 64.9 8.0 102 55-178 5-111 (114)
100 cd03011 TlpA_like_ScsD_MtbDsbE 98.0 2.5E-05 5.4E-10 64.2 8.2 88 70-171 22-119 (123)
101 KOG0914 Thioredoxin-like prote 98.0 4.8E-05 1E-09 68.9 9.2 86 45-147 123-215 (265)
102 PLN02919 haloacid dehalogenase 97.9 3.2E-05 7E-10 86.0 9.4 90 68-178 420-536 (1057)
103 PF13905 Thioredoxin_8: Thiore 97.9 7.2E-05 1.6E-09 58.6 8.2 65 70-147 3-92 (95)
104 PF02114 Phosducin: Phosducin; 97.9 0.00013 2.9E-09 68.9 10.9 110 47-177 126-237 (265)
105 PF13899 Thioredoxin_7: Thiore 97.8 2.5E-05 5.4E-10 60.2 3.9 63 68-146 17-82 (82)
106 cd02967 mauD Methylamine utili 97.7 5.7E-05 1.2E-09 61.1 5.2 59 70-142 23-83 (114)
107 TIGR02661 MauD methylamine deh 97.7 0.00053 1.1E-08 61.4 11.9 86 67-175 73-176 (189)
108 cd03072 PDI_b'_ERp44 PDIb' fam 97.6 0.00058 1.2E-08 56.1 9.4 107 48-179 1-109 (111)
109 cd01659 TRX_superfamily Thiore 97.6 0.00028 6E-09 48.7 6.4 60 72-147 1-63 (69)
110 smart00594 UAS UAS domain. 97.6 0.00045 9.7E-09 57.5 8.5 105 52-174 12-121 (122)
111 cd03012 TlpA_like_DipZ_like Tl 97.5 0.00038 8.2E-09 57.8 8.0 64 70-147 25-115 (126)
112 PF06110 DUF953: Eukaryotic pr 97.5 0.00036 7.9E-09 58.0 7.5 81 54-146 6-98 (119)
113 COG2143 Thioredoxin-related pr 97.5 0.0022 4.9E-08 55.4 12.3 78 65-147 39-125 (182)
114 PF13728 TraF: F plasmid trans 97.5 0.00042 9.1E-09 63.6 8.2 83 69-172 121-212 (215)
115 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.001 2.2E-08 54.7 9.2 105 48-177 1-110 (111)
116 COG0526 TrxA Thiol-disulfide i 97.4 0.00057 1.2E-08 53.2 6.8 65 68-147 32-99 (127)
117 TIGR01626 ytfJ_HI0045 conserve 97.4 0.00072 1.6E-08 60.5 7.7 114 45-172 36-174 (184)
118 cd02960 AGR Anterior Gradient 97.2 0.0019 4.2E-08 54.6 8.7 67 67-150 22-91 (130)
119 PF05768 DUF836: Glutaredoxin- 97.2 0.00058 1.2E-08 52.7 5.1 80 72-175 2-81 (81)
120 KOG3356 Predicted membrane pro 97.2 0.00016 3.4E-09 58.9 1.3 113 221-336 26-145 (147)
121 TIGR02196 GlrX_YruB Glutaredox 97.2 0.00089 1.9E-08 49.1 5.2 52 72-144 2-57 (74)
122 cd03015 PRX_Typ2cys Peroxiredo 97.1 0.0035 7.6E-08 55.0 9.3 107 70-192 31-171 (173)
123 cd02969 PRX_like1 Peroxiredoxi 97.1 0.0048 1E-07 53.9 9.8 94 70-179 27-153 (171)
124 TIGR02739 TraF type-F conjugat 97.0 0.003 6.5E-08 59.4 8.8 86 70-176 152-246 (256)
125 cd02983 P5_C P5 family, C-term 97.0 0.0043 9.3E-08 52.4 8.3 112 47-182 3-119 (130)
126 KOG3425 Uncharacterized conser 96.9 0.0028 6.1E-08 52.3 6.7 66 70-146 27-104 (128)
127 TIGR02180 GRX_euk Glutaredoxin 96.9 0.0016 3.5E-08 49.5 4.7 55 72-143 1-60 (84)
128 TIGR02200 GlrX_actino Glutared 96.8 0.0022 4.9E-08 47.8 4.7 53 72-146 2-59 (77)
129 PLN02399 phospholipid hydroper 96.7 0.0083 1.8E-07 55.8 8.9 30 69-103 100-129 (236)
130 PRK13703 conjugal pilus assemb 96.6 0.0091 2E-07 55.9 8.5 85 70-175 145-238 (248)
131 PTZ00056 glutathione peroxidas 96.6 0.0088 1.9E-07 54.1 8.1 30 69-103 40-69 (199)
132 PRK11200 grxA glutaredoxin 1; 96.6 0.0044 9.6E-08 47.9 5.1 76 72-179 3-84 (85)
133 cd02991 UAS_ETEA UAS family, E 96.6 0.0094 2E-07 49.3 7.3 107 55-178 5-113 (116)
134 PF08534 Redoxin: Redoxin; In 96.5 0.014 3E-07 49.3 7.9 72 68-151 28-127 (146)
135 KOG2501 Thioredoxin, nucleored 96.5 0.0063 1.4E-07 52.8 5.7 70 68-147 33-125 (157)
136 cd02981 PDI_b_family Protein D 96.4 0.037 8E-07 43.3 9.5 68 88-176 29-96 (97)
137 KOG1672 ATP binding protein [P 96.2 0.024 5.2E-07 50.7 7.9 95 32-147 45-147 (211)
138 PF00462 Glutaredoxin: Glutare 96.2 0.016 3.5E-07 41.5 5.7 51 72-143 1-55 (60)
139 PF13192 Thioredoxin_3: Thiore 96.1 0.015 3.4E-07 44.0 5.9 67 83-175 9-76 (76)
140 TIGR03137 AhpC peroxiredoxin. 96.1 0.031 6.8E-07 49.9 8.7 91 70-175 33-153 (187)
141 PLN02412 probable glutathione 96.1 0.031 6.6E-07 49.0 8.5 30 69-103 30-59 (167)
142 PRK15000 peroxidase; Provision 96.1 0.039 8.5E-07 49.9 9.1 114 70-192 36-176 (200)
143 PRK10877 protein disulfide iso 95.9 0.012 2.5E-07 54.7 5.2 92 69-177 108-230 (232)
144 PRK09437 bcp thioredoxin-depen 95.9 0.055 1.2E-06 46.2 8.7 30 70-103 32-61 (154)
145 cd02976 NrdH NrdH-redoxin (Nrd 95.8 0.019 4.1E-07 41.8 5.0 51 72-143 2-56 (73)
146 cd00340 GSH_Peroxidase Glutath 95.8 0.03 6.6E-07 48.0 6.8 28 70-103 24-51 (152)
147 PF14595 Thioredoxin_9: Thiore 95.7 0.021 4.5E-07 48.2 5.2 79 49-147 26-107 (129)
148 TIGR02540 gpx7 putative glutat 95.6 0.075 1.6E-06 45.5 8.5 29 70-103 24-52 (153)
149 cd03419 GRX_GRXh_1_2_like Glut 95.5 0.02 4.3E-07 43.3 4.3 53 72-143 2-59 (82)
150 PRK13190 putative peroxiredoxi 95.4 0.076 1.6E-06 48.0 8.3 114 70-192 30-168 (202)
151 cd03017 PRX_BCP Peroxiredoxin 95.4 0.056 1.2E-06 45.0 7.0 31 70-104 25-55 (140)
152 PF00578 AhpC-TSA: AhpC/TSA fa 95.4 0.053 1.1E-06 44.0 6.5 44 69-125 26-69 (124)
153 PF13848 Thioredoxin_6: Thiore 95.3 0.074 1.6E-06 46.2 7.7 73 89-182 6-79 (184)
154 TIGR02194 GlrX_NrdH Glutaredox 95.3 0.033 7.2E-07 41.5 4.7 50 73-143 2-54 (72)
155 PRK00522 tpx lipid hydroperoxi 95.2 0.097 2.1E-06 45.7 8.0 29 70-102 46-74 (167)
156 cd03016 PRX_1cys Peroxiredoxin 95.1 0.15 3.3E-06 46.0 9.4 108 70-192 28-168 (203)
157 cd03020 DsbA_DsbC_DsbG DsbA fa 95.1 0.037 8.1E-07 49.6 5.2 89 69-174 78-197 (197)
158 PRK15317 alkyl hydroperoxide r 95.1 0.19 4.1E-06 51.9 11.0 77 47-143 99-175 (517)
159 TIGR02183 GRXA Glutaredoxin, G 95.0 0.042 9E-07 42.7 4.6 77 72-180 2-84 (86)
160 PRK10382 alkyl hydroperoxide r 95.0 0.17 3.7E-06 45.4 9.1 115 70-193 33-172 (187)
161 cd02066 GRX_family Glutaredoxi 94.9 0.068 1.5E-06 38.5 5.3 51 72-143 2-56 (72)
162 cd03014 PRX_Atyp2cys Peroxired 94.9 0.07 1.5E-06 44.8 6.0 29 70-102 28-56 (143)
163 PTZ00253 tryparedoxin peroxida 94.8 0.17 3.6E-06 45.6 8.6 109 70-192 38-178 (199)
164 PRK13599 putative peroxiredoxi 94.7 0.25 5.4E-06 45.3 9.7 114 69-192 30-170 (215)
165 PTZ00256 glutathione peroxidas 94.6 0.16 3.4E-06 45.1 7.9 28 71-103 44-71 (183)
166 TIGR02181 GRX_bact Glutaredoxi 94.5 0.059 1.3E-06 40.7 4.2 51 72-143 1-55 (79)
167 cd02970 PRX_like2 Peroxiredoxi 94.5 0.098 2.1E-06 43.8 6.0 44 70-127 26-69 (149)
168 cd03418 GRX_GRXb_1_3_like Glut 94.4 0.096 2.1E-06 38.8 5.2 51 72-143 2-57 (75)
169 PF07449 HyaE: Hydrogenase-1 e 94.3 0.17 3.7E-06 41.3 6.7 85 45-147 8-92 (107)
170 cd02968 SCO SCO (an acronym fo 94.3 0.1 2.2E-06 43.6 5.6 31 70-104 24-54 (142)
171 TIGR02190 GlrX-dom Glutaredoxi 94.2 0.099 2.1E-06 39.8 5.0 55 68-143 6-63 (79)
172 TIGR03140 AhpF alkyl hydropero 94.2 0.46 1E-05 49.0 11.3 77 47-143 100-176 (515)
173 TIGR03143 AhpF_homolog putativ 94.1 0.23 5E-06 51.8 9.0 96 47-174 459-554 (555)
174 KOG0911 Glutaredoxin-related p 94.0 0.025 5.3E-07 51.8 1.3 65 67-147 16-80 (227)
175 PRK10329 glutaredoxin-like pro 93.8 0.11 2.3E-06 40.1 4.4 51 72-143 3-56 (81)
176 PRK13189 peroxiredoxin; Provis 93.7 0.42 9E-06 44.0 8.9 115 69-192 37-177 (222)
177 KOG3170 Conserved phosducin-li 93.6 0.8 1.7E-05 41.4 10.0 118 33-177 77-200 (240)
178 KOG3171 Conserved phosducin-li 93.2 0.49 1.1E-05 43.2 8.2 109 47-177 139-250 (273)
179 TIGR02189 GlrX-like_plant Glut 93.0 0.22 4.7E-06 39.9 5.1 51 71-142 9-66 (99)
180 cd02972 DsbA_family DsbA famil 92.8 0.4 8.7E-06 36.3 6.4 58 73-145 2-91 (98)
181 cd03027 GRX_DEP Glutaredoxin ( 92.4 0.34 7.4E-06 36.0 5.3 51 72-143 3-57 (73)
182 PRK13191 putative peroxiredoxi 92.3 0.71 1.5E-05 42.2 8.3 109 69-192 35-175 (215)
183 PTZ00137 2-Cys peroxiredoxin; 92.3 1 2.2E-05 42.6 9.5 113 70-192 100-239 (261)
184 cd03029 GRX_hybridPRX5 Glutare 92.3 0.36 7.8E-06 35.7 5.3 50 72-142 3-55 (72)
185 cd03067 PDI_b_PDIR_N PDIb fami 92.3 0.96 2.1E-05 36.5 7.8 94 54-176 10-110 (112)
186 cd02971 PRX_family Peroxiredox 92.3 0.42 9.2E-06 39.5 6.3 30 70-103 24-53 (140)
187 PRK10638 glutaredoxin 3; Provi 91.7 0.4 8.6E-06 36.6 5.0 51 72-143 4-58 (83)
188 cd03018 PRX_AhpE_like Peroxire 91.4 0.39 8.5E-06 40.3 5.2 29 70-103 30-59 (149)
189 PHA03050 glutaredoxin; Provisi 91.2 0.51 1.1E-05 38.5 5.5 55 71-143 14-75 (108)
190 cd03069 PDI_b_ERp57 PDIb famil 91.0 2.3 4.9E-05 34.1 9.0 96 53-177 8-103 (104)
191 TIGR03143 AhpF_homolog putativ 91.0 1.1 2.4E-05 46.7 9.1 60 70-145 368-427 (555)
192 PF11009 DUF2847: Protein of u 90.8 0.86 1.9E-05 37.1 6.3 78 52-147 6-88 (105)
193 KOG3414 Component of the U4/U6 90.3 1.4 3.1E-05 36.9 7.3 108 68-193 23-138 (142)
194 cd03028 GRX_PICOT_like Glutare 90.0 0.92 2E-05 35.4 5.8 56 70-143 9-69 (90)
195 COG0695 GrxC Glutaredoxin and 89.5 0.88 1.9E-05 34.9 5.2 52 72-144 3-60 (80)
196 cd03066 PDI_b_Calsequestrin_mi 88.5 6.5 0.00014 31.1 9.9 97 48-177 2-100 (102)
197 cd03068 PDI_b_ERp72 PDIb famil 87.1 4.8 0.0001 32.5 8.3 101 49-176 3-106 (107)
198 PRK10606 btuE putative glutath 86.2 1.5 3.3E-05 39.2 5.3 29 69-103 26-54 (183)
199 PF01307 Plant_vir_prot: Plant 85.3 1.6 3.4E-05 35.5 4.5 62 186-271 2-63 (104)
200 PF03190 Thioredox_DsbH: Prote 84.8 3.3 7.2E-05 36.4 6.6 80 50-150 24-114 (163)
201 TIGR00365 monothiol glutaredox 84.7 3 6.5E-05 33.1 5.9 45 82-143 25-73 (97)
202 PRK12759 bifunctional gluaredo 83.3 1.9 4.1E-05 43.4 5.2 51 72-143 4-66 (410)
203 cd03023 DsbA_Com1_like DsbA fa 82.9 2.7 5.9E-05 34.9 5.3 27 70-101 7-33 (154)
204 PRK10824 glutaredoxin-4; Provi 81.2 3.1 6.7E-05 34.4 4.8 56 72-144 17-77 (115)
205 PF13462 Thioredoxin_4: Thiore 81.0 4.6 9.9E-05 34.0 6.1 44 69-125 13-56 (162)
206 KOG1752 Glutaredoxin and relat 77.7 6 0.00013 32.1 5.4 55 71-144 15-74 (104)
207 TIGR02742 TrbC_Ftype type-F co 70.5 8.1 0.00018 32.6 4.6 27 121-147 55-81 (130)
208 PF05915 DUF872: Eukaryotic pr 69.9 18 0.0004 29.8 6.5 68 276-344 41-114 (115)
209 KOG2640 Thioredoxin [Function 68.9 8.9 0.00019 37.0 5.0 108 48-179 56-163 (319)
210 PF09673 TrbC_Ftype: Type-F co 68.5 6.8 0.00015 32.1 3.7 26 121-146 55-80 (113)
211 PRK10954 periplasmic protein d 67.9 5.2 0.00011 36.1 3.2 20 71-95 40-59 (207)
212 cd03031 GRX_GRX_like Glutaredo 66.8 15 0.00032 31.7 5.5 57 71-144 2-67 (147)
213 cd03019 DsbA_DsbA DsbA family, 64.9 9.3 0.0002 32.7 4.1 28 70-102 17-44 (178)
214 PF02966 DIM1: Mitosis protein 64.7 41 0.00088 28.5 7.6 61 68-144 20-81 (133)
215 KOG4277 Uncharacterized conser 64.5 37 0.00081 32.9 8.2 114 47-177 234-350 (468)
216 PTZ00062 glutaredoxin; Provisi 64.0 18 0.00039 32.9 5.9 46 82-144 126-175 (204)
217 PF07172 GRP: Glycine rich pro 63.6 4.8 0.0001 32.1 1.8 13 5-17 3-15 (95)
218 PRK11657 dsbG disulfide isomer 51.1 16 0.00034 34.2 3.3 25 69-98 118-142 (251)
219 COG3671 Predicted membrane pro 48.5 58 0.0013 27.1 5.8 61 271-347 62-124 (125)
220 PF06570 DUF1129: Protein of u 47.6 41 0.00089 30.3 5.4 65 265-329 102-169 (206)
221 PRK00068 hypothetical protein; 47.5 2.9E+02 0.0064 31.1 12.6 86 247-332 140-237 (970)
222 cd03013 PRX5_like Peroxiredoxi 45.5 41 0.0009 28.8 4.9 55 70-135 31-88 (155)
223 COG1999 Uncharacterized protei 43.1 99 0.0021 28.0 7.2 75 49-135 50-127 (207)
224 PLN02250 lipid phosphate phosp 38.9 2E+02 0.0044 27.9 9.0 26 228-253 103-128 (314)
225 KOG1364 Predicted ubiquitin re 38.1 62 0.0014 31.8 5.2 58 114-177 131-188 (356)
226 PF06946 Phage_holin_5: Phage 36.8 1.6E+02 0.0034 23.5 6.3 50 273-322 2-51 (93)
227 PHA02132 hypothetical protein 35.3 2E+02 0.0042 21.7 7.0 28 272-299 1-28 (86)
228 PRK13730 conjugal transfer pil 35.0 26 0.00055 32.0 1.9 22 124-145 149-170 (212)
229 PRK11657 dsbG disulfide isomer 34.6 31 0.00068 32.2 2.6 44 125-176 207-250 (251)
230 COG3462 Predicted membrane pro 34.6 81 0.0017 25.8 4.5 53 4-60 53-112 (117)
231 COG0838 NuoA NADH:ubiquinone o 34.5 2.8E+02 0.006 23.2 8.6 67 229-303 22-88 (123)
232 PF02630 SCO1-SenC: SCO1/SenC; 34.3 74 0.0016 27.8 4.8 33 68-104 52-84 (174)
233 PF07172 GRP: Glycine rich pro 34.1 33 0.00071 27.3 2.2 21 7-27 1-21 (95)
234 cd03074 PDI_b'_Calsequestrin_C 34.0 2.7E+02 0.0058 23.0 9.4 108 51-177 6-119 (120)
235 PRK02509 hypothetical protein; 33.8 6.9E+02 0.015 28.3 12.8 85 247-332 214-307 (973)
236 cd03040 GST_N_mPGES2 GST_N fam 33.2 89 0.0019 22.7 4.4 37 131-179 41-77 (77)
237 PRK12559 transcriptional regul 32.2 53 0.0011 27.5 3.3 89 72-189 2-94 (131)
238 PF00837 T4_deiodinase: Iodoth 30.9 44 0.00096 31.2 2.8 50 47-103 83-132 (237)
239 PRK01655 spxA transcriptional 30.8 54 0.0012 27.4 3.2 35 72-127 2-36 (131)
240 PRK07668 hypothetical protein; 30.6 2E+02 0.0043 27.2 7.1 34 224-257 142-175 (254)
241 PF11085 YqhR: Conserved membr 30.5 1.5E+02 0.0033 26.3 5.9 17 311-327 132-148 (173)
242 COG3088 CcmH Uncharacterized p 27.1 1.3E+02 0.0028 26.1 4.8 34 164-198 77-110 (153)
243 cd02977 ArsC_family Arsenate R 26.5 66 0.0014 25.4 2.8 88 73-189 2-94 (105)
244 PF13462 Thioredoxin_4: Thiore 26.0 94 0.002 25.8 3.9 37 127-176 126-162 (162)
245 PRK13344 spxA transcriptional 25.6 83 0.0018 26.4 3.4 34 73-127 3-36 (132)
246 PF11287 DUF3088: Protein of u 25.2 2.5E+02 0.0054 23.2 5.9 87 81-181 21-110 (112)
247 CHL00036 ycf4 photosystem I as 25.0 1.3E+02 0.0028 26.9 4.6 53 224-293 21-77 (184)
248 PF03699 UPF0182: Uncharacteri 25.0 9.6E+02 0.021 26.5 12.2 86 247-332 132-225 (774)
249 TIGR02654 circ_KaiB circadian 24.6 1.8E+02 0.0039 22.8 4.8 51 88-147 17-67 (87)
250 cd02978 KaiB_like KaiB-like fa 24.3 2.1E+02 0.0045 21.6 5.0 50 89-147 16-65 (72)
251 PF05814 DUF843: Baculovirus p 24.2 2.5E+02 0.0054 21.8 5.4 27 312-338 26-52 (83)
252 PRK03776 phosphoglycerol trans 24.2 5E+02 0.011 28.6 9.6 70 221-295 22-92 (762)
253 PF10958 DUF2759: Protein of u 23.7 1E+02 0.0023 21.8 3.0 36 303-338 15-50 (52)
254 cd03035 ArsC_Yffb Arsenate Red 23.6 79 0.0017 25.3 2.8 41 73-134 2-49 (105)
255 PRK02542 photosystem I assembl 23.3 1.4E+02 0.0031 26.8 4.5 53 224-293 25-81 (188)
256 PF07125 DUF1378: Protein of u 23.0 1.1E+02 0.0023 22.0 2.9 21 7-27 4-24 (59)
257 TIGR03147 cyt_nit_nrfF cytochr 22.9 1.8E+02 0.0039 24.4 4.8 27 163-190 72-98 (126)
258 PRK09301 circadian clock prote 22.9 2.2E+02 0.0047 23.1 5.1 51 88-147 20-70 (103)
259 PF13743 Thioredoxin_5: Thiore 22.8 37 0.00081 29.8 0.8 22 125-146 135-156 (176)
260 PF15383 TMEM237: Transmembran 22.6 1.1E+02 0.0025 28.7 4.0 75 272-346 132-218 (253)
261 COG5429 Uncharacterized secret 21.4 95 0.0021 29.0 3.1 71 69-146 42-120 (261)
262 PF10856 DUF2678: Protein of u 20.0 1.2E+02 0.0026 25.2 3.1 33 289-321 72-105 (118)
263 cd03036 ArsC_like Arsenate Red 20.0 1.3E+02 0.0029 24.1 3.4 89 74-189 3-95 (111)
No 1
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-70 Score=506.13 Aligned_cols=309 Identities=35% Similarity=0.550 Sum_probs=269.1
Q ss_pred cCCCChhHHHHHHHHHh-cCCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343 26 TSDSNSDLVSELLNLQS-QSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA 104 (347)
Q Consensus 26 ~~~~~~~~~~~L~~l~~-~s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~ 104 (347)
.+.+..|..+++.+|++ +++++||++||++|+.++ +.+||||+++|+|||.+++.+|+. |++++.||+.||+||+.
T Consensus 19 ~~~~~s~ls~kv~~L~~~ts~~~VI~~n~d~~~~~v--~~~prNys~IvmftA~~~~~~C~l-C~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 19 QAQTKSDLSNKVVQLMSWTSESGVIRMNDDKFSKFV--RPPPRNYSLIVMFTALQPHSQCQL-CLQAEEEFQIVANSWRY 95 (331)
T ss_pred ccchhhHHHHHHHHHHhccCCCCeEEecCcchhhhc--cCCCCCeEEEEEccccCCCCcCch-hhhHHHHHHHHHHHhhc
Confidence 34444333566666666 678999999999999999 689999999999999999999999 89999999999999999
Q ss_pred cCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCc
Q 048343 105 NNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGP 184 (347)
Q Consensus 105 ~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~ 184 (347)
++|++ ++.++||++||+||.+++||+++++++||+.+|+|..|+.+ ..+++++++.+..||++++|++++|.+++..
T Consensus 96 ~~~~s--n~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~s 172 (331)
T KOG2603|consen 96 NSPFS--NGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQFVADRTKVNVRS 172 (331)
T ss_pred cCCCC--CcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccc-cCccchhhhcchhHHHHHHHHHHhhhheeee
Confidence 98763 45699999999999999999999999999999999877766 6788999888888999999999999999877
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCceE
Q 048343 185 IHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLV 264 (347)
Q Consensus 185 i~~p~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~l~~k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~ 264 (347)
|+||+||++..+..++.+.+ ..++++.+..++++.+|.+|+++|+++++.|+||+|||+|||+||+++|+++ |+++
T Consensus 173 i~rPp~~s~~iivaliva~i---~~li~~k~~~l~fl~~r~~w~~lsl~i~f~~iSG~M~n~IR~~P~~~~dp~~-~~~~ 248 (331)
T KOG2603|consen 173 IQRPPNYSKPIIVALIVALI---GGLIYKKRSNLTFLSNRTIWAVLSLFIVFFMISGQMWNHIRGPPYAIKDPHT-GKVV 248 (331)
T ss_pred eecCCcccchhHHHHHHHHH---HHHHHHHhccchhhhhHHHHHHHHHhheeeeechhHHHHhcCCcceeeCCCC-CeEE
Confidence 99999999975444433333 3333433335788999999999999999999999999999999999999864 8899
Q ss_pred EEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccccccCcc--chhHHHHHHHHHHHHHHHHHhhhhhccC-CCCcCcc
Q 048343 265 FFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVS--IQRWVMIVSLLISFWAVNKVIYLDNWKT-GYGVHGF 341 (347)
Q Consensus 265 yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~~~~--~~~~~~~~~~~~~f~~~s~l~s~~~~K~-~y~~~~~ 341 (347)
||++|+|+|||+|||+|+++|+++|+++++|++.+-..++.. +++...+.++.+.++.||+++++|+.|. |||+
T Consensus 249 f~~g~Sq~Qf~aEtfiV~lly~~v~ll~vll~~~~~~~~~~~~~k~~~l~~~~i~~~~vFfs~~ls~f~~ky~gYPy--- 325 (331)
T KOG2603|consen 249 FIHGSSQAQFGAETFIVGLLYGVVSLLMVLLTEAATSSKSIDYQKRKMLLIAGLSCVAVFFSVLLSVFRIKYPGYPY--- 325 (331)
T ss_pred EEeCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCc---
Confidence 999999999999999999999999999999999887777777 7788888888888999999999999998 6665
Q ss_pred CCCCCC
Q 048343 342 WPSSWN 347 (347)
Q Consensus 342 ~p~~~~ 347 (347)
||.+|.
T Consensus 326 ~~l~~~ 331 (331)
T KOG2603|consen 326 SFLSWR 331 (331)
T ss_pred CccccC
Confidence 888873
No 2
>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.
Probab=99.97 E-value=1e-33 Score=247.57 Aligned_cols=142 Identities=31% Similarity=0.458 Sum_probs=13.0
Q ss_pred HHHHHHHhhcCCCCCcccCCCCchhHHHHHHHHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHhhcchhhhhcC
Q 048343 169 SMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIR 248 (347)
Q Consensus 169 ~l~~fi~~~t~~~i~~i~~p~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~l~~k~lW~~~sl~~i~~~isG~mfn~Ir 248 (347)
++++|+++++++++++|+||+||++.......+++++++.++.||. .++.++||.+|+++|++++++++||||||+||
T Consensus 1 ~~a~f~~~~t~i~~~~i~~P~~~~~~~~~i~~~i~~~~~~~~~k~~--~~~~~~~r~lw~~~sl~~~~~~~SG~mfn~Ir 78 (160)
T PF04756_consen 1 QIAPFVKFRTGIPIFKIYRPPNYSKPSIFITFFIVFVAVFLYIKRS--ILPFLRSRFLWAVLSLIIILLSTSGYMFNIIR 78 (160)
T ss_dssp -HHHHHHHHHHHHT-------S----------------------------------------------------------
T ss_pred ChhhHHHHHcCCCeeEEeCCCCcchhHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999998789999999988522222223233334445554 45677999999999999999999999999999
Q ss_pred CCCceecCCCCCC--ceEEEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccccccCccch-hHHHHH
Q 048343 249 KMPMFLADRNDPN--KLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQ-RWVMIV 314 (347)
Q Consensus 249 ~~P~~~~~~~~~g--~i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~~~~~~-~~~~~~ 314 (347)
|+||+++|+| | .+.|++||+|+|||+|||++|++|+++|+++++|++.+|+.++.+.+ +...+.
T Consensus 79 ~~P~~~~~~~--g~~~i~f~~g~~~~QfgiE~~iv~~ly~~la~~~i~L~~~~~~~~~~~~~~~~~~~~ 145 (160)
T PF04756_consen 79 GPPFIGRDPD--GSRPIYFFSGGSQGQFGIEGQIVSFLYGVLALGFILLIYAAPKKKNSPKQRRILLIS 145 (160)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCccccCCC--CCCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhhHHHH
Confidence 9999999999 8 78999999999999999999999999999999999999887766554 444333
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.73 E-value=2.4e-17 Score=136.10 Aligned_cols=105 Identities=17% Similarity=0.074 Sum_probs=86.9
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
..+|++||++||++.+. -..++..++|.|+|+ ||++ |+.+.|+|+++|+.+. +++.|+++|++
T Consensus 8 ~~~v~~l~~~~f~~~~~--v~~~~~~vlV~FyA~----WC~~-Ck~l~p~~~~la~~~~----------~~v~~~~Vd~d 70 (113)
T cd03006 8 RSPVLDFYKGQLDYAEE--LRTDAEVSLVMYYAP----WDAQ-SQAARQEFEQVAQKLS----------DQVLFVAINCW 70 (113)
T ss_pred CCCeEEechhhhHHHHh--cccCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHhc----------CCeEEEEEECC
Confidence 35699999999999731 112356899999999 8999 8999999999999872 35999999999
Q ss_pred CCcchH-hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 125 ESQSSF-ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 125 ~~~~lf-~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
++++++ ++++|+++||+.+|+.| +. ...|.|++++++|.+|+
T Consensus 71 ~~~~l~~~~~~I~~~PTl~lf~~g--~~------~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 71 WPQGKCRKQKHFFYFPVIHLYYRS--RG------PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CChHHHHHhcCCcccCEEEEEECC--cc------ceEEeCCCCHHHHHhhC
Confidence 999998 58999999999999864 32 24577889999998874
No 4
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.72 E-value=6.4e-17 Score=131.57 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=88.9
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+|+++|++||++.+ +. +..++|.|+|+ ||++ |+++.|+|+++|+.+.+.+| +.+++.|+++|++++
T Consensus 2 ~v~~l~~~~f~~~i---~~--~~~vlv~F~a~----wC~~-C~~~~p~~~~~a~~~~~~~~----~~~~~~~~~vd~d~~ 67 (108)
T cd02996 2 EIVSLTSGNIDDIL---QS--AELVLVNFYAD----WCRF-SQMLHPIFEEAAAKIKEEFP----DAGKVVWGKVDCDKE 67 (108)
T ss_pred ceEEcCHhhHHHHH---hc--CCEEEEEEECC----CCHH-HHhhHHHHHHHHHHHhhccC----CCCcEEEEEEECCCC
Confidence 68999999999987 33 23689999999 8999 89999999999998865442 224699999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
++++++++++++||+++|++| ... ...+.+.++.++|.+||
T Consensus 68 ~~l~~~~~v~~~Ptl~~~~~g--~~~-----~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 68 SDIADRYRINKYPTLKLFRNG--MMM-----KREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHHHhCCCCcCCEEEEEeCC--cCc-----ceecCCCCCHHHHHhhC
Confidence 999999999999999999864 311 14566788999999885
No 5
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.70 E-value=7.8e-17 Score=133.16 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=82.0
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK- 124 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~- 124 (347)
+|+++||++||++.+ ++ +..++|.|+|+|| ||+ + .|+++++|.+|.+. .+.|.+++||++
T Consensus 1 ~g~v~L~~~nF~~~v---~~--~~~vlV~F~A~~P--wc~---k--~~~~~~LA~e~~~a-------a~~v~lakVd~~d 61 (116)
T cd03007 1 KGCVDLDTVTFYKVI---PK--FKYSLVKFDTAYP--YGE---K--HEAFTRLAESSASA-------TDDLLVAEVGIKD 61 (116)
T ss_pred CCeeECChhhHHHHH---hc--CCcEEEEEeCCCC--CCC---C--hHHHHHHHHHHHhh-------cCceEEEEEeccc
Confidence 479999999999998 33 3369999999763 775 2 25555666555432 235999999994
Q ss_pred ----CCcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccc-cCHHHHHHHHHhhc
Q 048343 125 ----ESQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMAESMADFVQSRT 178 (347)
Q Consensus 125 ----~~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a~~l~~fi~~~t 178 (347)
++++++++|+|+ ++||+.+|+.+. . +....|.++ +++++|.+||++++
T Consensus 62 ~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~-~-----~~~~~Y~G~~r~~~~lv~~v~~~~ 116 (116)
T cd03007 62 YGEKLNMELGERYKLDKESYPVIYLFHGGD-F-----ENPVPYSGADVTVDALQRFLKGNT 116 (116)
T ss_pred ccchhhHHHHHHhCCCcCCCCEEEEEeCCC-c-----CCCccCCCCcccHHHHHHHHHhcC
Confidence 567899999999 999999999642 1 112467786 99999999999874
No 6
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.70 E-value=9.4e-17 Score=129.36 Aligned_cols=102 Identities=21% Similarity=0.186 Sum_probs=85.9
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+++++|++||++.+ .++ +..++|.|||+ ||++ |+.+.|.|+++|+++ .+++.|+++|++++
T Consensus 2 ~v~~l~~~~f~~~i---~~~-~~~v~v~f~a~----wC~~-C~~~~p~~~~~~~~~----------~~~~~~~~vd~~~~ 62 (104)
T cd03004 2 SVITLTPEDFPELV---LNR-KEPWLVDFYAP----WCGP-CQALLPELRKAARAL----------KGKVKVGSVDCQKY 62 (104)
T ss_pred cceEcCHHHHHHHH---hcC-CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------cCCcEEEEEECCch
Confidence 58999999999997 332 33799999999 8999 899999999999987 23699999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccC-HHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARM-AESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~-a~~l~~fi 174 (347)
++++++++|+++||+++|+++ ++. ...+.|..+ +++|.+||
T Consensus 63 ~~~~~~~~i~~~Pt~~~~~~g-~~~------~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 63 ESLCQQANIRAYPTIRLYPGN-ASK------YHSYNGWHRDADSILEFI 104 (104)
T ss_pred HHHHHHcCCCcccEEEEEcCC-CCC------ceEccCCCCCHHHHHhhC
Confidence 999999999999999999975 232 255667666 89998885
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.70 E-value=1.5e-16 Score=127.73 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=85.5
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
++|++||++||++.+ +. +..++|.|||+ ||++ |+++.|+|+++|+.+ ++++.|+++|+++
T Consensus 1 ~~~~~l~~~~f~~~v---~~--~~~~~v~f~a~----wC~~-C~~~~p~~~~~a~~~----------~~~~~~~~vd~~~ 60 (101)
T cd03003 1 PEIVTLDRGDFDAAV---NS--GEIWFVNFYSP----RCSH-CHDLAPTWREFAKEM----------DGVIRIGAVNCGD 60 (101)
T ss_pred CCeEEcCHhhHHHHh---cC--CCeEEEEEECC----CChH-HHHhHHHHHHHHHHh----------cCceEEEEEeCCc
Confidence 368999999999987 33 24799999999 8999 899999999999987 2359999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHH
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADF 173 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~f 173 (347)
+++++++++++++||+++|+.| .. ...+.|.++.++|.+|
T Consensus 61 ~~~~~~~~~v~~~Pt~~~~~~g--~~------~~~~~G~~~~~~l~~f 100 (101)
T cd03003 61 DRMLCRSQGVNSYPSLYVFPSG--MN------PEKYYGDRSKESLVKF 100 (101)
T ss_pred cHHHHHHcCCCccCEEEEEcCC--CC------cccCCCCCCHHHHHhh
Confidence 9999999999999999999864 32 2456778889988877
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.68 E-value=3e-16 Score=124.91 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=89.2
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
|+.+|+++|++.+ .. .+..++|+|+++ ||++ |+.+.|.++++|+++. +++.|+++|.++++
T Consensus 1 v~~lt~~~f~~~i---~~-~~~~vvv~f~~~----~C~~-C~~~~~~~~~~~~~~~----------~~v~~~~vd~~~~~ 61 (103)
T PF00085_consen 1 VIVLTDENFEKFI---NE-SDKPVVVYFYAP----WCPP-CKAFKPILEKLAKEYK----------DNVKFAKVDCDENK 61 (103)
T ss_dssp SEEESTTTHHHHH---TT-TSSEEEEEEEST----TSHH-HHHHHHHHHHHHHHTT----------TTSEEEEEETTTSH
T ss_pred CEECCHHHHHHHH---Hc-cCCCEEEEEeCC----CCCc-cccccceecccccccc----------cccccchhhhhccc
Confidence 6789999999998 33 246899999998 8999 8999999999999872 37999999999999
Q ss_pred chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
+++++++++++|++++|.+| ... .++.+.+++++|.+||+++
T Consensus 62 ~l~~~~~v~~~Pt~~~~~~g--~~~------~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 62 ELCKKYGVKSVPTIIFFKNG--KEV------KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp HHHHHTTCSSSSEEEEEETT--EEE------EEEESSSSHHHHHHHHHHH
T ss_pred hhhhccCCCCCCEEEEEECC--cEE------EEEECCCCHHHHHHHHHcC
Confidence 99999999999999999874 322 3566778999999999875
No 9
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.68 E-value=1.4e-15 Score=139.73 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=91.9
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
+++|+++|++||++.+....+..+..++|.|||+ ||++ |++++|+|+++|+++. +.+.|+++|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyAp----WC~~-Ck~~~P~~e~la~~~~----------~~v~~~~VD~~ 93 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAP----WCSH-CRKMAPAWERLAKALK----------GQVNVADLDAT 93 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECC----CChH-HHHHHHHHHHHHHHcC----------CCeEEEEecCc
Confidence 4579999999999987210111245789999999 8999 8999999999999872 35899999999
Q ss_pred CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT 181 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~ 181 (347)
++++++++|+|+++||+++|+.| +.. +.+.+.++.+++.+|+.+.....
T Consensus 94 ~~~~l~~~~~I~~~PTl~~f~~G--~~v------~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 94 RALNLAKRFAIKGYPTLLLFDKG--KMY------QYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred ccHHHHHHcCCCcCCEEEEEECC--EEE------EeeCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999953 321 22345688999999999887543
No 10
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.67 E-value=3e-16 Score=130.76 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChh-hcc--cchHHHHHHHHHhhhcCCCCCCCCCceEEEE
Q 048343 44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPEL-HLQ--ELRNEFSLVASSFIANNVDNPSSRGKLFFCY 120 (347)
Q Consensus 44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~-cC~--~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~ 120 (347)
..+.|++||++||++.+. ++ +..+|++|+|+ ||++ .|+ .++|.++++|..+.+ .+++.|++
T Consensus 7 ~~~~v~~lt~~nF~~~v~--~~--~~~vvv~f~a~----wc~p~~Ck~~~~~p~~~~~aa~~l~--------~~~v~~~k 70 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLK--KY--DVLCLLYHEPV----ESDKEAQKQFQMEELVLELAAQVLE--------DKGIGFGL 70 (120)
T ss_pred CCcceeeCChhhHHHHHH--hC--CceEEEEECCC----cCChhhChhhcchhhHHHHHHHHhh--------cCCCEEEE
Confidence 345799999999999982 33 55788888887 7854 169 889999999988754 24699999
Q ss_pred EEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 121 LEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 121 vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
||++++++++++|||+++||+++|+.| +.. . +.|.++++.+.+||++.
