Query 048345
Match_columns 335
No_of_seqs 160 out of 825
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 1.1E-60 2.4E-65 475.7 26.9 329 1-332 111-459 (464)
2 PF03016 Exostosin: Exostosin 100.0 1.2E-57 2.5E-62 429.5 22.3 277 2-286 2-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 100.0 1.7E-29 3.6E-34 245.1 17.9 290 4-326 195-524 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 9.2E-22 2E-26 190.8 14.6 273 3-302 97-386 (691)
5 PF00852 Glyco_transf_10: Glyc 97.6 0.00016 3.5E-09 70.2 7.2 143 138-287 138-296 (349)
6 cd03801 GT1_YqgM_like This fam 97.4 0.0022 4.7E-08 59.3 11.7 95 211-308 266-363 (374)
7 PF00534 Glycos_transf_1: Glyc 97.2 0.0017 3.6E-08 55.4 8.0 95 201-299 74-170 (172)
8 cd03820 GT1_amsD_like This fam 97.1 0.0072 1.6E-07 55.7 11.9 95 212-308 244-340 (348)
9 cd03814 GT1_like_2 This family 96.9 0.0032 7E-08 59.0 7.4 94 212-308 258-353 (364)
10 cd03794 GT1_wbuB_like This fam 96.8 0.01 2.2E-07 55.5 10.8 94 212-308 286-387 (394)
11 PLN02871 UDP-sulfoquinovose:DA 96.8 0.0072 1.6E-07 60.6 10.0 96 212-310 323-423 (465)
12 cd03822 GT1_ecORF704_like This 96.7 0.015 3.2E-07 54.6 10.9 93 212-308 259-355 (366)
13 cd03819 GT1_WavL_like This fam 96.7 0.019 4.2E-07 54.1 11.6 95 211-308 254-353 (355)
14 cd03808 GT1_cap1E_like This fa 96.6 0.026 5.6E-07 52.2 11.8 94 212-308 255-351 (359)
15 cd03821 GT1_Bme6_like This fam 96.6 0.017 3.7E-07 53.9 10.4 91 213-308 274-367 (375)
16 cd03818 GT1_ExpC_like This fam 96.6 0.025 5.4E-07 55.2 11.5 118 187-308 266-388 (396)
17 cd05844 GT1_like_7 Glycosyltra 96.5 0.034 7.4E-07 52.8 12.0 94 212-308 256-358 (367)
18 TIGR03449 mycothiol_MshA UDP-N 96.5 0.032 6.9E-07 54.3 11.5 95 212-309 294-390 (405)
19 TIGR03088 stp2 sugar transfera 96.4 0.034 7.4E-07 53.5 11.5 94 212-308 264-360 (374)
20 cd03809 GT1_mtfB_like This fam 96.4 0.024 5.3E-07 53.1 10.3 92 212-308 264-357 (365)
21 PRK15427 colanic acid biosynth 96.3 0.038 8.3E-07 54.6 11.4 94 212-308 290-393 (406)
22 cd03799 GT1_amsK_like This is 96.0 0.056 1.2E-06 50.8 10.5 94 212-308 247-349 (355)
23 cd04962 GT1_like_5 This family 96.0 0.022 4.9E-07 54.2 7.7 93 213-308 263-358 (371)
24 cd03823 GT1_ExpE7_like This fa 96.0 0.053 1.1E-06 50.5 10.0 87 212-301 254-343 (359)
25 PRK10307 putative glycosyl tra 95.9 0.043 9.3E-07 53.8 9.4 95 212-309 295-396 (412)
26 cd03825 GT1_wcfI_like This fam 95.9 0.07 1.5E-06 50.3 10.5 93 213-308 257-352 (365)
27 PRK15484 lipopolysaccharide 1, 95.8 0.084 1.8E-06 51.5 11.0 93 213-308 269-365 (380)
28 cd03811 GT1_WabH_like This fam 95.8 0.18 3.9E-06 46.3 12.6 90 213-305 256-351 (353)
29 cd03807 GT1_WbnK_like This fam 95.8 0.096 2.1E-06 48.5 10.8 92 212-308 260-354 (365)
30 cd03800 GT1_Sucrose_synthase T 95.8 0.021 4.6E-07 54.8 6.5 93 213-308 295-390 (398)
31 KOG2619 Fucosyltransferase [Ca 95.8 0.059 1.3E-06 52.5 9.3 146 138-289 159-319 (372)
32 PRK09814 beta-1,6-galactofuran 95.7 0.019 4.1E-07 55.1 5.8 88 213-306 219-317 (333)
33 cd04951 GT1_WbdM_like This fam 95.7 0.11 2.5E-06 48.8 11.1 92 212-308 254-348 (360)
34 TIGR02149 glgA_Coryne glycogen 95.7 0.092 2E-06 50.5 10.6 94 212-308 272-374 (388)
35 cd03817 GT1_UGDG_like This fam 95.6 0.21 4.5E-06 46.6 12.5 91 212-306 270-362 (374)
36 TIGR02095 glgA glycogen/starch 95.6 0.099 2.1E-06 52.5 10.7 91 213-308 358-460 (473)
37 PRK00654 glgA glycogen synthas 95.6 0.22 4.8E-06 50.0 13.3 91 214-309 350-451 (466)
38 cd03804 GT1_wbaZ_like This fam 95.3 0.068 1.5E-06 50.9 8.2 71 212-286 253-323 (351)
39 cd03798 GT1_wlbH_like This fam 95.2 0.027 5.8E-07 52.2 5.0 94 212-308 270-364 (377)
40 PF13524 Glyco_trans_1_2: Glyc 95.2 0.055 1.2E-06 41.4 5.8 81 224-308 2-84 (92)
41 PRK14098 glycogen synthase; Pr 95.1 0.18 3.9E-06 51.3 10.9 92 213-309 374-474 (489)
42 cd03806 GT1_ALG11_like This fa 95.1 0.31 6.6E-06 48.4 12.1 130 174-308 273-414 (419)
43 cd03791 GT1_Glycogen_synthase_ 94.8 0.22 4.7E-06 49.8 10.5 91 213-308 363-464 (476)
44 cd03816 GT1_ALG1_like This fam 94.8 0.23 5.1E-06 49.0 10.5 120 175-302 270-399 (415)
45 cd03805 GT1_ALG2_like This fam 94.8 0.28 6E-06 47.2 10.7 103 201-308 281-386 (392)
46 cd04949 GT1_gtfA_like This fam 94.7 0.27 5.8E-06 47.1 10.4 95 212-308 270-366 (372)
47 PRK14099 glycogen synthase; Pr 94.7 0.35 7.6E-06 49.1 11.6 92 213-309 361-467 (485)
48 cd03813 GT1_like_3 This family 94.3 0.36 7.7E-06 48.7 10.6 95 211-308 361-464 (475)
49 cd04955 GT1_like_6 This family 94.3 0.5 1.1E-05 44.5 11.0 91 212-308 259-352 (363)
50 cd03796 GT1_PIG-A_like This fa 93.8 0.36 7.7E-06 47.2 9.2 94 212-310 261-357 (398)
51 cd03792 GT1_Trehalose_phosphor 93.7 0.7 1.5E-05 44.5 11.0 93 211-308 264-359 (372)
52 PF13692 Glyco_trans_1_4: Glyc 93.6 0.066 1.4E-06 43.5 3.2 97 174-285 34-131 (135)
53 cd03795 GT1_like_4 This family 93.4 0.87 1.9E-05 42.7 10.8 94 212-308 255-354 (357)
54 cd03802 GT1_AviGT4_like This f 93.4 0.2 4.3E-06 46.7 6.4 69 213-286 236-305 (335)
55 cd03812 GT1_CapH_like This fam 93.2 0.57 1.2E-05 44.1 9.4 72 211-286 257-328 (358)
56 TIGR02472 sucr_P_syn_N sucrose 93.2 0.22 4.7E-06 49.6 6.7 92 214-308 330-428 (439)
57 PRK09922 UDP-D-galactose:(gluc 93.0 0.5 1.1E-05 45.4 8.6 87 213-301 250-340 (359)
58 TIGR03087 stp1 sugar transfera 92.7 0.44 9.6E-06 46.5 8.0 90 213-308 290-384 (397)
59 cd04946 GT1_AmsK_like This fam 92.6 1.4 3.1E-05 43.4 11.4 93 213-308 301-399 (407)
60 PHA01633 putative glycosyl tra 92.1 0.36 7.8E-06 46.7 6.4 94 212-308 215-327 (335)
61 PHA01630 putative group 1 glyc 91.3 0.56 1.2E-05 45.2 6.7 94 212-308 201-318 (331)
62 PRK15490 Vi polysaccharide bio 90.9 1.9 4.2E-05 44.5 10.4 93 213-308 465-563 (578)
63 PLN02949 transferase, transfer 90.5 1.5 3.1E-05 44.4 9.1 93 212-308 346-444 (463)
64 TIGR02918 accessory Sec system 87.5 2.4 5.2E-05 43.3 8.3 93 213-308 385-487 (500)
65 TIGR02468 sucrsPsyn_pln sucros 87.5 1.6 3.4E-05 48.2 7.3 93 214-309 561-659 (1050)
66 cd03793 GT1_Glycogen_synthase_ 87.4 2.5 5.3E-05 43.8 8.2 97 212-309 466-575 (590)
67 PLN02939 transferase, transfer 86.9 2.6 5.6E-05 46.1 8.4 93 215-311 851-957 (977)
68 smart00672 CAP10 Putative lipo 86.7 9.8 0.00021 35.3 11.2 130 171-302 81-229 (256)
69 KOG1387 Glycosyltransferase [C 86.6 7.6 0.00016 37.8 10.4 129 174-306 305-444 (465)
70 PLN02605 monogalactosyldiacylg 86.5 7.4 0.00016 37.8 10.9 78 213-300 275-361 (382)
71 TIGR02470 sucr_synth sucrose s 86.5 1.9 4E-05 46.4 7.0 85 222-309 645-736 (784)
72 TIGR00236 wecB UDP-N-acetylglu 86.0 8.9 0.00019 36.8 11.1 95 212-325 266-362 (365)
73 PRK13609 diacylglycerol glucos 85.4 11 0.00023 36.5 11.3 80 213-301 266-352 (380)
74 cd01635 Glycosyltransferase_GT 84.9 5.6 0.00012 34.1 8.3 78 174-253 135-213 (229)
75 cd04950 GT1_like_1 Glycosyltra 83.5 1.1 2.5E-05 43.4 3.6 67 212-285 265-336 (373)
76 TIGR01133 murG undecaprenyldip 82.9 2.7 6E-05 39.6 5.9 83 213-300 243-334 (348)
77 PRK13608 diacylglycerol glucos 81.8 8 0.00017 37.8 8.9 83 213-304 266-355 (391)
78 PRK15179 Vi polysaccharide bio 81.8 11 0.00024 40.1 10.4 91 213-308 584-681 (694)
79 PLN00142 sucrose synthase 80.7 4.5 9.8E-05 43.7 7.0 86 221-309 667-759 (815)
80 PLN02316 synthase/transferase 80.4 9.7 0.00021 42.3 9.6 94 216-311 915-1024(1036)
81 PRK10125 putative glycosyl tra 79.5 8.4 0.00018 38.1 8.2 66 213-282 299-364 (405)
82 PF00919 UPF0004: Uncharacteri 78.7 2.7 5.9E-05 33.1 3.6 35 20-57 7-42 (98)
83 PLN02275 transferase, transfer 78.3 13 0.00029 35.8 9.1 103 174-283 261-367 (371)
84 PRK05749 3-deoxy-D-manno-octul 73.5 6.8 0.00015 38.5 5.7 100 213-324 312-417 (425)
85 cd03785 GT1_MurG MurG is an N- 72.2 25 0.00053 33.1 9.0 83 212-300 244-337 (350)
86 cd03788 GT1_TPS Trehalose-6-Ph 70.5 7.4 0.00016 39.1 5.2 91 211-306 351-447 (460)
87 PF05686 Glyco_transf_90: Glyc 69.2 26 0.00057 34.6 8.7 130 171-301 155-297 (395)
88 PLN02846 digalactosyldiacylgly 65.1 59 0.0013 32.9 10.3 40 214-254 294-333 (462)
89 COG0438 RfaG Glycosyltransfera 64.9 14 0.0003 33.0 5.4 93 213-308 269-364 (381)
90 TIGR03590 PseG pseudaminic aci 62.3 23 0.00051 33.0 6.6 33 213-251 234-266 (279)
91 PRK00726 murG undecaprenyldiph 62.2 13 0.00028 35.4 5.0 83 213-300 245-337 (357)
92 TIGR02400 trehalose_OtsA alpha 61.8 33 0.00071 34.6 7.9 84 211-300 346-436 (456)
93 PRK00025 lpxB lipid-A-disaccha 55.5 18 0.00038 34.8 4.6 86 213-305 254-359 (380)
94 PRK14333 (dimethylallyl)adenos 51.3 18 0.0004 36.2 4.1 41 6-57 8-49 (448)