T Consensus 71 VD~d~~~~La~~~~I~~iPTl~lfk~G--~~v------~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 71 VDSKKDAKVAKKLGLDEEDSIYVFKDD--EVI------E-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred EeCCCCHHHHHHcCCccccEEEEEECC--EEE------E-eeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999864 332 4 67888999999999874
No 11
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.66 E-value=7.3e-16 Score=123.49 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=85.0
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+|++||+++|++.+ +++ ++|.|||+ ||++ |+++.|.|+++|+.+. ..++.|+++|++++
T Consensus 2 ~v~~l~~~~f~~~~---~~~----~lv~f~a~----wC~~-C~~~~p~~~~l~~~~~---------~~~v~~~~vd~~~~ 60 (101)
T cd02994 2 NVVELTDSNWTLVL---EGE----WMIEFYAP----WCPA-CQQLQPEWEEFADWSD---------DLGINVAKVDVTQE 60 (101)
T ss_pred ceEEcChhhHHHHh---CCC----EEEEEECC----CCHH-HHHHhHHHHHHHHhhc---------cCCeEEEEEEccCC
Confidence 59999999999987 442 68999999 8999 8999999999998641 23699999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
++++++++++++||+++|++| .. ..+.|.++.++|.+|+++
T Consensus 61 ~~~~~~~~i~~~Pt~~~~~~g--~~-------~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 61 PGLSGRFFVTALPTIYHAKDG--VF-------RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred HhHHHHcCCcccCEEEEeCCC--CE-------EEecCCCCHHHHHHHHhC
Confidence 999999999999999999764 21 345678899999999864
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.64 E-value=1.5e-15 Score=123.06 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=87.0
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE- 125 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~- 125 (347)
+|+++|+++|++.+ .++ +..++|.|+|+ ||++ |+++.|+|+++|+.+. +++.|+.+|+++
T Consensus 1 ~v~~l~~~~~~~~i---~~~-~~~~lv~f~a~----wC~~-C~~~~~~~~~~a~~~~----------~~~~~~~v~~~~~ 61 (109)
T cd03002 1 PVYELTPKNFDKVV---HNT-NYTTLVEFYAP----WCGH-CKNLKPEYAKAAKELD----------GLVQVAAVDCDED 61 (109)
T ss_pred CeEEcchhhHHHHH---hcC-CCeEEEEEECC----CCHH-HHhhChHHHHHHHHhc----------CCceEEEEecCcc
Confidence 48999999999998 332 34699999999 8999 8999999999999872 358899999998
Q ss_pred -CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 126 -SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 126 -~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++++++++++|++++|+++. +. .......|.|.++.+++.+||
T Consensus 62 ~~~~~~~~~~i~~~Pt~~~~~~~~-~~--~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 62 KNKPLCGKYGVQGFPTLKVFRPPK-KA--SKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ccHHHHHHcCCCcCCEEEEEeCCC-cc--cccccccccCccCHHHHHHHh
Confidence 78999999999999999999863 11 011235667889999999997
No 13
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.63 E-value=2.5e-15 Score=120.16 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=85.8
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
|+++|+++|++.+ ..+ +..++|+|+|+ ||++ |+++.|+|+++|+.+. +++.|+.+|.++++
T Consensus 2 v~~l~~~~~~~~i---~~~-~~~vlv~f~a~----~C~~-C~~~~~~~~~~~~~~~----------~~~~~~~id~~~~~ 62 (103)
T cd03001 2 VVELTDSNFDKKV---LNS-DDVWLVEFYAP----WCGH-CKNLAPEWKKAAKALK----------GIVKVGAVDADVHQ 62 (103)
T ss_pred eEEcCHHhHHHHH---hcC-CCcEEEEEECC----CCHH-HHHHhHHHHHHHHHhc----------CCceEEEEECcchH
Confidence 7899999999987 332 33588999998 8999 8999999999998872 36999999999999
Q ss_pred chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++++++++|++++|+++. .. ...+.++++.+++.+|+
T Consensus 63 ~~~~~~~i~~~P~~~~~~~~~-~~------~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 63 SLAQQYGVRGFPTIKVFGAGK-NS------PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHHHHCCCCccCEEEEECCCC-cc------eeecCCCCCHHHHHHHh
Confidence 999999999999999999752 21 24567789999999996
No 14
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.9e-16 Score=143.36 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=97.7
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
.+|+++|+.||++.| ....|.-.|+|+|||| ||++ |+++.|..|+++.+| ++++.+++||+|+
T Consensus 23 ~~I~dvT~anfe~~V--~~~S~~~PVlV~fWap----~~~~-c~qL~p~Lekla~~~----------~G~f~LakvN~D~ 85 (304)
T COG3118 23 PGIKDVTEANFEQEV--IQSSREVPVLVDFWAP----WCGP-CKQLTPTLEKLAAEY----------KGKFKLAKVNCDA 85 (304)
T ss_pred ccceechHhHHHHHH--HHHccCCCeEEEecCC----CCch-HHHHHHHHHHHHHHh----------CCceEEEEecCCc
Confidence 369999999999988 4677788999999999 8999 899999999999987 4689999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL 180 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~ 180 (347)
++.+..+|||+++||++.|..| .+. +.+.|..+.+++.+|+.+..+.
T Consensus 86 ~p~vAaqfgiqsIPtV~af~dG--qpV------dgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 86 EPMVAAQFGVQSIPTVYAFKDG--QPV------DGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred chhHHHHhCcCcCCeEEEeeCC--cCc------cccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999999974 443 4456677888999999998886
No 15
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.62 E-value=2.3e-15 Score=120.19 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=85.4
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+++++|+++|++.+ +.+ .++|.|+|+ ||++ |+++.|+++++|+++... ..++.|+++|.+++
T Consensus 1 ~~~~l~~~~f~~~~---~~~---~~lv~f~a~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~ 62 (102)
T cd03005 1 GVLELTEDNFDHHI---AEG---NHFVKFFAP----WCGH-CKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH 62 (102)
T ss_pred CeeECCHHHHHHHh---hcC---CEEEEEECC----CCHH-HHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC
Confidence 58999999999998 332 389999999 8999 899999999999998431 23699999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
++++++++++++|++++|+++ ... ..+.|.++.+++.+||
T Consensus 63 ~~~~~~~~v~~~Pt~~~~~~g--~~~------~~~~G~~~~~~l~~~i 102 (102)
T cd03005 63 RELCSEFQVRGYPTLLLFKDG--EKV------DKYKGTRDLDSLKEFV 102 (102)
T ss_pred hhhHhhcCCCcCCEEEEEeCC--Cee------eEeeCCCCHHHHHhhC
Confidence 999999999999999999864 322 4566778888888875
No 16
>PRK09381 trxA thioredoxin; Provisional
Probab=99.61 E-value=5.5e-15 Score=120.15 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=89.5
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
+|+|+++++++|++.+ .+. +..++|.||++ ||++ |+.+.|.++++|+.+ ++++.|+.+|++
T Consensus 2 ~~~v~~~~~~~~~~~v--~~~--~~~vvv~f~~~----~C~~-C~~~~p~~~~l~~~~----------~~~~~~~~vd~~ 62 (109)
T PRK09381 2 SDKIIHLTDDSFDTDV--LKA--DGAILVDFWAE----WCGP-CKMIAPILDEIADEY----------QGKLTVAKLNID 62 (109)
T ss_pred CCcceeeChhhHHHHH--hcC--CCeEEEEEECC----CCHH-HHHHhHHHHHHHHHh----------CCCcEEEEEECC
Confidence 5789999999999876 233 44799999999 8999 899999999999987 236899999999
Q ss_pred CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
++++++++++++++|++++|+.| ... ....|..+.+.+.+||.+++
T Consensus 63 ~~~~~~~~~~v~~~Pt~~~~~~G--~~~------~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 63 QNPGTAPKYGIRGIPTLLLFKNG--EVA------ATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CChhHHHhCCCCcCCEEEEEeCC--eEE------EEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999999753 332 33455677899999998765
No 17
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.5e-15 Score=127.18 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=90.0
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
.+-.+++++|++.| .+. +-+|+|.|+|+ ||+| |+.+.|..++++..| .+++.|+++|+|++
T Consensus 44 ~~~~~s~~~~~~~V--i~S--~~PVlVdF~A~----WCgP-Ck~l~P~l~~~~~~~----------~g~~k~~kvdtD~~ 104 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKV--INS--DVPVLVDFHAE----WCGP-CKMLGPILEELVSEY----------AGKFKLYKVDTDEH 104 (150)
T ss_pred cccccCHHHHHHHH--Hcc--CCCEEEEEecC----cCcc-HhHhhHHHHHHHHhh----------cCeEEEEEEccccc
Confidence 35667889999998 354 34799999999 8999 899999999999987 36899999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
.++..+|+|+.+||+++|+.| +.. +...|..+++.+.+||++..+
T Consensus 105 ~ela~~Y~I~avPtvlvfknG--e~~------d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 105 PELAEDYEISAVPTVLVFKNG--EKV------DRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred cchHhhcceeeeeEEEEEECC--EEe------eeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999964 332 444667889999999998654
No 18
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.60 E-value=6.2e-15 Score=120.35 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=85.4
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE- 125 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~- 125 (347)
.|++++.++|++++. ...++..++|.|+|+ ||++ |+++.|+|+++|+.+. +.++.|+++|++.
T Consensus 2 ~v~~~~~~~~~~~~~--~~~~~k~vlv~f~a~----wC~~-C~~~~~~~~~la~~~~---------~~~~~~~~vd~d~~ 65 (109)
T cd02993 2 AVVTLSRAEIEALAK--GERRNQSTLVVLYAP----WCPF-CQAMEASYEELAEKLA---------GSNVKVAKFNADGE 65 (109)
T ss_pred cceeccHHHHHHHHh--hhhcCCCEEEEEECC----CCHH-HHHHhHHHHHHHHHhc---------cCCeEEEEEECCcc
Confidence 589999999999972 233556899999999 8999 8999999999999873 2359999999997
Q ss_pred CcchHh-HcCCCCCceEEEEcCCCCCCCCccccccccccc-cCHHHHHHHH
Q 048343 126 SQSSFA-LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMAESMADFV 174 (347)
Q Consensus 126 ~~~lf~-~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a~~l~~fi 174 (347)
+..+++ .++++++||+++|+++. .. ...|++. +++++|.+||
T Consensus 66 ~~~~~~~~~~v~~~Pti~~f~~~~-~~------~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 66 QREFAKEELQLKSFPTILFFPKNS-RQ------PIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred chhhHHhhcCCCcCCEEEEEcCCC-CC------ceeccCCCCCHHHHHhhC
Confidence 567776 59999999999999853 22 2456664 8999999885
No 19
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.58 E-value=1.5e-14 Score=115.63 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=86.7
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE- 125 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~- 125 (347)
+|+++|+++|++.+ +.+ +..++|.|||+ ||++ |+++.|.++.+++.+.. .+++.|+++|.++
T Consensus 1 ~~~~l~~~~~~~~~---~~~-~~~~~v~f~a~----~C~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~ 63 (105)
T cd02998 1 NVVELTDSNFDKVV---GDD-KKDVLVEFYAP----WCGH-CKNLAPEYEKLAAVFAN--------EDDVVIAKVDADEA 63 (105)
T ss_pred CeEEcchhcHHHHh---cCC-CCcEEEEEECC----CCHH-HHhhChHHHHHHHHhCC--------CCCEEEEEEECCCc
Confidence 47899999999987 333 23689999999 8999 89999999999998731 3479999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++++++++++|++++|+++. .. ...+.+.++.+++.+||
T Consensus 64 ~~~~~~~~~i~~~P~~~~~~~~~-~~------~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 64 NKDLAKKYGVSGFPTLKFFPKGS-TE------PVKYEGGRDLEDLVKFV 105 (105)
T ss_pred chhhHHhCCCCCcCEEEEEeCCC-CC------ccccCCccCHHHHHhhC
Confidence 89999999999999999999752 22 24566778899999885
No 20
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7e-15 Score=147.23 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=99.2
Q ss_pred CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343 44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF 123 (347)
Q Consensus 44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~ 123 (347)
.+..|.+||++||++.+ ++ +-.++|.|+|| ||++ |+.+.|||++.|...... +..+..++||.
T Consensus 23 ~~~~Vl~Lt~dnf~~~i---~~--~~~vlVeFYAP----WCgh-ck~LaPey~kAA~~Lke~-------~s~i~LakVDa 85 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI---NG--HEFVLVEFYAP----WCGH-CKALAPEYEKAATELKEE-------GSPVKLAKVDA 85 (493)
T ss_pred cccceEEEecccHHHHh---cc--CceEEEEEEch----hhhh-hhhhCcHHHHHHHHhhcc-------CCCceeEEeec
Confidence 35689999999999998 44 44789999999 8999 899999999999987532 45799999999
Q ss_pred cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
+++.+++.+|+|+++||+.+|..|. . ...|+|+|+++.+++|+.+++|-..
T Consensus 86 t~~~~~~~~y~v~gyPTlkiFrnG~--~------~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 86 TEESDLASKYEVRGYPTLKIFRNGR--S------AQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred chhhhhHhhhcCCCCCeEEEEecCC--c------ceeccCcccHHHHHHHHHhccCCCc
Confidence 9999999999999999999999753 2 2567899999999999999999654
No 21
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.57 E-value=2.1e-14 Score=114.17 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=86.5
Q ss_pred cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343 51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF 130 (347)
Q Consensus 51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf 130 (347)
||+++|++.+ . ++..++|.||++ ||+. |+.++|.++++|+.+.. .+++.|+++|+++++++.
T Consensus 1 l~~~~~~~~~---~--~~~~~~i~f~~~----~C~~-c~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~ 62 (102)
T TIGR01126 1 LTASNFDDIV---L--SNKDVLVEFYAP----WCGH-CKNLAPEYEKLAKELKG--------DPDIVLAKVDATAEKDLA 62 (102)
T ss_pred CchhhHHHHh---c--cCCcEEEEEECC----CCHH-HHhhChHHHHHHHHhcc--------CCceEEEEEEccchHHHH
Confidence 6889999997 3 355799999999 8999 89999999999998732 237999999999999999
Q ss_pred hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
++|+++++|++++|+++. . ...+.|..+.++|.+||.+++
T Consensus 63 ~~~~i~~~P~~~~~~~~~-~-------~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 63 SRFGVSGFPTIKFFPKGK-K-------PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred HhCCCCcCCEEEEecCCC-c-------ceeecCCCCHHHHHHHHHhcC
Confidence 999999999999999752 2 245677788999999998753
No 22
>PTZ00102 disulphide isomerase; Provisional
Probab=99.55 E-value=7e-14 Score=141.35 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=95.3
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.++++|+++|++.+ +..+ .++|.|||+ ||++ |+++.|+|+++|+.+.+. +.++.|+++|+++
T Consensus 32 ~~v~~l~~~~f~~~i---~~~~--~~lv~f~a~----wC~~-Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~ 94 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI---TENE--IVLVKFYAP----WCGH-CKRLAPEYKKAAKMLKEK-------KSEIVLASVDATE 94 (477)
T ss_pred CCcEEcchhhHHHHH---hcCC--cEEEEEECC----CCHH-HHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCC
Confidence 579999999999998 3322 699999998 8999 899999999999987532 3579999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
+++++++++++++|++++|.++ .. ..|.|.++++++.+|+++.++..+
T Consensus 95 ~~~l~~~~~i~~~Pt~~~~~~g--~~-------~~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 95 EMELAQEFGVRGYPTIKFFNKG--NP-------VNYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CHHHHHhcCCCcccEEEEEECC--ce-------EEecCCCCHHHHHHHHHHhhCCCc
Confidence 9999999999999999999864 21 156778999999999999988655
No 23
>PRK10996 thioredoxin 2; Provisional
Probab=99.54 E-value=6.1e-14 Score=119.79 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=87.7
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
.++++++++|++.+ +. +..++|.|||+ ||++ |+++.|.|+++++.+ ++++.|+++|.+++
T Consensus 36 ~~i~~~~~~~~~~i---~~--~k~vvv~F~a~----wC~~-C~~~~~~l~~l~~~~----------~~~v~~~~vd~~~~ 95 (139)
T PRK10996 36 EVINATGETLDKLL---QD--DLPVVIDFWAP----WCGP-CRNFAPIFEDVAAER----------SGKVRFVKVNTEAE 95 (139)
T ss_pred CCEEcCHHHHHHHH---hC--CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------CCCeEEEEEeCCCC
Confidence 48899999999987 33 45799999999 8999 899999999999876 24699999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
++++++++|+++|++++|+. |+.. ....|..+.+++.+|+++.+
T Consensus 96 ~~l~~~~~V~~~Ptlii~~~--G~~v------~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 96 RELSARFRIRSIPTIMIFKN--GQVV------DMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHHHhcCCCccCEEEEEEC--CEEE------EEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999999985 3332 34456678999999998753
No 24
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.54 E-value=4.3e-14 Score=111.00 Aligned_cols=101 Identities=19% Similarity=0.296 Sum_probs=84.6
Q ss_pred EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343 49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS 128 (347)
Q Consensus 49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~ 128 (347)
+++|+++|++.+ ++++ +++|.||++ ||++ |+++.|.++++|+.+.+ .+++.|+.+|++++++
T Consensus 1 ~~l~~~~~~~~i---~~~~--~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~ 62 (101)
T cd02961 1 VELTDDNFDELV---KDSK--DVLVEFYAP----WCGH-CKALAPEYEKLAKELKG--------DGKVVVAKVDCTANND 62 (101)
T ss_pred CcccHHHHHHHH---hCCC--cEEEEEECC----CCHH-HHhhhHHHHHHHHHhcc--------CCceEEEEeeccchHH
Confidence 478999999998 4434 799999998 8999 89999999999998741 3579999999999999
Q ss_pred hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
++++++++++|++++|+++. .. ..++.+..+++++.+|+
T Consensus 63 ~~~~~~i~~~Pt~~~~~~~~-~~------~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 63 LCSEYGVRGYPTIKLFPNGS-KE------PVKYEGPRTLESLVEFI 101 (101)
T ss_pred HHHhCCCCCCCEEEEEcCCC-cc------cccCCCCcCHHHHHhhC
Confidence 99999999999999999752 22 24566677889998874
No 25
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.53 E-value=7e-14 Score=111.67 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=84.7
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
.|.+||+++|++.+ .++ +..++|+|+|+ ||++ |+.+.|+++++|+.+.. ..++.|+++|.+++
T Consensus 1 ~v~~l~~~~f~~~i---~~~-~~~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~ 63 (104)
T cd02995 1 PVKVVVGKNFDEVV---LDS-DKDVLVEFYAP----WCGH-CKALAPIYEELAEKLKG--------DDNVVIAKMDATAN 63 (104)
T ss_pred CeEEEchhhhHHHH---hCC-CCcEEEEEECC----CCHH-HHHHhhHHHHHHHHhcC--------CCCEEEEEEeCcch
Confidence 37899999999987 333 24789999999 8999 89999999999998732 24699999999987
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
++..+++++++|++++|+++. +. ....+.+..+.+++.+||
T Consensus 64 -~~~~~~~~~~~Pt~~~~~~~~-~~-----~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 64 -DVPSEFVVDGFPTILFFPAGD-KS-----NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred -hhhhhccCCCCCEEEEEcCCC-cC-----CceEccCCcCHHHHHhhC
Confidence 578899999999999999752 11 224567788999998885
No 26
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.52 E-value=6.6e-14 Score=111.95 Aligned_cols=101 Identities=22% Similarity=0.388 Sum_probs=84.4
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-- 125 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-- 125 (347)
|+++++++|++.+ +..+ .++|.|||+ ||++ |+.+.|.++++++.+.+ .+.+.|+++|+++
T Consensus 2 ~~~l~~~~~~~~~---~~~~--~~~v~f~a~----wC~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~~ 63 (104)
T cd02997 2 VVHLTDEDFRKFL---KKEK--HVLVMFYAP----WCGH-CKKMKPEFTKAATELKE--------DGKGVLAAVDCTKPE 63 (104)
T ss_pred eEEechHhHHHHH---hhCC--CEEEEEECC----CCHH-HHHhCHHHHHHHHHHhh--------CCceEEEEEECCCCc
Confidence 7899999999998 3333 789999999 8999 89999999999988742 2468999999998
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++++++++++|++++|+++ +. ...+.+..+++++.+|+
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~~g--~~------~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFENG--KF------VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cHHHHHhCCCccccEEEEEeCC--Ce------eEEeCCCCCHHHHHhhC
Confidence 8899999999999999999864 32 24556677899998885
No 27
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.52 E-value=9.2e-14 Score=120.47 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=74.9
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
++.++++++++|++.+ ...++..++|.|+|+ ||++ |+++.|.++++|+++. ++++.|+++|++
T Consensus 27 ~~~v~~l~~~~f~~~l---~~~~~~~vvV~Fya~----wC~~-Ck~l~p~l~~la~~~~---------~~~v~f~~VDvd 89 (152)
T cd02962 27 PEHIKYFTPKTLEEEL---ERDKRVTWLVEFFTT----WSPE-CVNFAPVFAELSLKYN---------NNNLKFGKIDIG 89 (152)
T ss_pred CCccEEcCHHHHHHHH---HhcCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHcc---------cCCeEEEEEECC
Confidence 3579999999999987 333455799999999 8999 8999999999999872 236999999999
Q ss_pred CCcchHhHcCCCC------CceEEEEcCC
Q 048343 125 ESQSSFALFAVNS------LPHIRLVGPD 147 (347)
Q Consensus 125 ~~~~lf~~~~I~s------vP~l~~fpp~ 147 (347)
+++++.++++|++ +||+++|+.|
T Consensus 90 ~~~~la~~~~V~~~~~v~~~PT~ilf~~G 118 (152)
T cd02962 90 RFPNVAEKFRVSTSPLSKQLPTIILFQGG 118 (152)
T ss_pred CCHHHHHHcCceecCCcCCCCEEEEEECC
Confidence 9999999999998 9999999864
No 28
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.52 E-value=6.6e-14 Score=114.73 Aligned_cols=85 Identities=11% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
..+.-++|.+||++.+ +. +..+||+|+|+|. ||++ |++++|.++++|+.| ++++.|+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~---~~--~~~~v~~f~~~~~--~cp~-c~~i~P~leela~e~----------~~~v~f~kVdid 70 (111)
T cd02965 9 RHGWPRVDAATLDDWL---AA--GGDLVLLLAGDPV--RFPE-VLDVAVVLPELLKAF----------PGRFRAAVVGRA 70 (111)
T ss_pred hcCCcccccccHHHHH---hC--CCCEEEEecCCcc--cCcc-hhhhHhHHHHHHHHC----------CCcEEEEEEECC
Confidence 4568899999999987 22 3469999999931 4999 899999999999987 356999999999
Q ss_pred CCcchHhHcCCCCCceEEEEcCC
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
+++++.++|+|+++||+++|+.|
T Consensus 71 ~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 71 DEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred CCHHHHHHcCCCcCCEEEEEECC
Confidence 99999999999999999999964
No 29
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.51 E-value=6.1e-14 Score=115.62 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=66.6
Q ss_pred hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH
Q 048343 53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL 132 (347)
Q Consensus 53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~ 132 (347)
.++|++.+ .+..+..+||.|+|+ ||++ |+.+.|.++++|+.+ .+.+.|+++|+|+++++.++
T Consensus 2 ~~~~~~~i---~~~~~~~vVV~F~A~----WCgp-Ck~m~P~le~la~~~----------~~~v~f~kVDvD~~~~la~~ 63 (114)
T cd02954 2 GWAVDQAI---LSEEEKVVVIRFGRD----WDPV-CMQMDEVLAKIAEDV----------SNFAVIYLVDIDEVPDFNKM 63 (114)
T ss_pred HHHHHHHH---hccCCCEEEEEEECC----CChh-HHHHHHHHHHHHHHc----------cCceEEEEEECCCCHHHHHH
Confidence 46788887 322345799999999 8999 899999999999986 24689999999999999999
Q ss_pred cCCCCCceEEEEcCC
Q 048343 133 FAVNSLPHIRLVGPD 147 (347)
Q Consensus 133 ~~I~svP~l~~fpp~ 147 (347)
++|+++||+++|+.|
T Consensus 64 ~~V~~iPTf~~fk~G 78 (114)
T cd02954 64 YELYDPPTVMFFFRN 78 (114)
T ss_pred cCCCCCCEEEEEECC
Confidence 999999999999974
No 30
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.50 E-value=8.7e-14 Score=112.18 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-CCcchHhHc
Q 048343 55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-ESQSSFALF 133 (347)
Q Consensus 55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-~~~~lf~~~ 133 (347)
++.+++ ...|+..++|.|||+ ||++ |+++.|+|+++|+.+. ++.|+++|.+ +++++.+++
T Consensus 8 ~~~~~~---~~~~g~~vlV~F~a~----WC~~-C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~~~~l~~~~ 68 (100)
T cd02999 8 IALDLM---AFNREDYTAVLFYAS----WCPF-SASFRPHFNALSSMFP-----------QIRHLAIEESSIKPSLLSRY 68 (100)
T ss_pred HHHHHH---HhcCCCEEEEEEECC----CCHH-HHhHhHHHHHHHHHhc-----------cCceEEEECCCCCHHHHHhc
Confidence 455565 344677899999999 8999 8999999999998761 3678899999 788999999
Q ss_pred CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++||+++|+++ .. ..+.|.++.+++.+|+
T Consensus 69 ~V~~~PT~~lf~~g---~~------~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 69 GVVGFPTILLFNST---PR------VRYNGTRTLDSLAAFY 100 (100)
T ss_pred CCeecCEEEEEcCC---ce------eEecCCCCHHHHHhhC
Confidence 99999999999864 22 4567788999999885
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.49 E-value=1.5e-13 Score=108.94 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=78.3
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF 133 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~ 133 (347)
++|++.+ ..+++..++|.|||+ ||++ |+.+.|.++++++++ .+++.|+++|+++++++.++|
T Consensus 1 ~~f~~~i---~~~~~~~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~----------~~~~~~~~vd~~~~~~l~~~~ 62 (96)
T cd02956 1 QNFQQVL---QESTQVPVVVDFWAP----RSPP-SKELLPLLERLAEEY----------QGQFVLAKVNCDAQPQIAQQF 62 (96)
T ss_pred CChHHHH---HhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHh----------CCcEEEEEEeccCCHHHHHHc
Confidence 3678777 334456899999999 8999 899999999999886 235899999999999999999
Q ss_pred CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++|++++|+. |+.. ..+.+..+.++|.+||
T Consensus 63 ~i~~~Pt~~~~~~--g~~~------~~~~g~~~~~~l~~~l 95 (96)
T cd02956 63 GVQALPTVYLFAA--GQPV------DGFQGAQPEEQLRQML 95 (96)
T ss_pred CCCCCCEEEEEeC--CEEe------eeecCCCCHHHHHHHh
Confidence 9999999999984 3332 3455667889998887
No 32
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.49 E-value=1.2e-13 Score=113.32 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=82.8
Q ss_pred EcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch
Q 048343 50 HLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS 129 (347)
Q Consensus 50 ~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l 129 (347)
.++.++|++.+ .....+-.++|.|||+ ||++ |+.+.|+++++++.+. +.++.|+++|+++++++
T Consensus 8 ~~~~~~~~~~~--~~~~~~~~vlV~F~a~----wC~~-C~~~~p~~~~l~~~~~---------~~~v~~~~vd~d~~~~l 71 (111)
T cd02963 8 SLTFSQYENEI--VPKSFKKPYLIKITSD----WCFS-CIHIEPVWKEVIQELE---------PLGVGIATVNAGHERRL 71 (111)
T ss_pred eeeHHHHHHhh--ccccCCCeEEEEEECC----ccHh-HHHhhHHHHHHHHHHH---------hcCceEEEEeccccHHH
Confidence 56888898755 2322345799999999 8999 8999999999999873 23689999999999999
Q ss_pred HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
.++++|+++|++++|+.| +.. ....+..+.+.+.+||++
T Consensus 72 ~~~~~V~~~Pt~~i~~~g--~~~------~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 72 ARKLGAHSVPAIVGIING--QVT------FYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHHcCCccCCEEEEEECC--EEE------EEecCCCCHHHHHHHHhc
Confidence 999999999999999853 321 333556788999999875
No 33
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.47 E-value=5.4e-13 Score=110.11 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.++++++++|++.+ .+++ .+++|.|||+ ||++ |+.+.|.|+++|+.+... .+.+.|+++|++.
T Consensus 1 ~~v~~l~~~~f~~~i---~~~~-~~vvV~f~a~----wC~~-C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~ 64 (114)
T cd02992 1 DPVIVLDAASFNSAL---LGSP-SAWLVEFYAS----WCGH-CRAFAPTWKKLARDLRKW-------RPVVRVAAVDCAD 64 (114)
T ss_pred CCeEECCHHhHHHHH---hcCC-CeEEEEEECC----CCHH-HHHHhHHHHHHHHHHHhc-------CCceEEEEEeccc
Confidence 468999999999998 3333 5799999999 8999 899999999999987421 3469999999763
Q ss_pred --CcchHhHcCCCCCceEEEEcCCC
Q 048343 126 --SQSSFALFAVNSLPHIRLVGPDA 148 (347)
Q Consensus 126 --~~~lf~~~~I~svP~l~~fpp~~ 148 (347)
++++.++++++++|++++|+++.
T Consensus 65 ~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 65 EENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred hhhHHHHHhCCCCCCCEEEEECCCC
Confidence 67899999999999999999864
No 34
>PLN02309 5'-adenylylsulfate reductase
Probab=99.47 E-value=2.5e-13 Score=136.36 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=90.6
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
+++|++|+++||++++. ...++..++|.|+|+ ||++ |+.++|+|+++|+.+. +.++.|+++|++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~--~~~~~k~vlV~FyAp----WC~~-Cq~m~p~~e~LA~~~~---------~~~V~f~kVD~d 407 (457)
T PLN02309 344 SQNVVALSRAGIENLLK--LENRKEPWLVVLYAP----WCPF-CQAMEASYEELAEKLA---------GSGVKVAKFRAD 407 (457)
T ss_pred CCCcEECCHHHHHHHHH--hhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHhc---------cCCeEEEEEECC
Confidence 35799999999999972 344677899999999 8999 8999999999999873 236999999999
Q ss_pred -CCcchHh-HcCCCCCceEEEEcCCCCCCCCccccccccc-cccCHHHHHHHHHhh
Q 048343 125 -ESQSSFA-LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD-FARMAESMADFVQSR 177 (347)
Q Consensus 125 -~~~~lf~-~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~-~~~~a~~l~~fi~~~ 177 (347)
+++++.+ +++|+++||+++|+++... ...|. +.++++.|.+||++.
T Consensus 408 ~~~~~la~~~~~I~~~PTil~f~~g~~~-------~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 408 GDQKEFAKQELQLGSFPTILLFPKNSSR-------PIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CcchHHHHhhCCCceeeEEEEEeCCCCC-------eeecCCCCcCHHHHHHHHHHh
Confidence 7778886 6999999999999986322 13455 469999999999864
No 35
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.47 E-value=3.5e-13 Score=135.47 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=88.1
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
+++|++||++||++.+ ....++..++|.|||+ ||++ |+.+.|+|+++|+.|. +..+.|+++|+|
T Consensus 350 ~~~Vv~L~~~nf~~~v--~~~~~~k~VLV~FyAp----WC~~-Ck~m~P~~eelA~~~~---------~~~v~~~kVdvD 413 (463)
T TIGR00424 350 SNNVVSLSRPGIENLL--KLEERKEAWLVVLYAP----WCPF-CQAMEASYLELAEKLA---------GSGVKVAKFRAD 413 (463)
T ss_pred CCCeEECCHHHHHHHH--hhhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHhc---------cCCcEEEEEECC
Confidence 3579999999999998 2244566899999999 8999 8999999999999873 124899999999
Q ss_pred CCc-chH-hHcCCCCCceEEEEcCCCCCCCCccccccccc-cccCHHHHHHHHHh
Q 048343 125 ESQ-SSF-ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD-FARMAESMADFVQS 176 (347)
Q Consensus 125 ~~~-~lf-~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~-~~~~a~~l~~fi~~ 176 (347)
+++ ++. ++++|+++||+++|+++... ...|. +.+++++|.+||+.
T Consensus 414 ~~~~~~~~~~~~I~~~PTii~Fk~g~~~-------~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 414 GDQKEFAKQELQLGSFPTILFFPKHSSR-------PIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCccHHHHHHcCCCccceEEEEECCCCC-------ceeCCCCCCCHHHHHHHHHh
Confidence 764 444 68999999999999976311 13455 46999999999985
No 36
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.44 E-value=4.3e-13 Score=110.21 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=72.1
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.+.++++++|++.+ .+.+++..++|.|||+ ||++ |+.+.|.++++|+.+ .++.|+++|.++
T Consensus 4 g~v~~i~~~~f~~~i--~~~~~~~~vvv~F~a~----~c~~-C~~l~~~l~~la~~~-----------~~v~f~~vd~~~ 65 (113)
T cd02957 4 GEVREISSKEFLEEV--TKASKGTRVVVHFYEP----GFPR-CKILDSHLEELAAKY-----------PETKFVKINAEK 65 (113)
T ss_pred ceEEEEcHHHHHHHH--HccCCCCEEEEEEeCC----CCCc-HHHHHHHHHHHHHHC-----------CCcEEEEEEchh
Confidence 348899999999988 2333346899999999 8999 899999999999876 147899999999
Q ss_pred CcchHhHcCCCCCceEEEEcCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~ 147 (347)
+ ++.++++|+++|++++|+.|
T Consensus 66 ~-~l~~~~~i~~~Pt~~~f~~G 86 (113)
T cd02957 66 A-FLVNYLDIKVLPTLLVYKNG 86 (113)
T ss_pred h-HHHHhcCCCcCCEEEEEECC
Confidence 9 99999999999999999964
No 37
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.42 E-value=8.5e-13 Score=132.19 Aligned_cols=113 Identities=14% Similarity=0.201 Sum_probs=94.5
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.|+++|+++|++.+ +. +..++|.|||+ ||++ |+++.|+++++|+.+.+. ..++.|+++|+++
T Consensus 1 ~~v~~l~~~~~~~~i---~~--~~~~~v~f~a~----wC~~-c~~~~~~~~~~a~~~~~~-------~~~v~~~~vd~~~ 63 (462)
T TIGR01130 1 EDVLVLTKDNFDDFI---KS--HEFVLVEFYAP----WCGH-CKSLAPEYEKAADELKKK-------GPPIKLAKVDATE 63 (462)
T ss_pred CCceECCHHHHHHHH---hc--CCCEEEEEECC----CCHH-HHhhhHHHHHHHHHHhhc-------CCceEEEEEECCC
Confidence 368999999999998 33 22689999999 8999 899999999999988542 3479999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
+++++++++|+++|++++|++|. . ....+.|.++++++.+|+.+.++..+
T Consensus 64 ~~~l~~~~~i~~~Pt~~~~~~g~--~-----~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 64 EKDLAQKYGVSGYPTLKIFRNGE--D-----SVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred cHHHHHhCCCccccEEEEEeCCc--c-----ceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999998652 2 02455677899999999999988554
No 38
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.41 E-value=1.7e-12 Score=115.18 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=90.1
Q ss_pred hHHHHHHHHHh-c-CCCCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC
Q 048343 32 DLVSELLNLQS-Q-SEAGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD 108 (347)
Q Consensus 32 ~~~~~L~~l~~-~-s~~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~ 108 (347)
+|.++|.+.+. + .-..++++++ ++|.+.+. +.+++..+||.|||+ ||++ |+.+.|.++.+|+.|
T Consensus 46 ~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~--~~~~~~~VVV~Fya~----wc~~-Ck~m~~~l~~LA~~~------ 112 (175)
T cd02987 46 QRMQEMHAKLPFGRRFGKVYELDSGEQFLDAID--KEGKDTTVVVHIYEP----GIPG-CAALNSSLLCLAAEY------ 112 (175)
T ss_pred HHHHHHHHhccccCCCCeEEEcCCHHHHHHHHH--hcCCCcEEEEEEECC----CCch-HHHHHHHHHHHHHHC------
Confidence 44455544321 1 1235999999 99999983 333445799999999 8999 899999999999876
Q ss_pred CCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccc-cccccCHHHHHHHHHh
Q 048343 109 NPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQ-GDFARMAESMADFVQS 176 (347)
Q Consensus 109 ~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~-~~~~~~a~~l~~fi~~ 176 (347)
..+.|+++|.++. ++.++|+++++||+++|+.| +....-..+.. .....+++++..++.+
T Consensus 113 -----~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G--~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 113 -----PAVKFCKIRASAT-GASDEFDTDALPALLVYKGG--ELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred -----CCeEEEEEeccch-hhHHhCCCCCCCEEEEEECC--EEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 2589999999988 89999999999999999964 43200001111 1124678888888765
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.41 E-value=1.9e-12 Score=102.32 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=81.3
Q ss_pred cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343 51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF 130 (347)
Q Consensus 51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf 130 (347)
+|+++|++.+ .+. +-.+++.|+++ ||++ |+.+.|+++++++++ ++++.|+++|.++++++.
T Consensus 1 i~~~~~~~~~---~~~-~~~vvi~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~vd~~~~~~~~ 61 (101)
T TIGR01068 1 LTDANFDETI---ASS-DKPVLVDFWAP----WCGP-CKMIAPILEELAKEY----------EGKVKFVKLNVDENPDIA 61 (101)
T ss_pred CCHHHHHHHH---hhc-CCcEEEEEECC----CCHH-HHHhCHHHHHHHHHh----------cCCeEEEEEECCCCHHHH
Confidence 4678899887 332 33689999998 8999 899999999999876 236999999999999999
Q ss_pred hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
++|+++++|++++|+.+ +.. ..+.+..+.+++.+|+++.
T Consensus 62 ~~~~v~~~P~~~~~~~g--~~~------~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 62 AKYGIRSIPTLLLFKNG--KEV------DRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHcCCCcCCEEEEEeCC--cEe------eeecCCCCHHHHHHHHHhh
Confidence 99999999999999753 321 3334556789999999875
No 40
>PHA02278 thioredoxin-like protein
Probab=99.40 E-value=1.3e-12 Score=106.01 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=71.6
Q ss_pred hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cc
Q 048343 53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QS 128 (347)
Q Consensus 53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~ 128 (347)
-++|++.+ +. +-.++|+|||+ ||++ |+.+.|.++++|+++. .++.|+++|+|++ ++
T Consensus 4 ~~~~~~~i---~~--~~~vvV~F~A~----WCgp-Ck~m~p~l~~l~~~~~----------~~~~~~~vdvd~~~~d~~~ 63 (103)
T PHA02278 4 LVDLNTAI---RQ--KKDVIVMITQD----NCGK-CEILKSVIPMFQESGD----------IKKPILTLNLDAEDVDREK 63 (103)
T ss_pred HHHHHHHH---hC--CCcEEEEEECC----CCHH-HHhHHHHHHHHHhhhc----------CCceEEEEECCccccccHH
Confidence 36788887 32 33699999999 8999 8999999999997641 2466899999975 58
Q ss_pred hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHH
Q 048343 129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADF 173 (347)
Q Consensus 129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~f 173 (347)
+.++++|+++||+++|+.| +.. .+..|..+.+++.++
T Consensus 64 l~~~~~I~~iPT~i~fk~G--~~v------~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 64 AVKLFDIMSTPVLIGYKDG--QLV------KKYEDQVTPMQLQEL 100 (103)
T ss_pred HHHHCCCccccEEEEEECC--EEE------EEEeCCCCHHHHHhh
Confidence 9999999999999999964 332 333455667777654
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.39 E-value=2.6e-12 Score=103.70 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=80.4
Q ss_pred EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343 49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS 128 (347)
Q Consensus 49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~ 128 (347)
.+++ ++|++.. + +..++|.|+|+ ||++ |+.+.|+++++|+.+... +.++.++++|+++.++
T Consensus 3 ~~~~-~~~~~~~---~---~~~vlv~f~a~----wC~~-C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~~~ 63 (104)
T cd03000 3 LDLD-DSFKDVR---K---EDIWLVDFYAP----WCGH-CKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAYSS 63 (104)
T ss_pred eech-hhhhhhc---c---CCeEEEEEECC----CCHH-HHhhChHHHHHHHHHHhc-------CCcEEEEEEECccCHh
Confidence 3444 6788853 2 22689999999 8999 899999999999987421 2469999999999999
Q ss_pred hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
+.++++++++|++++|..+ .. ..+.|..+.+.+.+|+++.