95 PF07038 DUF1324: Protein of u 44.9 15 0.00032 25.0 1.5 39 219-260 7-46 (59)
96 PRK14340 (dimethylallyl)adenos 44.7 28 0.00061 35.0 4.2 35 20-57 14-49 (445)
97 PLN03063 alpha,alpha-trehalose 42.8 90 0.0019 33.9 7.9 84 212-300 367-457 (797)
98 PF13528 Glyco_trans_1_3: Glyc 42.4 49 0.0011 30.8 5.3 108 171-287 191-318 (318)
99 PRK14335 (dimethylallyl)adenos 41.5 34 0.00075 34.4 4.3 34 21-57 9-43 (455)
100 PRK14334 (dimethylallyl)adenos 40.4 36 0.00079 34.0 4.2 41 6-57 2-43 (440)
101 PLN02501 digalactosyldiacylgly 40.2 1E+02 0.0023 33.1 7.6 38 215-253 613-650 (794)
102 PRK14862 rimO ribosomal protei 39.1 45 0.00098 33.4 4.7 44 4-58 7-51 (440)
103 PRK14337 (dimethylallyl)adenos 39.1 43 0.00093 33.6 4.5 41 6-57 5-45 (446)
104 PRK14331 (dimethylallyl)adenos 39.0 41 0.00089 33.6 4.4 42 6-58 2-44 (437)
105 TIGR01578 MiaB-like-B MiaB-lik 37.5 39 0.00084 33.6 3.9 36 20-58 7-43 (420)
106 TIGR00089 RNA modification enz 36.2 42 0.00091 33.3 3.9 36 20-58 7-43 (429)
107 COG0297 GlgA Glycogen synthase 35.7 3.8E+02 0.0083 27.4 10.7 97 213-314 361-471 (487)
108 PRK14329 (dimethylallyl)adenos 34.4 52 0.0011 33.3 4.3 36 20-58 31-67 (467)
109 COG0621 MiaB 2-methylthioadeni 33.2 41 0.00089 33.8 3.2 35 20-57 10-46 (437)
110 PRK14338 (dimethylallyl)adenos 33.1 58 0.0013 32.8 4.4 35 20-57 28-63 (459)
111 PRK14327 (dimethylallyl)adenos 32.8 67 0.0014 33.0 4.8 35 20-57 74-109 (509)
112 PRK14332 (dimethylallyl)adenos 32.1 59 0.0013 32.7 4.2 36 20-58 18-54 (449)
113 PRK14328 (dimethylallyl)adenos 31.8 60 0.0013 32.4 4.2 42 6-58 3-45 (439)
114 KOG3185 Translation initiation 31.7 36 0.00077 30.3 2.2 32 220-251 20-51 (245)
115 COG2355 Zn-dependent dipeptida 31.3 25 0.00054 33.7 1.3 73 228-300 145-217 (313)
116 PRK14326 (dimethylallyl)adenos 31.2 75 0.0016 32.5 4.8 35 20-57 21-56 (502)
117 TIGR01574 miaB-methiolase tRNA 30.5 60 0.0013 32.4 4.0 36 20-58 7-44 (438)
118 PRK14325 (dimethylallyl)adenos 29.4 79 0.0017 31.6 4.6 42 6-58 5-47 (444)
119 PRK14336 (dimethylallyl)adenos 29.1 74 0.0016 31.6 4.3 36 20-58 9-45 (418)
120 COG3260 Ni,Fe-hydrogenase III 29.0 41 0.00088 28.3 2.0 28 23-59 30-57 (148)
121 TIGR01125 MiaB-like tRNA modif 28.9 64 0.0014 32.1 3.8 36 20-58 7-43 (430)
122 COG0707 MurG UDP-N-acetylgluco 28.6 2.4E+02 0.0053 27.5 7.7 81 213-301 245-338 (357)
123 PF09851 SHOCT: Short C-termin 28.3 82 0.0018 19.2 2.8 26 274-299 3-30 (31)
124 PRK13701 psiB plasmid SOS inhi 25.1 95 0.0021 26.1 3.5 27 280-306 7-33 (144)
125 PF07429 Glyco_transf_56: 4-al 24.4 1.1E+02 0.0024 29.8 4.4 86 212-310 257-343 (360)
126 PRK11865 pyruvate ferredoxin o 24.3 1.2E+02 0.0027 28.8 4.7 77 224-305 210-295 (299)
127 PRK14501 putative bifunctional 23.7 1.4E+02 0.0031 31.8 5.6 70 211-285 352-424 (726)
128 PF11338 DUF3140: Protein of u 21.3 1.4E+02 0.0031 23.2 3.6 30 278-307 42-75 (92)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=1.1e-60 Score=475.67 Aligned_cols=329 Identities=39% Similarity=0.670 Sum_probs=270.8
Q ss_pred CCCCceEEEeCCCCCCCccCC--CCCCccccHHHHHHHHhcCCCCcccCCCCCccEEEeeeccccee-eeeccCCcccch
Q 048345 1 MLKRFKIWAYTEGELPIAHVG--PTKHIYAIEGHFIDEMESGLSPFMARHPDEAHAFFVPISVTYIV-EYVYRPITDYHR 77 (335)
Q Consensus 1 m~~~lkIYvY~~~~~~~~~~~--~~~~~y~~E~~f~~~l~~~~S~~~T~dPeeAdlF~VP~~~~~~~-~~~~~p~~~~~~ 77 (335)
|++.+|+|+|.++.++.+|.+ +.+++|++|.+||+.++...+++||.||+|||+||||||.++.. +..+.+... ..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~-~~ 189 (464)
T KOG1021|consen 111 NEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDER-VN 189 (464)
T ss_pred hcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCcc-cc
Confidence 688999999999977778877 79999999999999997433899999999999999999999864 444555432 23
Q ss_pred hHHHHHHHHHHHHhhccCccccccCCCCeEEEecCCCcCccCCCChhhhhhheeeeec-CCCCCCccCC-CCcccCCccC
Q 048345 78 DRLVRIFNDYLRVVADKYPYWNRSAGADHFMVSCHDWAPQISHDNPEIYKNFIRVLCN-ANTSEGFNPI-RDVPLPEFNL 155 (335)
Q Consensus 78 ~~l~~~~~~~l~~~~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~~-~~~~~~frp~-~DV~iP~~~~ 155 (335)
..+.+.+.+++..+.+++|||||++|+||||+.+|+|+............+.+...++ +..+.++.+. +||+||+...
T Consensus 190 ~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~ 269 (464)
T KOG1021|consen 190 AILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPYPTI 269 (464)
T ss_pred hHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCcccCCCccC
Confidence 3455667777777788999999999999999999999876643223222334444444 3466778888 9999999853
Q ss_pred CCCCCC---CcccCCCcCCCCcEEEEEecC-CCchhHHHHHHHhccCCCCeEEee-------cccCcccHHHhhhcceeE
Q 048345 156 PPGYLT---PTRIRKRTAQGASVFAFFAGG-AHGDVRKLLFQHWKDKDDEIQVHE-------YLPKGQDYMKTMRRSKFC 224 (335)
Q Consensus 156 ~~~~~~---~~~~~~~~~~~R~~l~~F~G~-~~~~iR~~L~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~S~Fc 224 (335)
...... +...... ...|++|++|+|+ .+|.+|+.|+++|++ +++..... .+.+...|.+.|++|+||
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~R~~L~~F~G~~~~~~iR~~L~~~~~~-~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FC 347 (464)
T KOG1021|consen 270 PHPLSPPENSWQGGVP-FSNRPILAFFAGAPAGGQIRSILLDLWKK-DPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFC 347 (464)
T ss_pred cCccCccccccccCCC-CCCCceEEEEeccccCCcHHHHHHHHhhc-CcCccccccCCCCccccCCcchHHHHhhcCeEE
Confidence 322111 1222333 3799999999999 899999999999998 33322111 123457899999999999
Q ss_pred eecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHH-HHHHcCCCHHHHHHHHHHHHH-hh
Q 048345 225 LCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEI-KTILKGVSDDKYLELQMNVVQ-VQ 302 (335)
Q Consensus 225 l~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l-~~~L~~i~~~~~~~m~~~~~~-~~ 302 (335)
|||+|++++|.|+||||.+|||||||+|.+.+||++++||++|||+|++++++++ .++|.+++.+++.+||+++.+ +.
T Consensus 348 L~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~ 427 (464)
T KOG1021|consen 348 LCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLVP 427 (464)
T ss_pred ECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999995 89
Q ss_pred hhceecC--CCCCCCHHHHHHHHHHHHhhccc
Q 048345 303 RHFVLNR--PAKPFDALHMVLHSVWLRRLNVR 332 (335)
Q Consensus 303 ~~f~~~~--~~~~~dAf~~~~~~l~~r~~~~~ 332 (335)
++|.++. +.+.+||||+++.++|.|.++.+
T Consensus 428 r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~ 459 (464)
T KOG1021|consen 428 RHFLKKPPGPPKRGDAFHMILHSLWRRLHKLR 459 (464)
T ss_pred hhEEeCCCCCCCcchhHHHHHhhhhhcccccc
Confidence 9999998 88899999999999999999876
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=1.2e-57 Score=429.54 Aligned_cols=277 Identities=35% Similarity=0.597 Sum_probs=215.9
Q ss_pred CCCceEEEeCCCCC---CC-------ccCCCCCCccccHHHHHHHHhcCCCCcccCCCCCccEEEeeecccceee-eecc
Q 048345 2 LKRFKIWAYTEGEL---PI-------AHVGPTKHIYAIEGHFIDEMESGLSPFMARHPDEAHAFFVPISVTYIVE-YVYR 70 (335)
Q Consensus 2 ~~~lkIYvY~~~~~---~~-------~~~~~~~~~y~~E~~f~~~l~~~~S~~~T~dPeeAdlF~VP~~~~~~~~-~~~~ 70 (335)
.++||||||++|.+ .+ .+....+.+|++|.+|++.|++ |+++|.||+|||+||||+++++... ....
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~--s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~ 79 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALLN--SPFRTDDPEEADLFFVPFYSSCYFHHWWGS 79 (302)
T ss_pred CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHHh--CCcEeCCHHHCeEEEEEcccccccccccCC
Confidence 46899999999932 11 1233467899999999999999 9999999999999999999988521 1111
Q ss_pred CCcccchhHHHHHHHHHHHHhhccCccccccCCCCeEEEecCCCcCccCCCChhhhhhheeeee-cCC-CCCCccCCCCc
Q 048345 71 PITDYHRDRLVRIFNDYLRVVADKYPYWNRSAGADHFMVSCHDWAPQISHDNPEIYKNFIRVLC-NAN-TSEGFNPIRDV 148 (335)
Q Consensus 71 p~~~~~~~~l~~~~~~~l~~~~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~-~~~-~~~~frp~~DV 148 (335)
++ .......+..++.++++++|||||++|+||||+++|+||.+.....+.+..+.+.+++ .+. ...+|+|++||
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 155 (302)
T PF03016_consen 80 PN----SGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDI 155 (302)
T ss_pred cc----chhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCe
Confidence 11 1223344566677777889999999999999999999888776666655555555553 222 46789999999
Q ss_pred ccCCccCCCCC-CCCcccCCCcCCCCcEEEEEecCCC-------chhHHHHHHHhccCCCCeE---EeecccCcccHHHh
Q 048345 149 PLPEFNLPPGY-LTPTRIRKRTAQGASVFAFFAGGAH-------GDVRKLLFQHWKDKDDEIQ---VHEYLPKGQDYMKT 217 (335)
Q Consensus 149 ~iP~~~~~~~~-~~~~~~~~~~~~~R~~l~~F~G~~~-------~~iR~~L~~~~~~~~~~v~---~~~~~~~~~~~~~~ 217 (335)
++|++...... .........+ .+|++|++|+|+.. +.+|+.|++.|++.+ +.. ..+.+.+..+|.+.
T Consensus 156 ~~P~~~~~~~~~~~~~~~~~~~-~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 233 (302)
T PF03016_consen 156 VIPPFVPPSSLPDWRPWPQRPP-ARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDP-DFRCSDGSETCPSPSEYMEL 233 (302)
T ss_pred eccccccccccCCccccccCCc-cCCceEEEEeeeccccccccchhhhhHHHHhcccCC-cceeeecccccccchHHHHh
Confidence 99998644321 1111112333 89999999999963 368999999997643 322 12223445679999
Q ss_pred hhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC
Q 048345 218 MRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 218 ~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i 286 (335)
|++|+|||||+|+++++.||+|||.+|||||||+|++.|||+++|||++|+|+|+++++++|+++|++|
T Consensus 234 l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 234 LRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred cccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-29 Score=245.09 Aligned_cols=290 Identities=17% Similarity=0.291 Sum_probs=193.5
Q ss_pred CceEEEeCCCCCCCccCCCCCCccccHHHHHHHHhc--CCCCcccCCCCCccEEEeeecccceeeeeccCCcccchhHHH
Q 048345 4 RFKIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMES--GLSPFMARHPDEAHAFFVPISVTYIVEYVYRPITDYHRDRLV 81 (335)
Q Consensus 4 ~lkIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~--~~S~~~T~dPeeAdlF~VP~~~~~~~~~~~~p~~~~~~~~l~ 81 (335)
.|.|||||..+. ..+++...++.+.+.. +...|.|.||+.||++++-+..- ..|.. ....+
T Consensus 195 gfPVYvyd~D~~--------~~G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge~------q~P~~-l~p~e-- 257 (907)
T KOG2264|consen 195 GFPVYVYDSDII--------TSGQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGEI------QSPVV-LTPAE-- 257 (907)
T ss_pred CceeEEecccee--------ecccchHHHHHHHHHHhcccceeEeeCCCccEEEEEEeccc------cCCCc-CChHh--
Confidence 578999995532 2244555566655554 44789999999999998866421 22322 12222
Q ss_pred HHHHHHHHHhhccCccccccCCCCeEEEecCCCcCccCCCChhhhhhheeeeecCC--CCCCccCCCCcccCCcc-CCCC
Q 048345 82 RIFNDYLRVVADKYPYWNRSAGADHFMVSCHDWAPQISHDNPEIYKNFIRVLCNAN--TSEGFNPIRDVPLPEFN-LPPG 158 (335)
Q Consensus 82 ~~~~~~l~~~~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~~~~--~~~~frp~~DV~iP~~~-~~~~ 158 (335)
+.+ .-++||| |++|.||++++..- ...+.++-.-.++.+..+.++ ++..||||+|.++|+.. ...+
T Consensus 258 --lek-----lyslp~w-~~dg~Nhvl~Nl~r---~s~~~n~lyn~~t~raivvQssf~~~q~RpgfDl~V~pv~h~~~e 326 (907)
T KOG2264|consen 258 --LEK-----LYSLPHW-RTDGFNHVLFNLGR---PSDTQNLLYNFQTGRAIVVQSSFYTVQIRPGFDLPVDPVNHIAVE 326 (907)
T ss_pred --hhh-----hhcCccc-cCCCcceEEEEccC---ccccccceeEeccCceEEEeecceeeeeccCCCcccCcccccccC
Confidence 222 2368999 68999999998742 222222222123434333332 55689999999998764 3333
Q ss_pred CCCCcccCCCcCCCCcEEEEEecCCCc------hhHHHHHHHhccC------CCC-eEEe--------ec--------cc
Q 048345 159 YLTPTRIRKRTAQGASVFAFFAGGAHG------DVRKLLFQHWKDK------DDE-IQVH--------EY--------LP 209 (335)
Q Consensus 159 ~~~~~~~~~~~~~~R~~l~~F~G~~~~------~iR~~L~~~~~~~------~~~-v~~~--------~~--------~~ 209 (335)
..........| .+|++|+.|+|.+.+ ..+.-..+...+. +.. +++. +. |.
T Consensus 327 ~~~~e~~p~vP-~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg 405 (907)
T KOG2264|consen 327 KNFVELTPLVP-FQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCG 405 (907)
T ss_pred ccceecCcccc-hhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhhcc
Confidence 33333334455 899999999997742 2232222222211 111 1221 11 12
Q ss_pred CcccHHHhhhcceeEee-cCCCCC-C----ChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHH
Q 048345 210 KGQDYMKTMRRSKFCLC-PSGFEV-A----SPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTIL 283 (335)
Q Consensus 210 ~~~~~~~~~~~S~Fcl~-p~G~~~-~----s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L 283 (335)
...+-.+.++.|+|||+ |+|++- . -.|++||++.||||||+++...|||+|.|||++.++++|...+.+++.+|
T Consensus 406 ~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE~HFll 485 (907)
T KOG2264|consen 406 ERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTEAHFLL 485 (907)
T ss_pred chHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccchHHHHH
Confidence 33467899999999996 788752 2 36999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhceecCCCCCCCHHHHHHHHHHH
Q 048345 284 KGVSDDKYLELQMNVVQVQRHFVLNRPAKPFDALHMVLHSVWL 326 (335)
Q Consensus 284 ~~i~~~~~~~m~~~~~~~~~~f~~~~~~~~~dAf~~~~~~l~~ 326 (335)
+++.++++.+||++++.+|+.+.-. ..-.+++++..|.-
T Consensus 486 rs~~dsDll~mRRqGRl~wEtYls~----~~~~~~tvlA~lR~ 524 (907)
T KOG2264|consen 486 RSFEDSDLLEMRRQGRLFWETYLSD----RHLLARTVLAALRY 524 (907)
T ss_pred HhcchhhHHHHHhhhhhhHHHHhhH----HHHHHHHHHHHHHH
Confidence 9999999999999999998865522 22244555554443
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.87 E-value=9.2e-22 Score=190.75 Aligned_cols=273 Identities=17% Similarity=0.161 Sum_probs=188.4
Q ss_pred CCceEEEeCCCCCCCccCCCCCCccccHHHHHHHHhc-CCCCcccCCCCCccEEEeeecccceeeeeccCCcccchhHHH
Q 048345 3 KRFKIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMES-GLSPFMARHPDEAHAFFVPISVTYIVEYVYRPITDYHRDRLV 81 (335)
Q Consensus 3 ~~lkIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~-~~S~~~T~dPeeAdlF~VP~~~~~~~~~~~~p~~~~~~~~l~ 81 (335)
..+|+|+|.+++ ++-+......-+.|....+.++. ..|.++|.|+++||+|.......+ ++ | +.
T Consensus 97 ~~~KvyIy~l~~--~vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~Ps~d~ln--Qn---~--------l~ 161 (691)
T KOG1022|consen 97 FETKVYIYMLGD--IVDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLFMPSSDELN--QN---P--------LS 161 (691)
T ss_pred cccceeEEehhh--hhhhhcccccccccHHHHHHHHHHHhccceecCCCceEEEecchhhhc--cC---c--------ch
Confidence 367999999873 22222223333455566777776 569999999999999977654432 22 1 11
Q ss_pred HHHHHHHHHhhccCccccccCCCCeEEEecCCCcCccCCCChhhhhhheeeeec-CC-CCCCccCCCCcccCCccCCCCC
Q 048345 82 RIFNDYLRVVADKYPYWNRSAGADHFMVSCHDWAPQISHDNPEIYKNFIRVLCN-AN-TSEGFNPIRDVPLPEFNLPPGY 159 (335)
Q Consensus 82 ~~~~~~l~~~~~~~pyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~n~i~~~~~-~~-~~~~frp~~DV~iP~~~~~~~~ 159 (335)
-.+. ..++++.-.|+| |.||..+++-+-|+- .++..+..+...+... +. .++.||+|.||.+|.+++. .
T Consensus 162 ~kl~---~~ala~l~~wdr--g~nH~~fnmLpGg~p--~yntaldv~~d~a~~~gggf~tW~yr~g~dv~ipv~Sp~--~ 232 (691)
T KOG1022|consen 162 WKLE---KVALAKLLVWDR--GVNHEGFNMLPGGDP--TYNTALDVGQDEAWYSGGGFGTWKYRKGNDVYIPVRSPG--N 232 (691)
T ss_pred HHHH---HHHHhcccchhc--ccceeeEeeccCCCC--CccccccCCcceeEEecCCcCcccccCCCcccccccccc--c
Confidence 1111 123456789999 999999988764321 2222222222222222 22 6789999999999998754 3
Q ss_pred CCCcccCCCcCCCCcEEEE-EecCCCchhHHHHHHHhccCCCCeEEe-----------ecccC--cccHHHhhhcceeEe
Q 048345 160 LTPTRIRKRTAQGASVFAF-FAGGAHGDVRKLLFQHWKDKDDEIQVH-----------EYLPK--GQDYMKTMRRSKFCL 225 (335)
Q Consensus 160 ~~~~~~~~~~~~~R~~l~~-F~G~~~~~iR~~L~~~~~~~~~~v~~~-----------~~~~~--~~~~~~~~~~S~Fcl 225 (335)
.+.+... + ..|.+++. -+-+.+..+|..|.+.....+..+... ..++. ..+|...+...+||+
T Consensus 233 v~~~~~~--~-g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~ 309 (691)
T KOG1022|consen 233 VGRAFLY--D-GSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCD 309 (691)
T ss_pred cCccccC--C-ccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccccceeeeEe
Confidence 3322222 1 44555443 333456688888887765443332221 11222 347999999999999
Q ss_pred ecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 048345 226 CPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGVSDDKYLELQMNVVQVQ 302 (335)
Q Consensus 226 ~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~ 302 (335)
.-+|.+.+..-+.+.+.+||+|||..|.+.+||++++||...||+++|..+.++.+.|+++....+-+||.+....+
T Consensus 310 ~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r~~~~r 386 (691)
T KOG1022|consen 310 GDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLRRIGSR 386 (691)
T ss_pred ccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhhhhhhh
Confidence 99998888889999999999999999999999999999999999999999999999999999999998887766543
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=97.58 E-value=0.00016 Score=70.17 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=68.9
Q ss_pred CCCCccCCCCcccCCccCCCCCCCCc--ccCCCcCCCCcEEEEEecCCCc-hhHHHHHHHhccCCCCeEEeeccc-----
Q 048345 138 TSEGFNPIRDVPLPEFNLPPGYLTPT--RIRKRTAQGASVFAFFAGGAHG-DVRKLLFQHWKDKDDEIQVHEYLP----- 209 (335)
Q Consensus 138 ~~~~frp~~DV~iP~~~~~~~~~~~~--~~~~~~~~~R~~l~~F~G~~~~-~iR~~L~~~~~~~~~~v~~~~~~~----- 209 (335)
.+-+||..-||.+|+........... ........+++..++++.++.+ ..|..+++.+... -.|.+++.|.
T Consensus 138 ~TMTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~-~~vd~yG~c~~~~~~ 216 (349)
T PF00852_consen 138 WTMTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKY-IPVDSYGKCGNNNPC 216 (349)
T ss_dssp -----------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTT-S-EEE-SSTT--SSS
T ss_pred cccccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhh-cCeEccCCCCCCCCc
Confidence 45679999999999764322111100 0011111333445556666643 3588888888765 5577777662
Q ss_pred CcccHHHhhhcceeEeecCCC---CCCChhHHHHHHhCceEEEee--cc-c--ccCCCCCCCCCcEEEEeccCCHHHHHH
Q 048345 210 KGQDYMKTMRRSKFCLCPSGF---EVASPRLVEAIYVGCVPVIIS--DH-Y--ALPFSDVLDWSQFSIQIPVDKILEIKT 281 (335)
Q Consensus 210 ~~~~~~~~~~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVii~--d~-~--~lPf~~~idw~~~~v~i~~~~~~~l~~ 281 (335)
......+.+++-+|.|+.... +--+-.|++|+.+|||||+.+ .. + .+|=...|+.++|. ...+|.+
T Consensus 217 ~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La~ 290 (349)
T PF00852_consen 217 PRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELAD 290 (349)
T ss_dssp --S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHHH
T ss_pred ccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHHH
Confidence 123588999999999997543 455788999999999999999 33 2 36657788887775 5667777
Q ss_pred HHcCCC
Q 048345 282 ILKGVS 287 (335)
Q Consensus 282 ~L~~i~ 287 (335)
.|+.++
T Consensus 291 yl~~l~ 296 (349)
T PF00852_consen 291 YLKYLD 296 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776653
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.37 E-value=0.0022 Score=59.29 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=72.7
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CH
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SD 288 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~ 288 (335)
..+..+.|++|++.++|.-....+..++||+.+|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ ++
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 35788999999999999766666778999999998 6777765 2355666667778888888888877777764 45
Q ss_pred HHHHHHHHHHH-Hhhhhceec
Q 048345 289 DKYLELQMNVV-QVQRHFVLN 308 (335)
Q Consensus 289 ~~~~~m~~~~~-~~~~~f~~~ 308 (335)
+...+|.++.+ .+.+.|.|.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 343 ELRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 67778888877 566777774
No 7
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.18 E-value=0.0017 Score=55.39 Aligned_cols=95 Identities=22% Similarity=0.295 Sum_probs=61.3
Q ss_pred CeEEeecccCcccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHH
Q 048345 201 EIQVHEYLPKGQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIK 280 (335)
Q Consensus 201 ~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~ 280 (335)
.+.+.+... ..+..+.++.|.+.++|......+.-+.|||.+|| |||+++.- .+.+++.=..-.+.++..++.++.