T Consensus 64 ~~~~~~I~~~Pt~~l~~~~--~~-------~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 64 IASEFGVRGYPTIKLLKGD--LA-------YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred HHhhcCCccccEEEEEcCC--Cc-------eeecCCCCHHHHHHHHHhh
Confidence 9999999999999999632 21 2356678899999999763
No 42
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.38 E-value=2.2e-12 Score=104.36 Aligned_cols=96 Identities=8% Similarity=0.060 Sum_probs=74.6
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---c
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---S 128 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~ 128 (347)
+.++|++.+ ...++-.++|.|||+ ||++ |+.+.|.++++|+++ +++.|+++|.|+++ +
T Consensus 2 ~~~~~~~~i---~~~~~k~vvv~F~a~----wC~~-C~~~~p~l~~la~~~-----------~~v~~~~vd~d~~~~~~~ 62 (103)
T cd02985 2 SVEELDEAL---KKAKGRLVVLEFALK----HSGP-SVKIYPTMVKLSRTC-----------NDVVFLLVNGDENDSTME 62 (103)
T ss_pred CHHHHHHHH---HHcCCCEEEEEEECC----CCHh-HHHHhHHHHHHHHHC-----------CCCEEEEEECCCChHHHH
Confidence 467888887 333456899999999 8999 899999999999886 24889999999874 8
Q ss_pred hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343 129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
+.++++|+++||+++|+.| +.. .++.| ...+++.+-+.
T Consensus 63 l~~~~~V~~~Pt~~~~~~G--~~v------~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 63 LCRREKIIEVPHFLFYKDG--EKI------HEEEG-IGPDELIGDVL 100 (103)
T ss_pred HHHHcCCCcCCEEEEEeCC--eEE------EEEeC-CCHHHHHHHHH
Confidence 9999999999999999753 332 33333 44566665554
No 43
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.38 E-value=3.5e-12 Score=102.89 Aligned_cols=97 Identities=9% Similarity=-0.013 Sum_probs=76.7
Q ss_pred cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343 51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF 130 (347)
Q Consensus 51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf 130 (347)
-|.++|++++ +. +..++|.|||+ ||++ |+.+.|+++++++.+. ++.+.|+++|.| ++++.
T Consensus 5 ~~~~~~~~~i---~~--~~~vvv~F~a~----wC~~-Ck~~~p~l~~~~~~~~---------~~~~~~~~vd~d-~~~~~ 64 (102)
T cd02948 5 NNQEEWEELL---SN--KGLTVVDVYQE----WCGP-CKAVVSLFKKIKNELG---------DDLLHFATAEAD-TIDTL 64 (102)
T ss_pred cCHHHHHHHH---cc--CCeEEEEEECC----cCHh-HHHHhHHHHHHHHHcC---------CCcEEEEEEeCC-CHHHH
Confidence 3778999987 33 33699999999 8999 8999999999998872 235889999999 77899
Q ss_pred hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
++|+++++|++++|+.| +.. .+..| .+++.+.++|.+
T Consensus 65 ~~~~v~~~Pt~~~~~~g--~~~------~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 65 KRYRGKCEPTFLFYKNG--ELV------AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred HHcCCCcCcEEEEEECC--EEE------EEEec-CChHHHHHHHhh
Confidence 99999999999999853 322 22233 467888888764
No 44
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.36 E-value=3.4e-12 Score=105.21 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=80.8
Q ss_pred CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
.+.++++ ++|++.+ +.+ -.++|.|+++ ||++ |+.+.|.++++|+.+ .++.|+++|.++
T Consensus 5 ~v~~i~~~~~~~~~i---~~~--~~vvV~f~a~----~c~~-C~~~~p~l~~la~~~-----------~~i~f~~Vd~~~ 63 (113)
T cd02989 5 KYREVSDEKEFFEIV---KSS--ERVVCHFYHP----EFFR-CKIMDKHLEILAKKH-----------LETKFIKVNAEK 63 (113)
T ss_pred CeEEeCCHHHHHHHH---hCC--CcEEEEEECC----CCcc-HHHHHHHHHHHHHHc-----------CCCEEEEEEccc
Confidence 4888888 8999998 333 3699999999 8999 899999999999875 147999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccc-cccc-cccCHHHHHHHH
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQM-EQGD-FARMAESMADFV 174 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~-~~~~-~~~~a~~l~~fi 174 (347)
++++.++++++++|++++|..| +..+..... +... ...+++++.+|+
T Consensus 64 ~~~l~~~~~v~~vPt~l~fk~G--~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 64 APFLVEKLNIKVLPTVILFKNG--KTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CHHHHHHCCCccCCEEEEEECC--EEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999999999999999999964 332010011 1111 235688887776
No 45
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.35 E-value=5.9e-12 Score=107.67 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=82.3
Q ss_pred hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH
Q 048343 53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL 132 (347)
Q Consensus 53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~ 132 (347)
.++|++.+ ....+-.+||.|+|+ ||++ |+.+.|.++++|+.+ ++.++|+++|+|+++++.++
T Consensus 11 ~~e~d~~I---~~~~~~lVVvdF~A~----WCgp-Ck~m~p~l~~la~~~----------~~~~~~~kVDVDe~~dla~~ 72 (142)
T PLN00410 11 GWAVDQAI---LAEEERLVVIRFGHD----WDET-CMQMDEVLASVAETI----------KNFAVIYLVDITEVPDFNTM 72 (142)
T ss_pred HHHHHHHH---HhcCCCEEEEEEECC----CChh-HHHHHHHHHHHHHHc----------CCceEEEEEECCCCHHHHHH
Confidence 46788877 222355799999999 9999 899999999999986 34699999999999999999
Q ss_pred cCCCCCceEE-EEcCCCCCCCCcccccccccc--------ccCHHHHHHHHHhh-----cCCCCCcccCCCCchh
Q 048343 133 FAVNSLPHIR-LVGPDAKSLKDDSVQMEQGDF--------ARMAESMADFVQSR-----TKLTVGPIHHPPLLSK 193 (347)
Q Consensus 133 ~~I~svP~l~-~fpp~~g~~~~~~~~~~~~~~--------~~~a~~l~~fi~~~-----t~~~i~~i~~p~~~~~ 193 (347)
|+|++.|+++ +|+.|+. .. +...| ..++++|.+-+... -|.- -+..|.||+.
T Consensus 73 y~I~~~~t~~~ffk~g~~-~v------d~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~--~~~~~~~~~~ 138 (142)
T PLN00410 73 YELYDPCTVMFFFRNKHI-MI------DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRG--LVISPKDYST 138 (142)
T ss_pred cCccCCCcEEEEEECCeE-EE------EEecccccccccccCCHHHHHHHHHHHHHHHhcCCe--EEECCCcccc
Confidence 9999887666 8886421 21 22222 35667776665432 2332 3556777754
No 46
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.4e-12 Score=102.95 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=67.6
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
+-.+||+|||+ ||++ |+.++|.|+++|..| .+ +.|.++|+|+.+++.++++++++||+.+++.|
T Consensus 21 ~kliVvdF~a~----wCgP-Ck~i~P~~~~La~~y----------~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 21 DKLVVVDFYAT----WCGP-CKAIAPKFEKLAEKY----------PD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred CCeEEEEEECC----CCcc-hhhhhhHHHHHHHHC----------CC-CEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence 45799999999 8999 899999999999987 23 99999999999999999999999999999864
Q ss_pred CCCCCCccccccccccccCHHHHHHHHHh
Q 048343 148 AKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
+.. ....| -..+.+.+.+++
T Consensus 85 --~~~------~~~vG-a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 85 --EEV------DEVVG-ANKAELEKKIAK 104 (106)
T ss_pred --EEE------EEEec-CCHHHHHHHHHh
Confidence 322 22233 344566666554
No 47
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.31 E-value=1.3e-11 Score=111.10 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhcCCC-CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCC
Q 048343 32 DLVSELLNLQSQSEA-GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNP 110 (347)
Q Consensus 32 ~~~~~L~~l~~~s~~-~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~ 110 (347)
+|.++|.+.+.++.- .|.++++++|.+.+ ++.+++..+||.||++ ||++ |+.+.|.++++|..|
T Consensus 67 kRl~el~~~~~~~~~G~v~eis~~~f~~eV--~~as~~~~VVV~Fya~----wc~~-C~~m~~~l~~LA~k~-------- 131 (192)
T cd02988 67 KRLAEMKALAEKSKFGEVYEISKPDYVREV--TEASKDTWVVVHLYKD----GIPL-CRLLNQHLSELARKF-------- 131 (192)
T ss_pred HHHHHHHHhhhhCCCCeEEEeCHHHHHHHH--HhcCCCCEEEEEEECC----CCch-HHHHHHHHHHHHHHC--------
Confidence 445555554433333 49999999999876 2444556899999999 8999 899999999999986
Q ss_pred CCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHHh
Q 048343 111 SSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQS 176 (347)
Q Consensus 111 ~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~~ 176 (347)
..+.|+++|+++. ...|+++++||+++|..| +.......+....+ ..+.+++..+|.+
T Consensus 132 ---~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G--~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 132 ---PDTKFVKIISTQC---IPNYPDKNLPTILVYRNG--DIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred ---CCCEEEEEEhHHh---HhhCCCCCCCEEEEEECC--EEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 1489999999864 578999999999999964 33200001111111 4678888777764
No 48
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.31 E-value=1.1e-11 Score=99.98 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=74.2
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccC----C
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKE----S 126 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----~ 126 (347)
++|++.. +. +..++|.|+|+ ||++ |+++.|.+ +++++.+. +++.|+.+|.++ .
T Consensus 2 ~~~~~~~---~~--~k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~~----------~~~~~~~vd~~~~~~~~ 61 (104)
T cd02953 2 AALAQAL---AQ--GKPVFVDFTAD----WCVT-CKVNEKVVFSDPEVQAALK----------KDVVLLRADWTKNDPEI 61 (104)
T ss_pred HHHHHHH---Hc--CCeEEEEEEcc----hhHH-HHHHHHHhcCCHHHHHHHh----------CCeEEEEEecCCCCHHH
Confidence 4667765 22 34799999999 8999 89999998 67877662 269999999987 4
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++.++++++++|++++|.+++|+.. .++.|..+.+++.++|
T Consensus 62 ~~~~~~~~i~~~Pti~~~~~~~g~~~------~~~~G~~~~~~l~~~l 103 (104)
T cd02953 62 TALLKRFGVFGPPTYLFYGPGGEPEP------LRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCCC------cccccccCHHHHHHHh
Confidence 68999999999999999987334432 4455667888888876
No 49
>PTZ00102 disulphide isomerase; Provisional
Probab=99.31 E-value=1.1e-11 Score=125.32 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=93.3
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.|.+++.++|++.+ .+. +..++|.|||+ ||++ |+.++|+|+++|+.+.. .+.+.|+++|.++
T Consensus 357 ~~v~~l~~~~f~~~v--~~~--~k~vlv~f~a~----wC~~-C~~~~p~~~~~a~~~~~--------~~~v~~~~id~~~ 419 (477)
T PTZ00102 357 GPVKVVVGNTFEEIV--FKS--DKDVLLEIYAP----WCGH-CKNLEPVYNELGEKYKD--------NDSIIVAKMNGTA 419 (477)
T ss_pred CCeEEecccchHHHH--hcC--CCCEEEEEECC----CCHH-HHHHHHHHHHHHHHhcc--------CCcEEEEEEECCC
Confidence 358999999999987 233 44799999999 8999 89999999999988732 3469999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL 180 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~ 180 (347)
+....++++++++||+++|+++ ++. ...+.|.++.+++.+||+++...
T Consensus 420 ~~~~~~~~~v~~~Pt~~~~~~~-~~~------~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 420 NETPLEEFSWSAFPTILFVKAG-ERT------PIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CccchhcCCCcccCeEEEEECC-Ccc------eeEecCcCCHHHHHHHHHHcCCC
Confidence 9999999999999999999975 222 23567789999999999998764
No 50
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.8e-12 Score=113.49 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=82.8
Q ss_pred CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+||.+++ ++|++-+. ..| -..++|+|||. ||+| |+...|.|+.+|+.|- +..|.+||+|+
T Consensus 2 ~Vi~v~~d~df~~~ls-~ag--~k~v~Vdfta~----wCGP-Ck~IaP~Fs~lankYp-----------~aVFlkVdVd~ 62 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELS-AAG--GKLVVVDFTAS----WCGP-CKRIAPIFSDLANKYP-----------GAVFLKVDVDE 62 (288)
T ss_pred CeEEecCcHHHHHhhh-ccC--ceEEEEEEEec----ccch-HHhhhhHHHHhhhhCc-----------ccEEEEEeHHH
Confidence 4777776 48888773 233 34899999999 9999 8999999999999882 56999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT 181 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~ 181 (347)
.++++..+||+..||+++|..+ ... +++.| -++..|.+-|+++.+..
T Consensus 63 c~~taa~~gV~amPTFiff~ng--~ki------d~~qG-Ad~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 63 CRGTAATNGVNAMPTFIFFRNG--VKI------DQIQG-ADASGLEEKVAKYASTS 109 (288)
T ss_pred hhchhhhcCcccCceEEEEecC--eEe------eeecC-CCHHHHHHHHHHHhccC
Confidence 9999999999999999999864 322 33333 35666666666665543
No 51
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.28 E-value=1.1e-11 Score=101.72 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=65.1
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF 133 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~ 133 (347)
+.|++.+. +. .+..+||.|+|+ ||++ |+.+.|.++++|+.+. +.+.|++||+|+.+++.++|
T Consensus 3 ~~~d~~i~--~~-~~klVVVdF~a~----WC~p-Ck~mdp~l~ela~~~~----------~~~~f~kVDVDev~dva~~y 64 (114)
T cd02986 3 KEVDQAIK--ST-AEKVLVLRFGRD----EDAV-CLQLDDILSKTSHDLS----------KMASIYLVDVDKVPVYTQYF 64 (114)
T ss_pred HHHHHHHH--hc-CCCEEEEEEeCC----CChh-HHHHHHHHHHHHHHcc----------CceEEEEEeccccHHHHHhc
Confidence 45677662 22 356899999999 8999 8999999999999872 24999999999999999999
Q ss_pred CCCCCceEEEEcCC
Q 048343 134 AVNSLPHIRLVGPD 147 (347)
Q Consensus 134 ~I~svP~l~~fpp~ 147 (347)
+|++.|+.++|..|
T Consensus 65 ~I~amPtfvffkng 78 (114)
T cd02986 65 DISYIPSTIFFFNG 78 (114)
T ss_pred CceeCcEEEEEECC
Confidence 99999999999964
No 52
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-11 Score=123.89 Aligned_cols=109 Identities=11% Similarity=0.120 Sum_probs=89.4
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.|..+-.+||++++ .+. ...++|.|+|| ||+| |++++|.|+++|+.|.. .++|.+|++|.+.
T Consensus 366 ~pVkvvVgknfd~iv--~de--~KdVLvEfyAP----WCgH-Ck~laP~~eeLAe~~~~--------~~~vviAKmDaTa 428 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIV--LDE--GKDVLVEFYAP----WCGH-CKALAPIYEELAEKYKD--------DENVVIAKMDATA 428 (493)
T ss_pred CCeEEEeecCHHHHh--hcc--ccceEEEEcCc----ccch-hhhhhhHHHHHHHHhcC--------CCCcEEEEecccc
Confidence 359999999999998 343 34699999999 8999 89999999999999843 3579999999998
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
|.- ..++++++|||++||.+. + .++..|+++|+.+++..|+.+.-+
T Consensus 429 Nd~--~~~~~~~fPTI~~~pag~-k-----~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 429 NDV--PSLKVDGFPTILFFPAGH-K-----SNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ccC--ccccccccceEEEecCCC-C-----CCCcccCCCcchHHHHhhhccCCC
Confidence 752 236778899999999863 2 234667889999999999987654
No 53
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.24 E-value=4.3e-11 Score=94.67 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=74.6
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA 131 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~ 131 (347)
+.++|++.+. +.+ +..++|.|+|+ ||++ |+.+.|.++++++.+ .+++.|+++|.++.+++.+
T Consensus 1 s~~~~~~~~~--~~~-~~~v~v~f~~~----~C~~-C~~~~~~l~~l~~~~----------~~~i~~~~vd~~~~~~~~~ 62 (97)
T cd02984 1 SEEEFEELLK--SDA-SKLLVLHFWAP----WAEP-CKQMNQVFEELAKEA----------FPSVLFLSIEAEELPEISE 62 (97)
T ss_pred CHHHHHHHHh--hCC-CCEEEEEEECC----CCHH-HHHHhHHHHHHHHHh----------CCceEEEEEccccCHHHHH
Confidence 3578888872 222 45899999999 8999 899999999999876 1379999999999999999
Q ss_pred HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+|+++++|++++|+. |+.. .... +...++|.+.|
T Consensus 63 ~~~i~~~Pt~~~~~~--g~~~------~~~~-g~~~~~l~~~~ 96 (97)
T cd02984 63 KFEITAVPTFVFFRN--GTIV------DRVS-GADPKELAKKV 96 (97)
T ss_pred hcCCccccEEEEEEC--CEEE------EEEe-CCCHHHHHHhh
Confidence 999999999999975 3321 1112 34567776654
No 54
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.20 E-value=7.4e-11 Score=97.19 Aligned_cols=90 Identities=10% Similarity=0.128 Sum_probs=71.9
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
+..++|+|+|+ ||++ |+.++|.++++|..+ +++.|.++|.++++++.++|+++++|++++|..+
T Consensus 22 ~~~vvv~f~a~----wC~~-C~~~~~~l~~la~~~-----------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 22 PVDLVVFSSKE----GCQY-CEVTKQLLEELSELS-----------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred CeEEEEEeCCC----CCCC-hHHHHHHHHHHHHhc-----------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence 44688999999 8999 899999999998653 3588999999999999999999999999999864
Q ss_pred CCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 148 AKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
+.. ... .+.|..+.+++.+||.....
T Consensus 86 -~~~----~~~-~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 86 -GKD----GGI-RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred -eec----ceE-EEEecCchHHHHHHHHHHHh
Confidence 221 111 23455667889999887654
No 55
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.19 E-value=1.6e-10 Score=99.10 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=75.4
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--cchHh
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--QSSFA 131 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--~~lf~ 131 (347)
..|++.+ .. +-.++|.|||+ ||++ |+.+.|.++++++.|. +++.|+.+|+++. +++.+
T Consensus 11 ~~~~~a~---~~--gk~vvV~F~A~----WC~~-C~~~~p~l~~l~~~~~----------~~~~~v~v~vd~~~~~~~~~ 70 (142)
T cd02950 11 TPPEVAL---SN--GKPTLVEFYAD----WCTV-CQEMAPDVAKLKQKYG----------DQVNFVMLNVDNPKWLPEID 70 (142)
T ss_pred CCHHHHH---hC--CCEEEEEEECC----cCHH-HHHhHHHHHHHHHHhc----------cCeeEEEEEcCCcccHHHHH
Confidence 3456554 22 33699999999 8999 8999999999998872 3467788888764 48899
Q ss_pred HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
+|+++++|++++|.++ |+.. ....|..+.+++.++|.+...
T Consensus 71 ~~~V~~iPt~v~~~~~-G~~v------~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 71 RYRVDGIPHFVFLDRE-GNEE------GQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred HcCCCCCCEEEEECCC-CCEE------EEEeCCCCHHHHHHHHHHHHc
Confidence 9999999999999653 4432 334456678889999988765
No 56
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.16 E-value=1.7e-10 Score=92.27 Aligned_cols=89 Identities=25% Similarity=0.400 Sum_probs=72.7
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCC--CCceEEEEc
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVN--SLPHIRLVG 145 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~--svP~l~~fp 145 (347)
+..++++|+++ ||++ |+++.|.++++|+.| ++++.|+.+|.++++++.+++|++ ++|++.++.
T Consensus 12 ~~~~~~~f~~~----~~~~-~~~~~~~~~~vA~~~----------~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~ 76 (103)
T cd02982 12 GKPLLVLFYNK----DDSE-SEELRERFKEVAKKF----------KGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIIN 76 (103)
T ss_pred CCCEEEEEEcC----Chhh-HHHHHHHHHHHHHHh----------CCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEe
Confidence 44689999998 8999 899999999999998 257999999999999999999999 999999999
Q ss_pred CCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.++|.. +....+..+.+++.+|+++.
T Consensus 77 ~~~~~k------~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 77 LSDGKK------YLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cccccc------cCCCccccCHHHHHHHHHhh
Confidence 742221 11112235899999999864
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.15 E-value=1.3e-10 Score=92.60 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=70.4
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
+-.++++|+++ ||+. |+.+.|.++.+++.+ ++++.|.++|.++.+++.++++++++|++++|++
T Consensus 13 ~~~vlv~f~a~----~C~~-C~~~~~~l~~l~~~~----------~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~- 76 (97)
T cd02949 13 DRLILVLYTSP----TCGP-CRTLKPILNKVIDEF----------DGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKD- 76 (97)
T ss_pred CCeEEEEEECC----CChh-HHHHHHHHHHHHHHh----------CCceEEEEEECCCCHHHHHHCCCeeccEEEEEEC-
Confidence 34789999998 8999 899999999999876 2369999999999999999999999999999975
Q ss_pred CCCCCCccccccccccccCHHHHHHHHH
Q 048343 148 AKSLKDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
|+.. ....+..+.+++.+|++
T Consensus 77 -g~~v------~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 77 -KELV------KEISGVKMKSEYREFIE 97 (97)
T ss_pred -CeEE------EEEeCCccHHHHHHhhC
Confidence 3332 34455677888888763
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.14 E-value=2.6e-10 Score=114.26 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=89.8
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+.|.+|+.++|++.+ .+. +..++|+|+|+ ||++ |+++.|.++++|+.+... .+++.|+++|+++
T Consensus 346 ~~v~~l~~~~f~~~v--~~~--~~~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~ 409 (462)
T TIGR01130 346 GPVKVLVGKNFDEIV--LDE--TKDVLVEFYAP----WCGH-CKNLAPIYEELAEKYKDA-------ESDVVIAKMDATA 409 (462)
T ss_pred CccEEeeCcCHHHHh--ccC--CCeEEEEEECC----CCHh-HHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCC
Confidence 468899999999997 233 45799999999 8999 899999999999987421 2379999999997
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
+. +.. ++++++|++++|+++. .. ....+.+.++.++|.+||.+....++
T Consensus 410 n~-~~~-~~i~~~Pt~~~~~~~~-~~-----~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 410 ND-VPP-FEVEGFPTIKFVPAGK-KS-----EPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred Cc-cCC-CCccccCEEEEEeCCC-Cc-----CceEecCcCCHHHHHHHHHhcCCCCC
Confidence 65 333 9999999999999753 21 12345677899999999999887654
No 59
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.11 E-value=1.9e-10 Score=107.80 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=93.7
Q ss_pred cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343 51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF 130 (347)
Q Consensus 51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf 130 (347)
++.+|.+.++ +. +..++|-|||. ||+- .+.++|.|++.|..+.+.+|+ +++.+++||++.+..+.
T Consensus 1 lt~~N~~~il---~s--~elvfv~FyAd----WCrF-Sq~L~piF~EAa~~~~~e~P~-----~kvvwg~VDcd~e~~ia 65 (375)
T KOG0912|consen 1 LTSENIDSIL---DS--NELVFVNFYAD----WCRF-SQMLKPIFEEAAAKFKQEFPE-----GKVVWGKVDCDKEDDIA 65 (375)
T ss_pred CccccHHHhh---cc--ceEEeeeeehh----hchH-HHHHhHHHHHHHHHHHHhCCC-----cceEEEEcccchhhHHh
Confidence 4668888887 33 44788999999 8999 899999999999999888863 58999999999999999
Q ss_pred hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
.+|.|+.+||+.+|..| ... -..|.+.|+++.+.+||++.....+
T Consensus 66 ~ky~I~KyPTlKvfrnG--~~~-----~rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 66 DKYHINKYPTLKVFRNG--EMM-----KREYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred hhhccccCceeeeeecc--chh-----hhhhccchhHHHHHHHHHHHhccHH
Confidence 99999999999999964 331 0356788999999999999988644
No 60
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.11 E-value=1.5e-10 Score=108.35 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=88.5
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
..|-.|++ .|++.- .+--.+|.|+|| ||.+ |+.++|.|.+|.-+... .+.++..+++|.+.
T Consensus 28 t~VeDLdd-kFkdnk------dddiW~VdFYAP----WC~H-CKkLePiWdeVG~elkd-------ig~PikVGKlDaT~ 88 (468)
T KOG4277|consen 28 TAVEDLDD-KFKDNK------DDDIWFVDFYAP----WCAH-CKKLEPIWDEVGHELKD-------IGLPIKVGKLDATR 88 (468)
T ss_pred hhhhhhhH-Hhhhcc------cCCeEEEEeech----hhhh-cccccchhHHhCcchhh-------cCCceeeccccccc
Confidence 34555544 455441 234678999999 8999 89999999999877632 24579999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPL 190 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~ 190 (347)
-+.++.+|||+++||+.+|+. .+. ..|.|+|+.+++.+|..+-.+ +|.+|.|
T Consensus 89 f~aiAnefgiqGYPTIk~~kg---d~a------~dYRG~R~Kd~iieFAhR~a~----aiI~pi~ 140 (468)
T KOG4277|consen 89 FPAIANEFGIQGYPTIKFFKG---DHA------IDYRGGREKDAIIEFAHRCAA----AIIEPIN 140 (468)
T ss_pred chhhHhhhccCCCceEEEecC---Cee------eecCCCccHHHHHHHHHhccc----ceeeecC
Confidence 999999999999999999984 332 567889999999999877655 5556665
No 61
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.10 E-value=4.7e-10 Score=86.02 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=72.9
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF 133 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~ 133 (347)
++|++.+ +.. ..++|.||++ ||+. |+++.|.++++++. + +++.|+.+|+++++++++++
T Consensus 1 ~~~~~~~---~~~--~~~ll~~~~~----~C~~-C~~~~~~~~~~~~~----~-------~~~~~~~i~~~~~~~~~~~~ 59 (93)
T cd02947 1 EEFEELI---KSA--KPVVVDFWAP----WCGP-CKAIAPVLEELAEE----Y-------PKVKFVKVDVDENPELAEEY 59 (93)
T ss_pred CchHHHH---hcC--CcEEEEEECC----CChh-HHHhhHHHHHHHHH----C-------CCceEEEEECCCChhHHHhc
Confidence 3577776 332 4689999998 8999 89999999999876 1 36899999999999999999
Q ss_pred CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++++|++++|+.+ +. ...+.+..+.+++.+||
T Consensus 60 ~v~~~P~~~~~~~g--~~------~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 60 GVRSIPTFLFFKNG--KE------VDRVVGADPKEELEEFL 92 (93)
T ss_pred CcccccEEEEEECC--EE------EEEEecCCCHHHHHHHh
Confidence 99999999999864 22 13334456678888876
No 62
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.10 E-value=3.2e-10 Score=94.40 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=63.7
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecC---CCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAH---QLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-- 126 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~---~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-- 126 (347)
+.++|++.+ ...++-.++|.|+|+ .-+.||++ |+.++|.++++++.+ ++++.|+++|+++.
T Consensus 8 ~~~~f~~~i---~~~~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~----------~~~v~fv~Vdvd~~~~ 73 (119)
T cd02952 8 GYEEFLKLL---KSHEGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAA----------PEDCVFIYCDVGDRPY 73 (119)
T ss_pred CHHHHHHHH---HhcCCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHC----------CCCCEEEEEEcCCccc
Confidence 446777777 322344799999991 11129999 899999999999876 23588999999873
Q ss_pred -----cchHhHcCCC-CCceEEEEcCC
Q 048343 127 -----QSSFALFAVN-SLPHIRLVGPD 147 (347)
Q Consensus 127 -----~~lf~~~~I~-svP~l~~fpp~ 147 (347)
.++.++++|+ ++||+++|..+
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCC
Confidence 5899999999 99999999754
No 63
>PTZ00051 thioredoxin; Provisional
Probab=99.09 E-value=3.5e-10 Score=89.69 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=66.3
Q ss_pred eEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 48 VIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 48 VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
|.++++ ++|++.+ +. +..+++.|+++ ||++ |+.+.|.++++++++ .++.|+.+|.+++
T Consensus 2 v~~i~~~~~~~~~~---~~--~~~vli~f~~~----~C~~-C~~~~~~l~~l~~~~-----------~~~~~~~vd~~~~ 60 (98)
T PTZ00051 2 VHIVTSQAEFESTL---SQ--NELVIVDFYAE----WCGP-CKRIAPFYEECSKEY-----------TKMVFVKVDVDEL 60 (98)
T ss_pred eEEecCHHHHHHHH---hc--CCeEEEEEECC----CCHH-HHHHhHHHHHHHHHc-----------CCcEEEEEECcch
Confidence 445554 5788876 32 45799999999 8999 899999999999854 2489999999999
Q ss_pred cchHhHcCCCCCceEEEEcCC
Q 048343 127 QSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~ 147 (347)
+++.++|+++++|++++|+.|
T Consensus 61 ~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 61 SEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred HHHHHHCCCceeeEEEEEeCC
Confidence 999999999999999999753
No 64
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.09 E-value=6e-10 Score=93.16 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=71.6
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
.++++++.+++++.+ ++ +...+|+|+++ ||++ |+.+.|.++++++.. ++-|+.+|+++
T Consensus 6 ~~~~~it~~~~~~~i---~~--~~~~iv~f~~~----~Cp~-C~~~~P~l~~~~~~~------------~~~~y~vdvd~ 63 (122)
T TIGR01295 6 KGLEVTTVVRALEAL---DK--KETATFFIGRK----TCPY-CRKFSGTLSGVVAQT------------KAPIYYIDSEN 63 (122)
T ss_pred ccceecCHHHHHHHH---Hc--CCcEEEEEECC----CChh-HHHHhHHHHHHHHhc------------CCcEEEEECCC
Confidence 368899999999998 32 22589999999 8999 899999999999862 23455666653
Q ss_pred Cc-----------chHhHcC----CCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHH
Q 048343 126 SQ-----------SSFALFA----VNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQ 175 (347)
Q Consensus 126 ~~-----------~lf~~~~----I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~ 175 (347)
++ ++.++++ +.++||+++|+.| +.. ....| ..++++|.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G--k~v------~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 64 NGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG--KQV------SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC--eEE------EEEeCCCCCHHHHHHHhh
Confidence 32 4446655 5559999999964 332 22333 456899988864
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.06 E-value=8.3e-10 Score=84.50 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=64.7
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL 151 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~ 151 (347)
|..|+++ ||++ |+++.|.++++|+.+ +.++.+.++|.++++++.+++|++++|++++ . |.
T Consensus 3 v~~f~~~----~C~~-C~~~~~~l~~l~~~~----------~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~--g~- 62 (82)
T TIGR00411 3 IELFTSP----TCPY-CPAAKRVVEEVAKEM----------GDAVEVEYINVMENPQKAMEYGIMAVPAIVI--N--GD- 62 (82)
T ss_pred EEEEECC----CCcc-hHHHHHHHHHHHHHh----------cCceEEEEEeCccCHHHHHHcCCccCCEEEE--C--CE-
Confidence 5689998 8999 899999999999876 2358999999999999999999999999986 2 22
Q ss_pred CCccccccccccccCHHHHHHHHHhh
Q 048343 152 KDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 152 ~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
..+.|..+.+++.+++.+.
T Consensus 63 -------~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 63 -------VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred -------EEEecCCCHHHHHHHHHhh
Confidence 1234556788999988764
No 66
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.3e-10 Score=115.14 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=74.7
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
+|+|++|+.++|+..+ .++| ..-+|.|+++ ||++ |+.|+|.|+++|+...+= ..-|..+.||+.
T Consensus 38 ~D~ii~Ld~~tf~~~v---~~~~-~~~lVEFy~s----wCGh-Cr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA 101 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAV---FGSR-KAKLVEFYNS----WCGH-CRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCA 101 (606)
T ss_pred CCCeEEeehhhhHHHh---cccc-hhHHHHHHHh----hhhh-hhhcchHHHHHHHHHhcc-------cceeEEEEeecc
Confidence 4789999999999998 4555 3467899998 9999 899999999999875321 235899999998
Q ss_pred C--CcchHhHcCCCCCceEEEEcCCC
Q 048343 125 E--SQSSFALFAVNSLPHIRLVGPDA 148 (347)
Q Consensus 125 ~--~~~lf~~~~I~svP~l~~fpp~~ 148 (347)
+ |.+++++++|++.|++.+|||+.
T Consensus 102 ~~~N~~lCRef~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 102 DEENVKLCREFSVSGYPTLRYFPPDS 127 (606)
T ss_pred chhhhhhHhhcCCCCCceeeecCCcc
Confidence 6 67999999999999999999963
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=9.4e-10 Score=100.55 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=77.7
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
+.+-..+.|.+-+ ++ + ..++.|++++ ..||++ |+.+.|.++++|+.+- +-++.++++|.++++
T Consensus 5 ~~~~~~~~~~~~~---~~--~-~~i~~f~~~~-a~wC~~-C~~~~p~l~~la~~~~---------~~~i~~v~vd~~~~~ 67 (215)
T TIGR02187 5 DREILKELFLKEL---KN--P-VEIVVFTDND-KEGCQY-CKETEQLLEELSEVSP---------KLKLEIYDFDTPEDK 67 (215)
T ss_pred HHHHHHHHHHHhc---CC--C-eEEEEEcCCC-CCCCCc-hHHHHHHHHHHHhhCC---------CceEEEEecCCcccH
Confidence 3444555644443 33 2 3466687721 129999 8999999999998761 124778888888999
Q ss_pred chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT 181 (347)
Q Consensus 128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~ 181 (347)
++.++|+|.++||+++|..| +.. -.++.|..+.+++.+||.+.++.+
T Consensus 68 ~l~~~~~V~~~Pt~~~f~~g--~~~-----~~~~~G~~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 68 EEAEKYGVERVPTTIILEEG--KDG-----GIRYTGIPAGYEFAALIEDIVRVS 114 (215)
T ss_pred HHHHHcCCCccCEEEEEeCC--eee-----EEEEeecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999864 221 023445566788889998886643
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.94 E-value=3.3e-09 Score=88.23 Aligned_cols=90 Identities=9% Similarity=0.186 Sum_probs=69.0
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHH---HHHHHhhhcCCCCCCCCCceEEEEEEccCC-------------cchHhH
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFS---LVASSFIANNVDNPSSRGKLFFCYLEFKES-------------QSSFAL 132 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe---~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-------------~~lf~~ 132 (347)
..++|.|+|+ ||++ |+.++|++. .+++.+. +++.+.++|+++. +++.++
T Consensus 15 k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 15 KPLLLLFSQP----GCPY-CDKLKRDYLNDPAVQAYIR----------AHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred CcEEEEEeCC----CCHH-HHHHHHHhcCcHHHHHHHH----------hheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 3699999999 8999 899999985 4555542 3578999999864 578999
Q ss_pred cCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
|+++++|++++|.++.|+.. ....|..+.+++.++|+...+
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~------~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEI------ARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cCCccccEEEEEcCCCCcee------EEecCCCCHHHHHHHHHHHHh
Confidence 99999999999998523332 334555677888888877654
No 69
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=7.1e-09 Score=102.74 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=88.7
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
+...+++..+|.... ... +...+|+|+|+ ||++ |+.+.|+|+++|+.+ .+++.++.+|.++
T Consensus 29 ~~~~~~~~~~~~~~~--~~~--~~~~~v~fyap----wc~~-c~~l~~~~~~~~~~l----------~~~~~~~~vd~~~ 89 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFL--LKD--DSPWLVEFYAP----WCGH-CKKLAPTYKKLAKAL----------KGKVKIGAVDCDE 89 (383)
T ss_pred cchhhhhccccHHHh--hcc--CCceEEEEECC----CCcc-hhhhchHHHHHHHHh----------cCceEEEEeCchh
Confidence 345666666666665 133 44788999999 8999 899999999999887 2379999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
++++++++++++.||+.+|.|+ .+. ..+.+.++++.+++|+.+.....+
T Consensus 90 ~~~~~~~y~i~gfPtl~~f~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 90 HKDLCEKYGIQGFPTLKVFRPG-KKP-------IDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred hHHHHHhcCCccCcEEEEEcCC-Cce-------eeccCcccHHHHHHHHHHhhcccc
Confidence 9999999999999999999986 222 344557889999999988877665
No 70
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=7.8e-09 Score=102.43 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=93.6
Q ss_pred CC-eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 46 AG-VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 46 ~~-VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
.+ +.+++++||++.+ .+. +-..+|.|+|| ||++ |+.++|+|+++|+.... +..+-.+++|.+
T Consensus 143 ~~~v~~l~~~~~~~~~--~~~--~~~~lv~f~aP----wc~~-ck~l~~~~~~~a~~~~~--------~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 143 EGEVFELTKDNFDETV--KDS--DADWLVEFYAP----WCGH-CKKLAPEWEKLAKLLKS--------KENVELGKIDAT 205 (383)
T ss_pred CCceEEccccchhhhh--hcc--CcceEEEEecc----ccHH-hhhcChHHHHHHHHhcc--------CcceEEEeeccc
Confidence 45 9999999999987 233 34678899999 8999 89999999999997732 357999999999
Q ss_pred CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT 181 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~ 181 (347)
....+.++++++..|++.+|+++. +. .+.+++.|+.+.+.+|+++..+.+
T Consensus 206 ~~~~~~~~~~v~~~Pt~~~f~~~~-~~------~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 206 VHKSLASRLEVRGYPTLKLFPPGE-ED------IYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hHHHHhhhhcccCCceEEEecCCC-cc------cccccccccHHHHHHHHHhhcCCC
Confidence 888999999999999999999864 21 134566799999999999988874
No 71
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.81 E-value=2.7e-08 Score=101.64 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhcCCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhh
Q 048343 8 NHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELH 87 (347)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~c 87 (347)
++++|+|+.+.+++++.+...+..+ ..++ +..+ .-.-+.+.|.+=+.+. .+ ++..++|.|||+ ||++
T Consensus 4 ~~~~~~~~~~~~~~~~s~c~~~~~~-~~~~-~~~~--~lP~f~l~D~dG~~v~--ls--kGKpVvV~FWAT----WCpp- 70 (521)
T PRK14018 4 RTFFSLCAKFGCLLALGACSPKILD-AGTA-TVPH--TLSTLKTADNRPASVY--LK--KDKPTLIKFWAS----WCPL- 70 (521)
T ss_pred hHHHHHHHHHHHHHhhcccccccCc-cccc-cccC--CCCCeEeecCCCceee--cc--CCCEEEEEEEcC----CCHH-
Confidence 5667776666665555433322221 1221 1111 1123444444444443 22 455899999999 8999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCceEE----------------------------EEEEccCCcchHhHcCCCCCc
Q 048343 88 LQELRNEFSLVASSFIANNVDNPSSRGKLFF----------------------------CYLEFKESQSSFALFAVNSLP 139 (347)
Q Consensus 88 C~~l~pefe~vA~s~~~~~p~~~~~~~~v~F----------------------------~~vD~~~~~~lf~~~~I~svP 139 (347)
|+...|+++++++.+..+ ++.| ..+++|++.++.+.|+++++|
T Consensus 71 Ck~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giP 141 (521)
T PRK14018 71 CLSELGETEKWAQDAKFS---------SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYP 141 (521)
T ss_pred HHHHHHHHHHHHHHhccC---------CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcC
Confidence 899999999999987421 1111 245666777899999999999
Q ss_pred eEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343 140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
+.+++-++ |+.. ....|..+.++|.++|+
T Consensus 142 Tt~IIDkd-GkIV------~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 142 SWAIIGKD-GDVQ------RIVKGSISEAQALALIR 170 (521)
T ss_pred eEEEEcCC-CeEE------EEEeCCCCHHHHHHHHH
Confidence 99888654 4543 44456677888888887
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.80 E-value=4.8e-08 Score=89.29 Aligned_cols=97 Identities=14% Similarity=0.011 Sum_probs=73.9
Q ss_pred EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343 49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS 128 (347)
Q Consensus 49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~ 128 (347)
-.+++++.+.+-. .++ -..++.|||+ ||++ |+.+.|.+++++... +++.|.++|.+++++
T Consensus 118 ~~L~~~~~~~l~~-~~~---pv~I~~F~a~----~C~~-C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~~~ 177 (215)
T TIGR02187 118 PGLSEKTVELLQS-LDE---PVRIEVFVTP----TCPY-CPYAVLMAHKFALAN-----------DKILGEMIEANENPD 177 (215)
T ss_pred CCCCHHHHHHHHh-cCC---CcEEEEEECC----CCCC-cHHHHHHHHHHHHhc-----------CceEEEEEeCCCCHH
Confidence 4777777776641 122 2456669998 8999 899999888887542 368899999999999
Q ss_pred hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
+.++++++++|+++++..+ . .+.|..+.+++.+|+.+
T Consensus 178 ~~~~~~V~~vPtl~i~~~~--~---------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 178 LAEKYGVMSVPKIVINKGV--E---------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHhCCccCCEEEEecCC--E---------EEECCCCHHHHHHHHHh
Confidence 9999999999999998632 1 13455678889998864
No 73
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.79 E-value=5.3e-08 Score=82.29 Aligned_cols=110 Identities=6% Similarity=0.041 Sum_probs=87.1
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
|.-.++.++.++++ .+++ ..+| |-+.+|.. ++- +.+..=..+++|++|. ++++.|+++|+|++
T Consensus 18 g~~~~~~~~~~~~~---~~~~--~~vl-~~~gdp~r-~~E-~~D~avvleELa~e~~---------~~~v~~akVDiD~~ 80 (132)
T PRK11509 18 GWTPVSESRLDDWL---TQAP--DGVV-LLSSDPKR-TPE-VSDNPVMIGELLREFP---------DYTWQVAIADLEQS 80 (132)
T ss_pred CCCccccccHHHHH---hCCC--cEEE-EeCCCCCc-CCc-cccHHHHHHHHHHHhc---------CCceEEEEEECCCC
Confidence 67788999999998 4433 3444 44556664 667 6999999999999982 24699999999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT 181 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~ 181 (347)
+++.++|||+++|++++|+.| +.. ....|..+.+++.+||++.+...