T Consensus 74 ~i~~~~~~~-~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~~--~~~e~~~~~~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 74 NIIFLGYVP-DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDIG--GNNEIINDGVNGFLFDPNDIEELA 149 (172)
T ss_dssp TEEEEESHS-HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESST--HHHHHSGTTTSEEEESTTSHHHHH
T ss_pred ccccccccc-ccccccccccceecccccccccccccccccccccc-ceeecccc--CCceeeccccceEEeCCCCHHHHH
Confidence 455544433 45788999999999999988878889999999999 66677631 122333222245667777888887
Q ss_pred HHHcCCCH--HHHHHHHHHHH
Q 048345 281 TILKGVSD--DKYLELQMNVV 299 (335)
Q Consensus 281 ~~L~~i~~--~~~~~m~~~~~ 299 (335)
+.+..+-. +...+|.++.+
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhc
Confidence 77777543 34555555443
No 8
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.09 E-value=0.0072 Score=55.66 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=70.1
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.|+++.+++.|........-++|||++||- ||.++....+ +++++-....+.++..++.++.+.+..+ +++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 46789999999999997665556789999999985 5566532211 2344444567778888888777777665 577
Q ss_pred HHHHHHHHHHHhhhhceec
Q 048345 290 KYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~~~ 308 (335)
...+|.++.+...+.|.|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 322 LRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 8888998888778888875
No 9
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.85 E-value=0.0032 Score=58.98 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=70.3
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.|+.|..++.|.+.......++|||++|| |||.++.-. ..+++.=....+.++..+..++.+.+..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4577899999999999887666788999999999 788877432 33445434667777888877666655554 467
Q ss_pred HHHHHHHHHHHhhhhceec
Q 048345 290 KYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~~~ 308 (335)
...+|.++.....+.+.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 335 LRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHhhcCHH
Confidence 8888888888776777774
No 10
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.85 E-value=0.01 Score=55.55 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=67.4
Q ss_pred ccHHHhhhcceeEeecCCCCCC-----ChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVA-----SPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~-----s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i 286 (335)
.+..+.|+.++++++|...... ...++||+.+|| |||.++.-.. .+.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGES--AELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCc--hhhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 4677899999999999775432 456899999997 7888775322 2222222566777877888877777775
Q ss_pred --CHHHHHHHHHHHHHhh-hhceec
Q 048345 287 --SDDKYLELQMNVVQVQ-RHFVLN 308 (335)
Q Consensus 287 --~~~~~~~m~~~~~~~~-~~f~~~ 308 (335)
++++..+|.++.+... ++|.|.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHH
Confidence 6778888888877654 478775
No 11
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.82 E-value=0.0072 Score=60.60 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=73.6
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCC---CcEEEEeccCCHHHHHHHHcCC--
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDW---SQFSIQIPVDKILEIKTILKGV-- 286 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw---~~~~v~i~~~~~~~l~~~L~~i-- 286 (335)
.+..+.|+.+..++.|......+.-++|||++| +|||.++.-- ..++++= .+..+.++..+..++.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg--~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGG--IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCC--cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 468889999999999987666667899999999 7999887432 3344433 6778888888888877666654
Q ss_pred CHHHHHHHHHHHHHhhhhceecCC
Q 048345 287 SDDKYLELQMNVVQVQRHFVLNRP 310 (335)
Q Consensus 287 ~~~~~~~m~~~~~~~~~~f~~~~~ 310 (335)
+++...+|.++.++..+.|.|..-
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~~~ 423 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWRAA 423 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 467778888888887778888643
No 12
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.73 E-value=0.015 Score=54.65 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred ccHHHhhhcceeEeecCCCC--CCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--C
Q 048345 212 QDYMKTMRRSKFCLCPSGFE--VASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--S 287 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~--~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~ 287 (335)
.+..+.|+.|++++.|.... ..+.-+.|||++|| |||.++.-. .+.+.+ ....+.++..+..++.+.|..+ +
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 46789999999999998766 66778999999999 999887432 233333 3445667777777777766654 2
Q ss_pred HHHHHHHHHHHHHhhhhceec
Q 048345 288 DDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 288 ~~~~~~m~~~~~~~~~~f~~~ 308 (335)
++...+|+++.+...+.|.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 335 PELAQALRARAREYARAMSWE 355 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHH
Confidence 467888998888876667775
No 13
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.70 E-value=0.019 Score=54.10 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=69.6
Q ss_pred cccHHHhhhcceeEeecC-CCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHc-C--C
Q 048345 211 GQDYMKTMRRSKFCLCPS-GFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILK-G--V 286 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~-G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~-~--i 286 (335)
..+..+.|+.|+.++.|. -......-++|||++|| |||.++. -+..+.+.-....+.++..+..++.+.|. . .
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 346889999999999986 33344567999999999 7877774 24456665555677788888888877773 3 2
Q ss_pred CHHHHHHHHHHHHHh-hhhceec
Q 048345 287 SDDKYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 287 ~~~~~~~m~~~~~~~-~~~f~~~ 308 (335)
++++..+|.++.++. .++|.|.
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhc
Confidence 577888888888775 4577764
No 14
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.65 E-value=0.026 Score=52.19 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.++.|.+++.|......+..++||+.+|| |||.++.-. ..+.+.=....+.++.++..++.+.+..+ +++
T Consensus 255 ~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 255 DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred ccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 3577889999999999876666778999999996 777776432 23444324556777888887776666653 456
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 048345 290 KYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~-~~~f~~~ 308 (335)
...+|.++.++. .+.|.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 332 LRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 777777777665 6677664
No 15
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.62 E-value=0.017 Score=53.89 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=61.3
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDDK 290 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~~ 290 (335)
+..+.++.+++++.|.-....+.-++|||++|| |||.++.- ...+.+.- ...+.++.+ ..++.+.+..+ .+++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~~ 348 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQR 348 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHHH
Confidence 577889999999999776556678999999997 78887742 22333332 444444443 35554444443 2467
Q ss_pred HHHHHHHHHHh-hhhceec
Q 048345 291 YLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 291 ~~~m~~~~~~~-~~~f~~~ 308 (335)
..+|.++.++. .+.|.|.
T Consensus 349 ~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 349 LKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 78888888776 7788875
No 16
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.56 E-value=0.025 Score=55.24 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred hHHHHHHHhcc--CCCCeEEeecccCcccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCC
Q 048345 187 VRKLLFQHWKD--KDDEIQVHEYLPKGQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDW 264 (335)
Q Consensus 187 iR~~L~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw 264 (335)
.++.+.+.+.. ....|.+.+..+ ..++.+.|+.|..++.|.-....+.-++|||++|| |||.++.- +..+++.-
T Consensus 266 ~~~~~~~~~~~~~~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~ 341 (396)
T cd03818 266 WKQHMLDELGGRLDLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITD 341 (396)
T ss_pred HHHHHHHHhhcccCcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--Cchhhccc
Confidence 34555554442 123354444332 34678899999999987654444567999999999 78887742 45577765
Q ss_pred CcEEEEeccCCHHHHHHHHcCC--CHHHHHHHHHHHHHh-hhhceec
Q 048345 265 SQFSIQIPVDKILEIKTILKGV--SDDKYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 265 ~~~~v~i~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~~-~~~f~~~ 308 (335)
..-.+.++..+..++.+.+..+ +++...+|.++.++. .++|.|.
T Consensus 342 ~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 342 GENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 6667788888887766655543 356778888877764 4568775
No 17
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.52 E-value=0.034 Score=52.83 Aligned_cols=94 Identities=21% Similarity=0.295 Sum_probs=66.7
Q ss_pred ccHHHhhhcceeEeecCCC------CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC
Q 048345 212 QDYMKTMRRSKFCLCPSGF------EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG 285 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~ 285 (335)
.+..+.++.|...++|.-. ......++|||++|| |||.++.-. ..+.+.=.+..+.++..+..++.+.|..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 3567889999998887532 123567999999997 899888643 3455544567788888888877766665
Q ss_pred C--CHHHHHHHHHHHHH-hhhhceec
Q 048345 286 V--SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 286 i--~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+ +++...+|.++.+. +.++|.|.
T Consensus 333 l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 333 LLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 4 35567788877766 45788885
No 18
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.45 E-value=0.032 Score=54.34 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=67.6
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.|+.+..++.|.=......-++|||++|| |||.++.-- ..+++.=....+.++..+..++.+.|..+ +++
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH
Confidence 4567889999999988544444567999999997 888877422 23455434556777888887766555543 456
Q ss_pred HHHHHHHHHHHhhhhceecC
Q 048345 290 KYLELQMNVVQVQRHFVLNR 309 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~~~~ 309 (335)
...+|.++.+...+.|.|..
T Consensus 371 ~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 77888888887777788863
No 19
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.44 E-value=0.034 Score=53.45 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=68.1
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.|+.|..+++|.-......-++|||++|| |||.+|.- ...+++.-....+.++..+..++.+.|..+ +++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4678899999999888654445677999999996 99998853 234566556667788888888777766654 355
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 048345 290 KYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~-~~~f~~~ 308 (335)
...+|.++.+.. .+.|.|.
T Consensus 341 ~~~~~~~~a~~~~~~~fs~~ 360 (374)
T TIGR03088 341 ARRAHGAAGRARAEQQFSIN 360 (374)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 666676666554 5678875
No 20
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.44 E-value=0.024 Score=53.09 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=67.3
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC-C-CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG-V-SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~-i-~~~ 289 (335)
.+..+.++.+++++.|.-....+.-++||+++|| |||.++.- .+.+++ .+..+.++..+..++.+.|.. + +++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 4577889999999998654444567999999997 77777642 233444 345667777788887777776 3 467
Q ss_pred HHHHHHHHHHHhhhhceec
Q 048345 290 KYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~~~ 308 (335)
...+|.++.+.+.+.|.|.
T Consensus 339 ~~~~~~~~~~~~~~~~sw~ 357 (365)
T cd03809 339 LREELRERGLARAKRFSWE 357 (365)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 7788888888777888875
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.34 E-value=0.038 Score=54.55 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=68.5
Q ss_pred ccHHHhhhcceeEeecCCC------CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC
Q 048345 212 QDYMKTMRRSKFCLCPSGF------EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG 285 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~ 285 (335)
.+..+.++.+..++.|.=. .....-++|||++|| |||.++.-- ..+++.=..-.+.+++.|..++.+.|..
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g--~~E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSG--IPELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCC--chhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 4578899999999998421 122456999999996 999887532 2355654566777888898887777766
Q ss_pred C---CHHHHHHHHHHHHH-hhhhceec
Q 048345 286 V---SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 286 i---~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+ ++++..+|.++.+. +.+.|.|.
T Consensus 367 l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 367 FSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 56778888888875 56778875
No 22
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.05 E-value=0.056 Score=50.79 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=64.7
Q ss_pred ccHHHhhhcceeEeecCCC------CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC
Q 048345 212 QDYMKTMRRSKFCLCPSGF------EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG 285 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~------~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~ 285 (335)
.+..+.++++.++++|... ......++||+.+||- ||.++.- ...+++.=....+.+.+.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~P-vi~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLP-VISTDVS--GIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCC-EEecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4678899999999998654 3446779999999985 5555532 23455544445667777777776666655
Q ss_pred C--CHHHHHHHHHHHHH-hhhhceec
Q 048345 286 V--SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 286 i--~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+ .+++..+|.++.+. +.+.|.|.
T Consensus 324 ~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 324 LLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 35667888888775 45678775
No 23
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.01 E-value=0.022 Score=54.20 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=68.6
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDDK 290 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~~ 290 (335)
+..+.|+.|..++.|.-......-+.|||++| +|||.++.- ...+++.-..-...++..+..++.+.+..+ +++.
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDEL 339 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHH
Confidence 57889999999999975544566799999999 588888753 234556544555667777887766665553 4677
Q ss_pred HHHHHHHHHHh-hhhceec
Q 048345 291 YLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 291 ~~~m~~~~~~~-~~~f~~~ 308 (335)
..+|+++.+.. .+.|.|.
T Consensus 340 ~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 340 WQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 88899888876 6788875
No 24
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.98 E-value=0.053 Score=50.49 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=61.5
Q ss_pred ccHHHhhhcceeEeecCC-CCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CH
Q 048345 212 QDYMKTMRRSKFCLCPSG-FEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SD 288 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G-~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~ 288 (335)
.+..+.++.|+.+++|.- .......++|||++| +|||.++.- ...+.++-....+.+...+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 467788999999999964 344566799999999 577777642 234556666667888888887766665554 35
Q ss_pred HHHHHHHHHHHHh
Q 048345 289 DKYLELQMNVVQV 301 (335)
Q Consensus 289 ~~~~~m~~~~~~~ 301 (335)
+...+|+++.+..
T Consensus 331 ~~~~~~~~~~~~~ 343 (359)
T cd03823 331 DLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHhHHHh
Confidence 6677777766543
No 25
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.91 E-value=0.043 Score=53.79 Aligned_cols=95 Identities=7% Similarity=0.121 Sum_probs=67.7
Q ss_pred ccHHHhhhcceeEeecCCCCC----CChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC-
Q 048345 212 QDYMKTMRRSKFCLCPSGFEV----ASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV- 286 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~----~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i- 286 (335)
.+..+.++.|+.++.|.-... ....++|+|++|| |||.++.--....+++. +..+.++..+..++.+.|..+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~-PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGR-NVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCC-CEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHH
Confidence 467788999999988743222 2345899999995 88888742222345566 467778888888888888765
Q ss_pred -CHHHHHHHHHHHHH-hhhhceecC
Q 048345 287 -SDDKYLELQMNVVQ-VQRHFVLNR 309 (335)
Q Consensus 287 -~~~~~~~m~~~~~~-~~~~f~~~~ 309 (335)
+++...+|+++.+. +.++|.|..
T Consensus 372 ~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 372 RQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred hCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 45677889888887 456899863
No 26
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.90 E-value=0.07 Score=50.31 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=64.7
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDDK 290 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~~ 290 (335)
+..+.|+.|.+.+.|......+.-++|||.+|| |||.++. -+..+++.=.+..+.++..+..++.+.|..+ +++.
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 467889999999999876666778999999998 5666664 2344555444566677777777665555543 3556
Q ss_pred HHHHHHHHHHh-hhhceec
Q 048345 291 YLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 291 ~~~m~~~~~~~-~~~f~~~ 308 (335)
..+|.++.+.. .+.|.|.
T Consensus 334 ~~~~~~~~~~~~~~~~s~~ 352 (365)
T cd03825 334 REELGEAARELAENEFDSR 352 (365)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 77888877764 4566663
No 27
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.83 E-value=0.084 Score=51.50 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred cHHHhhhcceeEeecCCC-CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEE-EeccCCHHHHHHHHcC-CCHH
Q 048345 213 DYMKTMRRSKFCLCPSGF-EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSI-QIPVDKILEIKTILKG-VSDD 289 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v-~i~~~~~~~l~~~L~~-i~~~ 289 (335)
+..+.++.|..+++|... .....-++|||++| +|||.++.-- ..+++.=....+ .++..+..++.+.|.. +++.
T Consensus 269 ~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 269 KMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLADP 345 (380)
T ss_pred HHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCH
Confidence 567889999999999753 34456799999999 5899887532 334443233333 4566677766555544 3444
Q ss_pred HHHHHHHHHHH-hhhhceec
Q 048345 290 KYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~-~~~~f~~~ 308 (335)
+..+|.++.++ +.+.|.|.
T Consensus 346 ~~~~~~~~ar~~~~~~fsw~ 365 (380)
T PRK15484 346 ELTQIAEQAKDFVFSKYSWE 365 (380)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 45677777765 56788886
No 28
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.81 E-value=0.18 Score=46.27 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=58.3
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHH----HHHHcCCC-
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEI----KTILKGVS- 287 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l----~~~L~~i~- 287 (335)
+..+.++.|.++++|.-.......++||+.+|| |||.+|.- ...+++.=....+.++.++...+ ..++....
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 456889999999999765555677999999998 46666543 23455554566777888887775 33333333
Q ss_pred HHHHHHHHH-HHHHhhhhc
Q 048345 288 DDKYLELQM-NVVQVQRHF 305 (335)
Q Consensus 288 ~~~~~~m~~-~~~~~~~~f 305 (335)
++...+|.. +...+.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (353)
T cd03811 333 PELRERLAAAARERVAREY 351 (353)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 445566666 333444443
No 29
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=95.79 E-value=0.096 Score=48.55 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=63.3
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.|+.++.+++|......+.-+.||+++|| |||.++.-. ..+.+.= ..+.+...+..++.+.+..+ .++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPA 334 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChH
Confidence 3577899999999999877666778999999997 787776421 2222221 45667777777666666554 245
Q ss_pred HHHHHHHHHHH-hhhhceec
Q 048345 290 KYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~-~~~~f~~~ 308 (335)
...+|.++.+. +.+.|.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 335 LRQALGEAARERIEENFSIE 354 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 67777777665 45678875
No 30
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.79 E-value=0.021 Score=54.76 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=67.8
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDDK 290 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~~ 290 (335)
+..+.++.|..+++|.-......-++|||++|+ |||.++.- ...+.+.=....+.++..+..++.+.+..+ +++.
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 371 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPAL 371 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 467789999999999765555667999999995 99988742 234445444567778877877766666554 4677
Q ss_pred HHHHHHHHHHhh-hhceec
Q 048345 291 YLELQMNVVQVQ-RHFVLN 308 (335)
Q Consensus 291 ~~~m~~~~~~~~-~~f~~~ 308 (335)
..+|.++.+... +.|.|.
T Consensus 372 ~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 372 RRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 888888887654 788875
No 31
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.76 E-value=0.059 Score=52.49 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCCCccCCCCcccCCccCCC---CCCCCcccCCCcCCCCcEEEEEecCCC-chhHHHHHHHhccCCCCeEEeeccc----
Q 048345 138 TSEGFNPIRDVPLPEFNLPP---GYLTPTRIRKRTAQGASVFAFFAGGAH-GDVRKLLFQHWKDKDDEIQVHEYLP---- 209 (335)
Q Consensus 138 ~~~~frp~~DV~iP~~~~~~---~~~~~~~~~~~~~~~R~~l~~F~G~~~-~~iR~~L~~~~~~~~~~v~~~~~~~---- 209 (335)
++.+||-+-|+-+|+-.... .....+....- ..+++..+.+..++. ..-|.++++.+... -.+.+++.|.
T Consensus 159 ~T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~-~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~~ 236 (372)
T KOG2619|consen 159 WTMTYRRDSDLFVPYGYLEKPEANPVLVPVNSIL-SAKTKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKNA 236 (372)
T ss_pred ceEEEeccCCCCCccceEeecccCceeccccccc-ccccceeeeeccccCcchHHHHHHHHHHhh-Cceeeccccccccc
Confidence 45568888899988753221 11111211111 256777777777664 45677777766544 4455665443
Q ss_pred ---CcccHHHhhhcceeEeecCCC---CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEecc-CCHHHHHHH
Q 048345 210 ---KGQDYMKTMRRSKFCLCPSGF---EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPV-DKILEIKTI 282 (335)
Q Consensus 210 ---~~~~~~~~~~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~-~~~~~l~~~ 282 (335)
....-.+.+..-||-|.-... ..-+..|+-|+.+|.|||+++.... ++.++ .+..|.|.. ..+.+|...
T Consensus 237 ~~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~---e~fvP-~~SfI~vdDF~s~~ela~y 312 (372)
T KOG2619|consen 237 NRDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNY---ENFVP-PDSFIHVDDFQSPQELAAY 312 (372)
T ss_pred cCCCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCccc---cccCC-CcceEehhhcCCHHHHHHH
Confidence 233577888899999986542 3446789999999999999998543 33344 555555544 456788888
Q ss_pred HcCCCHH
Q 048345 283 LKGVSDD 289 (335)
Q Consensus 283 L~~i~~~ 289 (335)
|+.+.+.
T Consensus 313 lk~L~~n 319 (372)
T KOG2619|consen 313 LKKLDKN 319 (372)
T ss_pred HHHhhcC
Confidence 8887543
No 32
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.72 E-value=0.019 Score=55.10 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=65.6
Q ss_pred cHHHhhhcceeEeecCCCC-----------CCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFE-----------VASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKT 281 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~-----------~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~ 281 (335)
+..+.++. .|+|++.+++ .....++++|++|+ |||+++.-.+ .+++.=....+.++ ++.++.+
T Consensus 219 el~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~~--~~~V~~~~~G~~v~--~~~el~~ 292 (333)
T PRK09814 219 ELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAAI--ADFIVENGLGFVVD--SLEELPE 292 (333)
T ss_pred HHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCccH--HHHHHhCCceEEeC--CHHHHHH
Confidence 45566665 9999987761 12345899999996 9999876332 35555566777776 6778999
Q ss_pred HHcCCCHHHHHHHHHHHHHhhhhce
Q 048345 282 ILKGVSDDKYLELQMNVVQVQRHFV 306 (335)
Q Consensus 282 ~L~~i~~~~~~~m~~~~~~~~~~f~ 306 (335)
.|++++++++.+|+++.+++.+.+.
T Consensus 293 ~l~~~~~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 293 IIDNITEEEYQEMVENVKKISKLLR 317 (333)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999877654
No 33
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.71 E-value=0.11 Score=48.75 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=61.4
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC---CH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV---SD 288 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i---~~ 288 (335)
.+..+.|+.+...+.|........-++|||++|| |||.+|.- ...+++. +....++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVG--DSGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEec--CCceEeCCCCHHHHHHHHHHHHhCCH
Confidence 3567889999999998776555678999999999 88887742 1233332 134456667777766666554 45
Q ss_pred HHHHHHHHHHHHhhhhceec
Q 048345 289 DKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 289 ~~~~~m~~~~~~~~~~f~~~ 308 (335)
+....|.+....+.+.|.|.
T Consensus 329 ~~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 329 EERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 55555655544466777774
No 34
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=95.69 E-value=0.092 Score=50.52 Aligned_cols=94 Identities=16% Similarity=0.276 Sum_probs=64.8
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCH------HHHHHHHcC
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKI------LEIKTILKG 285 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~------~~l~~~L~~ 285 (335)
.+..+.++.|+.+++|.-......-++||+++|| |||.++.-. ..+++.=....+.++..+. .++.+.|..
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 4577889999999998655445566899999999 888887432 3344443445666666665 566555554
Q ss_pred C--CHHHHHHHHHHHHH-hhhhceec
Q 048345 286 V--SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 286 i--~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+ ++++..+|.++.++ +.+.|.|.
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 3 46777888887776 45678885
No 35
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.65 E-value=0.21 Score=46.57 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=59.6
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.++.|++.++|......+..++|||.+|+ |||.++.- .+.+.+.=....+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 4678899999999999876556678999999987 56666542 23454444455666666553 433333332 245
Q ss_pred HHHHHHHHHHHhhhhce
Q 048345 290 KYLELQMNVVQVQRHFV 306 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~ 306 (335)
...+|+++.+...+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 346 LRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888877665544
No 36
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.60 E-value=0.099 Score=52.50 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=61.0
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCC-CCC-----cEEEEeccCCHHHHHHHHcCC
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVL-DWS-----QFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-----~~~v~i~~~~~~~l~~~L~~i 286 (335)
...+.++.|.+++.|.-..+...-..|||++||.||+ ++.- ...+.+ |.. ...+.+++.+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 3567899999999998776667788999999997664 4432 123333 321 567778888887766655443
Q ss_pred ------CHHHHHHHHHHHHHhhhhceec
Q 048345 287 ------SDDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 287 ------~~~~~~~m~~~~~~~~~~f~~~ 308 (335)
+++...+|.++.. .+.|.|.
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~ 460 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWD 460 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcH
Confidence 4556667766553 3577775
No 37
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.60 E-value=0.22 Score=50.01 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=60.7
Q ss_pred HHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCC-CCC-----cEEEEeccCCHHHHHHHHcCC-
Q 048345 214 YMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVL-DWS-----QFSIQIPVDKILEIKTILKGV- 286 (335)
Q Consensus 214 ~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~-----~~~v~i~~~~~~~l~~~L~~i- 286 (335)
....++.|.+++.|.=..+...-..|||++||+||+-..+ - ..+.+ |.. .-.+.++..+..++.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g-G--~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG-G--LADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC-C--ccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4577899999999976667777899999999988774322 1 22322 331 457778888887776666543
Q ss_pred ----CHHHHHHHHHHHHHhhhhceecC
Q 048345 287 ----SDDKYLELQMNVVQVQRHFVLNR 309 (335)
Q Consensus 287 ----~~~~~~~m~~~~~~~~~~f~~~~ 309 (335)
.++...+|.++.. .+.|.|..