T Consensus 81 ~~LA~~fgV~siPTLl~FkdG--k~v------~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 81 EAIGDRFGVFRFPATLVFTGG--NYR------GVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred HHHHHHcCCccCCEEEEEECC--EEE------EEEeCcCCHHHHHHHHHHHhcCc
Confidence 999999999999999999974 332 44456788999999999987753
No 74
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.76 E-value=1e-08 Score=84.98 Aligned_cols=68 Identities=10% Similarity=0.211 Sum_probs=51.7
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-chHhHcCCCC--CceEEEE
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-SSFALFAVNS--LPHIRLV 144 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-~lf~~~~I~s--vP~l~~f 144 (347)
+..++|.|+|+ ||++ |+.++|.+++.++.... +.-|+.+|+++++ ...+++++.+ +|++++|
T Consensus 19 ~kpVlV~F~a~----WC~~-C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 19 GKPLMLLIHKT----WCGA-CKALKPKFAESKEISEL----------SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred CCcEEEEEeCC----cCHH-HHHHHHHHhhhHHHHhh----------cCcEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence 45799999999 8999 89999999998775421 2235566776554 4567899987 9999999
Q ss_pred cCCCCCC
Q 048343 145 GPDAKSL 151 (347)
Q Consensus 145 pp~~g~~ 151 (347)
.|+ |+.
T Consensus 84 ~~~-Gk~ 89 (117)
T cd02959 84 DPS-GDV 89 (117)
T ss_pred CCC-CCC
Confidence 875 554
No 75
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.76 E-value=3e-08 Score=103.14 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=77.7
Q ss_pred eEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343 48 VIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEF 123 (347)
Q Consensus 48 VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~ 123 (347)
..+++ .+++++.+. ....++..++|+|||+ ||++ |++++|+. +++++.+ +++.+.++|+
T Consensus 454 ~~~i~s~~~l~~~l~-~a~~~gK~VlVdF~A~----WC~~-Ck~~e~~~~~~~~v~~~l-----------~~~~~v~vDv 516 (571)
T PRK00293 454 FQRIKTVAELDQALA-EAKGKGKPVMLDLYAD----WCVA-CKEFEKYTFSDPQVQQAL-----------ADTVLLQADV 516 (571)
T ss_pred ceecCCHHHHHHHHH-HHHhcCCcEEEEEECC----cCHh-HHHHHHHhcCCHHHHHHh-----------cCCEEEEEEC
Confidence 44553 467777662 1112345799999999 8999 89999875 5666544 2478999999
Q ss_pred cCC----cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 124 KES----QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 124 ~~~----~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
+++ +++.++++++++|++++|+++ |++. ...+..+..+++++.+++++.
T Consensus 517 t~~~~~~~~l~~~~~v~g~Pt~~~~~~~-G~~i----~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 517 TANNAEDVALLKHYNVLGLPTILFFDAQ-GQEI----PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCChhhHHHHHHcCCCCCCEEEEECCC-CCCc----ccccccCCCCHHHHHHHHHHh
Confidence 864 578999999999999999874 4431 013345567899999999874
No 76
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.74 E-value=2.5e-08 Score=73.73 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=50.0
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~ 143 (347)
+++|+++ ||++ |++++|.+++++.+. +++-|.++|+++++++.+++|+.++|++++
T Consensus 3 v~~f~~~----~C~~-C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSP----TCPY-CPDAVQAANRIAALN-----------PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECC----CCCC-cHHHHHHHHHHHHhC-----------CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 6789998 8999 899999999998642 368999999999999999999999999876
No 77
>PTZ00062 glutaredoxin; Provisional
Probab=98.61 E-value=1.9e-07 Score=84.86 Aligned_cols=91 Identities=10% Similarity=0.176 Sum_probs=68.5
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA 131 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~ 131 (347)
+.+.|++++ ++.+ -.+|++|+|+ ||++ |+.+.|.++++|+.| .++.|++||.+
T Consensus 5 ~~ee~~~~i---~~~~-g~~vl~f~a~----w~~~-C~~m~~vl~~l~~~~-----------~~~~F~~V~~d------- 57 (204)
T PTZ00062 5 KKEEKDKLI---ESNT-GKLVLYVKSS----KEPE-YEQLMDVCNALVEDF-----------PSLEFYVVNLA------- 57 (204)
T ss_pred CHHHHHHHH---hcCC-CcEEEEEeCC----CCcc-hHHHHHHHHHHHHHC-----------CCcEEEEEccc-------
Confidence 456788876 3211 2588999999 8999 899999999999876 25999999987
Q ss_pred HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
++|.++|++++|..| +.. ++.+| -++.++.+++++..+
T Consensus 58 -~~V~~vPtfv~~~~g--~~i------~r~~G-~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 58 -DANNEYGVFEFYQNS--QLI------NSLEG-CNTSTLVSFIRGWAQ 95 (204)
T ss_pred -cCcccceEEEEEECC--EEE------eeeeC-CCHHHHHHHHHHHcC
Confidence 999999999999864 332 33333 346667777766655
No 78
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.59 E-value=2e-08 Score=91.34 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=90.9
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
..++.+|++|+++++ +| ..+++|.|+ ||+- |+.+.|+++..|. |.. +=.|-.+++|+..
T Consensus 24 s~~~~~~eenw~~~l---~g----ewmi~~~ap----~~ps-c~~~~~~~~~~a~-~s~--------dL~v~va~VDvt~ 82 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL---TG----EWMIEFGAP----WCPS-CSDLIPHLENFAT-VSL--------DLGVKVAKVDVTT 82 (248)
T ss_pred ceeEEecccchhhhh---ch----HHHHHhcCC----CCcc-ccchHHHHhccCC-ccC--------CCceeEEEEEEEe
Confidence 379999999999997 44 367889999 8999 8999999998874 322 3469999999999
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
++.+..+|-+...|+|+|.++| + +.+|.++|+..++.+|+..+--..+
T Consensus 83 npgLsGRF~vtaLptIYHvkDG--e-------FrrysgaRdk~dfisf~~~r~w~~i 130 (248)
T KOG0913|consen 83 NPGLSGRFLVTALPTIYHVKDG--E-------FRRYSGARDKNDFISFEEHREWQSI 130 (248)
T ss_pred ccccceeeEEEecceEEEeecc--c-------cccccCcccchhHHHHHHhhhhhcc
Confidence 9999999999999999999874 2 4688899999999999988765444
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.53 E-value=9.4e-07 Score=76.80 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=58.4
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------CcchH-hHc---CC
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------SQSSF-ALF---AV 135 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------~~~lf-~~~---~I 135 (347)
+.+|.|||+ ||++ |++..|+++++++.|. -++....+|-+. ..+.. +.+ ++
T Consensus 52 ~~lvnFWAs----WCpp-Cr~e~P~L~~l~~~~~----------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v 116 (153)
T TIGR02738 52 YALVFFYQS----TCPY-CHQFAPVLKRFSQQFG----------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP 116 (153)
T ss_pred CEEEEEECC----CChh-HHHHHHHHHHHHHHcC----------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCC
Confidence 459999999 8999 8999999999998761 234444444221 12333 345 89
Q ss_pred CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 136 NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 136 ~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.++|+.+++.+. |... .....|..+.+++.+.+.+.
T Consensus 117 ~~iPTt~LID~~-G~~i-----~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 117 VVTPATFLVNVN-TRKA-----YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCeEEEEeCC-CCEE-----EEEeecccCHHHHHHHHHHh
Confidence 999999999875 3321 12334567788887777653
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.53 E-value=6.7e-07 Score=78.02 Aligned_cols=88 Identities=8% Similarity=0.089 Sum_probs=67.0
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc----------------------CC
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK----------------------ES 126 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~----------------------~~ 126 (347)
..++|.|||+ ||+. |+...|.+.++++++.+ .++.+..++.+ ++
T Consensus 62 k~~~l~f~a~----~C~~-C~~~~~~l~~~~~~~~~---------~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~ 127 (173)
T PRK03147 62 KGVFLNFWGT----WCKP-CEKEMPYMNELYPKYKE---------KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKG 127 (173)
T ss_pred CEEEEEEECC----cCHH-HHHHHHHHHHHHHHhhc---------CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCc
Confidence 3588999998 8999 89999999999998842 23555555554 34
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.++.+.++++++|+.+++.++ |+.. ..+.+..+.+++.+++++.
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~-g~i~------~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKD-GKVV------KVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHcCCCCcCeEEEECCC-CcEE------EEEeCCCCHHHHHHHHHHh
Confidence 678899999999999999875 4432 3445667888898888753
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.50 E-value=4.8e-07 Score=85.72 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=65.6
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------CcchHhHcCCCCCc
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------SQSSFALFAVNSLP 139 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------~~~lf~~~~I~svP 139 (347)
.+++|.|+|+ ||++ |+.+.|.++.+++.| +-.+.++.+|-+. ++++.+++||+++|
T Consensus 167 k~~Lv~F~As----wCp~-C~~~~P~L~~la~~y----------g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vP 231 (271)
T TIGR02740 167 KSGLFFFFKS----DCPY-CHQQAPILQAFEDRY----------GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVP 231 (271)
T ss_pred CeEEEEEECC----CCcc-HHHHhHHHHHHHHHc----------CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCC
Confidence 3689999999 8999 899999999999886 1245555555432 34689999999999
Q ss_pred eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
+++++.++.+... ....|..+.++|.+.+...+.
T Consensus 232 tl~Lv~~~~~~v~------~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 232 AVFLADPDPNQFT------PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred eEEEEECCCCEEE------EEEeCCCCHHHHHHHHHHHhc
Confidence 9999998423221 222345678888888765544
No 82
>PHA02125 thioredoxin-like protein
Probab=98.46 E-value=2.5e-07 Score=70.40 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=44.0
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIR 142 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~ 142 (347)
++.|||+ ||++ |+.+.|.+++++ ..|+++|.++++++.++|+++++||++
T Consensus 2 iv~f~a~----wC~~-Ck~~~~~l~~~~----------------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAE----WCAN-CKMVKPMLANVE----------------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECC----CCHh-HHHHHHHHHHHh----------------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 6899999 8999 899999987542 247899999999999999999999998
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.40 E-value=1.4e-06 Score=72.81 Aligned_cols=72 Identities=10% Similarity=0.173 Sum_probs=52.8
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------C
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------S 126 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------~ 126 (347)
..++|.|||+ ||++ |++..|+++++++.+.... ++-.+.++.+|-++ .
T Consensus 19 k~vll~Fwa~----wC~~-C~~~~p~l~~~~~~~~~~~-----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T cd03009 19 KTVGLYFSAS----WCPP-CRAFTPKLVEFYEKLKESG-----KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR 88 (131)
T ss_pred cEEEEEEECC----CChH-HHHHhHHHHHHHHHHHhcC-----CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence 3699999998 8999 8999999999998875321 01135555555332 1
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCC
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSL 151 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~ 151 (347)
..+.++|+++++|+++++.++ |+.
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~-G~i 112 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDAD-GEV 112 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCC-CCE
Confidence 357889999999999999875 443
No 84
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.39 E-value=5.8e-06 Score=68.42 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=81.0
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
..|.+.|++-+|++.+ . |.-+++|-|... =|. .+-+.+|.++|++-.+ ..+++.+|.|-+.
T Consensus 3 ~~G~v~LD~~tFdKvi---~--kf~~~LVKFD~a-----yPy--GeKhd~F~~~A~e~~~-------~~~dLLvAeVGik 63 (126)
T PF07912_consen 3 CKGCVPLDELTFDKVI---P--KFKYVLVKFDVA-----YPY--GEKHDAFKKLAKEASA-------SSDDLLVAEVGIK 63 (126)
T ss_dssp STTSEEESTTHHHHHG---G--GSSEEEEEEEES-----S----CHHHHHHHHHHHHHHC-------C-SSEEEEEEECB
T ss_pred cCceeeccceehhhee---c--cCceEEEEEecc-----CCC--cchHHHHHHHHHHHhc-------CCCceEEEEeCcc
Confidence 4689999999999998 2 345899999875 233 6778999999955332 3568999999887
Q ss_pred C-----CcchHhHcCC--CCCceEEEEcCCCCCCCCcccccccc--ccccCHHHHHHHHHhhcCCCC
Q 048343 125 E-----SQSSFALFAV--NSLPHIRLVGPDAKSLKDDSVQMEQG--DFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 125 ~-----~~~lf~~~~I--~svP~l~~fpp~~g~~~~~~~~~~~~--~~~~~a~~l~~fi~~~t~~~i 182 (347)
+ |.++.++|++ ++.|.+.+|..+ .+ .+.++ +++.+++.|.+|+++++++.+
T Consensus 64 DYGek~N~~Laery~i~ke~fPv~~LF~~~-~~------~pv~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 64 DYGEKENMELAERYKIDKEDFPVIYLFVGD-KE------EPVRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp SSSS-CCHHHHHHTT-SCCC-SEEEEEESS-TT------SEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred cccchhHHHHHHHhCCCcccCCEEEEecCC-CC------CCccCCccCCccHHHHHHHHHhCCCeee
Confidence 5 5699999999 679999999932 22 12333 667899999999999999755
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.38 E-value=4.3e-07 Score=73.59 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=58.3
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--------------------c
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--------------------Q 127 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--------------------~ 127 (347)
+.+++++|+++ ||+. |+.+.++.....+ +... -++++.+..+|+++. +
T Consensus 5 ~k~~v~~F~~~----~C~~-C~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (112)
T PF13098_consen 5 GKPIVVVFTDP----WCPY-CKKLEKELFPDND-VARY------LKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNK 72 (112)
T ss_dssp SSEEEEEEE-T----T-HH-HHHHHHHHHHHHH-HHCE------EHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHH
T ss_pred CCEEEEEEECC----CCHH-HHHHHHHHHHHHH-HHHH------hhcCeEEEEEecCCcccccccccccccchhhhHHHH
Confidence 34789999998 8999 8999999986543 1111 123577888888753 3
Q ss_pred chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
++.+++|+++.|+++++.+. |+.. ....|..++++|.++|
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~-G~~v------~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKD-GKIV------YRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTT-SCEE------EEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCC-CCEE------EEecCCCCHHHHHhhC
Confidence 58999999999999999753 4432 3345667888888764
No 86
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.36 E-value=2.3e-06 Score=71.82 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=57.3
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-HH--HHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-FS--LVASSFIANNVDNPSSRGKLFFCYLEFKESQS 128 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-fe--~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~ 128 (347)
+++.+++.. +. +..++|.|+|+ ||+. |+.++++ |. +|++.. .++..++++|.+++++
T Consensus 4 ~~eal~~Ak---~~--~KpVll~f~a~----WC~~-Ck~me~~~f~~~~V~~~l----------~~~fv~VkvD~~~~~~ 63 (124)
T cd02955 4 GEEAFEKAR---RE--DKPIFLSIGYS----TCHW-CHVMEHESFEDEEVAAIL----------NENFVPIKVDREERPD 63 (124)
T ss_pred CHHHHHHHH---Hc--CCeEEEEEccC----CCHh-HHHHHHHccCCHHHHHHH----------hCCEEEEEEeCCcCcH
Confidence 345555553 33 44799999998 8999 8999874 33 455443 2358899999999887
Q ss_pred hHh--------HcCCCCCceEEEEcCCCCCC
Q 048343 129 SFA--------LFAVNSLPHIRLVGPDAKSL 151 (347)
Q Consensus 129 lf~--------~~~I~svP~l~~fpp~~g~~ 151 (347)
+.+ .+++.+.|+++++.|+ |+.
T Consensus 64 ~~~~~~~~~~~~~~~~G~Pt~vfl~~~-G~~ 93 (124)
T cd02955 64 VDKIYMNAAQAMTGQGGWPLNVFLTPD-LKP 93 (124)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCC-CCE
Confidence 654 3589999999999986 554
No 87
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.34 E-value=3.8e-06 Score=74.78 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=62.2
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE----------cc-CCcchHhHcCC-
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE----------FK-ESQSSFALFAV- 135 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD----------~~-~~~~lf~~~~I- 135 (347)
+|. +|.|||+ ||++ |++..|++++++++|. -.++-+.+| .+ ....+.+.|+.
T Consensus 70 d~~-lV~Fwas----wCp~-C~~e~P~L~~l~~~~g----------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~ 133 (181)
T PRK13728 70 DWK-VVLFMQG----HCPY-CHQFDPVLKQLAQQYG----------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI 133 (181)
T ss_pred Hce-EEEEECC----CCHh-HHHHHHHHHHHHHHcC----------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC
Confidence 444 7779998 8999 8999999999998861 123333333 11 12246778995
Q ss_pred -CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343 136 -NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL 180 (347)
Q Consensus 136 -~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~ 180 (347)
.++|+.+++.++ |... ...+.|..+.+++.+.+.+.+..
T Consensus 134 ~~~iPttfLId~~-G~i~-----~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 134 PVATPTTFLVNVN-TLEA-----LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCCCCeEEEEeCC-CcEE-----EEEEECCCCHHHHHHHHHHHHhh
Confidence 699999999875 3321 12345667788888888777665
No 88
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.28 E-value=9.7e-06 Score=72.34 Aligned_cols=86 Identities=6% Similarity=-0.066 Sum_probs=57.9
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-----------------------c
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-----------------------K 124 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-----------------------~ 124 (347)
+..++|.|||+ ||++ |++..|+++++++. ++.+..++. |
T Consensus 68 gk~vvv~Fwat----wC~~-C~~e~p~l~~l~~~-------------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D 129 (185)
T PRK15412 68 GKPVLLNVWAT----WCPT-CRAEHQYLNQLSAQ-------------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFD 129 (185)
T ss_pred CCEEEEEEECC----CCHH-HHHHHHHHHHHHHc-------------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEc
Confidence 34699999998 8999 79999999888642 112222222 3
Q ss_pred CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
++.++.+.||+.++|+.+++.++ |+.. ..+.+..+.+++.++++...
T Consensus 130 ~~~~~~~~~gv~~~P~t~vid~~-G~i~------~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 130 GDGMLGLDLGVYGAPETFLIDGN-GIIR------YRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCccHHHhcCCCcCCeEEEECCC-ceEE------EEEecCCCHHHHHHHHHHHH
Confidence 34456678999999988888764 5542 33445566777777666543
No 89
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.27 E-value=2.7e-06 Score=75.01 Aligned_cols=100 Identities=9% Similarity=-0.092 Sum_probs=66.6
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh---h-cCCCCCC------CCCceEEEEEEccCCcchHhHcCCCC
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI---A-NNVDNPS------SRGKLFFCYLEFKESQSSFALFAVNS 137 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~---~-~~p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~s 137 (347)
+..++|.||++ ||++ |++..|.++++++.-. . +..+..+ .+.++-|-.+..|++.++.++|++.+
T Consensus 63 gk~vll~F~a~----wC~~-C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 63 GKPVLLNVWAS----WCPP-CRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCEEEEEEECC----cCHH-HHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 34799999998 9999 8999999998876400 0 0000000 01112243456677778999999999
Q ss_pred CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 138 LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 138 vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
+|+.+++.++ |+.. ..+.+..+.+++.+++++..+
T Consensus 138 ~P~~~~id~~-G~i~------~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGN-GVIL------YRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCC-ceEE------EEEeccCCHHHHHHHHHHHhh
Confidence 9988888654 4432 344456788999999988754
No 90
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.26 E-value=1.9e-06 Score=65.77 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=43.8
Q ss_pred EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343 73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL 143 (347)
Q Consensus 73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~ 143 (347)
|.|+|+ ||++ |+.++|.++++++++ +.++-|.++| + .+...++++.++|++++
T Consensus 3 i~~~a~----~C~~-C~~~~~~~~~~~~e~----------~~~~~~~~v~--~-~~~a~~~~v~~vPti~i 55 (76)
T TIGR00412 3 IQIYGT----GCAN-CQMTEKNVKKAVEEL----------GIDAEFEKVT--D-MNEILEAGVTATPGVAV 55 (76)
T ss_pred EEEECC----CCcC-HHHHHHHHHHHHHHc----------CCCeEEEEeC--C-HHHHHHcCCCcCCEEEE
Confidence 678887 9999 899999999999986 2457887777 2 33377899999999999
No 91
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.26 E-value=4.4e-06 Score=70.13 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=51.7
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--------------------- 126 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--------------------- 126 (347)
+..++|.|+|+ ||++ |++..|+++++++.+..+ ..++.+.-++++++
T Consensus 17 Gk~vll~F~at----wC~~-C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d 84 (132)
T cd02964 17 GKTVGLYFSAS----WCPP-CRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFED 84 (132)
T ss_pred CCEEEEEEECC----CCch-HHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCc
Confidence 34799999999 8999 899999999999988432 12343444444332
Q ss_pred ----cchHhHcCCCCCceEEEEcCCCCCC
Q 048343 127 ----QSSFALFAVNSLPHIRLVGPDAKSL 151 (347)
Q Consensus 127 ----~~lf~~~~I~svP~l~~fpp~~g~~ 151 (347)
..+.+.|+++++|+.+++.++ |+.
T Consensus 85 ~~~~~~~~~~~~v~~iPt~~lid~~-G~i 112 (132)
T cd02964 85 EELRELLEKQFKVEGIPTLVVLKPD-GDV 112 (132)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCC-CCE
Confidence 245677999999999999864 443
No 92
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.20 E-value=7.3e-06 Score=70.68 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=53.1
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------- 125 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------- 125 (347)
..++|.|||+ ||++ |++..|.++++.+.+.+.++.. .++++-+.-++.|+
T Consensus 26 k~vlL~FwAs----WCpp-Cr~e~P~L~~ly~~~~~~~~~~--~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~ 98 (146)
T cd03008 26 RVLLLFFGAV----VSPQ-CQLFAPKLKDFFVRLTDEFYVD--RSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED 98 (146)
T ss_pred CEEEEEEECC----CChh-HHHHHHHHHHHHHHHHhhcccc--cCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccc
Confidence 4799999999 8999 8999999999988775432100 11234444444332
Q ss_pred --CcchHhHcCCCCCceEEEEcCCCCCC
Q 048343 126 --SQSSFALFAVNSLPHIRLVGPDAKSL 151 (347)
Q Consensus 126 --~~~lf~~~~I~svP~l~~fpp~~g~~ 151 (347)
..++.++|++.++|+.+++.|. |+.
T Consensus 99 ~~~~~l~~~y~v~~iPt~vlId~~-G~V 125 (146)
T cd03008 99 EFRRELEAQFSVEELPTVVVLKPD-GDV 125 (146)
T ss_pred hHHHHHHHHcCCCCCCEEEEECCC-CcE
Confidence 1257888999999999999985 554
No 93
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.19 E-value=3.2e-06 Score=66.74 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=50.9
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL 143 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~ 143 (347)
.-+..|+++ ||+. |+...+-+++++..+ +++-|..+|+++.++++++||+.++|++++
T Consensus 14 v~i~~F~~~----~C~~-C~~~~~~~~~l~~~~-----------~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 14 INFETYVSL----SCHN-CPDVVQALNLMAVLN-----------PNIEHEMIDGALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EEEEEEECC----CCCC-cHHHHHHHHHHHHHC-----------CCceEEEEEhHhCHHHHHHcCCccCCEEEE
Confidence 456778887 8999 799999999998653 369999999999999999999999999975
No 94
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.15 E-value=7.3e-06 Score=67.99 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=51.8
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhc----C-CCCCC------CCCceEEEEEEccCCcchHhHcCCCC
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIAN----N-VDNPS------SRGKLFFCYLEFKESQSSFALFAVNS 137 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~----~-p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~s 137 (347)
..++|.|||+ ||++ |++..|+++++++.+.-+ . .+..+ ...++-|..+.+|++.++.+.|++++
T Consensus 26 k~vvv~F~a~----~C~~-C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 26 KPYLLNVWAS----WCAP-CREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CEEEEEEEcC----cCHH-HHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 3689999998 8999 799999999998775100 0 00000 01122344455667778999999999
Q ss_pred CceEEEEcCCCCCC
Q 048343 138 LPHIRLVGPDAKSL 151 (347)
Q Consensus 138 vP~l~~fpp~~g~~ 151 (347)
+|+.+++.++ |..
T Consensus 101 ~P~~~~ld~~-G~v 113 (127)
T cd03010 101 VPETFLIDGD-GII 113 (127)
T ss_pred CCeEEEECCC-ceE
Confidence 9987777653 443
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.12 E-value=1.4e-05 Score=63.30 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=56.0
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----------------------
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------- 126 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------- 126 (347)
..++++|+++ ||+. |+...|.+.++.+++. ++++.++.++.+.+
T Consensus 20 k~~ll~f~~~----~C~~-C~~~~~~l~~~~~~~~---------~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 20 KVVLVNFWAS----WCPP-CRAEMPELEALAKEYK---------DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CEEEEEeecc----cChh-HHHHhHHHHHHHHHhC---------CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 3689999998 8999 7999999999998873 24688889999875
Q ss_pred -cchHhHcCCCCCceEEEEcCC
Q 048343 127 -QSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 127 -~~lf~~~~I~svP~l~~fpp~ 147 (347)
.++.+.|++.++|+++++.|+
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~~ 107 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDRD 107 (116)
T ss_pred cchHHHhcCcCccceEEEECCC
Confidence 789999999999999999875
No 96
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.10 E-value=3.3e-05 Score=67.66 Aligned_cols=106 Identities=21% Similarity=0.428 Sum_probs=79.9
Q ss_pred CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
.-|.++|++|++++. +++++ .++++|... .... ...+...++.+|+++ .+++.|+.+|.+.
T Consensus 77 P~v~~~t~~n~~~~~---~~~~~-~~~~~~~~~----~~~~-~~~~~~~l~~~a~~~----------~~~~~f~~~d~~~ 137 (184)
T PF13848_consen 77 PLVPELTPENFEKLF---SSPKP-PVLILFDNK----DNES-TEAFKKELQDIAKKF----------KGKINFVYVDADD 137 (184)
T ss_dssp TSCEEESTTHHHHHH---STSSE-EEEEEEETT----THHH-HHHHHHHHHHHHHCT----------TTTSEEEEEETTT
T ss_pred ccccccchhhHHHHh---cCCCc-eEEEEEEcC----Cchh-HHHHHHHHHHHHHhc----------CCeEEEEEeehHH
Confidence 359999999999997 44332 355566543 3455 588888899999876 2579999999998
Q ss_pred CcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 126 SQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 126 ~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
.++..+.+|++ .+|+++++.+..+. .. ...++..+.+.+.+|+++
T Consensus 138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~-----~~-~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 138 FPRLLKYFGIDEDDLPALVIFDSNKGK-----YY-YLPEGEITPESIEKFLND 184 (184)
T ss_dssp THHHHHHTTTTTSSSSEEEEEETTTSE-----EE-E--SSCGCHHHHHHHHHH
T ss_pred hHHHHHHcCCCCccCCEEEEEECCCCc-----EE-cCCCCCCCHHHHHHHhcC
Confidence 88999999999 89999999864321 11 112557889999999974
No 97
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.09 E-value=6.8e-06 Score=78.92 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCCCeEEcChhhHHHHhcccCCCCCceEE-EEEecCCCCCCChhhcccc---hHHHHHHHHHhhhcCCCCCCCCCceEEE
Q 048343 44 SEAGVIHLNDQLVSRFLTSTKTPRPYSIL-IFFDAHQLHNKPELHLQEL---RNEFSLVASSFIANNVDNPSSRGKLFFC 119 (347)
Q Consensus 44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vv-V~fTA~~~~~~C~~cC~~l---~pefe~vA~s~~~~~p~~~~~~~~v~F~ 119 (347)
..+.|++||+.||++.+ . .|.++ |+|+.+.+... .. -+++ +-..|.+|+-. .+..+-|+
T Consensus 32 GkDRVi~LneKNfk~~l---K---kyd~l~l~yh~p~~~dk-~~-qkq~~m~E~~LELaAQVl---------E~~gigfg 94 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRAL---K---KYDVLVLYYHEPVESDK-VS-QKQFQMTELVLELAAQVL---------EDKGIGFG 94 (383)
T ss_dssp SS--CEEE-TTTHHHHH---H---H-SEEEEEEE--STSSH-HH-HHHHHHHHHHHHHHHHHC---------GGCTEEEE
T ss_pred CccceEEcchhHHHHHH---H---hhcEEEEEEecCCccCH-HH-HHHHHHHHHHHHHHHHhc---------cccCcceE
Confidence 45679999999999997 2 34455 45666543211 11 1222 22334444433 13469999
Q ss_pred EEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 120 YLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 120 ~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
.||..+..++++++|+...+++++|+.+ . ...|+|.++|+.+.+||-+...-++
T Consensus 95 ~VD~~Kd~klAKKLgv~E~~SiyVfkd~--~-------~IEydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 95 MVDSKKDAKLAKKLGVEEEGSIYVFKDG--E-------VIEYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp EEETTTTHHHHHHHT--STTEEEEEETT--E-------EEEE-S--SHHHHHHHHHHHHSSSE
T ss_pred EeccHHHHHHHHhcCccccCcEEEEECC--c-------EEEecCccCHHHHHHHHHHhcccch
Confidence 9999999999999999999999999863 2 2467788999999999998877544
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.07 E-value=1.8e-05 Score=80.90 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=72.6
Q ss_pred hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHH-HHHHHhhhcCCCCCCCCCceEEEEEEccCCc----ch
Q 048343 55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFS-LVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SS 129 (347)
Q Consensus 55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe-~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~l 129 (347)
..++.+ ...|+..++|+|||. ||-. ||++++.-- ++.... .-.++..-++|.+++. ++
T Consensus 464 ~L~~~l---a~~~~~pVmlDfyAd----WCvt-CK~~e~~tfsd~~v~~---------~~~~~vlLqaDvT~~~p~~~~l 526 (569)
T COG4232 464 ELDQAL---AEAKAKPVMLDFYAD----WCVT-CKENEKYTFSDPQVQQ---------ALQDVVLLQADVTANDPAITAL 526 (569)
T ss_pred HHHHHH---HhCCCCcEEEeeehh----HHHH-hHhhhhhccCcHHHHH---------hcCCeEEEEeeecCCCHHHHHH
Confidence 566666 444667899999999 9999 798877532 222111 1246899999999753 78
Q ss_pred HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.++||+-++|++++|+++ |++. ....+-.+++.+.+++++.
T Consensus 527 Lk~~~~~G~P~~~ff~~~-g~e~------~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 527 LKRLGVFGVPTYLFFGPQ-GSEP------EILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHcCCCCCCEEEEECCC-CCcC------cCCcceecHHHHHHHHHHh
Confidence 999999999999999986 4432 1134457899999999765
No 99
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.06 E-value=1.7e-05 Score=64.89 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=71.2
Q ss_pred hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-H--HHHHHHhhhcCCCCCCCCCceEEEEEEccC--Ccch
Q 048343 55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-F--SLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSS 129 (347)
Q Consensus 55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-f--e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~l 129 (347)
+|++.+. .+..++..++|+|+++ ||+. |+.+..+ | +.|.+.. +++..+.++|+++ +.++
T Consensus 5 s~~~a~~-~Ak~~~K~llv~~~~~----~c~~-c~~~~~~vl~~~~v~~~l----------~~~~v~~~~d~~~~e~~~~ 68 (114)
T cd02958 5 SFEDAKQ-EAKSEKKWLLVYLQSE----DEFD-SQVLNRDLWSNESVKEFI----------RENFIFWQCDIDSSEGQRF 68 (114)
T ss_pred CHHHHHH-HHHhhCceEEEEEecC----Ccch-HHHHHHHHcCCHHHHHHH----------HhCEEEEEecCCCccHHHH
Confidence 4555442 1233456899999998 8999 7988764 2 3343333 2357888899984 5689
Q ss_pred HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
.+.|++.++|++.++.|.+|+.. .+..|..+++++.+-|++..
T Consensus 69 ~~~~~~~~~P~~~~i~~~~g~~l------~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVL------KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred HHHhCccCCCeEEEEeCccCcEe------EEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999988434432 34456678888888887653
No 100
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.02 E-value=2.5e-05 Score=64.17 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=56.0
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhc----CCCCCC------CCCceEEEEEEccCCcchHhHcCCCCCc
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIAN----NVDNPS------SRGKLFFCYLEFKESQSSFALFAVNSLP 139 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~----~p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~svP 139 (347)
.++|.|+++ ||++ |+...|.++++++++.-- .++..+ ...++-|- +-.+++.++.++|++.++|
T Consensus 22 ~~vl~F~~~----~C~~-C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 22 PVLVYFWAT----WCPV-CRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFP-VINDPDGVISARWGVSVTP 95 (123)
T ss_pred EEEEEEECC----cChh-hhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCcc-EEECCCcHHHHhCCCCccc
Confidence 688999998 8999 899999999988764200 000000 00112222 2235567899999999999
Q ss_pred eEEEEcCCCCCCCCccccccccccccCHHHHH
Q 048343 140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMA 171 (347)
Q Consensus 140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~ 171 (347)
+++++.++ | .. ....|..+.+++.
T Consensus 96 ~~~vid~~-g-i~------~~~~g~~~~~~~~ 119 (123)
T cd03011 96 AIVIVDPG-G-IV------FVTTGVTSEWGLR 119 (123)
T ss_pred EEEEEcCC-C-eE------EEEeccCCHHHHH
Confidence 99999875 3 32 2334445555554
No 101
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.8e-05 Score=68.86 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCCeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343 45 EAGVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF 123 (347)
Q Consensus 45 ~~~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~ 123 (347)
+..+--+ |++.+++.+ ++++.-+.++.|.|. |-+. |+.+.|.|.+++-.|. .+.+.|+++|+
T Consensus 123 pe~ikyf~~~q~~deel---~rnk~t~WlIeFfa~----ws~~-Cv~~spvfaeLS~kyn---------~~~lkFGkvDi 185 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEEL---DRNKRTYWLIEFFAC----WSPK-CVRFSPVFAELSIKYN---------NNLLKFGKVDI 185 (265)
T ss_pred chheeeecchhhHHHHh---ccCCceEEEEEEEee----cChh-hcccccccHHHHHHhC---------CCCCcccceee
Confidence 3446677 667777776 444455567777777 7888 8999999999999883 34699999999
Q ss_pred cCCcchHhHcCCCC------CceEEEEcCC
Q 048343 124 KESQSSFALFAVNS------LPHIRLVGPD 147 (347)
Q Consensus 124 ~~~~~lf~~~~I~s------vP~l~~fpp~ 147 (347)
..-+++.++|+|+. .||+.+|..|
T Consensus 186 Grfpd~a~kfris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 186 GRFPDVAAKFRISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred ccCcChHHheeeccCcccccCCeEEEEccc
Confidence 99999999999975 8999999964
No 102
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.93 E-value=3.2e-05 Score=85.98 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=65.8
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE---c---------------------
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE---F--------------------- 123 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD---~--------------------- 123 (347)
...+||.|||+ ||++ |+...|+++++++.|. +.++.+..+. +
T Consensus 420 GK~vll~FWAs----WC~p-C~~e~P~L~~l~~~y~---------~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~p 485 (1057)
T PLN02919 420 GKVVILDFWTY----CCIN-CMHVLPDLEFLEKKYK---------DQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHP 485 (1057)
T ss_pred CCEEEEEEECC----cChh-HHhHhHHHHHHHHHcC---------CCCeEEEEEecccccccccHHHHHHHHHHhCCCcc
Confidence 45799999999 8999 8999999999999873 1235554442 2
Q ss_pred ---cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 124 ---KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 124 ---~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
|.+.++.++|+++++|+.+++.++ |+.. .+..+....+++.+++++.+
T Consensus 486 vv~D~~~~~~~~~~V~~iPt~ilid~~-G~iv------~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 486 VVNDGDMYLWRELGVSSWPTFAVVSPN-GKLI------AQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred EEECCchHHHHhcCCCccceEEEECCC-CeEE------EEEecccCHHHHHHHHHHHH
Confidence 223467889999999999999764 4543 23345566788888887664
No 103
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.88 E-value=7.2e-05 Score=58.65 Aligned_cols=65 Identities=15% Similarity=0.360 Sum_probs=47.7
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----------------------
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----------------------- 126 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----------------------- 126 (347)
.++|.|||+ ||++ |++..|+.+++.+.|.+ ++++-|..+..|+.