T Consensus 427 ~~~~~~~~~~~~~~~~~--~~~fsw~~ 451 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM--AQDFSWDK 451 (466)
T ss_pred HHhcCHHHHHHHHHHHh--ccCCChHH
Confidence 3455666665553 36777753
No 38
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.35 E-value=0.068 Score=50.86 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=49.7
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i 286 (335)
.+..+.++.+..+++|.- .....-++|||++|| |||.++.-. ..+++.=.+..+.++..+..++.+.|..+
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 457889999999998865 333456899999998 998887532 23444334567778877777766665554
No 39
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=95.25 E-value=0.027 Score=52.23 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=62.8
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC-CHHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV-SDDK 290 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i-~~~~ 290 (335)
.+..+.+.+|.++++|......+..++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+ .+.+
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 3577899999999999877666788999999999 677776421 23444445556777888887766666553 2222
Q ss_pred HHHHHHHHHHhhhhceec
Q 048345 291 YLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 291 ~~~m~~~~~~~~~~f~~~ 308 (335)
....+++...+.+.|.|.
T Consensus 347 ~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 347 LRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHhHHHHHHHHHHhhHH
Confidence 233344444566778775
No 40
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.21 E-value=0.055 Score=41.43 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred EeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEec-cCCHHHHHHHHcCCCHHHHHHHHHHHHH-h
Q 048345 224 CLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIP-VDKILEIKTILKGVSDDKYLELQMNVVQ-V 301 (335)
Q Consensus 224 cl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~-~~~~~~l~~~L~~i~~~~~~~m~~~~~~-~ 301 (335)
||.|.-.+..+.|++|++++||. ||..+.- .+.+.++..+-.+.+. .+++.+....|.+ ++++..+|.++..+ +
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~-vi~~~~~--~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTP-VISDDSP--GLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERV 77 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCe-EEECChH--HHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 34443334456899999999995 4444331 2334456665566664 3344433333333 67888888888875 5
Q ss_pred hhhceec
Q 048345 302 QRHFVLN 308 (335)
Q Consensus 302 ~~~f~~~ 308 (335)
.+++.|.
T Consensus 78 ~~~~t~~ 84 (92)
T PF13524_consen 78 LKRHTWE 84 (92)
T ss_pred HHhCCHH
Confidence 6678775
No 41
>PRK14098 glycogen synthase; Provisional
Probab=95.14 E-value=0.18 Score=51.25 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=61.5
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCC-CC---CcEEEEeccCCHHHHHHHHcCC--
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVL-DW---SQFSIQIPVDKILEIKTILKGV-- 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw---~~~~v~i~~~~~~~l~~~L~~i-- 286 (335)
...+.++.|.+++.|.-..+...-..|||++||+||+...+- ..+.+ |+ ..-.+.++..+...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG---l~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG---IVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC---CceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 356789999999999776677778899999999999866431 11111 21 3456677888887766665532
Q ss_pred ---CHHHHHHHHHHHHHhhhhceecC
Q 048345 287 ---SDDKYLELQMNVVQVQRHFVLNR 309 (335)
Q Consensus 287 ---~~~~~~~m~~~~~~~~~~f~~~~ 309 (335)
.++++.+|+++. +.+.|.|..
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~~ 474 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWKN 474 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChHH
Confidence 355666665543 346788763
No 42
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.06 E-value=0.31 Score=48.36 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=75.2
Q ss_pred cEEEEEecCCCc----hhHHHHHHHhccC--CCCeEEeecccCcccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceE
Q 048345 174 SVFAFFAGGAHG----DVRKLLFQHWKDK--DDEIQVHEYLPKGQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVP 247 (335)
Q Consensus 174 ~~l~~F~G~~~~----~iR~~L~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP 247 (335)
++-+.+.|+... .....|.+..+.. .+.|.+.+.. ...+..+.|+.|..++.|.-......-+.|||++||.|
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v-~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pv 351 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNA-PFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIP 351 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCC-CHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcE
Confidence 466777776421 1223333322211 2235444432 23467899999999998866555567899999999976
Q ss_pred EEeecccccCCCCCCC---CCcEEEEeccCCHHHHHHHHcC---CCHHHHHHHHHHHHHhhhhceec
Q 048345 248 VIISDHYALPFSDVLD---WSQFSIQIPVDKILEIKTILKG---VSDDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 248 Vii~d~~~lPf~~~id---w~~~~v~i~~~~~~~l~~~L~~---i~~~~~~~m~~~~~~~~~~f~~~ 308 (335)
|.-... -|.++++. -.+..+.+. +..++.+.+.. .+++....|+++.+++.+.|.|.
T Consensus 352 Ia~~~g--gp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 352 LAHASG--GPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred EEEcCC--CCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHH
Confidence 644322 25556553 233333332 55554443333 25556666777777777888764
No 43
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.83 E-value=0.22 Score=49.80 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=59.2
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCC-CCCC-----cEEEEeccCCHHHHHHHHcCC
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDV-LDWS-----QFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~-idw~-----~~~v~i~~~~~~~l~~~L~~i 286 (335)
...+.++.+.+.+.|.-..+...-..|||++||.||+-... ...+. .|.. .-.+.++..+..++.+.+..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 34578899999999977666777889999999988754332 12232 2332 156677887777766665543
Q ss_pred -----CHHHHHHHHHHHHHhhhhceec
Q 048345 287 -----SDDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 287 -----~~~~~~~m~~~~~~~~~~f~~~ 308 (335)
.++...+|.++.. .+.|.|.
T Consensus 440 l~~~~~~~~~~~~~~~~~--~~~fsw~ 464 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM--AQDFSWD 464 (476)
T ss_pred HHHHcCHHHHHHHHHHHh--ccCCChH
Confidence 2456666666543 2457765
No 44
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.82 E-value=0.23 Score=49.02 Aligned_cols=120 Identities=13% Similarity=0.262 Sum_probs=68.7
Q ss_pred EEEEEecCCCchhHHHHHHHhccCC-CCeEEeecccCcccHHHhhhcceeEeecC----CCCCCChhHHHHHHhCceEEE
Q 048345 175 VFAFFAGGAHGDVRKLLFQHWKDKD-DEIQVHEYLPKGQDYMKTMRRSKFCLCPS----GFEVASPRLVEAIYVGCVPVI 249 (335)
Q Consensus 175 ~l~~F~G~~~~~iR~~L~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~----G~~~~s~rl~dal~~GcIPVi 249 (335)
+.+.+.|. |..+..|.+..+..+ .++......-...+..+.|+.|+.+++|. |.+ ...-++|||++|+ |||
T Consensus 270 i~l~ivG~--G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PVI 345 (415)
T cd03816 270 LLCIITGK--GPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PVC 345 (415)
T ss_pred EEEEEEec--CccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-CEE
Confidence 56666663 334444444433221 13333221112457888999999988643 222 3457999999998 999
Q ss_pred eecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhh
Q 048345 250 ISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV-----SDDKYLELQMNVVQVQ 302 (335)
Q Consensus 250 i~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i-----~~~~~~~m~~~~~~~~ 302 (335)
.++.-. ..+++.=..-.+.++ +..+|.+.+..+ ++++..+|.++.++..
T Consensus 346 ~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 346 ALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred EeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 987532 224443333334442 566655555443 2577888888777654
No 45
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.76 E-value=0.28 Score=47.21 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=64.3
Q ss_pred CeEEeecccCcccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHH
Q 048345 201 EIQVHEYLPKGQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIK 280 (335)
Q Consensus 201 ~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~ 280 (335)
.|.+.+..+ ..+..+.++.|++++.|........-++|||++|| |||.++.-- ..+.+.-....+.++. +..++.
T Consensus 281 ~V~f~g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a 355 (392)
T cd03805 281 QVIFLPSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK-PVIACNSGG--PLETVVDGETGFLCEP-TPEEFA 355 (392)
T ss_pred eEEEeCCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC-CEEEECCCC--cHHHhccCCceEEeCC-CHHHHH
Confidence 344444332 33557889999999998766544566899999995 777776421 1233433333444554 666655
Q ss_pred HHHcCC--CHHHHHHHHHHHHH-hhhhceec
Q 048345 281 TILKGV--SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 281 ~~L~~i--~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+.+..+ +++...+|+++.+. +.+.|.|.
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcCHH
Confidence 555443 24567888887776 46778875
No 46
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=94.71 E-value=0.27 Score=47.10 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=66.5
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.+..+.++++..++.|.-......-+.|||++|| |||.++--.- -.+++.=.+..+.++..+..++.+.|..+ +++
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g-~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYG-PSEIIEDGENGYLVPKGDIEALAEAIIELLNDPK 347 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCC-cHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH
Confidence 3567889999999998755445677999999999 7777662111 12344434566677877877766665553 467
Q ss_pred HHHHHHHHHHHhhhhceec
Q 048345 290 KYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~~~ 308 (335)
.+.+|+++..+..+.|.|.
T Consensus 348 ~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 348 LLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 8889999888877777764
No 47
>PRK14099 glycogen synthase; Provisional
Probab=94.70 E-value=0.35 Score=49.06 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=62.3
Q ss_pred cHHHhh-hcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCC-CCCCC--------cEEEEeccCCHHHHHHH
Q 048345 213 DYMKTM-RRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSD-VLDWS--------QFSIQIPVDKILEIKTI 282 (335)
Q Consensus 213 ~~~~~~-~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-~idw~--------~~~v~i~~~~~~~l~~~ 282 (335)
+....+ +.|.+.+.|.=..+...-..|||++||+||+-..+ -+ .| ++|.. .-.+.++..+..+|.+.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~G-Gl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVG-GL--ADTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCC-Cc--cceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 345555 46898888877777778899999999999884321 11 22 23442 35777888888877666
Q ss_pred HcC----C-CHHHHHHHHHHHHHhhhhceecC
Q 048345 283 LKG----V-SDDKYLELQMNVVQVQRHFVLNR 309 (335)
Q Consensus 283 L~~----i-~~~~~~~m~~~~~~~~~~f~~~~ 309 (335)
|.. + +++...+|+++.. .+.|.|..
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~ 467 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRN 467 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHH
Confidence 653 2 4667777887764 46788864
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.31 E-value=0.36 Score=48.66 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=65.9
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCC------CcEEEEeccCCHHHHHHHHc
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDW------SQFSIQIPVDKILEIKTILK 284 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw------~~~~v~i~~~~~~~l~~~L~ 284 (335)
..+..+.|+.+..++.|.-......-++|||++|| |||.+|.- ...++++= ....+.++..+..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVG--SCRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 34567888999999888644344567999999999 88887642 12233322 24677888888887766666
Q ss_pred CC--CHHHHHHHHHHHHH-hhhhceec
Q 048345 285 GV--SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 285 ~i--~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
.+ +++...+|.++.+. +.+.|.|.
T Consensus 438 ~ll~~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 438 RLLKDPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 54 46778888888775 55667764
No 49
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.26 E-value=0.5 Score=44.47 Aligned_cols=91 Identities=19% Similarity=0.292 Sum_probs=56.1
Q ss_pred ccHHHhhhcceeEeecCCC-CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCC-HHHHHHHHcCCCHH
Q 048345 212 QDYMKTMRRSKFCLCPSGF-EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDK-ILEIKTILKGVSDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~-~~~l~~~L~~i~~~ 289 (335)
.+..+.+.++..++.|.-. .....-++|||.+|| |||.++.- +..+++.-. ...++..+ +.+....|-+ .++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~-~~~ 332 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLEELEA-DPE 332 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHHHHHh-CHH
Confidence 3566788888888887654 444567999999999 77777642 234444432 33344444 4443333322 236
Q ss_pred HHHHHHHHHHHh-hhhceec
Q 048345 290 KYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 290 ~~~~m~~~~~~~-~~~f~~~ 308 (335)
...+|.++.+.. .+.|.|.
T Consensus 333 ~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 333 EVSAMAKAARERIREKYTWE 352 (363)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 677787777754 4568875
No 50
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.78 E-value=0.36 Score=47.16 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=56.5
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC---CH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV---SD 288 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i---~~ 288 (335)
.+..+.++.+..++.|.-......-+.|||++|| |||.++.-- ..+++.=.. .+.++. +..++.+.|..+ ..
T Consensus 261 ~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~~-~~~~~~-~~~~l~~~l~~~l~~~~ 335 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPDM-ILLAEP-DVESIVRKLEEAISILR 335 (398)
T ss_pred HHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCCc-eeecCC-CHHHHHHHHHHHHhChh
Confidence 4678899999999988654444568999999998 677776432 334554232 333333 555544444332 12
Q ss_pred HHHHHHHHHHHHhhhhceecCC
Q 048345 289 DKYLELQMNVVQVQRHFVLNRP 310 (335)
Q Consensus 289 ~~~~~m~~~~~~~~~~f~~~~~ 310 (335)
++...+++...++.+.|.|..-
T Consensus 336 ~~~~~~~~~~~~~~~~fs~~~~ 357 (398)
T cd03796 336 TGKHDPWSFHNRVKKMYSWEDV 357 (398)
T ss_pred hhhhHHHHHHHHHHhhCCHHHH
Confidence 2222334444567788888743
No 51
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=93.68 E-value=0.7 Score=44.47 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=60.8
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCC-H-HHHHHHHcCCCH
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDK-I-LEIKTILKGVSD 288 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~-~-~~l~~~L~~i~~ 288 (335)
..+..+.++.+..++.|........-+.||+++| +|||.++.-.++ +.|.-....+.++..+ + ..|...|. ++
T Consensus 264 ~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~ 338 (372)
T cd03792 264 DLEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DP 338 (372)
T ss_pred HHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CH
Confidence 3456788899999998876555567899999999 599998853322 4443333334444322 2 22444443 46
Q ss_pred HHHHHHHHHHHH-hhhhceec
Q 048345 289 DKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 289 ~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+...+|.++.++ +.+.|.|.
T Consensus 339 ~~~~~~~~~a~~~~~~~~s~~ 359 (372)
T cd03792 339 ELRRKMGANAREHVRENFLIT 359 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCHH
Confidence 677888888877 46788886
No 52
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=93.65 E-value=0.066 Score=43.53 Aligned_cols=97 Identities=19% Similarity=0.378 Sum_probs=53.2
Q ss_pred cEEEEEecCCCchhHHHHHHHhccCCCCeEEeecccCcccHHHhhhcceeEeecCCC-CCCChhHHHHHHhCceEEEeec
Q 048345 174 SVFAFFAGGAHGDVRKLLFQHWKDKDDEIQVHEYLPKGQDYMKTMRRSKFCLCPSGF-EVASPRLVEAIYVGCVPVIISD 252 (335)
Q Consensus 174 ~~l~~F~G~~~~~iR~~L~~~~~~~~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d 252 (335)
++.+.+.|.....+++. . .+.+...... .++.+.++++..+++|.-. ...+..++|++.+|| |||.++
T Consensus 34 ~~~l~i~G~~~~~l~~~-----~--~~~v~~~g~~---~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~ 102 (135)
T PF13692_consen 34 DIELIIIGNGPDELKRL-----R--RPNVRFHGFV---EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASD 102 (135)
T ss_dssp TEEEEEECESS-HHCCH-----H--HCTEEEE-S----HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEH
T ss_pred CEEEEEEeCCHHHHHHh-----c--CCCEEEcCCH---HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECC
Confidence 36666677633322221 1 1245554443 3789999999999999742 345689999999998 566666
Q ss_pred ccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC
Q 048345 253 HYALPFSDVLDWSQFSIQIPVDKILEIKTILKG 285 (335)
Q Consensus 253 ~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~ 285 (335)
. ++.+.+.-....+.+ .++..++.+.|+.
T Consensus 103 ~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 103 N---GAEGIVEEDGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp H---HCHCHS---SEEEE--TT-HHHHHHHHHH
T ss_pred c---chhhheeecCCeEEE-CCCHHHHHHHHHH
Confidence 5 344444335666666 6677776666543
No 53
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.36 E-value=0.87 Score=42.66 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=64.2
Q ss_pred ccHHHhhhcceeEeecCCC--CCCChhHHHHHHhCceEEEeecccccCCCCCC-CCCcEEEEeccCCHHHHHHHHcCC--
Q 048345 212 QDYMKTMRRSKFCLCPSGF--EVASPRLVEAIYVGCVPVIISDHYALPFSDVL-DWSQFSIQIPVDKILEIKTILKGV-- 286 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~--~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw~~~~v~i~~~~~~~l~~~L~~i-- 286 (335)
.+..+.++.+..+++|.-. .....-+.||+.+|| |||.++.-.. .+.+ +.....+.++..+..++.+.+..+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~--~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTG--GSYVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCc--hhHHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 3577899999999998521 233456999999986 6777764221 1222 235667778888887776666654
Q ss_pred CHHHHHHHHHHHHHh-hhhceec
Q 048345 287 SDDKYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 287 ~~~~~~~m~~~~~~~-~~~f~~~ 308 (335)
++++..+|.++.+.. .++|.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 332 DPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred CHHHHHHHHHHHHHHHHHhcchH
Confidence 467888899888875 5677764
No 54
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=93.35 E-value=0.2 Score=46.72 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=45.8
Q ss_pred cHHHhhhcceeEeecCCC-CCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC
Q 048345 213 DYMKTMRRSKFCLCPSGF-EVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i 286 (335)
+..+.++.+.+++.|.-. ......++|||++|+ |||.+|.-- ..++++=..-.+.++. ..++.+.|+.+
T Consensus 236 ~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~--~~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 236 EKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGA--VPEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCC--chhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 466889999999998642 344567999999998 999988633 3354443323333443 66666666554
No 55
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=93.22 E-value=0.57 Score=44.08 Aligned_cols=72 Identities=19% Similarity=0.085 Sum_probs=47.4
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i 286 (335)
..+..+.+++|.++++|.-......-+.|||++|| |||.++.-. ..+.+.- ........++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 34577899999999999776666788999999999 566666422 2233322 334444555556665555554
No 56
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.19 E-value=0.22 Score=49.58 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=61.7
Q ss_pred HHHhhhcc----eeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--C
Q 048345 214 YMKTMRRS----KFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--S 287 (335)
Q Consensus 214 ~~~~~~~S----~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~ 287 (335)
..+.++.+ ..++.|.-......-+.|||++|| |||.++.- ...++++=.+-.+.++..|..++.+.++.+ +
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALSD 406 (439)
T ss_pred HHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC
Confidence 34455554 444555433344567999999999 99999853 234556545667788888888776666553 4
Q ss_pred HHHHHHHHHHHHH-hhhhceec
Q 048345 288 DDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 288 ~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
++...+|.++.+. +.+.|.|.
T Consensus 407 ~~~~~~~~~~a~~~~~~~fsw~ 428 (439)
T TIGR02472 407 SSQWQLWSRNGIEGVRRHYSWD 428 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCCHH
Confidence 5666777777764 56789886
No 57
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=92.95 E-value=0.5 Score=45.45 Aligned_cols=87 Identities=20% Similarity=0.129 Sum_probs=55.5
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCCC-HHH-
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGVS-DDK- 290 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i~-~~~- 290 (335)
.+.+.++.+..++.|........-++|||++| +|||.++...- ..+++.=....+.++..+..++.+.+..+- +.+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHHHhCccc
Confidence 35666788899998876555567899999999 58888872221 224454344556678888887766666542 222
Q ss_pred --HHHHHHHHHHh
Q 048345 291 --YLELQMNVVQV 301 (335)
Q Consensus 291 --~~~m~~~~~~~ 301 (335)
...+++++++.
T Consensus 328 ~~~~~~~~~~~~~ 340 (359)
T PRK09922 328 YQHDAIPNSIERF 340 (359)
T ss_pred CCHHHHHHHHHHh
Confidence 34455555544
No 58
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=92.70 E-value=0.44 Score=46.46 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=60.0
Q ss_pred cHHHhhhcceeEeecC--CCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CH
Q 048345 213 DYMKTMRRSKFCLCPS--GFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SD 288 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~--G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~ 288 (335)
+....++.+..+++|. |.|. ..-+.|||++|| |||.++.- .+.+..=....+.++ .+..++.+.+..+ ++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~-~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGI-QNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCCc-ccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 4677889999999884 3332 456999999998 89988742 122221123345555 6777666555543 45
Q ss_pred HHHHHHHHHHHH-hhhhceec
Q 048345 289 DKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 289 ~~~~~m~~~~~~-~~~~f~~~ 308 (335)
+...+|.++.++ +.+.|.|.
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWP 384 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 667888888876 46789986
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=92.57 E-value=1.4 Score=43.37 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=57.7
Q ss_pred cHHHhhhcce--eEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEecc-CCHHHHHHHHcCC--C
Q 048345 213 DYMKTMRRSK--FCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPV-DKILEIKTILKGV--S 287 (335)
Q Consensus 213 ~~~~~~~~S~--Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~-~~~~~l~~~L~~i--~ 287 (335)
+..+.++.+. ..+.|........-+.|||++|+ |||.++.-- ..++++=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg--~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGG--TPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCC--cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 4456665533 33334333334567999999996 999887432 2355544444555654 4666666555553 4
Q ss_pred HHHHHHHHHHHHHh-hhhceec
Q 048345 288 DDKYLELQMNVVQV-QRHFVLN 308 (335)
Q Consensus 288 ~~~~~~m~~~~~~~-~~~f~~~ 308 (335)
++...+|+++.++. .+.|.+.
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCHH
Confidence 77888999888875 4677764
No 60
>PHA01633 putative glycosyl transferase group 1
Probab=92.13 E-value=0.36 Score=46.67 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=57.3
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCC--------------C----cEEEEecc
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDW--------------S----QFSIQIPV 273 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw--------------~----~~~v~i~~ 273 (335)
.+..+.++.|.+.+.|.-......-+.|||++|| |||.++-- +..++.++ . .....++.
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~~--~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~ 291 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLMP--PLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHK 291 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccCC--CceeecCCccceeeCCCCHHHhcCcccCceeeecC
Confidence 3467889999999998766566677999999999 99988653 33333322 1 12234555
Q ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHhhhhceec
Q 048345 274 DKILEIKTILKGV-SDDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 274 ~~~~~l~~~L~~i-~~~~~~~m~~~~~~~~~~f~~~ 308 (335)
.+..++.+.|+.. ...+-.++..+++...+.|.|+
T Consensus 292 ~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~ 327 (335)
T PHA01633 292 FQIEDMANAIILAFELQDREERSMKLKELAKKYDIR 327 (335)
T ss_pred CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHH
Confidence 6666655554432 1112223344555667777764
No 61
>PHA01630 putative group 1 glycosyl transferase
Probab=91.28 E-value=0.56 Score=45.17 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=55.1
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCC--------------------cEEEEe
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWS--------------------QFSIQI 271 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~--------------------~~~v~i 271 (335)
.+..+.++.++.++.|.-......-+.|||++|| |||.++.- ...+++.=. .+.+.+
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~g--g~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v 277 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEKG--AWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFL 277 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCCC--CchhhccCCCceEEeeecccccccccCCccccccc
Confidence 4567789999999998655444566999999998 67777632 222332211 223333
Q ss_pred ccCCHH---HHHHHHcCCCHHHHHH-HHHHHHHhhhhceec
Q 048345 272 PVDKIL---EIKTILKGVSDDKYLE-LQMNVVQVQRHFVLN 308 (335)
Q Consensus 272 ~~~~~~---~l~~~L~~i~~~~~~~-m~~~~~~~~~~f~~~ 308 (335)
+.++-. ++...|...++++..+ +.++...+.+.|.|.
T Consensus 278 ~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~ 318 (331)
T PHA01630 278 DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYN 318 (331)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 433322 3445554433344444 444445567888885
No 62
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.93 E-value=1.9 Score=44.50 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=57.5
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHH---cCCCH-
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTIL---KGVSD- 288 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L---~~i~~- 288 (335)
+..+.|+.+..++.|.-......-+.|||++|| |||.++.-- ..++|.=..-.+.++..+...+.+.+ .++.+
T Consensus 465 Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG--~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~l 541 (578)
T PRK15490 465 DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGG--SAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNL 541 (578)
T ss_pred hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCC--cHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHH
Confidence 566778999998888655556678999999999 999888532 23444445556667777654433322 21111
Q ss_pred -HHHHHHHHHHHH-hhhhceec
Q 048345 289 -DKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 289 -~~~~~m~~~~~~-~~~~f~~~ 308 (335)
++..+|.++.+. +.+.|.|.
T Consensus 542 l~~~~~mg~~ARe~V~e~FS~e 563 (578)
T PRK15490 542 WRSRTGICQQTQSFLQERFTVE 563 (578)
T ss_pred HHHHHHHHHHHHHHHHhhCCHH
Confidence 122345444444 56678774
No 63
>PLN02949 transferase, transferring glycosyl groups
Probab=90.48 E-value=1.5 Score=44.38 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=57.6
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCC-CC--CcEEEEeccCCHHHHHHHHcCC--
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVL-DW--SQFSIQIPVDKILEIKTILKGV-- 286 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-dw--~~~~v~i~~~~~~~l~~~L~~i-- 286 (335)
.+..+.+++|.+++.|.-......-+.|||++||+||..... =|-++++ ++ ..-.+.. .+..++.+.+..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~--~~~~~la~ai~~ll~ 421 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA--TTVEEYADAILEVLR 421 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC--CCHHHHHHHHHHHHh
Confidence 356778899998887765544556799999999977765432 1222332 21 1111112 2555555544443
Q ss_pred -CHHHHHHHHHHHHHhhhhceec
Q 048345 287 -SDDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 287 -~~~~~~~m~~~~~~~~~~f~~~ 308 (335)
++++..+|+++.++..+.|.|.