T Consensus 3 ~~ll~fwa~----~c~~-c~~~~~~l~~l~~~~~~--------~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (95)
T PF13905_consen 3 PVLLYFWAS----WCPP-CKKELPKLKELYKKYKK--------KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDD 69 (95)
T ss_dssp EEEEEEE-T----TSHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTH
T ss_pred EEEEEEECC----CCHH-HHHHHHHHHHHHHHhCC--------CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcc
Confidence 689999999 8999 89999999999999852 23455555444432
Q ss_pred --cchHhHcCCCCCceEEEEcCC
Q 048343 127 --QSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 127 --~~lf~~~~I~svP~l~~fpp~ 147 (347)
.++.+.++++++|++++..|+
T Consensus 70 ~~~~l~~~~~i~~iP~~~lld~~ 92 (95)
T PF13905_consen 70 NNSELLKKYGINGIPTLVLLDPD 92 (95)
T ss_dssp HHHHHHHHTT-TSSSEEEEEETT
T ss_pred hHHHHHHHCCCCcCCEEEEECCC
Confidence 247788899999999998874
No 104
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.86 E-value=0.00013 Score=68.88 Aligned_cols=110 Identities=10% Similarity=0.114 Sum_probs=74.9
Q ss_pred CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
.|.++++ +.|-+.+. +.+++-.|||.|+-+ .++. |+.+...++.+|..|. .+.|+++..+.
T Consensus 126 ~v~ei~~~e~~l~~ie--~~~~~~~VVVHiY~~----~~~~-C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~ 187 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIE--KESKSTWVVVHIYEP----GFPR-CEIMNSCLECLARKYP-----------EVKFVKIRASK 187 (265)
T ss_dssp SEEE--SHHHHHHHCC--TSSTT-EEEEEEE-T----TSCC-HHHHHHHHHHHHHH-T-----------TSEEEEEEECG
T ss_pred eEEEccChhhHHHHHh--ccCCCcEEEEEEEeC----CCch-HHHHHHHHHHHHHhCC-----------ceEEEEEehhc
Confidence 5899975 78888872 444566899999998 6889 8999999999999872 58999999988
Q ss_pred CcchHhHcCCCCCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR 177 (347)
Q Consensus 126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~ 177 (347)
.+ ....|....+|++++|.. |......-.+ +.......++++..||.++
T Consensus 188 ~~-~~~~f~~~~LPtllvYk~--G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 188 CP-ASENFPDKNLPTLLVYKN--GDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp CC-TTTTS-TTC-SEEEEEET--TEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred cC-cccCCcccCCCEEEEEEC--CEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 66 778899999999999995 4432000011 1112246789998888765
No 105
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.78 E-value=2.5e-05 Score=60.20 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=47.1
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEE
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLV 144 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~f 144 (347)
+..++|.|+|+ ||+. |+.++.++ +++.+.+. ++..+.++|.++...-.+..+ +.+|+++++
T Consensus 17 ~kpvlv~f~a~----wC~~-C~~l~~~~~~~~~v~~~~~----------~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~l 80 (82)
T PF13899_consen 17 GKPVLVDFGAD----WCPP-CKKLEREVFSDPEVQEALN----------KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFL 80 (82)
T ss_dssp TSEEEEEEETT----TTHH-HHHHHHHTTTSHHHHHHHH----------HCSEEEEEETTTHHHHHHHHH-CSSSEEEEE
T ss_pred CCCEEEEEECC----CCHh-HHHHHHHHcCCHHHHHHHH----------CCEEEEEEEcCCCChhHHhCC-ccCCEEEEe
Confidence 44799999998 8999 89999888 55655443 358999999987653222222 679999998
Q ss_pred cC
Q 048343 145 GP 146 (347)
Q Consensus 145 pp 146 (347)
.|
T Consensus 81 dp 82 (82)
T PF13899_consen 81 DP 82 (82)
T ss_dssp ET
T ss_pred CC
Confidence 75
No 106
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.71 E-value=5.7e-05 Score=61.12 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=38.9
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc--CCcchHhHcCCCCCceEE
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK--ESQSSFALFAVNSLPHIR 142 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~--~~~~lf~~~~I~svP~l~ 142 (347)
.++|.|+++ ||++ |++..|+++++++.+.. +-.+. +..|-+ +.++..+++++.+.|++.
T Consensus 23 ~vvl~F~~~----wC~~-C~~~~p~l~~~~~~~~~--------~~~vi-~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 23 PTLLFFLSP----TCPV-CKKLLPVIRSIARAEAD--------WLDVV-LASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred eEEEEEECC----CCcc-hHhHhHHHHHHHHHhcC--------CcEEE-EEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 688999998 8999 89999999998876521 11222 222222 234566677776666653
No 107
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.70 E-value=0.00053 Score=61.41 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------c-----cCCcc
Q 048343 67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------F-----KESQS 128 (347)
Q Consensus 67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------~-----~~~~~ 128 (347)
++..++|.|||+ ||++ |++..|+++++.+.+ +.++.++..| + ....+
T Consensus 73 ~gk~vvl~F~at----wCp~-C~~~lp~l~~~~~~~----------~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (189)
T TIGR02661 73 PGRPTLLMFTAP----SCPV-CDKLFPIIKSIARAE----------ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAE 137 (189)
T ss_pred CCCEEEEEEECC----CChh-HHHHHHHHHHHHHhc----------CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhH
Confidence 344689999998 8999 799999999877543 1234444321 1 12457
Q ss_pred hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343 129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
+.++|+++++|+.+++.++ |... .. ......+++.+.++
T Consensus 138 i~~~y~v~~~P~~~lID~~-G~I~------~~-g~~~~~~~le~ll~ 176 (189)
T TIGR02661 138 IGMAFQVGKIPYGVLLDQD-GKIR------AK-GLTNTREHLESLLE 176 (189)
T ss_pred HHHhccCCccceEEEECCC-CeEE------Ec-cCCCCHHHHHHHHH
Confidence 8889999999999998764 4432 11 11234556666665
No 108
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.58 E-value=0.00058 Score=56.06 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=74.9
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
|-++|.+|++.+. +++-+-. +++|++. . -..+.+.+++||++..+ ..+++.|+.+|.++..
T Consensus 1 ~~e~t~e~~~~~~---~~~~~~~-~l~f~~~-------~-~~~~~~~~~~vAk~~~~-------~kgki~Fv~~d~~~~~ 61 (111)
T cd03072 1 VREITFENAEELT---EEGLPFL-ILFHDKD-------D-LESLKEFKQAVARQLIS-------EKGAINFLTADGDKFR 61 (111)
T ss_pred CcccccccHHHHh---cCCCCeE-EEEecch-------H-HHHHHHHHHHHHHHHHh-------cCceEEEEEEechHhh
Confidence 4578999999987 4433323 3344222 1 37789999999998211 1467999999999988
Q ss_pred chHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 128 SSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 128 ~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
...+.||++. .|.+.+..-. +..+ ..+ .+...++++|.+|+++...
T Consensus 62 ~~~~~fgl~~~~~P~i~i~~~~-~~~K---y~~--~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 62 HPLLHLGKTPADLPVIAIDSFR-HMYL---FPD--FEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred hHHHHcCCCHhHCCEEEEEcch-hcCc---CCC--CccccCHHHHHHHHHHHhc
Confidence 8999999998 9999998742 1111 111 3345789999999988653
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.56 E-value=0.00028 Score=48.75 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=48.3
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh---HcCCCCCceEEEEcCC
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA---LFAVNSLPHIRLVGPD 147 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~---~~~I~svP~l~~fpp~ 147 (347)
++.|++. ||+. |+++.+.++++ +. ..+++.+..+|.++..+..+ .+++.++|+++++.++
T Consensus 1 l~~~~~~----~c~~-c~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAP----WCPF-CQALRPVLAEL--AL---------LNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECC----CChh-HHhhhhHHHHH--Hh---------hCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 3567777 8999 89999999988 22 13478999999998775544 8999999999999874
No 110
>smart00594 UAS UAS domain.
Probab=97.55 E-value=0.00045 Score=57.45 Aligned_cols=105 Identities=11% Similarity=0.176 Sum_probs=68.7
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccC--C
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKE--S 126 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~ 126 (347)
-..+|++.+. ....++..++|+|+++ ||+. |+.+.-+. ++|.+.. +++..+..+|+++ +
T Consensus 12 ~~gs~~~a~~-~Ak~~~K~~lv~~~~~----~c~~-c~~~~r~vl~~~~V~~~i----------~~~fv~~~~dv~~~eg 75 (122)
T smart00594 12 YQGSLEAAKQ-EASRQRRLLWLYLHSQ----DSPD-SQVFNRDVLCNEAVKSLI----------RENFIFWQVDVDTSEG 75 (122)
T ss_pred eeCCHHHHHH-HHHhhcCCEEEEEeCC----CCch-HHHHHHHHccCHHHHHHH----------HcCEEEEEecCCChhH
Confidence 3346666652 1222344799999998 8999 78876542 1222222 2358888899885 4
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
.++.++|++++.|++.++.|..|... -....+..|..+++++++++
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~g~~~--~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRTGQRV--IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCCCcee--EEEeccccCCCCHHHHHHhh
Confidence 58999999999999999988643210 01123345667788888765
No 111
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.55 E-value=0.00038 Score=57.79 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--------------------------
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------------- 123 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------------- 123 (347)
.++|.|+|+ ||++ |++..|+++++.+.+.. +++.+.-++.
T Consensus 25 ~vvl~F~a~----~C~~-C~~~~p~l~~l~~~~~~---------~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 25 VVLLDFWTY----CCIN-CLHTLPYLTDLEQKYKD---------DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred EEEEEEECC----CCcc-HHHHHHHHHHHHHHcCc---------CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 688999998 8999 79999999999998742 1233333321
Q ss_pred -cCCcchHhHcCCCCCceEEEEcCC
Q 048343 124 -KESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 124 -~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
|...++.+.|+++++|+.+++.++
T Consensus 91 ~D~~~~~~~~~~v~~~P~~~vid~~ 115 (126)
T cd03012 91 NDNDYATWRAYGNQYWPALYLIDPT 115 (126)
T ss_pred ECCchHHHHHhCCCcCCeEEEECCC
Confidence 233456777888888988888654
No 112
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.52 E-value=0.00036 Score=58.04 Aligned_cols=81 Identities=6% Similarity=0.080 Sum_probs=51.1
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCC---CCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQ---LHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---- 126 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~---~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---- 126 (347)
++|.+.+.. ....+..+.|+|+++. -+.||+. |+..+|..+++-+.- .++..|..+.+.+.
T Consensus 6 ~~~~~~~~~-~~~~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~----------~~~~~lv~v~VG~r~~Wk 73 (119)
T PF06110_consen 6 DEFEKLVEE-YENSGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKA----------PENARLVYVEVGDRPEWK 73 (119)
T ss_dssp HHHHHHHHC---TTTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-----------STTEEEEEEE---HHHHC
T ss_pred HHHHHHHHH-hhcCCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhC----------CCCceEEEEEcCCHHHhC
Confidence 456666621 1123457888999763 4689999 899999999876541 23678888888542
Q ss_pred --cchHhH---cCCCCCceEEEEcC
Q 048343 127 --QSSFAL---FAVNSLPHIRLVGP 146 (347)
Q Consensus 127 --~~lf~~---~~I~svP~l~~fpp 146 (347)
...|+. ++|++|||++-+..
T Consensus 74 dp~n~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 74 DPNNPFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp -TTSHHHH--CC---SSSEEEECTS
T ss_pred CCCCCceEcceeeeeecceEEEECC
Confidence 257877 99999999999974
No 113
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0022 Score=55.39 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=51.6
Q ss_pred CCCCceEEEEEecCCCCCCChhhcccchHHHHHHHH--HhhhcCCC----CCCCCCceEEEEEEccC---CcchHhHcCC
Q 048343 65 TPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVAS--SFIANNVD----NPSSRGKLFFCYLEFKE---SQSSFALFAV 135 (347)
Q Consensus 65 ~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~--s~~~~~p~----~~~~~~~v~F~~vD~~~---~~~lf~~~~I 135 (347)
.|.+.+.++.|-++ .|.. |.++..+...+-+ +|.+.|=. ..++++.+.|..-|-++ .+++++.|++
T Consensus 39 ~~~~Kylllmfes~----~C~y-C~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 39 SPNDKYLLLMFESN----GCSY-CERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred CccCcEEEEEEcCC----CChH-HHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 45566889999988 7999 7998876654432 33332100 00134456666555433 2489999999
Q ss_pred CCCceEEEEcCC
Q 048343 136 NSLPHIRLVGPD 147 (347)
Q Consensus 136 ~svP~l~~fpp~ 147 (347)
++-||+++|..+
T Consensus 114 rstPtfvFfdk~ 125 (182)
T COG2143 114 RSTPTFVFFDKT 125 (182)
T ss_pred ccCceEEEEcCC
Confidence 999999999854
No 114
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.49 E-value=0.00042 Score=63.57 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=59.0
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc---------CCcchHhHcCCCCCc
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK---------ESQSSFALFAVNSLP 139 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~---------~~~~lf~~~~I~svP 139 (347)
-+-+++|+.+ .|+. |+.+.|..+.+|+.|. =+|+.+.+|=. .++++++++|++.+|
T Consensus 121 ~~gL~~F~~~----~C~~-C~~~~pil~~~~~~yg----------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P 185 (215)
T PF13728_consen 121 KYGLFFFYRS----DCPY-CQQQAPILQQFADKYG----------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP 185 (215)
T ss_pred CeEEEEEEcC----CCch-hHHHHHHHHHHHHHhC----------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence 3567778877 7999 8999999999999871 24666666511 246889999999999
Q ss_pred eEEEEcCCCCCCCCccccccccccccCHHHHHH
Q 048343 140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMAD 172 (347)
Q Consensus 140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~ 172 (347)
++++..|++++. .....|..+.++|.+
T Consensus 186 al~Lv~~~~~~~------~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 186 ALFLVNPNTKKW------YPVSQGFMSLDELED 212 (215)
T ss_pred EEEEEECCCCeE------EEEeeecCCHHHHHH
Confidence 999999864222 112234456666654
No 115
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.45 E-value=0.001 Score=54.70 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=71.3
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
|.++|.+|+..+. .. +. .++++-...+. .-.. -..+.+.+.++|+.+. ++++.|+.+|.++..
T Consensus 1 v~~~~~en~~~~~---~~--~l-~~~~~~~~~~~-~~~~-~~~~~~~~~~vAk~fk---------~gki~Fv~~D~~~~~ 63 (111)
T cd03073 1 VGHRTKDNRAQFT---KK--PL-VVAYYNVDYSK-NPKG-TNYWRNRVLKVAKDFP---------DRKLNFAVADKEDFS 63 (111)
T ss_pred CCeeccchHHHhc---cC--Ce-EEEEEeccccC-ChhH-HHHHHHHHHHHHHHCc---------CCeEEEEEEcHHHHH
Confidence 4578899999885 32 22 33333221000 1122 3678999999999872 147999999999988
Q ss_pred chHhHcCCCC----CceEEEEcCCCCCCCCcccccccccccc-CHHHHHHHHHhh
Q 048343 128 SSFALFAVNS----LPHIRLVGPDAKSLKDDSVQMEQGDFAR-MAESMADFVQSR 177 (347)
Q Consensus 128 ~lf~~~~I~s----vP~l~~fpp~~g~~~~~~~~~~~~~~~~-~a~~l~~fi~~~ 177 (347)
...+.||++. .|.+.+.... + .+ +..+... +++.|.+|+++.
T Consensus 64 ~~l~~fgl~~~~~~~P~~~i~~~~-~-~K------Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 64 HELEEFGLDFSGGEKPVVAIRTAK-G-KK------YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHcCCCcccCCCCEEEEEeCC-C-Cc------cCCCcccCCHHHHHHHHHHh
Confidence 8999999985 9999998742 2 22 1123345 899999999864
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.39 E-value=0.00057 Score=53.17 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-CCcchHhHcC--CCCCceEEEE
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-ESQSSFALFA--VNSLPHIRLV 144 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-~~~~lf~~~~--I~svP~l~~f 144 (347)
+..+++.|+++ ||++ |+...|.++.+++.+. ..+-|..+|.. .+++....++ +..+|++..+
T Consensus 32 ~~~~~v~f~~~----~C~~-C~~~~~~l~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 32 GKPVLVDFWAP----WCPP-CRAEAPLLEELAEEYG----------GDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred CceEEEEEEcC----cCHH-HHhhchhHHHHHHHhc----------CCcEEEEEECCCCChHHHHHHhhhhccCCeEEEE
Confidence 34677777877 9999 8999999999999872 26889999997 7889999999 9999999988
Q ss_pred cCC
Q 048343 145 GPD 147 (347)
Q Consensus 145 pp~ 147 (347)
..+
T Consensus 97 ~~~ 99 (127)
T COG0526 97 KDG 99 (127)
T ss_pred eCc
Confidence 764
No 117
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.35 E-value=0.00072 Score=60.51 Aligned_cols=114 Identities=10% Similarity=0.008 Sum_probs=66.9
Q ss_pred CCCeEEcChhhH--HHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHH-hhhc-CC--CCCC-CCC---
Q 048343 45 EAGVIHLNDQLV--SRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASS-FIAN-NV--DNPS-SRG--- 114 (347)
Q Consensus 45 ~~~VI~L~~~nf--~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s-~~~~-~p--~~~~-~~~--- 114 (347)
++|=+.++++++ +..- .+.-+....+|-|||+ ||++ |+.-.|..+++++. +..+ ++ -+.. +++
T Consensus 36 ~~ge~~~~~~~~~y~~~~--~~~l~GKV~lvn~~As----wc~~-c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~ 108 (184)
T TIGR01626 36 EYGEIVLSGKDTVYQPWG--SAELAGKVRVVHHIAG----RTSA-KEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVG 108 (184)
T ss_pred CCceEEEcCCcccceecc--HHHcCCCEEEEEEEec----CCCh-hhccchHHHHHHHcCCCcccccceEEEECccchhh
Confidence 345566666544 3332 2344566889999999 8999 89999999999753 2110 00 0000 000
Q ss_pred ------------ceE--EEEEEccCCcchHhHcCCCCCceE-EEEcCCCCCCCCccccccccccccCHHHHHH
Q 048343 115 ------------KLF--FCYLEFKESQSSFALFAVNSLPHI-RLVGPDAKSLKDDSVQMEQGDFARMAESMAD 172 (347)
Q Consensus 115 ------------~v~--F~~vD~~~~~~lf~~~~I~svP~l-~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~ 172 (347)
+.- +..+=.|++..+...+|++++|+- +++.+. |... ....|+.+.+++.+
T Consensus 109 ~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~-GkVv------~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 109 TGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKT-GKVK------FVKEGALSDSDIQT 174 (184)
T ss_pred HHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCC-CcEE------EEEeCCCCHHHHHH
Confidence 100 112333455567889999999888 677654 5543 34455556666554
No 118
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.24 E-value=0.0019 Score=54.56 Aligned_cols=67 Identities=12% Similarity=0.247 Sum_probs=43.1
Q ss_pred CCceEEEEEecCCCCCCChhhcccchHHHH---HHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343 67 RPYSILIFFDAHQLHNKPELHLQELRNEFS---LVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL 143 (347)
Q Consensus 67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe---~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~ 143 (347)
++..++|.|++. ||++ |+.++.++- +|++ +. +++....++|.+...+-....+ +.+|++++
T Consensus 22 ~~Kpvmv~f~sd----wC~~-Ck~l~k~~f~~~eV~~-~l---------~~~Fv~V~l~~d~td~~~~~~g-~~vPtivF 85 (130)
T cd02960 22 SNKPLMVIHHLE----DCPH-SQALKKAFAEHKEIQK-LA---------QEDFIMLNLVHETTDKNLSPDG-QYVPRIMF 85 (130)
T ss_pred CCCeEEEEEeCC----cCHh-HHHHHHHhhCCHHHHH-HH---------HhCeEEEEEEeccCCCCcCccC-cccCeEEE
Confidence 345799999998 8999 799988742 2332 21 1235555777763321111244 78999999
Q ss_pred EcCCCCC
Q 048343 144 VGPDAKS 150 (347)
Q Consensus 144 fpp~~g~ 150 (347)
+.|+ |+
T Consensus 86 ld~~-g~ 91 (130)
T cd02960 86 VDPS-LT 91 (130)
T ss_pred ECCC-CC
Confidence 9986 44
No 119
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.24 E-value=0.00058 Score=52.70 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=55.7
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL 151 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~ 151 (347)
+++||.+ +|+. |.+++...+.++. ..++-.-.+|+++++++.++|+. .||.+.+=.+. ..
T Consensus 2 l~l~~k~----~C~L-C~~a~~~L~~~~~------------~~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~--~~ 61 (81)
T PF05768_consen 2 LTLYTKP----GCHL-CDEAKEILEEVAA------------EFPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIR--QF 61 (81)
T ss_dssp EEEEE-S----SSHH-HHHHHHHHHHCCT------------TSTCEEEEEETTTTHHHHHHSCT-STSEEEETT-G--GG
T ss_pred EEEEcCC----CCCh-HHHHHHHHHHHHh------------hcCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcc--cc
Confidence 6788888 8999 7988888776542 23588889999999999999996 89997665432 11
Q ss_pred CCccccccccccccCHHHHHHHHH
Q 048343 152 KDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 152 ~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
. .. .......+.+++.+||+
T Consensus 62 ~---~~-~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 62 K---EQ-EELKWRFDEEQLRAWLE 81 (81)
T ss_dssp C---TS-EEEESSB-HHHHHHHHH
T ss_pred c---cc-ceeCCCCCHHHHHHHhC
Confidence 1 00 11134578999999874
No 120
>KOG3356 consensus Predicted membrane protein [Function unknown]
Probab=97.17 E-value=0.00016 Score=58.89 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=75.2
Q ss_pred cccchhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCc---eEEEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 048343 221 LHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNK---LVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTH 297 (347)
Q Consensus 221 l~~k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~---i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~ 297 (347)
+.++..-..+-++.+++.++|..|..|-.||=++...|..|. +.|.++.-..||-+|+..-|+++..=+++++.|-.
T Consensus 26 lps~mtv~alivvsyflv~~g~iydvivepp~igs~~d~~g~~rpv~fla~rvngqyimeglas~flf~lgglg~imld~ 105 (147)
T KOG3356|consen 26 LPSPMTVYALIVVSYFLVTGGIIYDVIVEPPSIGSMTDEHGHQRPVAFLAGRVNGQYIMEGLASSFLFTLGGLGFIMLDR 105 (147)
T ss_pred CCCchHHHHHHHHHHHHhcccEEEEEEecCCCCCcccccCCcCcceEEEeccccceeeehhhcccceEeecCcEEEEEec
Confidence 345566666777889999999999999999999865543354 46666667999999999999998887777776654
Q ss_pred cc-ccccCccchhHHHHHHHHHHHHHHHHHhhhh--hccC-CC
Q 048343 298 GL-VRVKSVSIQRWVMIVSLLISFWAVNKVIYLD--NWKT-GY 336 (347)
Q Consensus 298 ~~-p~~~~~~~~~~~~~~~~~~~f~~~s~l~s~~--~~K~-~y 336 (347)
.. |++ ++..|+ .++.+++..++.|++++.. ++|- ||
T Consensus 106 a~~~n~--~k~~r~-~~~~~g~~~vlls~~ma~vfmrmklpgy 145 (147)
T KOG3356|consen 106 ANAPNI--PKLNRF-LLLFIGFVCVLLSFFMARVFMRMKLPGY 145 (147)
T ss_pred ccCCCc--HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 22 222 222222 2333345555556665542 4454 55
No 121
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.15 E-value=0.00089 Score=49.09 Aligned_cols=52 Identities=6% Similarity=0.128 Sum_probs=40.3
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRLV 144 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~f 144 (347)
+.+|+++ ||++ |+..++.+++ .++-|..+|++++++ +.+.+++.++|++++.
T Consensus 2 i~lf~~~----~C~~-C~~~~~~l~~----------------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTP----WCPP-CKKAKEYLTS----------------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCC----CChh-HHHHHHHHHH----------------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 4678888 8999 7988766543 146788899987654 5667999999999985
No 122
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.10 E-value=0.0035 Score=55.03 Aligned_cols=107 Identities=10% Similarity=0.018 Sum_probs=64.9
Q ss_pred eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEE--------------------------E
Q 048343 70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYL--------------------------E 122 (347)
Q Consensus 70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~v--------------------------D 122 (347)
.+||.|| ++ ||+. |..-.|+++++++.|.... . .++...+ =
T Consensus 31 ~vvl~F~~~~----~c~~-C~~~l~~l~~~~~~~~~~~---v----~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l 98 (173)
T cd03015 31 WVVLFFYPLD----FTFV-CPTEIIAFSDRYEEFKKLN---A----EVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLL 98 (173)
T ss_pred EEEEEEECCC----CCCc-CHHHHHHHHHHHHHHHHCC---C----EEEEEecCCHHHHHHHHHhhhhhCCccCcceeEE
Confidence 5888888 55 8999 7999999999999885421 0 1111111 1
Q ss_pred ccCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 123 FKESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 123 ~~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
.|...++.+.|++. ..|+.+++.+. |... ... ......++.+++.+.|++.-...--...-|.||.
T Consensus 99 ~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~-G~I~---~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 171 (173)
T cd03015 99 ADPKKKISRDYGVLDEEEGVALRGTFIIDPE-GIIR---HITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWK 171 (173)
T ss_pred ECCchhHHHHhCCccccCCceeeEEEEECCC-CeEE---EEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 23455788889986 57889998875 5432 111 0001235677788888654332212344577774
No 123
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.06 E-value=0.0048 Score=53.90 Aligned_cols=94 Identities=11% Similarity=0.200 Sum_probs=60.7
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC------------------------
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE------------------------ 125 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~------------------------ 125 (347)
.+|++|+++ ||+. |....|++.++.+++.+ .++.|..+..+.
T Consensus 27 ~~ll~f~~t----~Cp~-c~~~~~~l~~l~~~~~~---------~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~ 92 (171)
T cd02969 27 ALVVMFICN----HCPY-VKAIEDRLNRLAKEYGA---------KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFP 92 (171)
T ss_pred EEEEEEECC----CCcc-HHHHHHHHHHHHHHHhh---------CCeEEEEEecCccccccccCHHHHHHHHHHCCCCce
Confidence 688999988 8999 68888999999988742 245555555432
Q ss_pred -----CcchHhHcCCCCCceEEEEcCCCCCCCCcccccc----ccccccCHHHHHHHHHhhcC
Q 048343 126 -----SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME----QGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 126 -----~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~----~~~~~~~a~~l~~fi~~~t~ 179 (347)
...+.+.|++...|+.+++.|+ |+.. -..... .+....+.+++.+-|++.+.
T Consensus 93 ~l~D~~~~~~~~~~v~~~P~~~lid~~-G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 93 YLLDETQEVAKAYGAACTPDFFLFDPD-GKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred EEECCchHHHHHcCCCcCCcEEEECCC-CeEE-EeecccCCcccccccccHHHHHHHHHHHHc
Confidence 2356778999999999999875 4432 011111 11122345666666665544
No 124
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.05 E-value=0.003 Score=59.41 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------CcchHhHcCCCCCce
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------SQSSFALFAVNSLPH 140 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------~~~lf~~~~I~svP~ 140 (347)
+-+++|+.. .|+. |+.+.|..+.+|+.|. =.|..+.+|=.- +...++++|++.+|+
T Consensus 152 ~gL~fFy~~----~C~~-C~~~apil~~fa~~yg----------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 152 YGLFFFYRG----KSPI-SQKMAPVIQAFAKEYG----------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred eeEEEEECC----CCch-hHHHHHHHHHHHHHhC----------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 567777776 6999 8999999999999872 135555555331 145889999999999
Q ss_pred EEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 141 IRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 141 l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
+++..|++++.. ...-|..+.++|.+-+-.
T Consensus 217 l~Lv~~~t~~~~------pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 217 LYLVNPKSQKMS------PLAYGFISQDELKERILN 246 (256)
T ss_pred EEEEECCCCcEE------EEeeccCCHHHHHHHHHH
Confidence 999998643321 122345677777665433
No 125
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.96 E-value=0.0043 Score=52.37 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=77.8
Q ss_pred CeEEcChhhH-HHHhcccCCCCCceEEEEEecCCCCCCChhh-cccchHHHHHHHHHhhhcCCCCCCCCCc-eEEEEEEc
Q 048343 47 GVIHLNDQLV-SRFLTSTKTPRPYSILIFFDAHQLHNKPELH-LQELRNEFSLVASSFIANNVDNPSSRGK-LFFCYLEF 123 (347)
Q Consensus 47 ~VI~L~~~nf-~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~c-C~~l~pefe~vA~s~~~~~p~~~~~~~~-v~F~~vD~ 123 (347)
-|++|++++. ++.. .+ .-..++.|--. ...|..- =.+..+.++++|+.+. ++ +.|+.+|.
T Consensus 3 ~~~~l~~~~~~~~~C---~~--~~~C~i~~l~~--~~d~~~e~~~~~~~~l~~vAk~~k----------gk~i~Fv~vd~ 65 (130)
T cd02983 3 EIIELTSEDVFEETC---EE--KQLCIIAFLPH--ILDCQASCRNKYLEILKSVAEKFK----------KKPWGWLWTEA 65 (130)
T ss_pred ceEEecCHHHHHhhc---cC--CCeEEEEEcCc--cccCCHHHHHHHHHHHHHHHHHhc----------CCcEEEEEEeC
Confidence 4899998766 4454 22 22455555221 1123321 1467889999999883 35 99999999
Q ss_pred cCCcchHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343 124 KESQSSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV 182 (347)
Q Consensus 124 ~~~~~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i 182 (347)
++...+.+.|||.+ .|++.++.+.++ + +..+++..+++.+.+|+++...-+.
T Consensus 66 ~~~~~~~~~fgl~~~~~P~v~i~~~~~~--K-----Y~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 66 GAQLDLEEALNIGGFGYPAMVAINFRKM--K-----FATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred cccHHHHHHcCCCccCCCEEEEEecccC--c-----cccccCccCHHHHHHHHHHHHcCCc
Confidence 99988999999965 999999987421 2 1114567899999999999876544
No 126
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0028 Score=52.31 Aligned_cols=66 Identities=6% Similarity=-0.023 Sum_probs=51.0
Q ss_pred eEEEEEecCC-C---CCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-------chHhHcCC-CC
Q 048343 70 SILIFFDAHQ-L---HNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-------SSFALFAV-NS 137 (347)
Q Consensus 70 ~vvV~fTA~~-~---~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-------~lf~~~~I-~s 137 (347)
.+.|+|+++. + |.|||. |...+|.+.++-+. ...++-|..+|+.+.+ ..=...++ +.
T Consensus 27 ~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~----------ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~ 95 (128)
T KOG3425|consen 27 TIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKH----------APEDVHFVHVYVGNRPYWKDPANPFRKDPGILTA 95 (128)
T ss_pred eEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHh----------CCCceEEEEEEecCCCcccCCCCccccCCCceee
Confidence 3889999986 3 689999 89999999987652 2457999999998753 22334555 99
Q ss_pred CceEEEEcC
Q 048343 138 LPHIRLVGP 146 (347)
Q Consensus 138 vP~l~~fpp 146 (347)
|||++-+..
T Consensus 96 vPTLlrw~~ 104 (128)
T KOG3425|consen 96 VPTLLRWKR 104 (128)
T ss_pred cceeeEEcC
Confidence 999999974
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.88 E-value=0.0016 Score=49.49 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=39.7
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-----chHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-----SSFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-----~lf~~~~I~svP~l~~ 143 (347)
|+.|+++ ||+. |+++++.+++.. . .++..+..+|.++++ .+.+..+..++|++++
T Consensus 1 V~~f~~~----~Cp~-C~~~~~~L~~~~--i----------~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKS----YCPY-CKKAKEILAKLN--V----------KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECC----CChh-HHHHHHHHHHcC--C----------CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 4678888 8999 799998888754 1 123567777776543 2666779999999853
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.80 E-value=0.0022 Score=47.77 Aligned_cols=53 Identities=6% Similarity=0.140 Sum_probs=38.4
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH-----cCCCCCceEEEEcC
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL-----FAVNSLPHIRLVGP 146 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~-----~~I~svP~l~~fpp 146 (347)
+++|+++ ||++ |+.+++.+++.. +-|-.+|++++++..+. ++..++|++ ++..
T Consensus 2 v~ly~~~----~C~~-C~~~~~~L~~~~----------------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~ 59 (77)
T TIGR02200 2 ITVYGTT----WCGY-CAQLMRTLDKLG----------------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFAD 59 (77)
T ss_pred EEEEECC----CChh-HHHHHHHHHHcC----------------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECC
Confidence 5678898 8999 799888765432 33457888877655555 389999998 4653
No 129
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.73 E-value=0.0083 Score=55.81 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=26.7
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
..+||.|||+ ||++ |+.-.|+++++.+.|.
T Consensus 100 K~vvl~FwAs----wCp~-c~~e~p~L~~L~~~~~ 129 (236)
T PLN02399 100 KVLLIVNVAS----KCGL-TSSNYSELSHLYEKYK 129 (236)
T ss_pred CeEEEEEEcC----CCcc-hHHHHHHHHHHHHHHh
Confidence 4789999998 8999 7988999999999884
No 130
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.63 E-value=0.0091 Score=55.90 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------CcchHhHcCCCCCce
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------SQSSFALFAVNSLPH 140 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------~~~lf~~~~I~svP~ 140 (347)
+-+++|+.. .|+. |+++.|..+.+|+.|. =.|.-+.+|=.- +....+++|++.+|+
T Consensus 145 ~GL~fFy~s----~Cp~-C~~~aPil~~fa~~yg----------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PA 209 (248)
T PRK13703 145 YGLMFFYRG----QDPI-DGQLAQVINDFRDTYG----------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPA 209 (248)
T ss_pred ceEEEEECC----CCch-hHHHHHHHHHHHHHhC----------CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccce
Confidence 677888887 6999 8999999999999872 246666665321 224678999999999
Q ss_pred EEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343 141 IRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 141 l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
+++..|++++.. ...-|..+.++|.+-+-
T Consensus 210 l~Lv~~~t~~~~------pv~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 210 LMLVDPKSGSVR------PLSYGFITQDDLAKRFL 238 (248)
T ss_pred EEEEECCCCcEE------EEeeccCCHHHHHHHHH
Confidence 999998753321 12224466777765443
No 131
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.61 E-value=0.0088 Score=54.09 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=26.8
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
..++|.|||+ ||++ |++-.|+++++.+.|.
T Consensus 40 kvvlv~fwAs----wC~~-C~~e~p~L~~l~~~~~ 69 (199)
T PTZ00056 40 KVLMITNSAS----KCGL-TKKHVDQMNRLHSVFN 69 (199)
T ss_pred CEEEEEEECC----CCCC-hHHHHHHHHHHHHHHh
Confidence 3789999998 8999 7999999999999884
No 132
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.58 E-value=0.0044 Score=47.86 Aligned_cols=76 Identities=8% Similarity=0.113 Sum_probs=53.3
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cchHhHcC--CCCCceEEEEc
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QSSFALFA--VNSLPHIRLVG 145 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~lf~~~~--I~svP~l~~fp 145 (347)
++.|+.+ ||+. |++....+++++.++ +++.+..+|+++. .++.+..+ .+++|++++
T Consensus 3 v~iy~~~----~C~~-C~~a~~~L~~l~~~~-----------~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi-- 64 (85)
T PRK11200 3 VVIFGRP----GCPY-CVRAKELAEKLSEER-----------DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV-- 64 (85)
T ss_pred EEEEeCC----CChh-HHHHHHHHHhhcccc-----------cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--
Confidence 5678887 8999 799999999887542 3578889999864 25665555 489999873
Q ss_pred CCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
. |+.. + .-+++.++++++.|
T Consensus 65 ~--g~~i----------g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 65 D--QKHI----------G--GCTDFEAYVKENLG 84 (85)
T ss_pred C--CEEE----------c--CHHHHHHHHHHhcc
Confidence 2 2221 1 24667788777665
No 133
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.56 E-value=0.0094 Score=49.31 Aligned_cols=107 Identities=8% Similarity=0.113 Sum_probs=71.6
Q ss_pred hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--CcchHhH
Q 048343 55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSSFAL 132 (347)
Q Consensus 55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~lf~~ 132 (347)
.|++.+. ....+...++|+++++....||.. |++.-.. ++|.+ +. +++..+...|+++ +.++.+.
T Consensus 5 s~~eAl~-~ak~e~K~llVylhs~~~~~~~~f-c~~~l~~-~~v~~-~l---------n~~fv~w~~dv~~~eg~~la~~ 71 (116)
T cd02991 5 TYSQALN-DAKQELRFLLVYLHGDDHQDTDEF-CRNTLCA-PEVIE-YI---------NTRMLFWACSVAKPEGYRVSQA 71 (116)
T ss_pred cHHHHHH-HHHhhCCEEEEEEeCCCCccHHHH-HHHHcCC-HHHHH-HH---------HcCEEEEEEecCChHHHHHHHH
Confidence 4555542 122234589999999977778999 6654322 22332 22 2358889999985 4589999
Q ss_pred cCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343 133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT 178 (347)
Q Consensus 133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t 178 (347)
+++++.|++.+.-|..++. ....+..|..+++++.+.+++..
T Consensus 72 l~~~~~P~~~~l~~~~~~~----~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 72 LRERTYPFLAMIMLKDNRM----TIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred hCCCCCCEEEEEEecCCce----EEEEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999997643221 22344567788999988887654
No 134
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.45 E-value=0.014 Score=49.26 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-------------------CCcc
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-------------------ESQS 128 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-------------------~~~~ 128 (347)
...++|.||++- ||++ |+.-.|.++++++.|... +-++.....|-+ ++.+
T Consensus 28 gk~~vv~f~~~~---~Cp~-C~~~~p~l~~l~~~~~~~-------~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 96 (146)
T PF08534_consen 28 GKPVVVNFWASA---WCPP-CRKELPYLNELQEKYKDK-------GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGA 96 (146)
T ss_dssp TSEEEEEEESTT---TSHH-HHHHHHHHHHHHHHHHTT-------TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSH
T ss_pred CCeEEEEEEccC---CCCc-chhhhhhHHhhhhhhccC-------ceEEEEecccCCHHHHHHHHhhCCCceEEechHHH
Confidence 336889999973 7999 799999999998887532 112222222211 3457
Q ss_pred hHhHcCCC---------CCceEEEEcCCCCCC
Q 048343 129 SFALFAVN---------SLPHIRLVGPDAKSL 151 (347)
Q Consensus 129 lf~~~~I~---------svP~l~~fpp~~g~~ 151 (347)
+.+++++. .+|+.+++-++ |..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~P~~~lId~~-G~V 127 (146)
T PF08534_consen 97 LAKALGVTIMEDPGNGFGIPTTFLIDKD-GKV 127 (146)
T ss_dssp HHHHTTCEEECCTTTTSSSSEEEEEETT-SBE
T ss_pred HHHHhCCccccccccCCeecEEEEEECC-CEE
Confidence 88999998 99999998875 543
No 135
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.45 E-value=0.0063 Score=52.81 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=51.1
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--------------------- 126 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--------------------- 126 (347)
.+.+.++|.|. ||++ ||+|-|...++=+...++++ .=.|.|+.-|=++.
T Consensus 33 gKvV~lyFsA~----wC~p-CR~FTP~Lk~fYe~l~~~~~-----~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~ 102 (157)
T KOG2501|consen 33 GKVVGLYFSAH----WCPP-CRDFTPILKDFYEELKDNAA-----PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDD 102 (157)
T ss_pred CcEEEEEEEEE----ECCc-hhhCCchHHHHHHHHHhcCC-----ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCH
Confidence 45777889887 9999 89999998887666544321 11366666665432
Q ss_pred --cchHhHcCCCCCceEEEEcCC
Q 048343 127 --QSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 127 --~~lf~~~~I~svP~l~~fpp~ 147 (347)
+++.++|++.++|.+.+..|.
T Consensus 103 ~~~~l~~ky~v~~iP~l~i~~~d 125 (157)
T KOG2501|consen 103 LIQKLSEKYEVKGIPALVILKPD 125 (157)
T ss_pred HHHHHHHhcccCcCceeEEecCC
Confidence 245668999999999999986
No 136
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.38 E-value=0.037 Score=43.27 Aligned_cols=68 Identities=19% Similarity=0.125 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCH
Q 048343 88 LQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMA 167 (347)
Q Consensus 88 C~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a 167 (347)
|.+...+|.++|+..+ +.+.|+.++ +++++++++++. |++.+|.|.. +. ...|++..+.
T Consensus 29 ~~~~~~~f~~~A~~~r----------~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~-~~------~~~y~g~~~~ 87 (97)
T cd02981 29 ESEEYKTFEKVAESLR----------DDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE-EE------PVEYDGEFTE 87 (97)
T ss_pred CcHHHHHHHHHHHhcc----------cCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc-cC------CccCCCCCCH
Confidence 4567899999998863 247777666 456777787765 9999998741 11 1345666778
Q ss_pred HHHHHHHHh
Q 048343 168 ESMADFVQS 176 (347)
Q Consensus 168 ~~l~~fi~~ 176 (347)
+.|.+||..
T Consensus 88 ~~l~~fi~~ 96 (97)
T cd02981 88 ESLVEFIKD 96 (97)
T ss_pred HHHHHHHHh
Confidence 999999864
No 137
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.16 E-value=0.024 Score=50.74 Aligned_cols=95 Identities=9% Similarity=0.114 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcC------CC-CeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 32 DLVSELLNLQSQS------EA-GVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 32 ~~~~~L~~l~~~s------~~-~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
+|.++|.+.+.+. .. ..-++. ..+|=+.+ +... -+|.-|+-+. -.. |+-+...++.+|+.+-
T Consensus 45 qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~--~kS~---kVVcHFY~~~----f~R-CKimDkhLe~LAk~h~ 114 (211)
T KOG1672|consen 45 QRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEV--KKSE---KVVCHFYRPE----FFR-CKIMDKHLEILAKRHV 114 (211)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHh--hcCc---eEEEEEEcCC----Ccc-eehHHHHHHHHHHhcc
Confidence 5555555554322 11 266776 45676666 2333 4888999873 345 8999999999998752
Q ss_pred hcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 104 ANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 104 ~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
.-.|.+||.+..|=+..+++|..+|++.+|..+
T Consensus 115 -----------eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 115 -----------ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred -----------cceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence 358999999999999999999999999999974
No 138
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.15 E-value=0.016 Score=41.53 Aligned_cols=51 Identities=8% Similarity=0.192 Sum_probs=37.1
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~ 143 (347)
|++|+.+ +|+. |+..+..++ + .++-|-.+|+++.+ ++.+..|..++|++++
T Consensus 1 V~vy~~~----~C~~-C~~~~~~L~--------~--------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKP----GCPY-CKKAKEFLD--------E--------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEEST----TSHH-HHHHHHHHH--------H--------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcC----CCcC-HHHHHHHHH--------H--------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5678887 8999 677665542 2 25788999999864 3333349999999986
No 139
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.15 E-value=0.015 Score=44.01 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=45.2
Q ss_pred CChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccc
Q 048343 83 KPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD 162 (347)
Q Consensus 83 ~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~ 162 (347)
+|+. |..+....+++++.. ++-.-..|.++.+++ ++||+.++|++++ . |+. .+.
T Consensus 9 ~C~~-C~~~~~~~~~~~~~~------------~i~~ei~~~~~~~~~-~~ygv~~vPalvI-n---g~~--------~~~ 62 (76)
T PF13192_consen 9 GCPY-CPELVQLLKEAAEEL------------GIEVEIIDIEDFEEI-EKYGVMSVPALVI-N---GKV--------VFV 62 (76)
T ss_dssp SCTT-HHHHHHHHHHHHHHT------------TEEEEEEETTTHHHH-HHTT-SSSSEEEE-T---TEE--------EEE
T ss_pred CCCC-cHHHHHHHHHHHHhc------------CCeEEEEEccCHHHH-HHcCCCCCCEEEE-C---CEE--------EEE
Confidence 6999 798888888887764 245566777777777 9999999999955 2 222 122
Q ss_pred c-ccCHHHHHHHHH
Q 048343 163 F-ARMAESMADFVQ 175 (347)
Q Consensus 163 ~-~~~a~~l~~fi~ 175 (347)
| ..+.+++.+||+
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 3 345677777763
No 140
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.13 E-value=0.031 Score=49.86 Aligned_cols=91 Identities=10% Similarity=0.063 Sum_probs=56.7
Q ss_pred eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-----------------------ccC
Q 048343 70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-----------------------FKE 125 (347)
Q Consensus 70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-----------------------~~~ 125 (347)
.+||.|+ +. ||+. |..-.|++++..+.+.+. +-+++.+..| .|.
T Consensus 33 ~vvl~F~p~~----~cp~-C~~el~~l~~~~~~~~~~-------gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~ 100 (187)
T TIGR03137 33 WSVFFFYPAD----FTFV-CPTELEDLADKYAELKKL-------GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDP 100 (187)
T ss_pred EEEEEEECCC----cCCc-CHHHHHHHHHHHHHHHhc-------CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECC
Confidence 5888888 76 8999 799999999998888532 1123333322 123
Q ss_pred CcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343 126 SQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ 175 (347)
Q Consensus 126 ~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~ 175 (347)
..++.+.||+. ..|+.+++.+. |... . .........+.++++.+.|+
T Consensus 101 ~~~~a~~~gv~~~~~g~~~p~tfiID~~-G~I~-~-~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 101 TGVLTRNFGVLIEEAGLADRGTFVIDPE-GVIQ-A-VEITDNGIGRDASELLRKIK 153 (187)
T ss_pred ccHHHHHhCCcccCCCceeeEEEEECCC-CEEE-E-EEEeCCCCCCCHHHHHHHHH
Confidence 45788899986 46888888764 4432 0 00011112356777777664
No 141
>PLN02412 probable glutathione peroxidase
Probab=96.12 E-value=0.031 Score=48.98 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=26.4
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
..+||.|||+ ||++ |++-.|+++++.+.|.
T Consensus 30 k~vlv~f~a~----~C~~-c~~e~~~l~~l~~~~~ 59 (167)
T PLN02412 30 KVLLIVNVAS----KCGL-TDSNYKELNVLYEKYK 59 (167)
T ss_pred CEEEEEEeCC----CCCC-hHHHHHHHHHHHHHHh
Confidence 3688999998 8999 8988999999999885
No 142
>PRK15000 peroxidase; Provisional
Probab=96.06 E-value=0.039 Score=49.92 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=67.1
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC--------------C---ceEEEEEEccCCcch
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR--------------G---KLFFCYLEFKESQSS 129 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~--------------~---~v~F~~vD~~~~~~l 129 (347)
++|++|++.+ ||+. |..-.|+|.+.++++.+..-. +.+ ++ . ++.|- +-.|.+.++
T Consensus 36 ~vvL~F~p~~---~t~v-C~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fp-llsD~~~~i 110 (200)
T PRK15000 36 TTVLFFWPMD---FTFV-CPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYA-MVADVKREI 110 (200)
T ss_pred EEEEEEECCC---CCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCce-EEECCCcHH
Confidence 7899999976 8999 799999999999988642100 000 00 0 11111 223445678
Q ss_pred HhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC-CCCcccCCCCch
Q 048343 130 FALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL-TVGPIHHPPLLS 192 (347)
Q Consensus 130 f~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~-~i~~i~~p~~~~ 192 (347)
.+.||+. ++|..+++.|. |... .........+++.+++.+.++..--. +. ...-|-||.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~-G~I~--~~~~~~~~~gr~~~eilr~l~al~~~~~~-~~~~p~~w~ 176 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDAN-GIVR--HQVVNDLPLGRNIDEMLRMVDALQFHEEH-GDVCPAQWE 176 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHHhhhHHhc-CCCcCCCCC
Confidence 8889987 68999999875 4542 01111112246778777777542110 01 123477874
No 143
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.94 E-value=0.012 Score=54.65 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=60.6
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHH----hhhcCCC-C--C-----------C-C----------CCc--eE
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASS----FIANNVD-N--P-----------S-S----------RGK--LF 117 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s----~~~~~p~-~--~-----------~-~----------~~~--v~ 117 (347)
-..++.||-+ .|+. |+++.++.+++.+. +....|- + . + | ++. -.
T Consensus 108 k~~I~vFtDp----~Cpy-Ckkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 108 KHVITVFTDI----TCGY-CHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CEEEEEEECC----CChH-HHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4577889988 7999 89999999887541 0011221 0 0 0 0 111 11
Q ss_pred EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 118 FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 118 F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.+..+++++.++.+++||++.|+++ ++.| .. ..|..++++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G--~~---------~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG--TL---------VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC--eE---------eeCCCCHHHHHHHHHHc
Confidence 3455677788999999999999999 6543 22 13557889999998764
No 144
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.86 E-value=0.055 Score=46.19 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=24.7
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
.++|.|++++ ||+. |....+.++++++.+.
T Consensus 32 ~~ll~f~~~~---~~p~-C~~~~~~l~~~~~~~~ 61 (154)
T PRK09437 32 RVLVYFYPKA---MTPG-CTVQACGLRDNMDELK 61 (154)
T ss_pred CEEEEEECCC---CCCc-hHHHHHHHHHHHHHHH
Confidence 5888899875 7888 7888888888888874
No 145
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.85 E-value=0.019 Score=41.82 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=35.7
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc----CCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF----AVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~----~I~svP~l~~ 143 (347)
+++|+++ ||+. |+++.+.+++ .++-|..+|++++++..+++ +..++|++++
T Consensus 2 v~l~~~~----~c~~-c~~~~~~l~~----------------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKP----DCPY-CKATKRFLDE----------------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCC----CChh-HHHHHHHHHH----------------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 4678887 8999 7987665543 13556678888765444433 7899999986
No 146
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.79 E-value=0.03 Score=47.97 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=24.2
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
.++|.|||+ ||+ | +.-.|+++++.+.|.
T Consensus 24 ~vvl~fwat----wC~-C-~~e~p~l~~l~~~~~ 51 (152)
T cd00340 24 VLLIVNVAS----KCG-F-TPQYEGLEALYEKYK 51 (152)
T ss_pred EEEEEEEcC----CCC-c-hHHHHHHHHHHHHhc
Confidence 689999999 898 6 777799999998884
No 147
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.68 E-value=0.021 Score=48.18 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=44.4
Q ss_pred EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343 49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS 128 (347)
Q Consensus 49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~ 128 (347)
.+++++.-+.+- +..+++.++ .|+.+ ||+- |...-|.+.++|+.- .++-+-.+.-|++++
T Consensus 26 ~~l~~~~~~~l~---~~~~~~~il-vi~e~----WCgD-~~~~vP~l~kiae~~-----------p~i~~~~i~rd~~~e 85 (129)
T PF14595_consen 26 FQLSEEQIEKLK---SIQKPYNIL-VITET----WCGD-CARNVPVLAKIAEAN-----------PNIEVRIILRDENKE 85 (129)
T ss_dssp HH--HHHHHHHH---T--S-EEEE-EE--T----T-HH-HHHHHHHHHHHHHH------------TTEEEEEE-HHHHHH
T ss_pred cCCCHHHHHHHH---hcCCCcEEE-EEECC----Cchh-HHHHHHHHHHHHHhC-----------CCCeEEEEEecCChh
Confidence 456776666554 445666544 57777 9999 899999999999852 134444455555544
Q ss_pred hHh---HcCCCCCceEEEEcCC
Q 048343 129 SFA---LFAVNSLPHIRLVGPD 147 (347)
Q Consensus 129 lf~---~~~I~svP~l~~fpp~ 147 (347)
+.. ..|.++||+++++..+
T Consensus 86 l~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 86 LMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp HTTTTTT-SS--SSEEEEE-TT
T ss_pred HHHHHHhCCCeecCEEEEEcCC
Confidence 332 3688999999999753
No 148
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=95.59 E-value=0.075 Score=45.53 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
.+||.|+|+ ||++ |+.-.|+++++.+.|.
T Consensus 24 ~vvv~~~as----~C~~-c~~~~~~l~~l~~~~~ 52 (153)
T TIGR02540 24 VSLVVNVAS----ECGF-TDQNYRALQELHRELG 52 (153)
T ss_pred EEEEEEeCC----CCCc-hhhhHHHHHHHHHHHh
Confidence 578889999 8999 7999999999999984
No 149
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.55 E-value=0.02 Score=43.30 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=37.0
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-c----chHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-Q----SSFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-~----~lf~~~~I~svP~l~~ 143 (347)
|++|+++ ||+. |+.+.+.++++.. +..+..+|.++. . .+-+..|..++|.+++
T Consensus 2 v~~y~~~----~Cp~-C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKS----YCPY-CKRAKSLLKELGV--------------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcC----CCHH-HHHHHHHHHHcCC--------------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 4678887 8999 7988887776432 345666776654 2 3456679999999843
No 150
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.42 E-value=0.076 Score=48.05 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=65.7
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC---------------C-ceEEEEEEccCCcchH
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR---------------G-KLFFCYLEFKESQSSF 130 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~---------------~-~v~F~~vD~~~~~~lf 130 (347)
.++.+|+++ ||+. |..-.+++++..+++.+..-. +.+ ++ + ++-|-. =.|.+.++.
T Consensus 30 vvL~~~p~~----~cp~-C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPl-l~D~~~~ia 103 (202)
T PRK13190 30 VLLFSHPAD----FTPV-CTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPV-IADIDKELA 103 (202)
T ss_pred EEEEEEcCC----CCCC-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEE-EECCChHHH
Confidence 334467887 8999 798889999988888642100 000 00 0 122221 123456889
Q ss_pred hHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 131 ALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 131 ~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
+.||+. ++|+.+++.|+ |... ....+....+++.+++.+.|++..-..=...--|-||.
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~-G~I~--~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~ 168 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPN-QIVR--WMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQ 168 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCC
Confidence 999985 58999999875 4432 11112223467888888888654321101234477774
No 151
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.40 E-value=0.056 Score=44.97 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=25.2
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA 104 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~ 104 (347)
.+++.|++.+ ||+. |....|++.++.+.+.+
T Consensus 25 ~~ll~f~~~~---~cp~-C~~~~~~l~~~~~~~~~ 55 (140)
T cd03017 25 PVVLYFYPKD---DTPG-CTKEACDFRDLYEEFKA 55 (140)
T ss_pred cEEEEEeCCC---CCCc-hHHHHHHHHHHHHHHHH
Confidence 5788888643 8999 89999999999988753
No 152
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.37 E-value=0.053 Score=44.00 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
..++|.|+++. ||+. |+.-.++++++.+.+.+ .++.+.-+..++
T Consensus 26 k~~vl~f~~~~---~c~~-c~~~l~~l~~~~~~~~~---------~~~~vi~is~d~ 69 (124)
T PF00578_consen 26 KPVVLFFWPTA---WCPF-CQAELPELNELYKKYKD---------KGVQVIGISTDD 69 (124)
T ss_dssp SEEEEEEESTT---TSHH-HHHHHHHHHHHHHHHHT---------TTEEEEEEESSS
T ss_pred CcEEEEEeCcc---Cccc-cccchhHHHHHhhhhcc---------ceEEeeeccccc
Confidence 36888888874 8999 79999999999988852 246666666654
No 153
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.32 E-value=0.074 Score=46.22 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=54.2
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccc-cCH
Q 048343 89 QELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMA 167 (347)
Q Consensus 89 ~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a 167 (347)
.+...+|+++|+.+. +.+.|+.++ +++++++++++. |++++|+++. + ....|++. .+.
T Consensus 6 ~~~~~~f~~~A~~~~----------~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~-~------~~~~y~~~~~~~ 64 (184)
T PF13848_consen 6 SELFEIFEEAAEKLK----------GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFD-E------KPVVYDGDKFTP 64 (184)
T ss_dssp SHHHHHHHHHHHHHT----------TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTT-T------SEEEESSSTTSH
T ss_pred cHHHHHHHHHHHhCc----------CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCC-C------CceecccccCCH
Confidence 456789999999873 358888887 667999999999 9999999742 1 12344554 689
Q ss_pred HHHHHHHHhhcCCCC
Q 048343 168 ESMADFVQSRTKLTV 182 (347)
Q Consensus 168 ~~l~~fi~~~t~~~i 182 (347)
++|.+||++..--.+
T Consensus 65 ~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 65 EELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHhccccc
Confidence 999999988754333
No 154
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.30 E-value=0.033 Score=41.54 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=36.5
Q ss_pred EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc---CCCCCceEEE
Q 048343 73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF---AVNSLPHIRL 143 (347)
Q Consensus 73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~---~I~svP~l~~ 143 (347)
.+|+.+ +|+. |+..+.-+++ .++-|-.+|++++++.++++ |..++|.+++
T Consensus 2 ~ly~~~----~Cp~-C~~ak~~L~~----------------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKN----NCVQ-CKMTKKALEE----------------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCC----CCHH-HHHHHHHHHH----------------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 467777 8999 6876655432 25778889999887655555 8889999866
No 155
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.17 E-value=0.097 Score=45.75 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=25.1
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSF 102 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~ 102 (347)
.+||.||++| +|++ |+.-.|++++.++++
T Consensus 46 ~vvl~f~~s~---~cp~-C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 46 RKVLNIFPSI---DTGV-CATSVRKFNQEAAEL 74 (167)
T ss_pred EEEEEEEcCC---CCCc-cHHHHHHHHHHHHHc
Confidence 6899999995 5999 799999999988776
No 156
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.13 E-value=0.15 Score=46.01 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------cc
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------FK 124 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------~~ 124 (347)
.+++.|+++ ||+. |..-.+++.+.++.+.+.. -+++-..+| .|
T Consensus 28 vvlf~~pa~----~cp~-C~~el~~l~~~~~~f~~~g-------v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D 95 (203)
T cd03016 28 GILFSHPAD----FTPV-CTTELGAFAKLAPEFKKRN-------VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIAD 95 (203)
T ss_pred EEEEEecCC----CCCc-CHHHHHHHHHHHHHHHHcC-------CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEEC
Confidence 445567777 8999 7999999999999886431 112222222 12
Q ss_pred CCcchHhHcCCC--------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 125 ESQSSFALFAVN--------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 125 ~~~~lf~~~~I~--------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
.+.++++.||+. ++|..+++.|+ |... ....+....+++.+++.+.|.+.-...-..+--|-||.
T Consensus 96 ~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~-G~I~--~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~ 168 (203)
T cd03016 96 PDREVAKLLGMIDPDAGSTLTVRAVFIIDPD-KKIR--LILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWK 168 (203)
T ss_pred chHHHHHHcCCccccCCCCceeeEEEEECCC-CeEE--EEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCcCCCCC
Confidence 235788889886 24567888764 4432 00111112246778887877553221111445577874
No 157
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.09 E-value=0.037 Score=49.57 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=54.4
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh----h----hcCCCCC--------C-----------CCC----ceE
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF----I----ANNVDNP--------S-----------SRG----KLF 117 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~----~----~~~p~~~--------~-----------~~~----~v~ 117 (347)
-..++.||.+ .|++ |+++.++.+...+.. . ..||++. + .++ ..-
T Consensus 78 ~~~i~~f~D~----~Cp~-C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 78 KRVVYVFTDP----DCPY-CRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CEEEEEEECC----CCcc-HHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 3678888888 7999 899999887411100 0 0000000 0 011 233
Q ss_pred EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 118 FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 118 F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
.+..+++++.++.+++|+++.|+++ ++.+ .. ..|..++++|.+||
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G--~~---------~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADG--RV---------VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCC--eE---------ecCCCCHHHHHhhC
Confidence 5566777788999999999999997 7643 22 13445577776653
No 158
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.07 E-value=0.19 Score=51.88 Aligned_cols=77 Identities=8% Similarity=0.087 Sum_probs=56.5
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+=..|+++.-+++- +-.++.. +-.|.++ .|+. |.+....++++|.. +.+|-+-.+|..+.
T Consensus 99 ~~~~l~~~~~~~i~---~~~~~~~-i~~fv~~----~Cp~-Cp~~v~~~~~~a~~-----------~~~i~~~~id~~~~ 158 (517)
T PRK15317 99 HPPKLDQEVIEQIK---ALDGDFH-FETYVSL----SCHN-CPDVVQALNLMAVL-----------NPNITHTMIDGALF 158 (517)
T ss_pred CCCCCCHHHHHHHH---hcCCCeE-EEEEEcC----CCCC-cHHHHHHHHHHHHh-----------CCCceEEEEEchhC
Confidence 34577777666653 2223433 4456666 6999 78777777777653 23688999999999
Q ss_pred cchHhHcCCCCCceEEE
Q 048343 127 QSSFALFAVNSLPHIRL 143 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~ 143 (347)
+++.++|++.++|++++
T Consensus 159 ~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 159 QDEVEARNIMAVPTVFL 175 (517)
T ss_pred HhHHHhcCCcccCEEEE
Confidence 99999999999999976
No 159
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.01 E-value=0.042 Score=42.70 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=50.1
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cchHhHcCC--CCCceEEEEc
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QSSFALFAV--NSLPHIRLVG 145 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~lf~~~~I--~svP~l~~fp 145 (347)
|+.|+.+ ||+. |++...-++++... ...+.+-.+|+++. +++.+..+- .++|.+++
T Consensus 2 V~vys~~----~Cp~-C~~ak~~L~~~~~~-----------~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi-- 63 (86)
T TIGR02183 2 VVIFGRP----GCPY-CVRAKQLAEKLAIE-----------RADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV-- 63 (86)
T ss_pred EEEEeCC----CCcc-HHHHHHHHHHhCcc-----------cCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--
Confidence 4567777 8999 78887776654422 12477888888743 256666664 89999954
Q ss_pred CCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343 146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL 180 (347)
Q Consensus 146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~ 180 (347)
. |+. -+ ..+++.++++++.++
T Consensus 64 ~--g~~----------ig--G~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 64 D--EKH----------VG--GCTDFEQLVKENFDI 84 (86)
T ss_pred C--CEE----------ec--CHHHHHHHHHhcccc
Confidence 2 221 11 257788888887664
No 160
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.98 E-value=0.17 Score=45.37 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=66.4
Q ss_pred eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCC-------CCCC------C--C--CceEEEEEEccCCcchHh
Q 048343 70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNV-------DNPS------S--R--GKLFFCYLEFKESQSSFA 131 (347)
Q Consensus 70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p-------~~~~------~--~--~~v~F~~vD~~~~~~lf~ 131 (347)
.+|+.|+ +. ||+. |..-.++|++..+++.+..- +... . . .++-|-.+ .|.+.++.+
T Consensus 33 ~vvL~F~P~~----~~p~-C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpll-sD~~~~ia~ 106 (187)
T PRK10382 33 WSVFFFYPAD----FTFV-CPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMI-GDPTGALTR 106 (187)
T ss_pred eEEEEEECCC----CCCc-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEE-EcCchHHHH
Confidence 5788888 66 8999 79989999999888853210 0000 0 0 12322222 234668899
Q ss_pred HcCC----CCC--ceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC-CcccCCCCchh
Q 048343 132 LFAV----NSL--PHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV-GPIHHPPLLSK 193 (347)
Q Consensus 132 ~~~I----~sv--P~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i-~~i~~p~~~~~ 193 (347)
.||+ .++ |+.++..|+ |... .........+++++++.+.|++.--.+- ....-|.||..
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~~-G~I~--~~~~~~~~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~~ 172 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDPQ-GIIQ--AIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKE 172 (187)
T ss_pred HcCCCcccCCceeeEEEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCCc
Confidence 9998 356 999999875 4532 0111111234678888888854321110 01234888864
No 161
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.91 E-value=0.068 Score=38.49 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=35.8
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~ 143 (347)
+++|+++ ||+. |+.+++.+++. ++-|-.+|++++++ +.+..+..++|+++.
T Consensus 2 v~ly~~~----~Cp~-C~~~~~~L~~~----------------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKS----TCPY-CKRAKRLLESL----------------GIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECC----CCHH-HHHHHHHHHHc----------------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 4678887 8999 78877765531 25677889887653 344458889998854
No 162
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.86 E-value=0.07 Score=44.83 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSF 102 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~ 102 (347)
.+|+.||++| +|++ |+.-.|+++++.+++
T Consensus 28 ~vvl~f~~~~---~c~~-C~~e~~~l~~~~~~~ 56 (143)
T cd03014 28 VKVISVFPSI---DTPV-CATQTKRFNKEAAKL 56 (143)
T ss_pred eEEEEEEcCC---CCCc-CHHHHHHHHHHHHhc
Confidence 6899999985 5899 799999999988775
No 163
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.78 E-value=0.17 Score=45.57 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=62.2
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE--------------------------c
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE--------------------------F 123 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD--------------------------~ 123 (347)
.++|+|++.+ ||+. |..-.+++.+.++++.+.. -+++...+| .
T Consensus 38 ~~lL~F~p~~---~~~~-C~~e~~~l~~~~~~f~~~g-------~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~ 106 (199)
T PTZ00253 38 WVVLFFYPLD---FTFV-CPTEIIQFSDSVKRFNELN-------CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLA 106 (199)
T ss_pred EEEEEEEcCC---CCCc-CHHHHHHHHHHHHHHHHcC-------CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEE
Confidence 6788999765 8999 7877789999998885421 122222222 2
Q ss_pred cCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 124 KESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 124 ~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
|...++.+.||+. .+|+.+++.|. |... .........+++.+++.+.|...-...-..+--|.||.
T Consensus 107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~-G~i~--~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~ 178 (199)
T PTZ00253 107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPK-GMLR--QITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWK 178 (199)
T ss_pred CcHhHHHHHcCCcccCCCceEEEEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHhhhhHHhcCCEeCCCCC
Confidence 2345788888885 36888888875 4432 00011112246677777766543221111233466664
No 164
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.71 E-value=0.25 Score=45.26 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=67.0
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-C----------------CCceEEEEEEccCCcch
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-S----------------RGKLFFCYLEFKESQSS 129 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~----------------~~~v~F~~vD~~~~~~l 129 (347)
+.+++.|++. ||+. |..-.++|.+.+++|.+..-. +.+ + +.++-|=.+ .|.+.++
T Consensus 30 ~vVL~~~pa~----~tpv-Ct~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil-~D~~~~v 103 (215)
T PRK13599 30 WFVLFSHPAD----FTPV-CTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVI-ADDLGKV 103 (215)
T ss_pred eEEEEEeCCC----CCCc-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEE-ECCCchH
Confidence 3455677787 8999 799889999999888542100 000 0 012222211 2345678
Q ss_pred HhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC-CcccCCCCch
Q 048343 130 FALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV-GPIHHPPLLS 192 (347)
Q Consensus 130 f~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i-~~i~~p~~~~ 192 (347)
.+.||+. ++|+.+++.|. |... ....+....++..+++.+.|.+. .... ..+--|-||.
T Consensus 104 a~~yg~~~~~~~~~~~R~tfIID~d-G~Ir--~~~~~p~~~gr~~~eilr~l~~l-q~~~~~~~~~p~~w~ 170 (215)
T PRK13599 104 SNQLGMIHPGKGTNTVRAVFIVDDK-GTIR--LIMYYPQEVGRNVDEILRALKAL-QTADQYGVALPEKWP 170 (215)
T ss_pred HHHcCCCccCCCCceeeEEEEECCC-CEEE--EEEEcCCCCCCCHHHHHHHHHHh-hhhhhcCCCcCCCCC
Confidence 9999983 78999999875 4542 01111112346788888888642 2111 2456688884
No 165
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.61 E-value=0.16 Score=45.13 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=23.9
Q ss_pred EEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
++++++|+ ||++ |++-.|+++++.++|.
T Consensus 44 vlv~n~at----wCp~-C~~e~p~l~~l~~~~~ 71 (183)
T PTZ00256 44 IIVVNVAC----KCGL-TSDHYTQLVELYKQYK 71 (183)
T ss_pred EEEEEECC----CCCc-hHHHHHHHHHHHHHHh
Confidence 44566898 8999 8999999999999984
No 166
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.48 E-value=0.059 Score=40.68 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=34.8
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh----HcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA----LFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~----~~~I~svP~l~~ 143 (347)
|++|+.+ +|+. |++.+.-+++ .++-|-.+|++++++..+ ..|..++|++++
T Consensus 1 v~ly~~~----~Cp~-C~~a~~~L~~----------------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKP----YCPY-CTRAKALLSS----------------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecC----CChh-HHHHHHHHHH----------------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3567777 8999 7887766552 135677778887654433 347889999844
No 167
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.46 E-value=0.098 Score=43.77 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=33.0
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
.++++|+++ ||++ |++-.|+++++.+++.+ .++.++-+..++..
T Consensus 26 ~vl~f~~~~----~Cp~-C~~~~~~l~~~~~~~~~---------~~v~vv~V~~~~~~ 69 (149)
T cd02970 26 VVVVFYRGF----GCPF-CREYLRALSKLLPELDA---------LGVELVAVGPESPE 69 (149)
T ss_pred EEEEEECCC----CChh-HHHHHHHHHHHHHHHHh---------cCeEEEEEeCCCHH
Confidence 455556687 8999 79999999999988842 34667777776654
No 168
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.40 E-value=0.096 Score=38.83 Aligned_cols=51 Identities=4% Similarity=0.040 Sum_probs=34.4
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCC-CCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVN-SLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~-svP~l~~ 143 (347)
+++|+.+ +|+. |++.+..+++ .++-|-.+|++++++ +.+..+-. ++|.+++
T Consensus 2 i~ly~~~----~Cp~-C~~ak~~L~~----------------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKP----NCPY-CVRAKALLDK----------------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCC----CChH-HHHHHHHHHH----------------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 4678887 8999 6776554432 246777888887654 34445776 9998853
No 169
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=94.33 E-value=0.17 Score=41.34 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=58.4
Q ss_pred CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
..|.-+++.++++.++ +.+. ..+++|+. +|. .|+- |.+..=..-++.+++ .+.+..+.++-+
T Consensus 8 ~~g~~~vd~~~ld~~l---~~~~--~~vlf~~g-Dp~-r~~E-~~DvaVILPEL~~af----------~~~~~~avv~~~ 69 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFL---AAPG--DAVLFFAG-DPA-RFPE-TADVAVILPELVKAF----------PGRFRGAVVARA 69 (107)
T ss_dssp T-TEEEE-CCCHHHHH---HCCS--CEEEEESS--TT-TSTT-CCHHHHHHHHHHCTS----------TTSEEEEEEEHH
T ss_pred hcCCeeechhhHHHHH---hCCC--cEEEEECC-CCC-cCcc-cccceeEcHHHHHhh----------hCccceEEECch
Confidence 4689999999999998 3322 35555555 554 3556 566444555555554 356788888866
Q ss_pred CCcchHhHcCCCCCceEEEEcCC
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
...++.++||+...|++++|..|
T Consensus 70 ~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 70 AERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp HHHHHHHHHT-TSSSEEEEEETT
T ss_pred hHHHHHHHhCCccCCeEEEEECC
Confidence 77899999999999999999964
No 170
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.26 E-value=0.1 Score=43.55 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=26.6
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA 104 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~ 104 (347)
.++|.|+++ ||+.+|....|+++++++++.+
T Consensus 24 ~~vl~f~~~----~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 24 PVLVYFGYT----HCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred EEEEEEEcC----CCcccCHHHHHHHHHHHHHhhH
Confidence 688999998 8996579999999999998843
No 171
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.22 E-value=0.099 Score=39.76 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=38.3
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---cchHhHcCCCCCceEEE
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---QSSFALFAVNSLPHIRL 143 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---~~lf~~~~I~svP~l~~ 143 (347)
+..-|++|+.+ ||+. |++.+.-++. .++-|-.+|+++. .++.+..|..++|.+++
T Consensus 6 ~~~~V~ly~~~----~Cp~-C~~ak~~L~~----------------~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKP----GCPF-CAKAKATLKE----------------KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECC----CCHh-HHHHHHHHHH----------------cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 44567788888 8999 7877665542 1355667888765 34555678999999964
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.18 E-value=0.46 Score=49.04 Aligned_cols=77 Identities=10% Similarity=0.146 Sum_probs=54.9
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+-.+|+++.-+++- +=.++..+-+ |.++ .|+. |....-..+++|.. + .+|-.-.+|..+.
T Consensus 100 ~~~~l~~~~~~~~~---~~~~~~~i~~-f~~~----~Cp~-Cp~~v~~~~~~a~~----~-------p~i~~~~id~~~~ 159 (515)
T TIGR03140 100 HGPKLDEGIIDRIR---RLNGPLHFET-YVSL----TCQN-CPDVVQALNQMALL----N-------PNISHTMIDGALF 159 (515)
T ss_pred CCCCCCHHHHHHHH---hcCCCeEEEE-EEeC----CCCC-CHHHHHHHHHHHHh----C-------CCceEEEEEchhC
Confidence 44678887776663 2223445444 5555 6999 67666666555543 2 3688888999999
Q ss_pred cchHhHcCCCCCceEEE
Q 048343 127 QSSFALFAVNSLPHIRL 143 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~ 143 (347)
+++.++|++.+||++++
T Consensus 160 ~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFL 176 (515)
T ss_pred HHHHHhcCCcccCEEEE
Confidence 99999999999999986
No 173
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.09 E-value=0.23 Score=51.76 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=65.0
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+-..|+++.-+++- +=.++..+- .|.++ +|+. |.+.....+++|.. ..++-.-.+|.++.
T Consensus 459 ~~~~l~~~~~~~i~---~~~~~~~i~-v~~~~----~C~~-Cp~~~~~~~~~~~~-----------~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 459 PGQPLGEELLEKIK---KITKPVNIK-IGVSL----SCTL-CPDVVLAAQRIASL-----------NPNVEAEMIDVSHF 518 (555)
T ss_pred CCCCCCHHHHHHHH---hcCCCeEEE-EEECC----CCCC-cHHHHHHHHHHHHh-----------CCCceEEEEECccc
Confidence 34577777776663 222344433 45566 7999 67766666666643 13688889999999
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV 174 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi 174 (347)
+++.++|++.++|++++= ++. .+.|..+.+++.+||
T Consensus 519 ~~~~~~~~v~~vP~~~i~----~~~--------~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVVD----DQQ--------VYFGKKTIEEMLELI 554 (555)
T ss_pred HHHHHhCCceecCEEEEC----CEE--------EEeeCCCHHHHHHhh
Confidence 999999999999999872 221 123444778887775
No 174
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.025 Score=51.76 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcC
Q 048343 67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGP 146 (347)
Q Consensus 67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp 146 (347)
++...++.|+|. ||.. |+++...++.+|+.. + ++.|++.|.++.+++...+.++.+|+...+.-
T Consensus 16 ~~~~~~~~f~a~----wa~~-~~q~~~v~~~~~~~~-~----------~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~ 79 (227)
T KOG0911|consen 16 KGKLLVLHFWAI----WAVV-QKQMDQVFDHLAEYF-K----------NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFL 79 (227)
T ss_pred ccchhhhhhhhh----hhhh-hhhHHHHHHHHHHhh-h----------hheeeeehhhhhhHHHHHHHHhcCceeeeeec
Confidence 455788999999 8999 899999999999865 2 58999999999999999999999999999964
Q ss_pred C
Q 048343 147 D 147 (347)
Q Consensus 147 ~ 147 (347)
+
T Consensus 80 ~ 80 (227)
T KOG0911|consen 80 G 80 (227)
T ss_pred c
Confidence 3
No 175
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.76 E-value=0.11 Score=40.07 Aligned_cols=51 Identities=6% Similarity=0.077 Sum_probs=36.9
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH---hHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF---ALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf---~~~~I~svP~l~~ 143 (347)
+.+||.+ +|+. |+..+..+++ .++-|-.+|++++++.. +..|.+++|.+++
T Consensus 3 v~lYt~~----~Cp~-C~~ak~~L~~----------------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRN----DCVQ-CHATKRAMES----------------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCC----CCHh-HHHHHHHHHH----------------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 5678887 8999 6876655432 25788899999877543 3457789999965
No 176
>PRK13189 peroxiredoxin; Provisional
Probab=93.66 E-value=0.42 Score=43.98 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=64.2
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC----------------CceEEEEEEccCCcch
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR----------------GKLFFCYLEFKESQSS 129 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~----------------~~v~F~~vD~~~~~~l 129 (347)
+.++++|++. ||+. |..-.++|.+.++.+.+..-. +.+ ++ .++-|-. =.|.+.++
T Consensus 37 ~vvL~f~pa~----fcpv-C~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPl-lsD~~~~i 110 (222)
T PRK13189 37 WFVLFSHPAD----FTPV-CTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPI-IADDRGEI 110 (222)
T ss_pred eEEEEEeCCC----CCCC-CHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeE-EEcCccHH
Confidence 4455567787 8999 798889999999888542100 000 00 0122211 11234578
Q ss_pred HhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 130 FALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 130 f~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
++.||+. ++|+.++..|. |... .........+++.+++.+.|++.....--...-|-||.
T Consensus 111 a~~ygv~~~~~~~~~~r~tfIID~~-G~Ir--~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~p~~w~ 177 (222)
T PRK13189 111 AKKLGMISPGKGTNTVRAVFIIDPK-GIIR--AILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWP 177 (222)
T ss_pred HHHhCCCccccCCCceeEEEEECCC-CeEE--EEEecCCCCCCCHHHHHHHHHHhhhHhhcCcCcCCCCC
Confidence 8899976 57899999875 4432 11111122356777887877643211101234577875
No 177
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.56 E-value=0.8 Score=41.44 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCC-CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCC
Q 048343 33 LVSELLNLQSQSEA-GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPS 111 (347)
Q Consensus 33 ~~~~L~~l~~~s~~-~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~ 111 (347)
|.+++.+.+.+++= .|.+++..+|-+-|+ .....-+|||-++.. +-+. |+-+.-.++.+|..|.
T Consensus 77 Rl~E~r~~~~k~kfG~V~~ISg~dyv~EVT--~As~gvwVvvhLy~~----gvp~-c~Ll~~~l~~la~kfp-------- 141 (240)
T KOG3170|consen 77 RLAEWRATAEKAKFGEVFPISGPDYVKEVT--KASEGVWVVVHLYKQ----GVPL-CALLSHHLQSLACKFP-------- 141 (240)
T ss_pred HHHHHHHHHHHhcccceeeccchHHHHHHH--hccCccEEEEEeecc----ccHH-HHHHHHHHHHHhhcCC--------
Confidence 34455554544433 399999999998884 555677888888887 6788 7999999999998872
Q ss_pred CCCceEEEEEEccCC-cchHhHcCCCCCceEEEEcCCCCCCCCccccc---ccccc-ccCHHHHHHHHHhh
Q 048343 112 SRGKLFFCYLEFKES-QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQM---EQGDF-ARMAESMADFVQSR 177 (347)
Q Consensus 112 ~~~~v~F~~vD~~~~-~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~---~~~~~-~~~a~~l~~fi~~~ 177 (347)
.+.|+++=.+.. ++ |-=.+.||+++|-- |..+ .++ -...| ..+.++++.++-+.
T Consensus 142 ---~iKFVki~at~cIpN----YPe~nlPTl~VY~~--G~lk---~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 142 ---QIKFVKIPATTCIPN----YPESNLPTLLVYHH--GALK---KQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ---cceEEecccccccCC----CcccCCCeEEEeec--chHH---hheehhhhhcCCcCCHHHHHHHHHhc
Confidence 578888765542 22 34458999999975 4443 222 11121 36788998777654
No 178
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.22 E-value=0.49 Score=43.20 Aligned_cols=109 Identities=15% Similarity=0.198 Sum_probs=74.2
Q ss_pred CeEEcCh-hhHHHHhcccCCC-CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343 47 GVIHLND-QLVSRFLTSTKTP-RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK 124 (347)
Q Consensus 47 ~VI~L~~-~nf~~lv~~~~~~-R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~ 124 (347)
.|+++++ +.|-+-+ .+. .-+.++|..+-+ +-+- |..+.....-+|..| ..+.|+++--+
T Consensus 139 ~V~El~~gkqfld~i---dke~ks~~i~VhIYEd----gi~g-cealn~~~~cLAAey-----------P~vKFckikss 199 (273)
T KOG3171|consen 139 FVYELETGKQFLDTI---DKELKSTTIVVHIYED----GIKG-CEALNSSLTCLAAEY-----------PIVKFCKIKSS 199 (273)
T ss_pred eEEEeccchhHHHHH---hcccceEEEEEEEecC----CCch-HHHHhhhHHHhhccC-----------CceeEEEeeec
Confidence 4999987 4777776 333 457778888887 4556 688888888888765 26899998766
Q ss_pred CCcchHhHcCCCCCceEEEEcCCCCCCCCcc-ccccccccccCHHHHHHHHHhh
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDS-VQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~-~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.. ..-.+|.++.+|++++|+. |+..... ..-.+......+.++.+|+++.
T Consensus 200 ~~-gas~~F~~n~lP~LliYkg--GeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 200 NT-GASDRFSLNVLPTLLIYKG--GELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cc-cchhhhcccCCceEEEeeC--CchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 43 4467899999999999985 3432011 0112222235577788888875
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.96 E-value=0.22 Score=39.88 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=32.6
Q ss_pred EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc---h----HhHcCCCCCceEE
Q 048343 71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS---S----FALFAVNSLPHIR 142 (347)
Q Consensus 71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~---l----f~~~~I~svP~l~ 142 (347)
-|+.|+.+ ||+. |++.+.-+++ .++-|..+|+++.++ . -+.-|-+++|.++
T Consensus 9 ~Vvvysk~----~Cp~-C~~ak~~L~~----------------~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 9 AVVIFSRS----SCCM-CHVVKRLLLT----------------LGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred CEEEEECC----CCHH-HHHHHHHHHH----------------cCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 46778887 8999 6876553332 134556778876532 3 2233678999984
No 180
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.84 E-value=0.4 Score=36.30 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=40.1
Q ss_pred EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--cCC------------------------
Q 048343 73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF--KES------------------------ 126 (347)
Q Consensus 73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~--~~~------------------------ 126 (347)
.+|+.+ .|+. |..+.|.++++.+.. .+++.+....+ ...
T Consensus 2 ~~f~d~----~Cp~-C~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (98)
T cd02972 2 VEFFDP----LCPY-CYLFEPELEKLLYAD----------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEAL 66 (98)
T ss_pred eEEECC----CCHh-HHhhhHHHHHHHhhc----------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHH
Confidence 456776 7999 899999999987322 23444444433 222
Q ss_pred ------cchHhHcCCCCCceEEEEc
Q 048343 127 ------QSSFALFAVNSLPHIRLVG 145 (347)
Q Consensus 127 ------~~lf~~~~I~svP~l~~fp 145 (347)
.+.++++|++++|++++..
T Consensus 67 ~~~l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 67 HEALADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEECC
Confidence 2467889999999999864
No 181
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.42 E-value=0.34 Score=35.98 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=35.8
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~ 143 (347)
+++|+.+ +|+. |+..+.-+++ .++-|-.+|+++++ ++.+..+-.++|++++
T Consensus 3 v~ly~~~----~C~~-C~ka~~~L~~----------------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRL----GCED-CTAVRLFLRE----------------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecC----CChh-HHHHHHHHHH----------------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5677777 8999 6776554442 24667788998765 4566668889999954
No 182
>PRK13191 putative peroxiredoxin; Provisional
Probab=92.35 E-value=0.71 Score=42.24 Aligned_cols=109 Identities=7% Similarity=0.048 Sum_probs=62.7
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------c
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------F 123 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------~ 123 (347)
+.++++|+++ ||+. |..-.++|++.+++|.+.. -+|+-..+| .
T Consensus 35 ~vvLff~pa~----ftpv-C~tEl~~l~~~~~ef~~~g-------~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPlls 102 (215)
T PRK13191 35 WFVLFSHPGD----FTPV-CTTEFYSFAKKYEEFKKLN-------TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIA 102 (215)
T ss_pred cEEEEEeCCC----CCCc-CHHHHHHHHHHHHHHHHCC-------CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEE
Confidence 3444467777 8999 7988899999999886421 112211111 1
Q ss_pred cCCcchHhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 124 KESQSSFALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 124 ~~~~~lf~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
|.+.++.++||+- ++|..+++.|. |... ....+....+++.+++.+.|...-...--...-|-||.
T Consensus 103 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~~-G~Ir--~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~P~~w~ 175 (215)
T PRK13191 103 DPMGNVAKRLGMIHAESSTATVRAVFIVDDK-GTVR--LILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANWP 175 (215)
T ss_pred CCchHHHHHcCCcccccCCceeEEEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 2235777888863 47888888875 4432 01111112357888888888653211101233477775
No 183
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=92.34 E-value=1 Score=42.59 Aligned_cols=113 Identities=16% Similarity=0.042 Sum_probs=63.7
Q ss_pred eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC-----------------CceEE-EEEEccCCc
Q 048343 70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR-----------------GKLFF-CYLEFKESQ 127 (347)
Q Consensus 70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~-----------------~~v~F-~~vD~~~~~ 127 (347)
.+|++|+ +. ||+. |..-.|+|++..++|.+..-+ +.+ |+ .++-| .-.| .+.
T Consensus 100 ~vVL~FyPa~----ftpv-Ct~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD--~~~ 172 (261)
T PTZ00137 100 YGLLVFYPLD----FTFV-CPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSD--ISR 172 (261)
T ss_pred eEEEEEECCC----CCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEc--CCh
Confidence 4666666 55 9999 799999999999888642100 000 00 12222 2222 346
Q ss_pred chHhHcCCC-----CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343 128 SSFALFAVN-----SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS 192 (347)
Q Consensus 128 ~lf~~~~I~-----svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~ 192 (347)
++.+.||+. +.|..++..|. |... .........+++.+++.+-|....-..-....-|.||.
T Consensus 173 ~iakayGv~~~~g~a~R~tFIID~d-G~I~--~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~ 239 (261)
T PTZ00137 173 EVSKSFGLLRDEGFSHRASVLVDKA-GVVK--HVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWK 239 (261)
T ss_pred HHHHHcCCCCcCCceecEEEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCC
Confidence 789999985 58999999875 5542 01111112356788877777533210000122377775
No 184
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.30 E-value=0.36 Score=35.70 Aligned_cols=50 Identities=6% Similarity=0.098 Sum_probs=33.8
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc---hHhHcCCCCCceEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS---SFALFAVNSLPHIR 142 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~---lf~~~~I~svP~l~ 142 (347)
+++|+.+ +|+. |+..+.-+++ .++-|-.+|++++.+ +-+..|..++|.++
T Consensus 3 v~lys~~----~Cp~-C~~ak~~L~~----------------~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if 55 (72)
T cd03029 3 VSLFTKP----GCPF-CARAKAALQE----------------NGISYEEIPLGKDITGRSLRAVTGAMTVPQVF 55 (72)
T ss_pred EEEEECC----CCHH-HHHHHHHHHH----------------cCCCcEEEECCCChhHHHHHHHhCCCCcCeEE
Confidence 5678887 8999 6877554442 145677888886542 33345889999984
No 185
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=92.28 E-value=0.96 Score=36.55 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=61.2
Q ss_pred hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--CcchHh
Q 048343 54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSSFA 131 (347)
Q Consensus 54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~lf~ 131 (347)
.+|+.++ .. |+ -++|+|+.+.... ...-..|.++|+... +.=..+.+|+.+ .+++++
T Consensus 10 KdfKKLL---RT-r~-NVLvLy~ks~k~a------~~~Lk~~~~~A~~vk----------G~gT~~~vdCgd~e~kKLCK 68 (112)
T cd03067 10 KDFKKLL---RT-RN-NVLVLYSKSAKSA------EALLKLLSDVAQAVK----------GQGTIAWIDCGDSESRKLCK 68 (112)
T ss_pred HHHHHHH---hh-cC-cEEEEEecchhhH------HHHHHHHHHHHHHhc----------CceeEEEEecCChHHHHHHH
Confidence 6899987 33 22 4778887763111 222346777777652 345677888887 679999
Q ss_pred HcCCC----CCc-eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 132 LFAVN----SLP-HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 132 ~~~I~----svP-~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
++++. --| .+.||++| +- ...|+...+...|.+|+++
T Consensus 69 KlKv~~~~kp~~~~LkHYKdG--~f------HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 69 KLKVDPSSKPKPVELKHYKDG--DF------HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred HHccCCCCCCCcchhhcccCC--Cc------cccccchhhHHHHHHHhhC
Confidence 99999 444 46677764 21 1345666778889999865
No 186
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=92.25 E-value=0.42 Score=39.53 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=24.6
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
.++|.|+... ||+. |..-.|++.++++.+.
T Consensus 24 ~~ll~f~~~~---~c~~-C~~~~~~l~~~~~~~~ 53 (140)
T cd02971 24 WVVLFFYPKD---FTPV-CTTELCAFRDLAEEFA 53 (140)
T ss_pred eEEEEEeCCC---CCCc-CHHHHHHHHHHHHHHH
Confidence 5788888432 8999 7999999999999884
No 187
>PRK10638 glutaredoxin 3; Provisional
Probab=91.68 E-value=0.4 Score=36.65 Aligned_cols=51 Identities=6% Similarity=0.086 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL 143 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~ 143 (347)
+++|+.+ +|+. |++.+..+++ .++-|..+|+++++ ++.+.-+..++|.+++
T Consensus 4 v~ly~~~----~Cp~-C~~a~~~L~~----------------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKA----TCPF-CHRAKALLNS----------------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECC----CChh-HHHHHHHHHH----------------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5667776 8999 7877665542 13567778887654 4456668899998854
No 188
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=91.40 E-value=0.39 Score=40.33 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=23.5
Q ss_pred eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
.++|.|+ ++ ||+. |..-.|+++++++++.
T Consensus 30 ~~vl~f~~~~----~c~~-C~~~~~~l~~~~~~~~ 59 (149)
T cd03018 30 PVVLVFFPLA----FTPV-CTKELCALRDSLELFE 59 (149)
T ss_pred eEEEEEeCCC----CCcc-HHHHHHHHHHHHHHHH
Confidence 4566565 77 8999 7999999999998874
No 189
>PHA03050 glutaredoxin; Provisional
Probab=91.24 E-value=0.51 Score=38.46 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=35.2
Q ss_pred EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---C----cchHhHcCCCCCceEEE
Q 048343 71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---S----QSSFALFAVNSLPHIRL 143 (347)
Q Consensus 71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---~----~~lf~~~~I~svP~l~~ 143 (347)
-|+.|+.+ |||. |+....-++...- ..--|-.+|+++ + .++-+.-|-++||.+++
T Consensus 14 ~V~vys~~----~CPy-C~~ak~~L~~~~i-------------~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 14 KVTIFVKF----TCPF-CRNALDILNKFSF-------------KRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CEEEEECC----CChH-HHHHHHHHHHcCC-------------CcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 46778888 8999 7877655543210 001466777775 2 14566678899999955
No 190
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=91.02 E-value=2.3 Score=34.05 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=58.7
Q ss_pred hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH
Q 048343 53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL 132 (347)
Q Consensus 53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~ 132 (347)
.++.++++ .. .+..+|-+|.... .+....|.++|+..+. +..|+... +.+++++
T Consensus 8 ~~~l~~f~---~~-~~~~Vvg~f~~~~---------~~~~~~F~~vA~~~R~----------d~~F~~~~---~~~~~~~ 61 (104)
T cd03069 8 EAEFEKFL---SD-DDASVVGFFEDED---------SKLLSEFLKAADTLRE----------SFRFAHTS---DKQLLEK 61 (104)
T ss_pred HHHHHHHh---cc-CCcEEEEEEcCCC---------chHHHHHHHHHHhhhh----------cCEEEEEC---hHHHHHh
Confidence 35677776 22 3445555665542 3457899999998743 35665433 3466788
Q ss_pred cCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
+++ -|++.+|.|.. -++...+....|+|..+.+.|.+||...
T Consensus 62 ~~~--~~~ivl~~p~~-~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 62 YGY--GEGVVLFRPPR-LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCC--CCceEEEechh-hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 888 68899997631 0000112223356666789999999864
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.99 E-value=1.1 Score=46.71 Aligned_cols=60 Identities=25% Similarity=0.217 Sum_probs=49.5
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEc
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVG 145 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fp 145 (347)
..+++|+.+ .|+. |.+++.-.+++|. . ++++-+-..|..++++.+++|+++.+|++.+..
T Consensus 368 v~l~~~~~~----~~~~-~~e~~~~l~e~~~-~----------s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~ 427 (555)
T TIGR03143 368 VTLLLFLDG----SNEK-SAELQSFLGEFAS-L----------SEKLNSEAVNRGEEPESETLPKITKLPTVALLD 427 (555)
T ss_pred EEEEEEECC----Cchh-hHHHHHHHHHHHh-c----------CCcEEEEEeccccchhhHhhcCCCcCCEEEEEe
Confidence 456778876 5888 7888887777773 2 468888889999999999999999999999985
No 192
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=90.80 E-value=0.86 Score=37.09 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=51.1
Q ss_pred ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----
Q 048343 52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---- 127 (347)
Q Consensus 52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---- 127 (347)
+.+++++++ +...+..++++=-++ .|+. ..+...+|++.++.- .+++-++.+|+-+.+
T Consensus 6 t~eql~~i~---~~S~~~~~~iFKHSt----~C~I-S~~a~~~~e~~~~~~----------~~~~~~y~l~v~~~R~vSn 67 (105)
T PF11009_consen 6 TEEQLEEIL---EESKEKPVLIFKHST----RCPI-SAMALREFEKFWEES----------PDEIPVYYLDVIEYRPVSN 67 (105)
T ss_dssp SHHHHHHHH---HH---SEEEEEEE-T----T-HH-HHHHHHHHHHHHHHH----------T----EEEEEGGGGHHHHH
T ss_pred CHHHHHHHH---HhcccCcEEEEEeCC----CChh-hHHHHHHHHHHhhcC----------CccceEEEEEEEeCchhHH
Confidence 346788887 332344566555565 7999 899999999877653 223889999999865
Q ss_pred chHhHcCCCC-CceEEEEcCC
Q 048343 128 SSFALFAVNS-LPHIRLVGPD 147 (347)
Q Consensus 128 ~lf~~~~I~s-vP~l~~fpp~ 147 (347)
.++++|||+. =|.++++..|
T Consensus 68 ~IAe~~~V~HeSPQ~ili~~g 88 (105)
T PF11009_consen 68 AIAEDFGVKHESPQVILIKNG 88 (105)
T ss_dssp HHHHHHT----SSEEEEEETT
T ss_pred HHHHHhCCCcCCCcEEEEECC
Confidence 7899999998 8999999964
No 193
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.33 E-value=1.4 Score=36.90 Aligned_cols=108 Identities=13% Similarity=0.176 Sum_probs=71.7
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
+..+|+-|--. |-+. |-.+....++.|+.. ++-...+-+|+++-++.-+.|++...|++++|=.+
T Consensus 23 ~rlvViRFGr~----~Dp~-C~~mD~~L~~i~~~v----------snfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 23 ERLVVIRFGRD----WDPT-CMKMDELLSSIAEDV----------SNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred ceEEEEEecCC----CCch-HhhHHHHHHHHHHHH----------hhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 44677778776 7888 799999999999875 23478889999999999999999999999998753
Q ss_pred CCCCCCcc--cccccccc-ccCHHHHHHHHHh-----hcCCCCCcccCCCCchh
Q 048343 148 AKSLKDDS--VQMEQGDF-ARMAESMADFVQS-----RTKLTVGPIHHPPLLSK 193 (347)
Q Consensus 148 ~g~~~~~~--~~~~~~~~-~~~a~~l~~fi~~-----~t~~~i~~i~~p~~~~~ 193 (347)
. ..+-+. ......++ -.+.+++.+-+.. +-|. +-+..|.||+.
T Consensus 88 k-HmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGK--giV~sP~dy~~ 138 (142)
T KOG3414|consen 88 K-HMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGK--GIVQSPKDYST 138 (142)
T ss_pred c-eEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCC--eEEECCcchHh
Confidence 2 111000 00011122 2456777776643 2232 23566878764
No 194
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.05 E-value=0.92 Score=35.36 Aligned_cols=56 Identities=7% Similarity=0.092 Sum_probs=34.8
Q ss_pred eEEEEEecC-CCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343 70 SILIFFDAH-QLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL 143 (347)
Q Consensus 70 ~vvV~fTA~-~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~ 143 (347)
.++| |+.. ....||+. |+..+.-++. .++-|-.+|+++++ .+.+.-|-+++|.+++
T Consensus 9 ~vvv-f~k~~~~~~~Cp~-C~~ak~~L~~----------------~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 9 PVVL-FMKGTPEEPRCGF-SRKVVQILNQ----------------LGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CEEE-EEcCCCCCCCCcH-HHHHHHHHHH----------------cCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 3444 5432 23458999 6766544332 13678888887665 3455568889999854
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=0.88 Score=34.86 Aligned_cols=52 Identities=4% Similarity=0.077 Sum_probs=35.2
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-----chHhHc-CCCCCceEEEE
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-----SSFALF-AVNSLPHIRLV 144 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-----~lf~~~-~I~svP~l~~f 144 (347)
++.||-+ +||. |+....-.+ . ..+-|..+|+++.. +..++. |-+++|.+++=
T Consensus 3 v~iyt~~----~CPy-C~~ak~~L~--------~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 3 VTIYTKP----GCPY-CKRAKRLLD--------R--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEEECC----CCch-HHHHHHHHH--------H--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 4567776 7999 676544332 1 25777888888654 445555 79999999873
No 196
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=88.54 E-value=6.5 Score=31.13 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=60.0
Q ss_pred eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
+.++ +.++.++++ +...+-.+|-+|.... .+....|.++|+..+. ...|+.. .+
T Consensus 2 v~~i~~~~~~e~~~---~~~~~~~Vvg~f~~~~---------~~~~~~F~~vA~~~R~----------d~~F~~~---~~ 56 (102)
T cd03066 2 VEIINSERELQAFE---NIEDDIKLIGYFKSED---------SEHYKAFEEAAEEFHP----------YIKFFAT---FD 56 (102)
T ss_pred ceEcCCHHHHHHHh---cccCCeEEEEEECCCC---------CHHHHHHHHHHHhhhc----------CCEEEEE---Cc
Confidence 4556 345588887 3123545555665542 3456799999998742 3455332 23
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCcccccccc-ccccCHHHHHHHHHhh
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG-DFARMAESMADFVQSR 177 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~-~~~~~a~~l~~fi~~~ 177 (347)
+++.+.+++. -|.+.++++. .+. ...| ++..+.+.|.+||+..
T Consensus 57 ~~~~~~~~~~-~~~i~l~~~~-~e~------~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 57 SKVAKKLGLK-MNEVDFYEPF-MEE------PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred HHHHHHcCCC-CCcEEEeCCC-CCC------CcccCCCCCCHHHHHHHHHHh
Confidence 4667777775 6999999862 111 1234 5567899999999754
No 197
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=87.07 E-value=4.8 Score=32.52 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.9
Q ss_pred EEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 49 IHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 49 I~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
.++ +.++.++++ ....+..+|.+|.... .+....|.++|+..+ ++..|+... +.
T Consensus 3 ~~i~s~~ele~f~---~~~~~~~VVG~F~~~~---------~~~~~~F~~vA~~~R----------dd~~F~~t~---~~ 57 (107)
T cd03068 3 KQLQTLKQVQEFL---RDGDDVIIIGVFSGEE---------DPAYQLYQDAANSLR----------EDYKFHHTF---DS 57 (107)
T ss_pred eEcCCHHHHHHHH---hcCCCEEEEEEECCCC---------CHHHHHHHHHHHhcc----------cCCEEEEEC---hH
Confidence 445 335577776 2221445555665542 245678999998864 245664432 34
Q ss_pred chHhHcCCCCCceEEEEcCCCCCCCCccccccccccc-cCHHH-HHHHHHh
Q 048343 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMAES-MADFVQS 176 (347)
Q Consensus 128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a~~-l~~fi~~ 176 (347)
++++++++. -|.+.+|.|..=..+ .++....|++. .+.++ |.+||++
T Consensus 58 ~~~~~~~~~-~~~vvl~rp~~~~~k-~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 58 EIFKSLKVS-PGQLVVFQPEKFQSK-YEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHHhcCCC-CCceEEECcHHHhhh-cCcceeeeeccccchHHHHHHHHhc
Confidence 677888886 577777776421111 22223344443 35545 9999976
No 198
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=86.20 E-value=1.5 Score=39.15 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=24.4
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
..++|.|||+ ||+. |++ .|+++++.+.|.
T Consensus 26 KvvLVvf~AS----~C~~-~~q-~~~L~~L~~~y~ 54 (183)
T PRK10606 26 NVLLIVNVAS----KCGL-TPQ-YEQLENIQKAWA 54 (183)
T ss_pred CEEEEEEEeC----CCCC-cHH-HHHHHHHHHHHh
Confidence 3688999999 8998 786 789999998884
No 199
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=85.27 E-value=1.6 Score=35.51 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=38.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCceEE
Q 048343 186 HHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVF 265 (347)
Q Consensus 186 ~~p~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~l~~k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~y 265 (347)
..|+||++.+..+.+.+.++.+.+++.|.. ++ -+ | ..|+.-|.-+.=+|+.-.|.|
T Consensus 2 tpPpd~sk~~l~~aiG~~lal~i~~ltr~t--lP------------------hv-G---DniH~LPhGG~YrDGTK~I~Y 57 (104)
T PF01307_consen 2 TPPPDYSKSYLAAAIGVSLALIIFTLTRST--LP------------------HV-G---DNIHSLPHGGRYRDGTKSINY 57 (104)
T ss_pred CCcCCCccchhHHHHHHHHHHHHHHhhcCC--CC------------------CC-C---CCCCCCCCCCcccCCCcEEEe
Confidence 358999997655555454555555555442 11 12 2 348889998877773234899
Q ss_pred EEcCCC
Q 048343 266 FYQGSG 271 (347)
Q Consensus 266 f~~g~~ 271 (347)
..++.+
T Consensus 58 ~~P~~~ 63 (104)
T PF01307_consen 58 NSPNKL 63 (104)
T ss_pred CCCCCC
Confidence 888765
No 200
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=84.76 E-value=3.3 Score=36.38 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=49.1
Q ss_pred EcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-H--HHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 50 HLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-F--SLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 50 ~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-f--e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
..+++-|++-- + ++..++|.+.++ ||+- |+.++.| | .+||+-.. ++..=+++|-++.
T Consensus 24 ~w~~ea~~~Ak---~--e~KpIfl~ig~~----~C~w-ChvM~~esf~d~eVa~~lN----------~~FI~VkvDree~ 83 (163)
T PF03190_consen 24 PWGEEALEKAK---K--ENKPIFLSIGYS----WCHW-CHVMERESFSDPEVAEYLN----------RNFIPVKVDREER 83 (163)
T ss_dssp -SSHHHHHHHH---H--HT--EEEEEE-T----T-HH-HHHHHHHTTT-HHHHHHHH----------HH-EEEEEETTT-
T ss_pred cCCHHHHHHHH---h--cCCcEEEEEEec----CCcc-hhhhcccCcCCHHHHHHHh----------CCEEEEEeccccC
Confidence 45556676653 2 345788999888 8999 7988753 3 34554442 2467789999999
Q ss_pred cchHhHc--------CCCCCceEEEEcCCCCC
Q 048343 127 QSSFALF--------AVNSLPHIRLVGPDAKS 150 (347)
Q Consensus 127 ~~lf~~~--------~I~svP~l~~fpp~~g~ 150 (347)
+++-+.| |-.+.|+-++.-|. |+
T Consensus 84 Pdid~~y~~~~~~~~~~gGwPl~vfltPd-g~ 114 (163)
T PF03190_consen 84 PDIDKIYMNAVQAMSGSGGWPLTVFLTPD-GK 114 (163)
T ss_dssp HHHHHHHHHHHHHHHS---SSEEEEE-TT-S-
T ss_pred ccHHHHHHHHHHHhcCCCCCCceEEECCC-CC
Confidence 9888887 78999999999985 44
No 201
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=84.71 E-value=3 Score=33.08 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=30.1
Q ss_pred CCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343 82 NKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL 143 (347)
Q Consensus 82 ~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~ 143 (347)
.||+. |++...-++. .++-|-.+|++++++ +-+.-|-+++|.+++
T Consensus 25 ~~Cp~-C~~ak~lL~~----------------~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGF-SARAVQILKA----------------CGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCch-HHHHHHHHHH----------------cCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 48999 6766554432 135577889987654 344567789999965
No 202
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.27 E-value=1.9 Score=43.39 Aligned_cols=51 Identities=8% Similarity=0.231 Sum_probs=35.3
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc---hHhH---------cCCCCCc
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS---SFAL---------FAVNSLP 139 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~---lf~~---------~~I~svP 139 (347)
|+.||.+ ||+. |++... +.++ .++-|-.+|+++.++ ..++ .|-+++|
T Consensus 4 V~vys~~----~Cp~-C~~aK~--------~L~~--------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP 62 (410)
T PRK12759 4 VRIYTKT----NCPF-CDLAKS--------WFGA--------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVP 62 (410)
T ss_pred EEEEeCC----CCHH-HHHHHH--------HHHH--------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccC
Confidence 6678888 8999 675543 3332 257888999997663 2223 3788999
Q ss_pred eEEE
Q 048343 140 HIRL 143 (347)
Q Consensus 140 ~l~~ 143 (347)
.+++
T Consensus 63 ~ifi 66 (410)
T PRK12759 63 QIFV 66 (410)
T ss_pred eEEE
Confidence 9976
No 203
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=82.93 E-value=2.7 Score=34.85 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHH
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASS 101 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s 101 (347)
.+++.|+.+ +|++ |+.+.|+++++.+.
T Consensus 7 ~~i~~f~D~----~Cp~-C~~~~~~l~~~~~~ 33 (154)
T cd03023 7 VTIVEFFDY----NCGY-CKKLAPELEKLLKE 33 (154)
T ss_pred EEEEEEECC----CChh-HHHhhHHHHHHHHH
Confidence 577788877 8999 89999999886643
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=81.17 E-value=3.1 Score=34.38 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=33.9
Q ss_pred EEEEecCCC-CCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEEE
Q 048343 72 LIFFDAHQL-HNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRLV 144 (347)
Q Consensus 72 vV~fTA~~~-~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~f 144 (347)
||.|....| ..+|+. |+....-++.. ++-|..+|++++++ +-+.=|-.++|.+++=
T Consensus 17 Vvvf~Kg~~~~p~Cpy-c~~ak~lL~~~----------------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 17 ILLYMKGSPKLPSCGF-SAQAVQALSAC----------------GERFAYVDILQNPDIRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred EEEEECCCCCCCCCch-HHHHHHHHHHc----------------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 444555433 359999 68776554432 23344567776543 3344577899999874
No 205
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=81.04 E-value=4.6 Score=34.04 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~ 125 (347)
-.+|+.|... .|++ |+.+.+++.++-+.+.. .+++.|...++-.
T Consensus 13 ~~~v~~f~d~----~Cp~-C~~~~~~~~~~~~~~i~--------~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDF----QCPH-CAKFHEELEKLLKKYID--------PGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-T----TSHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEESSS
T ss_pred CeEEEEEECC----CCHh-HHHHHHHHhhhhhhccC--------CCceEEEEEEccc
Confidence 3567778776 7999 89999999988887742 4578888887743
No 206
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=77.71 E-value=6 Score=32.08 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=34.4
Q ss_pred EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-cch----HhHcCCCCCceEEEE
Q 048343 71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-QSS----FALFAVNSLPHIRLV 144 (347)
Q Consensus 71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-~~l----f~~~~I~svP~l~~f 144 (347)
-||.|+-+ +|+. |+.+..-|.. + +.+-.+..+|-+++ .++ .+.-+-+++|.+++=
T Consensus 15 ~VVifSKs----~C~~-c~~~k~ll~~----~----------~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~ 74 (104)
T KOG1752|consen 15 PVVIFSKS----SCPY-CHRAKELLSD----L----------GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIG 74 (104)
T ss_pred CEEEEECC----cCch-HHHHHHHHHh----C----------CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEEC
Confidence 45678887 8999 7886665554 2 12345556666543 233 333446799999884
No 207
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=70.51 E-value=8.1 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.3
Q ss_pred EEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 121 LEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 121 vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
..+.-+|.+|++|+|+.||++++-+++
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCC
Confidence 455567899999999999999999875
No 208
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=69.93 E-value=18 Score=29.82 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccccccCccchhHHHHHHHHHHHH--HHHHHhhhhhccC--CCCcCccCCC
Q 048343 276 AEGFAVGFLYTIVGLLLALMTH--GLVRVKSVSIQRWVMIVSLLISFW--AVNKVIYLDNWKT--GYGVHGFWPS 344 (347)
Q Consensus 276 iE~~iv~~lY~~la~~~i~L~~--~~p~~~~~~~~~~~~~~~~~~~f~--~~s~l~s~~~~K~--~y~~~~~~p~ 344 (347)
.-+...++.-.++|..++.+.. ..-.+.....|.++.++..++.|+ +|+..+..+.||. ||-+ +.+|+
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf-~~IP~ 114 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSF-DDIPD 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCH-hhCCC
Confidence 4445555544444444443332 223445566666666665555554 7888888888888 8877 77775
No 209
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=68.93 E-value=8.9 Score=37.03 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=73.8
Q ss_pred eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
.++.+++--+.......+.+.-++-..|++. ||+. -+..+|+|+-...-+.. .. -|+.=|...-+
T Consensus 56 ~~e~~~~~l~~l~~~ih~n~~~~vs~~fy~s----~C~f-sr~~~~~fd~~~sl~~~---------i~-h~~vee~~~lp 120 (319)
T KOG2640|consen 56 AIEVDGDCLQVLLDAIHGNKNDYVSLLFYAS----WCPF-SRAVRPEFDVRSSLFSS---------IQ-HFAVEESQALP 120 (319)
T ss_pred hhhcccchhhHHHHhhccccCCcccccchhc----ccCc-ccccCcccchhhhhccc---------cc-cccHHHHhhcc
Confidence 4677776555544222333344577788998 8999 89999999987765521 11 23322222346
Q ss_pred chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
+++.++++.+-|.+....+.- . -.|.+.+....|++|-.+.++
T Consensus 121 sv~s~~~~~~~ps~~~~n~t~-~--------~~~~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 121 SVFSSYGIHSEPSNLMLNQTC-P--------ASYRGERDLASLVNFYTEITP 163 (319)
T ss_pred cchhccccccCCcceeecccc-c--------hhhcccccHHHHHHHHHhhcc
Confidence 899999999999999997642 1 234566788889999999986
No 210
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=68.53 E-value=6.8 Score=32.11 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=23.3
Q ss_pred EEccCCcchHhHcCCCCCceEEEEcC
Q 048343 121 LEFKESQSSFALFAVNSLPHIRLVGP 146 (347)
Q Consensus 121 vD~~~~~~lf~~~~I~svP~l~~fpp 146 (347)
..+.-++.+|++|+|+.||++++-++
T Consensus 55 ~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred cceeEChhHHhhCCceEcCEEEEEcC
Confidence 56666889999999999999999987
No 211
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=67.89 E-value=5.2 Score=36.08 Aligned_cols=20 Identities=5% Similarity=-0.003 Sum_probs=16.3
Q ss_pred EEEEEecCCCCCCChhhcccchHHH
Q 048343 71 ILIFFDAHQLHNKPELHLQELRNEF 95 (347)
Q Consensus 71 vvV~fTA~~~~~~C~~cC~~l~pef 95 (347)
.||.|..- .|++ |..++|.+
T Consensus 40 ~VvEffdy----~Cph-C~~~~~~l 59 (207)
T PRK10954 40 QVLEFFSF----YCPH-CYQFEEVY 59 (207)
T ss_pred eEEEEeCC----CCcc-HHHhcccc
Confidence 47777776 7999 79999976
No 212
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=66.79 E-value=15 Score=31.72 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=36.0
Q ss_pred EEEEEecC-CCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCC----CCCceE
Q 048343 71 ILIFFDAH-QLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAV----NSLPHI 141 (347)
Q Consensus 71 vvV~fTA~-~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I----~svP~l 141 (347)
++|+.|+. .-+.+|+. |+..+.-++ + .+|-|-..|++.++ ++.+.++- .++|.+
T Consensus 2 VvlYttsl~giR~t~~~-C~~ak~iL~--------~--------~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV 64 (147)
T cd03031 2 VVLYTTSLRGVRKTFED-CNNVRAILE--------S--------FRVKFDERDVSMDSGFREELRELLGAELKAVSLPRV 64 (147)
T ss_pred EEEEEcCCcCCCCcChh-HHHHHHHHH--------H--------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE
Confidence 45555552 23457999 665544333 2 25778899998654 45555565 789998
Q ss_pred EEE
Q 048343 142 RLV 144 (347)
Q Consensus 142 ~~f 144 (347)
++=
T Consensus 65 FI~ 67 (147)
T cd03031 65 FVD 67 (147)
T ss_pred EEC
Confidence 863
No 213
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=64.94 E-value=9.3 Score=32.72 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343 70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSF 102 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~ 102 (347)
..|+.|+.. .|++ |+.+++..+...+.+
T Consensus 17 ~~i~~f~D~----~Cp~-C~~~~~~~~~~~~~~ 44 (178)
T cd03019 17 PEVIEFFSY----GCPH-CYNFEPILEAWVKKL 44 (178)
T ss_pred cEEEEEECC----CCcc-hhhhhHHHHHHHHhC
Confidence 567778876 8999 899999998877664
No 214
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=64.73 E-value=41 Score=28.53 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=48.6
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCce-EEEE
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPH-IRLV 144 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~-l~~f 144 (347)
+..+++-|--. |=+. |-++.....+.|..- ++-..++.+|+++-++.-+.|.+. -|. +++|
T Consensus 20 drvvViRFG~d----~d~~-Cm~mDeiL~~~a~~v----------~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 20 DRVVVIRFGRD----WDPV-CMQMDEILYKIAEKV----------KNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp SSEEEEEEE-T----TSHH-HHHHHHHHHHHHHHH----------TTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred ceEEEEEeCCC----CCcc-HHHHHHHHHHHHHHh----------hcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 55777888887 7888 799999999999865 234789999999999999999999 775 6666
No 215
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=64.46 E-value=37 Score=32.85 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=66.2
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES 126 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~ 126 (347)
|....+.-+.-++- ..| .-.+++...-.....+..+ -+++...-+++|+.++ +||+- -++..|+.+|-++-
T Consensus 234 ~fLa~dgflL~EiG--~sG--KLVaLaVidEkhk~nns~e-h~~~~ki~eEaakd~R-d~pdf---h~dFQF~hlDGnD~ 304 (468)
T KOG4277|consen 234 GFLAADGFLLAEIG--ASG--KLVALAVIDEKHKFNNSSE-HREFHKIAEEAAKDLR-DHPDF---HNDFQFAHLDGNDL 304 (468)
T ss_pred chhhcccchHHHhC--cCC--ceEEEEEeccccccCCcch-hHHHHHHHHHHHHHHH-hChhh---hhhceeeccchhHH
Confidence 45566666666652 222 2222222222211224455 3999999999999985 46543 35799999998873
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCcccccccc--c-cccCHHHHHHHHHhh
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG--D-FARMAESMADFVQSR 177 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~--~-~~~~a~~l~~fi~~~ 177 (347)
-+..+ +.--+.||+++|.-++ . ++... + ...+.++|.+||+..
T Consensus 305 ~nqil-M~als~P~l~i~Ntsn-q------eYfLse~d~qikniedilqFient 350 (468)
T KOG4277|consen 305 ANQIL-MAALSEPHLFIFNTSN-Q------EYFLSEDDPQIKNIEDILQFIENT 350 (468)
T ss_pred HHHHH-HHhhcCCeEEEEecCc-h------heeeccCChhhhhHHHHHHHHhcc
Confidence 32111 2334799999998542 1 11111 1 135789999999874
No 216
>PTZ00062 glutaredoxin; Provisional
Probab=64.00 E-value=18 Score=32.91 Aligned_cols=46 Identities=7% Similarity=-0.004 Sum_probs=30.7
Q ss_pred CCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch----HhHcCCCCCceEEEE
Q 048343 82 NKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS----FALFAVNSLPHIRLV 144 (347)
Q Consensus 82 ~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l----f~~~~I~svP~l~~f 144 (347)
.+|+. |+....-++ + .++-|...|+++++++ -+.-|-.++|.+++=
T Consensus 126 p~C~~-C~~~k~~L~--------~--------~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 126 PFCRF-SNAVVNMLN--------S--------SGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred CCChh-HHHHHHHHH--------H--------cCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 48999 676654443 2 2467788899876543 344477899998863
No 217
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=63.57 E-value=4.8 Score=32.11 Aligned_cols=13 Identities=23% Similarity=0.071 Sum_probs=5.9
Q ss_pred cchhHHHHHHHHH
Q 048343 5 PKMNHLILYFAAI 17 (347)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (347)
||.=++|.|++++
T Consensus 3 SK~~llL~l~LA~ 15 (95)
T PF07172_consen 3 SKAFLLLGLLLAA 15 (95)
T ss_pred hhHHHHHHHHHHH
Confidence 6664444333333
No 218
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=51.07 E-value=16 Score=34.24 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=19.8
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHH
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLV 98 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~v 98 (347)
-.+|+.||-+ .|+. |+++.++.+..
T Consensus 118 k~~I~vFtDp----~Cpy-C~kl~~~l~~~ 142 (251)
T PRK11657 118 PRIVYVFADP----NCPY-CKQFWQQARPW 142 (251)
T ss_pred CeEEEEEECC----CChh-HHHHHHHHHHH
Confidence 3577788887 7999 89999887653
No 219
>COG3671 Predicted membrane protein [Function unknown]
Probab=48.45 E-value=58 Score=27.07 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=46.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhccccccCccchhHHHHHHHHHHHHHHHHHhhhh-hccC-CCCcCccCCCCCC
Q 048343 271 GMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLD-NWKT-GYGVHGFWPSSWN 347 (347)
Q Consensus 271 ~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~~~~~~~~~~~~~~~~~f~~~s~l~s~~-~~K~-~y~~~~~~p~~~~ 347 (347)
++-|-+-||-.+++-.++++.+..+... .++.+++-.++.|+++.-.. ..++ .||+ |..|.
T Consensus 62 Hy~f~iRTFw~~vl~~iIg~Llt~lgiG------------v~i~~AlgvW~i~Riv~G~~yl~~g~ayp~----p~~Wi 124 (125)
T COG3671 62 HYEFLIRTFWLAVLWWIIGLLLTFLGIG------------VVILVALGVWYIYRIVIGFKYLNEGKAYPN----PKTWI 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCCcCCC----ccccc
Confidence 8889999999999999999888888763 36677788889999887654 3444 6666 44474
No 220
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=47.62 E-value=41 Score=30.34 Aligned_cols=65 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred EEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHhc---cccccCccchhHHHHHHHHHHHHHHHHHhhh
Q 048343 265 FFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHG---LVRVKSVSIQRWVMIVSLLISFWAVNKVIYL 329 (347)
Q Consensus 265 yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~~---~p~~~~~~~~~~~~~~~~~~~f~~~s~l~s~ 329 (347)
+|+++++.|+|+-+.++..+.+.+++.++.-... -.+.+....+++++.+...+.+++.-.+++.
T Consensus 102 ~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 102 FFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
No 221
>PRK00068 hypothetical protein; Validated
Probab=47.47 E-value=2.9e+02 Score=31.14 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=54.2
Q ss_pred cCCCCceecCCCCCCceEEEEcC-CCcchHHHHHHHHHHHHHHHHHHHHHHhcc-----------ccccCccchhHHHHH
Q 048343 247 IRKMPMFLADRNDPNKLVFFYQG-SGMQLGAEGFAVGFLYTIVGLLLALMTHGL-----------VRVKSVSIQRWVMIV 314 (347)
Q Consensus 247 Ir~~P~~~~~~~~~g~i~yf~~g-~~~QfgiE~~iv~~lY~~la~~~i~L~~~~-----------p~~~~~~~~~~~~~~ 314 (347)
.+++||-..|+.=.-.+.|+.=- .=+|+.....+..++.++++.+++-..... +.+..+.++++.+++
T Consensus 140 ln~~~Fg~~DP~Fg~DigFY~F~LPf~~~l~~~l~~~~~~~~i~~~~~~~l~g~~~~~~~l~~~~~~~~~~ar~hl~~l~ 219 (970)
T PRK00068 140 LNGVDFGVKDPQFGKDLSFYAFKLPFYRSLLSYLLVLLILAFIITLIAHYILGGIRKGIRLAGRKGGISRFARKQLAVLA 219 (970)
T ss_pred hCCCCCCCCCCCCCCcceEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcCCCHHHHHHHHHHH
Confidence 47899999888421226666643 356777666666666665555554333322 222233456688888
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 048343 315 SLLISFWAVNKVIYLDNW 332 (347)
Q Consensus 315 ~~~~~f~~~s~l~s~~~~ 332 (347)
++.++..+.+|.+.-|..
T Consensus 220 ~~~~ll~a~~ywL~ry~L 237 (970)
T PRK00068 220 GLLMLLKAVGYWLDRYNL 237 (970)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 888888899988877754
No 222
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=45.52 E-value=41 Score=28.75 Aligned_cols=55 Identities=7% Similarity=-0.089 Sum_probs=37.0
Q ss_pred eEEEEEecCCCCCCChhhcccc-hHHHHHHHHHhhhcCCCCCCCCC-ceEEEEEEccCC-cchHhHcCC
Q 048343 70 SILIFFDAHQLHNKPELHLQEL-RNEFSLVASSFIANNVDNPSSRG-KLFFCYLEFKES-QSSFALFAV 135 (347)
Q Consensus 70 ~vvV~fTA~~~~~~C~~cC~~l-~pefe~vA~s~~~~~p~~~~~~~-~v~F~~vD~~~~-~~lf~~~~I 135 (347)
.+|++|+-.. ||+. |..- .+.|++..+++.+. +- .|+-...|-.+. ++..+++++
T Consensus 31 ~vvl~fyP~~---~tp~-Ct~e~~~~~~~~~~~f~~~-------g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGA---FTPT-CSAQHLPGYVENADELKAK-------GVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCC---CCCC-CchhHHHHHHHhHHHHHHC-------CCCEEEEEECCCHHHHHHHHHhhCC
Confidence 4666666443 9999 7887 88999999888642 22 366666665554 356777777
No 223
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=43.14 E-value=99 Score=27.99 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=43.0
Q ss_pred EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCC--ceEEEEEEcc-C
Q 048343 49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRG--KLFFCYLEFK-E 125 (347)
Q Consensus 49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~--~v~F~~vD~~-~ 125 (347)
.+++|++=+.+. ....+...++|+|.=+ .|+--|-..-.+...+-+.-... ..+ ++.|..+|=+ |
T Consensus 50 f~l~d~~G~~~~--~~~l~Gk~~lv~FgyT----~CpdVCP~~l~~l~~~~~~l~~~------~~~~v~vv~itvDPerD 117 (207)
T COG1999 50 FELTDQDGKPFT--LKDLKGKPSLVFFGYT----HCPDVCPTTLAELKALLKKLGEG------EGDDVQVVFITVDPERD 117 (207)
T ss_pred eeeecCCCCEee--ccccCCCEEEEEeecC----CCCccChHHHHHHHHHHHHhccc------cCCCEEEEEEEECCCCC
Confidence 455554434443 2333555777877766 36544676666666666554311 123 3677777776 3
Q ss_pred CcchHhHcCC
Q 048343 126 SQSSFALFAV 135 (347)
Q Consensus 126 ~~~lf~~~~I 135 (347)
.++..++|.-
T Consensus 118 tp~~lk~Y~~ 127 (207)
T COG1999 118 TPEVLKKYAE 127 (207)
T ss_pred CHHHHHHHhc
Confidence 5677777776
No 224
>PLN02250 lipid phosphate phosphatase
Probab=38.93 E-value=2e+02 Score=27.92 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcchhhhhcCCCCce
Q 048343 228 LLGSVFVYFFSVSGAMHNIIRKMPMF 253 (347)
Q Consensus 228 ~~~sl~~i~~~isG~mfn~Ir~~P~~ 253 (347)
..+++++..+.+...+...=|--|.+
T Consensus 103 ll~sv~~t~lit~~lK~~vGRpRPdf 128 (314)
T PLN02250 103 LLFSVLITGVITDAIKDAVGRPRPDF 128 (314)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCh
Confidence 34466666666777777666655544
No 225
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=62 Score=31.81 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred CceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 114 GKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 114 ~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
.....+.-|..+++++-+-|.+++.|++.++.|..|+.. .+.++...++++.+=+++.
T Consensus 131 ~~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v------~~ws~vi~~~~fl~~l~~F 188 (356)
T KOG1364|consen 131 QRWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERV------KRWSGVIEPEQFLSDLNEF 188 (356)
T ss_pred ceEEEEeeccCCCCchhhheeccCCceEEEECCchhhhh------hhhccccCHHHHHHHHHHH
Confidence 346666777778899999999999999999999766542 3333334455554444443
No 226
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=36.76 E-value=1.6e+02 Score=23.48 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccccCccchhHHHHHHHHHHHHH
Q 048343 273 QLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWA 322 (347)
Q Consensus 273 QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~~~~~~~~~~~~~~~~~f~~ 322 (347)
.||-|..+-+.+-.+.+..++-+++..+.+++...-.+.+.+++++.+.+
T Consensus 2 ~~~~~~~~y~t~~~ii~~~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~ 51 (93)
T PF06946_consen 2 DFGKELLTYMTFLSIITPALVQAIKKTKVVPNKWIPLISVVIGILLGAAA 51 (93)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHh
Confidence 58888887777777777777778877666777777767777766655443
No 227
>PHA02132 hypothetical protein
Probab=35.28 E-value=2e+02 Score=21.74 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048343 272 MQLGAEGFAVGFLYTIVGLLLALMTHGL 299 (347)
Q Consensus 272 ~QfgiE~~iv~~lY~~la~~~i~L~~~~ 299 (347)
+||-.|-++.|+-|.+.|+.+..|++.-
T Consensus 1 m~~lfelf~~svqys~ia~~vyvl~hg~ 28 (86)
T PHA02132 1 MNLLFELFILSVQYSIIAVMVYVLIHGF 28 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4889999999999999999999999854
No 228
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=34.96 E-value=26 Score=31.99 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.1
Q ss_pred cCCcchHhHcCCCCCceEEEEc
Q 048343 124 KESQSSFALFAVNSLPHIRLVG 145 (347)
Q Consensus 124 ~~~~~lf~~~~I~svP~l~~fp 145 (347)
.-+|.+|++|+|+.||++++--
T Consensus 149 ~IDP~lF~~F~I~~VPafVv~C 170 (212)
T PRK13730 149 QIDPTLFSQYGIRSVPALVVFC 170 (212)
T ss_pred eECHHHHHhcCCccccEEEEEc
Confidence 3468999999999999999963
No 229
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=34.62 E-value=31 Score=32.21 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
++.++.+++|+++.|++++-.++ |.. ....|..++++|.+.+..
T Consensus 207 ~n~~l~~~lGv~GTPaiv~~d~~-G~~-------~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 207 DNQKLMDDLGANATPAIYYMDKD-GTL-------QQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHHcCCCCCCEEEEECCC-CCE-------EEecCCCCHHHHHHHhCC
Confidence 35579999999999999987642 321 122345678888877643
No 230
>COG3462 Predicted membrane protein [Function unknown]
Probab=34.59 E-value=81 Score=25.85 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=32.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHh---cC----CCChhHHHHHHHHHhcCCCCeEEcChhhHHHHh
Q 048343 4 SPKMNHLILYFAAIIILLVSLS---TS----DSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFL 60 (347)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~L~~l~~~s~~~VI~L~~~nf~~lv 60 (347)
+|-+-.+.|+|+++......-+ .+ .++.+|.++.++.+-+.. |+|++.|++..
T Consensus 53 mpI~~~vvli~lvvfm~~~~g~~r~~~~~d~~e~~sRA~eIlkER~AkG----EItEEEY~r~~ 112 (117)
T COG3462 53 MPIFWAVVLIFLVVFMFYILGAVRRGSDDDDAERGSRAEEILKERYAKG----EITEEEYRRII 112 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHHHHHHHHHHhcC----CCCHHHHHHHH
Confidence 3445555566555544443332 12 233377888888886454 78999999875
No 231
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=34.48 E-value=2.8e+02 Score=23.23 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhcchhhhhcCCCCceecCCCCCCceEEEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 048343 229 LGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVK 303 (347)
Q Consensus 229 ~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~ 303 (347)
...+..+.-.+++...|..+..||=..++- .++.+.||-+.=+.++.++.+.-.-+++|--++-..+
T Consensus 22 ~~~~l~l~~lL~p~~~~~~K~~~YE~G~~p--------~g~a~~~f~~qyyl~ailFvvFDie~~fl~pwav~~~ 88 (123)
T COG0838 22 GVLMLFLSKLLGPRRPNPEKLSPYECGNPP--------FGGARLRFSVQYYLVAILFVVFDVEVVFLFPWAVSFK 88 (123)
T ss_pred HHHHHHHHHHhCCCCCCccccCccccCCCC--------CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556678888899999999766553 2445777888889999999999888887776653444
No 232
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=34.31 E-value=74 Score=27.76 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343 68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA 104 (347)
Q Consensus 68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~ 104 (347)
...++|.|.-+ .|+.=|-.....+.++.+...+
T Consensus 52 Gk~~lv~F~yT----~CpdvCp~~l~~l~~~~~~l~~ 84 (174)
T PF02630_consen 52 GKWVLVFFGYT----RCPDVCPTTLANLSQLQKQLGE 84 (174)
T ss_dssp TSEEEEEEE-T----TSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEc----CCCccCHHHHHHHHHHHHHhhh
Confidence 44677777666 5754478888888888888754
No 233
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.14 E-value=33 Score=27.33 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcC
Q 048343 7 MNHLILYFAAIIILLVSLSTS 27 (347)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (347)
|.-+.+||+.|++..+.|+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 455666666655444444433
No 234
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=34.00 E-value=2.7e+02 Score=22.97 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=61.9
Q ss_pred cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343 51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF 130 (347)
Q Consensus 51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf 130 (347)
|+.+|+-+.= ..+-+-..+|.|--+. -+- =.+|-+...+||+.+.+ ..++-|.-+|=|+-+-+.
T Consensus 6 l~~~~m~e~w---edd~~g~~IvAFaee~----dpd-G~eFl~ilk~vA~~nt~--------np~LsiIWIDPD~FPllv 69 (120)
T cd03074 6 LKPENMFETW---EDDLDGIHIVAFAEEE----DPD-GYEFLEILKEVARDNTD--------NPDLSIIWIDPDDFPLLV 69 (120)
T ss_pred ccHHHHHHhh---hcccCCceEEEEeccC----Ccc-HHHHHHHHHHHHHhcCc--------CCCceEEEECCccCchhh
Confidence 4445544443 2222334556665542 333 47888999999988742 357999999999987443
Q ss_pred h------HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343 131 A------LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR 177 (347)
Q Consensus 131 ~------~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~ 177 (347)
. ...+. =|.+=+......+.. =-.+..-+.-.+++++.+||...
T Consensus 70 ~yWektF~IDl~-~PqIGVV~vtdadSv--W~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 70 PYWEKTFGIDLF-RPQIGVVNVTDADSV--WMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred HHHHhhcCcccC-CCceeeEecccccce--eEecccccccCcHHHHHHHHHhh
Confidence 3 23443 377766665421110 00111111235799999999764
No 235
>PRK02509 hypothetical protein; Provisional
Probab=33.83 E-value=6.9e+02 Score=28.29 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=56.7
Q ss_pred cCCCCceecCCCCCCceEEEEcC-CCcchHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CccchhHHHHHHHH
Q 048343 247 IRKMPMFLADRNDPNKLVFFYQG-SGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVK--------SVSIQRWVMIVSLL 317 (347)
Q Consensus 247 Ir~~P~~~~~~~~~g~i~yf~~g-~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~--------~~~~~~~~~~~~~~ 317 (347)
.+++||-..|+-=.-.+.|+.-- .=+|+........++.++++..++-|... .++. ...++++.+++++.
T Consensus 214 ~n~~~Fg~~DP~Fg~DisFYvF~LPf~~~l~~~l~~~~~~~li~~~~~Yl~~~-~~l~~g~~~~~s~~ar~hL~~L~a~~ 292 (973)
T PRK02509 214 FHSTPFNETDPLFGRDISFYIFQLPLWELLEFWLMGLFLYGFIAVTLTYLLSA-DSLSQGKFPGFSRQQLRHLYGLGGAL 292 (973)
T ss_pred hCCCCCCCCCCCCCCCcEEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccCccccCCHHHHHHHHHHHHHH
Confidence 37889988888421236776654 36777777777777777776666655432 2332 22356678888888
Q ss_pred HHHHHHHHHhhhhhc
Q 048343 318 ISFWAVNKVIYLDNW 332 (347)
Q Consensus 318 ~~f~~~s~l~s~~~~ 332 (347)
++..+.+|.++-|..
T Consensus 293 ~ll~A~~ywL~Ry~L 307 (973)
T PRK02509 293 MLTLALSHWLARYEL 307 (973)
T ss_pred HHHHHHHHHHhhHhh
Confidence 888999998887754
No 236
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=33.18 E-value=89 Score=22.67 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=21.8
Q ss_pred hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343 131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK 179 (347)
Q Consensus 131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~ 179 (347)
+.-+-..+|.+..=.. ++.. . -.+...|.+|+.+++|
T Consensus 41 ~~~~~~~vP~l~~~~~--~~~~------~----l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 41 KWSSYKKVPILRVESG--GDGQ------Q----LVDSSVIISTLKTYLG 77 (77)
T ss_pred HHhCCCccCEEEECCC--CCcc------E----EEcHHHHHHHHHHHcC
Confidence 4455678998864311 1110 1 1346778899988875
No 237
>PRK12559 transcriptional regulator Spx; Provisional
Probab=32.15 E-value=53 Score=27.53 Aligned_cols=89 Identities=3% Similarity=0.084 Sum_probs=45.4
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEEEcCC
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~fpp~ 147 (347)
+..|+.+ +|+. |+. |..|.+++ ++-|-.+|+.+++ ++-+-++..+.+.--++...
T Consensus 2 i~iY~~~----~C~~-crk--------A~~~L~~~--------gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~ 60 (131)
T PRK12559 2 VVLYTTA----SCAS-CRK--------AKAWLEEN--------QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTR 60 (131)
T ss_pred EEEEeCC----CChH-HHH--------HHHHHHHc--------CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcC
Confidence 4466776 8999 676 55676543 5677788887653 44444444333322344332
Q ss_pred CCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCC
Q 048343 148 AKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPP 189 (347)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~ 189 (347)
|.. ..+...-....+.+++.+.+.++-. =|+||+
T Consensus 61 -~~~---~k~l~~~~~~ls~~e~i~ll~~~P~----LikRPI 94 (131)
T PRK12559 61 -SKT---FQDLNINIEELSLNEFYKLIIEHPL----MLRRPI 94 (131)
T ss_pred -cHH---HHhCCCCcccCCHHHHHHHHHhCcc----eEeCCE
Confidence 211 0011100112345666677766533 466775
No 238
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=30.92 E-value=44 Score=31.15 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=36.5
Q ss_pred CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343 47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI 103 (347)
Q Consensus 47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~ 103 (347)
.|+++++++..++.+=.++.| +.|+-|-+- .||+ =..-.++|+++++.|.
T Consensus 83 ~vv~l~g~~~~~ildf~~g~R--PLVlnFGS~----TCPp-F~~~l~~f~~l~~~f~ 132 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNR--PLVLNFGSC----TCPP-FMAKLDAFKRLVEDFS 132 (237)
T ss_pred ceEeeCCCcceeHHHhccCCC--CeEEEcccc----cchH-HHHHHHHHHHHHHHhh
Confidence 599999988444432125656 478888876 5998 6888899999999874
No 239
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=30.77 E-value=54 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=23.0
Q ss_pred EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
+.+|+.+ +|+. |+. |..|.++ .++-|-.+|+.+.+
T Consensus 2 i~iY~~~----~C~~-C~k--------a~~~L~~--------~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSP----SCTS-CRK--------AKAWLEE--------HDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCC----CChH-HHH--------HHHHHHH--------cCCCcEEeeccCCh
Confidence 3456666 8999 676 4566554 25778888887654
No 240
>PRK07668 hypothetical protein; Validated
Probab=30.64 E-value=2e+02 Score=27.19 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHhhcchhhhhcCCCCceecCC
Q 048343 224 RKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADR 257 (347)
Q Consensus 224 k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~ 257 (347)
+-.|.+..+.-.++++....+++..+.|.+.-++
T Consensus 142 ~i~~~~~~~~p~~l~i~i~~l~k~yp~~~~~ls~ 175 (254)
T PRK07668 142 FLIIYLVILIPMLLIVAIMFLNKWYGTPMLQFTQ 175 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCceEEEecc
Confidence 3455666777778889999999999988776554
No 241
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=30.54 E-value=1.5e+02 Score=26.27 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048343 311 VMIVSLLISFWAVNKVI 327 (347)
Q Consensus 311 ~~~~~~~~~f~~~s~l~ 327 (347)
-.++...++|++|..++
T Consensus 132 nTiiT~~CiyiLyGlFI 148 (173)
T PF11085_consen 132 NTIITTLCIYILYGLFI 148 (173)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 34555555666655544
No 242
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=1.3e+02 Score=26.09 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=26.1
Q ss_pred ccCHHHHHHHHHhhcCCCCCcccCCCCchhHHHHH
Q 048343 164 ARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGL 198 (347)
Q Consensus 164 ~~~a~~l~~fi~~~t~~~i~~i~~p~~~~~~~~~~ 198 (347)
+.+..++.+|+-++-|.-+ .++-|+++...+..+
T Consensus 77 GkS~~qIid~mVaRYG~FV-ly~Pp~~~~T~lLW~ 110 (153)
T COG3088 77 GKSDQQIIDYMVARYGEFV-LYKPPLTGQTLLLWG 110 (153)
T ss_pred CCcHHHHHHHHHHhhccee-eecCCCchhHHHHHH
Confidence 5678899999999999765 777777876655444
No 243
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=26.46 E-value=66 Score=25.37 Aligned_cols=88 Identities=9% Similarity=0.112 Sum_probs=46.1
Q ss_pred EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEEEcCCC
Q 048343 73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRLVGPDA 148 (347)
Q Consensus 73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~fpp~~ 148 (347)
.+|+.+ +|+. |+... .|.++ .++-|-.+|+.+++ ++.+.++-.+.+.--++...
T Consensus 2 ~iY~~~----~C~~-c~ka~--------~~L~~--------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~- 59 (105)
T cd02977 2 TIYGNP----NCST-SRKAL--------AWLEE--------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTR- 59 (105)
T ss_pred EEEECC----CCHH-HHHHH--------HHHHH--------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcC-
Confidence 456666 8999 67654 34433 24667788887643 44444444443333334332
Q ss_pred CCCCCcccccccc-ccccCHHHHHHHHHhhcCCCCCcccCCC
Q 048343 149 KSLKDDSVQMEQG-DFARMAESMADFVQSRTKLTVGPIHHPP 189 (347)
Q Consensus 149 g~~~~~~~~~~~~-~~~~~a~~l~~fi~~~t~~~i~~i~~p~ 189 (347)
+.. ..+.... ....+.+++.+.+.++-. -++||+
T Consensus 60 ~~~---~~~l~~~~~~~ls~~e~~~~l~~~p~----LikRPi 94 (105)
T cd02977 60 GTP---YRKLGLADKDELSDEEALELMAEHPK----LIKRPI 94 (105)
T ss_pred Cch---HHHcCCccccCCCHHHHHHHHHhCcC----eeeCCE
Confidence 111 0111111 123567778888877644 467775
No 244
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=25.96 E-value=94 Score=25.82 Aligned_cols=37 Identities=5% Similarity=0.054 Sum_probs=25.9
Q ss_pred cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343 127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176 (347)
Q Consensus 127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~ 176 (347)
.+..++.||++.|++++ . |.. .++..+.+++.+.|.+
T Consensus 126 ~~~~~~~~i~~tPt~~i--n--G~~---------~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFI--N--GKY---------VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHT-SSSSEEEE--T--TCE---------EETTTSHHHHHHHHHH
T ss_pred HHHHHHcCCccccEEEE--C--CEE---------eCCCCCHHHHHHHHcC
Confidence 36789999999999999 2 332 2345678888887764
No 245
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=25.55 E-value=83 Score=26.37 Aligned_cols=34 Identities=6% Similarity=0.136 Sum_probs=23.7
Q ss_pred EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343 73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127 (347)
Q Consensus 73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~ 127 (347)
..|+.+ +|+. |+. |..|.+++ ++-|-.+|+.+.+
T Consensus 3 ~iY~~~----~C~~-crk--------A~~~L~~~--------~i~~~~~d~~~~~ 36 (132)
T PRK13344 3 KIYTIS----SCTS-CKK--------AKTWLNAH--------QLSYKEQNLGKEP 36 (132)
T ss_pred EEEeCC----CCHH-HHH--------HHHHHHHc--------CCCeEEEECCCCC
Confidence 456666 8999 676 56777653 5778888887643
No 246
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.22 E-value=2.5e+02 Score=23.15 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-chHhHcCC--CCCceEEEEcCCCCCCCCcccc
Q 048343 81 HNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-SSFALFAV--NSLPHIRLVGPDAKSLKDDSVQ 157 (347)
Q Consensus 81 ~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-~lf~~~~I--~svP~l~~fpp~~g~~~~~~~~ 157 (347)
++-|++ |..++--. .++- + -.+++-...||+...+ .+.+..|= ||.|.+++=.... ... +...
T Consensus 21 ~f~Cp~-c~~iEGlL----a~~P-~------l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~-~~~-~~~~ 86 (112)
T PF11287_consen 21 RFYCPH-CAAIEGLL----ASFP-D------LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAP-SPD-DAGS 86 (112)
T ss_pred eEECCc-hHHHHhHH----hhCh-h------hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCC-Ccc-cccc
Confidence 477999 67665432 2331 1 2456788899999865 67777764 7899987754211 111 1111
Q ss_pred ccccccccCHHHHHHHHHhhcCCC
Q 048343 158 MEQGDFARMAESMADFVQSRTKLT 181 (347)
Q Consensus 158 ~~~~~~~~~a~~l~~fi~~~t~~~ 181 (347)
.....+-.+++.|.++++++-|..
T Consensus 87 ~~~~rfi~d~~~I~~~La~r~g~p 110 (112)
T PF11287_consen 87 HGGRRFIDDPRRILRYLAERHGFP 110 (112)
T ss_pred cCCeEEeCCHHHHHHHHHHHcCCC
Confidence 111122357899999999998853
No 247
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=24.99 E-value=1.3e+02 Score=26.94 Aligned_cols=53 Identities=25% Similarity=0.519 Sum_probs=35.0
Q ss_pred chhHHHH----HHHHHHHhhcchhhhhcCCCCceecCCCCCCceEEEEcCCCcchHHHHHHHHHHHHHHHHHHH
Q 048343 224 RKIWLLG----SVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLA 293 (347)
Q Consensus 224 k~lW~~~----sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i 293 (347)
-..|+++ ++.+.+..+|-|.=..+ .||.. . .++.|+-+| +|+..|+++|+.+-
T Consensus 21 Ny~wA~i~~~G~~GFll~g~SSYl~~~L--lpf~~---~--~~i~FiPQG----------ivM~FYGi~gl~ls 77 (184)
T CHL00036 21 NFFWAFILFLGSLGFLLVGISSYLGKNL--IPFLP---S--QQILFFPQG----------IVMCFYGIAGLFIS 77 (184)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHhhCcCc--cccCC---h--hhCeEeCcc----------HHHHHHHHHHHHHH
Confidence 3677764 67777777777665333 66643 2 447888777 66668999877654
No 248
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=24.95 E-value=9.6e+02 Score=26.48 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=52.9
Q ss_pred cCCCCceecCCCCCCceEEEEcC-CCcchHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccCccchhHHHHHHHHH
Q 048343 247 IRKMPMFLADRNDPNKLVFFYQG-SGMQLGAEGFAVGFLYTIVGLLLALMTHGLVR-------VKSVSIQRWVMIVSLLI 318 (347)
Q Consensus 247 Ir~~P~~~~~~~~~g~i~yf~~g-~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~-------~~~~~~~~~~~~~~~~~ 318 (347)
++++||-..|+-=.-.+.|+.-. .=+|+........++-++++.+++-......+ +....++++.+++.+.+
T Consensus 132 ~n~~~Fg~~DP~Fg~Di~FYvF~LPf~~~l~~~l~~~~~~~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~~~ 211 (774)
T PF03699_consen 132 LNGTPFGITDPIFGKDISFYVFSLPFLRFLQSFLLALVVLSLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLALFF 211 (774)
T ss_pred hCCCCCCCCCCCCCCCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHHHH
Confidence 68999999888521226666644 25555555555555555544444444433322 22334667888888888
Q ss_pred HHHHHHHHhhhhhc
Q 048343 319 SFWAVNKVIYLDNW 332 (347)
Q Consensus 319 ~f~~~s~l~s~~~~ 332 (347)
+..+.++.+.-|..
T Consensus 212 l~~a~~y~L~ry~L 225 (774)
T PF03699_consen 212 LLKAVGYWLDRYEL 225 (774)
T ss_pred HHHHHHHHHHHHhH
Confidence 88888888877653
No 249
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=24.58 E-value=1.8e+02 Score=22.82 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 88 LQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 88 C~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
.++.-....+.-+++. .+..-.=.+|+.+++++++.++|-..|+++---|.
T Consensus 17 S~~ai~nl~~i~e~~l---------~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~ 67 (87)
T TIGR02654 17 SVRALKTLKNILETEF---------QGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP 67 (87)
T ss_pred HHHHHHHHHHHHHHhc---------CCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC
Confidence 3444455555555442 34577778999999999999999999998876653
No 250
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.28 E-value=2.1e+02 Score=21.62 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 89 QELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 89 ~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
++.-...++.-+++ .+++.-+=.+|+.+++++++.++|-..|+++---|.
T Consensus 16 ~~ai~nl~~i~e~~---------l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 16 ERALQNLKRILEEL---------LGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred HHHHHHHHHHHHHh---------cCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 44444555555444 245788889999999999999999999998876553
No 251
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=24.24 E-value=2.5e+02 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCc
Q 048343 312 MIVSLLISFWAVNKVIYLDNWKTGYGV 338 (347)
Q Consensus 312 ~~~~~~~~f~~~s~l~s~~~~K~~y~~ 338 (347)
.++...++|++|-+++..|-.|+.=.|
T Consensus 26 li~~~LilfviF~~~L~~yy~kteS~~ 52 (83)
T PF05814_consen 26 LIITLLILFVIFFCVLQVYYIKTESTP 52 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 444556778888888888888874333
No 252
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=24.19 E-value=5e+02 Score=28.56 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=35.7
Q ss_pred cccc-hhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCceEEEEcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 048343 221 LHDR-KIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALM 295 (347)
Q Consensus 221 l~~k-~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L 295 (347)
-+|| +.-+++++..+.+.+++..|-. -|+..|.=+ ..+.|=....=.==|++.+|+-++.++++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~tg~gi~-~av~~hl~~~~~g~~~~~y~~p~~~~~~~~~~~~~ 92 (762)
T PRK03776 22 GRNTWWFAATLTVLGLFVVLNITLFAS----DYFTGDGIN-DAVLYTLTNSLTGAGVSKYILPGIGIVLGLVAVFG 92 (762)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH----hhccCCCcc-ceEEEEEecCCCCccccceeHHHHHHHHHHHHHHH
Confidence 3443 4445556666666666665532 233334320 33444333222222466777777777766655544
No 253
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=23.70 E-value=1e+02 Score=21.76 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=26.1
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhhhccCCCCc
Q 048343 303 KSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGV 338 (347)
Q Consensus 303 ~~~~~~~~~~~~~~~~~f~~~s~l~s~~~~K~~y~~ 338 (347)
++-+.|++..++..++.+..|..++-+=.+..|||.
T Consensus 15 rslK~KN~l~i~F~~~t~~VFGwFtimTii~~g~P~ 50 (52)
T PF10958_consen 15 RSLKNKNFLGIGFALVTVAVFGWFTIMTIIHSGYPG 50 (52)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 333556677777778888888887777677778885
No 254
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=23.56 E-value=79 Score=25.32 Aligned_cols=41 Identities=5% Similarity=0.290 Sum_probs=27.1
Q ss_pred EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-------chHhHcC
Q 048343 73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-------SSFALFA 134 (347)
Q Consensus 73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-------~lf~~~~ 134 (347)
.+|+.+ +|+. |+. |..|.+++ ++-|-.+|+.+.+ ++++++|
T Consensus 2 ~iy~~~----~C~~-crk--------a~~~L~~~--------~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIK----NCDT-VKK--------ARKWLEAR--------GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCC----CCHH-HHH--------HHHHHHHc--------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 356666 8999 676 45666542 5777788887654 5566665
No 255
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=23.33 E-value=1.4e+02 Score=26.75 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=34.3
Q ss_pred chhHHHH----HHHHHHHhhcchhhhhcCCCCceecCCCCCCceEEEEcCCCcchHHHHHHHHHHHHHHHHHHH
Q 048343 224 RKIWLLG----SVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLA 293 (347)
Q Consensus 224 k~lW~~~----sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i 293 (347)
-..|+++ ++.+.+..+|-|.=..+ .|+.. . .++.|+-+| +|+..|+++|+.+-
T Consensus 25 Ny~wA~i~~~G~~GFll~g~sSYl~~~L--lpf~~---~--~~i~FiPQG----------ivM~FYGi~gl~ls 81 (188)
T PRK02542 25 NYLWASMVTIGGIGFLLAGLSSYLGRNL--LPVGD---P--STLIFIPQG----------LAMGFYGVAGTLLA 81 (188)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHhhCcCc--cccCC---h--hhCeEeCcc----------HHHHHHHHHHHHHH
Confidence 3677664 66777777777664333 56543 2 347877777 66668999876654
No 256
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=22.98 E-value=1.1e+02 Score=21.97 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcC
Q 048343 7 MNHLILYFAAIIILLVSLSTS 27 (347)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (347)
+|+++|+|++.++-+-.+++.
T Consensus 4 ~~~~lLyFctvVcaLYLvsGG 24 (59)
T PF07125_consen 4 VQTILLYFCTVVCALYLVSGG 24 (59)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 588999999997776666543
No 257
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=22.93 E-value=1.8e+02 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=19.7
Q ss_pred cccCHHHHHHHHHhhcCCCCCcccCCCC
Q 048343 163 FARMAESMADFVQSRTKLTVGPIHHPPL 190 (347)
Q Consensus 163 ~~~~a~~l~~fi~~~t~~~i~~i~~p~~ 190 (347)
.+.+.+++.+|+.++-|..+ -..-|.+
T Consensus 72 ~G~Sd~eI~~~~v~RYG~~V-ly~Pp~~ 98 (126)
T TIGR03147 72 EGKSNQQIIDFMTARFGDFV-LYNPPFK 98 (126)
T ss_pred cCCCHHHHHHHHHHhcCCeE-EecCCCC
Confidence 35788999999999999766 3333334
No 258
>PRK09301 circadian clock protein KaiB; Provisional
Probab=22.89 E-value=2.2e+02 Score=23.14 Aligned_cols=51 Identities=6% Similarity=0.027 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343 88 LQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD 147 (347)
Q Consensus 88 C~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~ 147 (347)
.++.-....++-+++. .+..-.=.+|+.+++++++.++|-..||++---|.
T Consensus 20 S~~ai~nL~~icE~~l---------~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 20 SVRALKTLKNILETEF---------KGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP 70 (103)
T ss_pred HHHHHHHHHHHHHHhc---------CCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC
Confidence 3444445555544442 34577778999999999999999999998876553
No 259
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=22.77 E-value=37 Score=29.80 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=16.9
Q ss_pred CCcchHhHcCCCCCceEEEEcC
Q 048343 125 ESQSSFALFAVNSLPHIRLVGP 146 (347)
Q Consensus 125 ~~~~lf~~~~I~svP~l~~fpp 146 (347)
+..+++++++|++.|++++|..
T Consensus 135 ~D~~la~~m~I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 135 EDQQLAREMGITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHHHHTT-SSSSEEEEE--
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 3458899999999999999983
No 260
>PF15383 TMEM237: Transmembrane protein 237
Probab=22.59 E-value=1.1e+02 Score=28.75 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=39.1
Q ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHhccc--cccCccchhHHHH--HHHHHHHHHHHHHhhhhhccCCCCcC-------
Q 048343 272 MQLG-AEGFAVGFLYTIVGLLLALMTHGLV--RVKSVSIQRWVMI--VSLLISFWAVNKVIYLDNWKTGYGVH------- 339 (347)
Q Consensus 272 ~Qfg-iE~~iv~~lY~~la~~~i~L~~~~p--~~~~~~~~~~~~~--~~~~~~f~~~s~l~s~~~~K~~y~~~------- 339 (347)
.||. .=-=+.+..|+++++++|.-....- +......|++... ..++++.|+...++++-..+.+++.+
T Consensus 132 ~~Y~~la~p~~~~fY~l~~is~VSafDr~dl~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~~~~ddrl~l~~~~n~ 211 (253)
T PF15383_consen 132 SQYSPLAYPAQSLFYFLLAISTVSAFDRYDLAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSCQMTDDRLALYPNSNP 211 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Confidence 3553 2234668899999999998877441 1111112333222 22233444445555555555544443
Q ss_pred ccCCCCC
Q 048343 340 GFWPSSW 346 (347)
Q Consensus 340 ~~~p~~~ 346 (347)
.+|||++
T Consensus 212 ~~w~~~~ 218 (253)
T PF15383_consen 212 TLWPPET 218 (253)
T ss_pred cccCCCc
Confidence 2578764
No 261
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=21.41 E-value=95 Score=29.05 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=43.1
Q ss_pred ceEEEEEecCCCCCCChhhcccchHHHHHHHHH-------hhhcCCCCCCCCCceEEEEEEccCCc-chHhHcCCCCCce
Q 048343 69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASS-------FIANNVDNPSSRGKLFFCYLEFKESQ-SSFALFAVNSLPH 140 (347)
Q Consensus 69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s-------~~~~~p~~~~~~~~v~F~~vD~~~~~-~lf~~~~I~svP~ 140 (347)
-.||-+||+. +|.- |-.....+.++|+. |+=+|=|+. +=+=-|++-+++|.| ...+.|+-++++|
T Consensus 42 ~~VVELfTSQ----GCsS-CPPAd~~l~k~a~~~~vlALsyhVdYWdYl--GWkDtlar~enTeRQ~aY~~a~g~~~vyT 114 (261)
T COG5429 42 LGVVELFTSQ----GCSS-CPPADANLAKLADDPGVLALSYHVDYWDYL--GWKDTLARKENTERQRAYARAFGARGVYT 114 (261)
T ss_pred ceEEEEeecC----CcCC-CChHHHHHHHhccCCCEEEEEEeecccccC--CccccccchhhhHHHHHHHHhhccCCCCC
Confidence 3577789997 7999 68888888777753 111110100 112246666666654 5677888888877
Q ss_pred EEEEcC
Q 048343 141 IRLVGP 146 (347)
Q Consensus 141 l~~fpp 146 (347)
=-.+-.
T Consensus 115 PQavvn 120 (261)
T COG5429 115 PQAVVN 120 (261)
T ss_pred chheee
Confidence 555544
No 262
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=20.04 E-value=1.2e+02 Score=25.17 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=17.0
Q ss_pred HHHHHHHHhccccc-cCccchhHHHHHHHHHHHH
Q 048343 289 GLLLALMTHGLVRV-KSVSIQRWVMIVSLLISFW 321 (347)
Q Consensus 289 a~~~i~L~~~~p~~-~~~~~~~~~~~~~~~~~f~ 321 (347)
+++.++|+++--.= -+|+.|.+..+.++++...
T Consensus 72 ~~s~~lLI~WYR~gdl~Pkfr~li~~~~~~ivll 105 (118)
T PF10856_consen 72 CISAILLIFWYRQGDLDPKFRYLIYYNCFSIVLL 105 (118)
T ss_pred HHHHHhheeehhcCCCChhHHHHHHHHHHHHHHH
Confidence 34455555554221 1677776666655544433
No 263
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.03 E-value=1.3e+02 Score=24.10 Aligned_cols=89 Identities=10% Similarity=0.145 Sum_probs=45.1
Q ss_pred EEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEEEcCCCC
Q 048343 74 FFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRLVGPDAK 149 (347)
Q Consensus 74 ~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~fpp~~g 149 (347)
+|+.+ +|+. |+.. ..|.+++ ++-|-.+|+.+++ ++-+-++..++|.--++... +
T Consensus 3 iY~~~----~C~~-c~ka--------~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~-~ 60 (111)
T cd03036 3 FYEYP----KCST-CRKA--------KKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTS-G 60 (111)
T ss_pred EEECC----CCHH-HHHH--------HHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcC-C
Confidence 56666 8999 6754 3454432 5678888887654 44444455555544444432 2
Q ss_pred CCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCC
Q 048343 150 SLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPP 189 (347)
Q Consensus 150 ~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~ 189 (347)
..- ..-.........+.+++.+.+.++-. -++||+
T Consensus 61 ~~~-~~l~~~~~~~~~s~~e~~~~l~~~p~----LikRPI 95 (111)
T cd03036 61 KSY-RELGLKDKLPSLSEEEALELLSSDGM----LIKRPF 95 (111)
T ss_pred chH-HhCCcccccccCCHHHHHHHHHhCcC----eeeCCE
Confidence 110 00000100012345666677766543 467775
Done!