T Consensus 422 ~~~~~r~~m~~~ar~~~~~FS~e 444 (463)
T PLN02949 422 MRETERLEIAAAARKRANRFSEQ 444 (463)
T ss_pred CCHHHHHHHHHHHHHHHHHcCHH
Confidence 5667778988888766778774
No 64
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=87.51 E-value=2.4 Score=43.28 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=58.6
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecc-cccCCCCCCCCCcEEEEecc----CC----HHHHHHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDH-YALPFSDVLDWSQFSIQIPV----DK----ILEIKTIL 283 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lPf~~~idw~~~~v~i~~----~~----~~~l~~~L 283 (335)
+..+.++.+.-++.|.=......-+.|||++|| |||.+|- .-. .++|.=..-.+.++. .+ +.+|.+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 566778888877777644445677999999998 7877773 221 244433333444441 22 44444333
Q ss_pred cC-CCHHHHHHHHHHHHHhhhhceec
Q 048345 284 KG-VSDDKYLELQMNVVQVQRHFVLN 308 (335)
Q Consensus 284 ~~-i~~~~~~~m~~~~~~~~~~f~~~ 308 (335)
.. +.+++..+|.++..+..+.|.|.
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 22 34667889999998888888874
No 65
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=87.50 E-value=1.6 Score=48.21 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=64.0
Q ss_pred HHHhhhcc----eeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--C
Q 048345 214 YMKTMRRS----KFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--S 287 (335)
Q Consensus 214 ~~~~~~~S----~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~ 287 (335)
..+.++.+ ..++.|.=..+...-+.|||++|+ |||.++.- ...++|.-..-.+.++..+...|.+.|..+ +
T Consensus 561 vp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 561 VPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVAD 637 (1050)
T ss_pred HHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhC
Confidence 34555554 355556444455577999999996 89998742 334556555667788988888877666654 4
Q ss_pred HHHHHHHHHHHHHhhhhceecC
Q 048345 288 DDKYLELQMNVVQVQRHFVLNR 309 (335)
Q Consensus 288 ~~~~~~m~~~~~~~~~~f~~~~ 309 (335)
++...+|.++..+..+.|.|..
T Consensus 638 pelr~~m~~~gr~~v~~FSWe~ 659 (1050)
T TIGR02468 638 KQLWAECRQNGLKNIHLFSWPE 659 (1050)
T ss_pred HHHHHHHHHHHHHHHHHCCHHH
Confidence 6677889888877666788863
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.37 E-value=2.5 Score=43.83 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=62.3
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccC-C-CCCC-CCCcEEEEecc-------CCHHHHHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALP-F-SDVL-DWSQFSIQIPV-------DKILEIKT 281 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lP-f-~~~i-dw~~~~v~i~~-------~~~~~l~~ 281 (335)
..|.+.++.+.-++.|.-..++..-..||+++|+ |||.++.--++ + .+++ +-.+..+.|.. +.+.+|.+
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4699999999999999877777788999999995 99999864331 0 1333 33345666652 23444544
Q ss_pred HHcCCC-HHHHHHHHHHH--HHhhhhceecC
Q 048345 282 ILKGVS-DDKYLELQMNV--VQVQRHFVLNR 309 (335)
Q Consensus 282 ~L~~i~-~~~~~~m~~~~--~~~~~~f~~~~ 309 (335)
.|..+. .++..+|.++. .++.+.|.|..
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~ 575 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWRN 575 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 444432 22333333333 37788899974
No 67
>PLN02939 transferase, transferring glycosyl groups
Probab=86.86 E-value=2.6 Score=46.10 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred HHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCC--------cEEEEeccCCHHHHHHHHcC-
Q 048345 215 MKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWS--------QFSIQIPVDKILEIKTILKG- 285 (335)
Q Consensus 215 ~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~--------~~~v~i~~~~~~~l~~~L~~- 285 (335)
...++.|.+++.|.=..+...-..|||++||+||+...+= ++ +-+.|++ .-.+.++..+...+.+.|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 3679999999999777777788999999999999764321 11 1122332 23566777777766554433
Q ss_pred ---C--CHHHHHHHHHHHHHhhhhceecCCC
Q 048345 286 ---V--SDDKYLELQMNVVQVQRHFVLNRPA 311 (335)
Q Consensus 286 ---i--~~~~~~~m~~~~~~~~~~f~~~~~~ 311 (335)
+ +++.+.+|+++. +.+.|.|....
T Consensus 929 L~~~~~dpe~~~~L~~~a--m~~dFSWe~~A 957 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKD--MNIDFSWDSSA 957 (977)
T ss_pred HHHhccCHHHHHHHHHHH--HHhcCCHHHHH
Confidence 2 467778887653 45678887433
No 68
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=86.67 E-value=9.8 Score=35.34 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=81.5
Q ss_pred CCCcEEEEEecCCCch-hHHHHHHHhccCCC--CeEEeeccc-----------C-cccHHHhhhcceeEeecCCCCCCCh
Q 048345 171 QGASVFAFFAGGAHGD-VRKLLFQHWKDKDD--EIQVHEYLP-----------K-GQDYMKTMRRSKFCLCPSGFEVASP 235 (335)
Q Consensus 171 ~~R~~l~~F~G~~~~~-iR~~L~~~~~~~~~--~v~~~~~~~-----------~-~~~~~~~~~~S~Fcl~p~G~~~~s~ 235 (335)
..|.-.++|+|+..+. .|+.|++...+.+. ++.+...+. . ...-.+...+-||=+...|.+ .|.
T Consensus 81 ~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~-~S~ 159 (256)
T smart00672 81 SDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA-WSV 159 (256)
T ss_pred cccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCcc-chh
Confidence 5677889999999877 89999987665432 233332110 0 112345567789999999986 478
Q ss_pred hHHHHHHhCceEEEeecccccCCCC-CCCCCcEEEEec-cCC--HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 048345 236 RLVEAIYVGCVPVIISDHYALPFSD-VLDWSQFSIQIP-VDK--ILEIKTILKGVSDDKYLELQMNVVQVQ 302 (335)
Q Consensus 236 rl~dal~~GcIPVii~d~~~lPf~~-~idw~~~~v~i~-~~~--~~~l~~~L~~i~~~~~~~m~~~~~~~~ 302 (335)
||.--|.+|++++.....+..=|.+ +.+|.-+.-.-. -++ +.+..+.+++ .+++.+++-++.+...
T Consensus 160 rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~ 229 (256)
T smart00672 160 RLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFI 229 (256)
T ss_pred hHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 9999999999988877544322322 445655532221 123 6666666655 3555666666666543
No 69
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=86.58 E-value=7.6 Score=37.77 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=74.4
Q ss_pred cEEEEEecCCCchhHHHHHHHhccC------CCCeEEeecccCcccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceE
Q 048345 174 SVFAFFAGGAHGDVRKLLFQHWKDK------DDEIQVHEYLPKGQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVP 247 (335)
Q Consensus 174 ~~l~~F~G~~~~~iR~~L~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP 247 (335)
++-+.++|++++.-.+...+.+++. +..++.....+ -.+..+.+.++.+.+.-.=+........|+|++|.||
T Consensus 305 ~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIp 383 (465)
T KOG1387|consen 305 PIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIP 383 (465)
T ss_pred CceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCC-HHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceE
Confidence 4567899999875433333333221 23344332221 2356788999999998766666667899999999999
Q ss_pred EEeecccccCCCC-CCCCCcEEEE-eccCCHH---HHHHHHcCCCHHHHHHHHHHHHHhhhhce
Q 048345 248 VIISDHYALPFSD-VLDWSQFSIQ-IPVDKIL---EIKTILKGVSDDKYLELQMNVVQVQRHFV 306 (335)
Q Consensus 248 Vii~d~~~lPf~~-~idw~~~~v~-i~~~~~~---~l~~~L~~i~~~~~~~m~~~~~~~~~~f~ 306 (335)
|+=.-. =|--| +.+|..-..- +.+++.. .+..++. ++.++...||++-+.-..+|.
T Consensus 384 i~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~-~~~~~r~~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 384 IVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVK-LNYDERNMMRRNARKSLARFG 444 (465)
T ss_pred EEeCCC--CCceeeeeccCCccceeecCChHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHhh
Confidence 976532 12222 3445433222 2233332 2444443 355667888888776544543
No 70
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=86.51 E-value=7.4 Score=37.82 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=49.3
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCC------CCCCCcEEEEeccCCHHHHHHHHcCC
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSD------VLDWSQFSIQIPVDKILEIKTILKGV 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~------~idw~~~~v~i~~~~~~~l~~~L~~i 286 (335)
+..+.|+.|...+.+.|. .-+.|||.+|| |||+.+. .|-++ +++ ....+.+ .+..+|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 578999999999987762 23899999997 7888763 23322 122 3444443 4555555544433
Q ss_pred --C-HHHHHHHHHHHHH
Q 048345 287 --S-DDKYLELQMNVVQ 300 (335)
Q Consensus 287 --~-~~~~~~m~~~~~~ 300 (335)
+ ++...+|+++.++
T Consensus 345 l~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 345 FGDKSDELEAMSENALK 361 (382)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 2 5667777776655
No 71
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=86.47 E-value=1.9 Score=46.40 Aligned_cols=85 Identities=9% Similarity=0.112 Sum_probs=58.6
Q ss_pred eeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC------CHHHHHHHH
Q 048345 222 KFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV------SDDKYLELQ 295 (335)
Q Consensus 222 ~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i------~~~~~~~m~ 295 (335)
..+++|.=..+...-+.|||++|| |||.++.=- ..++|.-..-.+.|+..+..++.+.|..+ +++.+.+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG--~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGG--PLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCC--HHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456677656666788999999998 555555321 12344445667778888887766665532 577888888
Q ss_pred HHHH-HhhhhceecC
Q 048345 296 MNVV-QVQRHFVLNR 309 (335)
Q Consensus 296 ~~~~-~~~~~f~~~~ 309 (335)
++.+ ++.++|.|..
T Consensus 722 ~~a~~rV~~~FSW~~ 736 (784)
T TIGR02470 722 QGGLQRIYEKYTWKI 736 (784)
T ss_pred HHHHHHHHHhCCHHH
Confidence 8865 4678999974
No 72
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=86.03 E-value=8.9 Score=36.81 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=52.9
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCC--CHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGV--SDD 289 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~ 289 (335)
.++...|+.+.+.+.+.|. -+.||+.+|| |||.....- -.++.+. ....+.++ .+..+|.+.++.+ +++
T Consensus 266 ~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~-~~~e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 266 LDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTT-ERPETVE-AGTNKLVG-TDKENITKAAKRLLTDPD 336 (365)
T ss_pred HHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCC-CChHHHh-cCceEEeC-CCHHHHHHHHHHHHhChH
Confidence 4677889999998877642 2799999997 788753211 1223343 33444454 4555555555443 222
Q ss_pred HHHHHHHHHHHhhhhceecCCCCCCCHHHHHHHHHH
Q 048345 290 KYLELQMNVVQVQRHFVLNRPAKPFDALHMVLHSVW 325 (335)
Q Consensus 290 ~~~~m~~~~~~~~~~f~~~~~~~~~dAf~~~~~~l~ 325 (335)
...+|.++. .+-+.++|...|++.|.
T Consensus 337 ~~~~~~~~~----------~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 337 EYKKMSNAS----------NPYGDGEASERIVEELL 362 (365)
T ss_pred HHHHhhhcC----------CCCcCchHHHHHHHHHH
Confidence 222222211 12244678888777653
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=85.43 E-value=11 Score=36.46 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=46.6
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCC-----CCCCCcEEEEeccCCHHHHHHHHcCC-
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSD-----VLDWSQFSIQIPVDKILEIKTILKGV- 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~-----~idw~~~~v~i~~~~~~~l~~~L~~i- 286 (335)
+..+.|+.|...+...| ..-+.||+.+|+ |||+.+.. |-.+ .+.-..+.+.. .+..++.+.++.+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~--~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPV--PGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCC--CCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 35688899997665333 234889999997 68776532 1111 11223344433 4555555544443
Q ss_pred -CHHHHHHHHHHHHHh
Q 048345 287 -SDDKYLELQMNVVQV 301 (335)
Q Consensus 287 -~~~~~~~m~~~~~~~ 301 (335)
+++...+|.++.+++
T Consensus 337 ~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 337 QDDMKLLQMKEAMKSL 352 (380)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 466777888776664
No 74
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.87 E-value=5.6 Score=34.05 Aligned_cols=78 Identities=19% Similarity=0.108 Sum_probs=47.9
Q ss_pred cEEEEEecCCCchhH-HHHHHHhccCCCCeEEeecccCcccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeec
Q 048345 174 SVFAFFAGGAHGDVR-KLLFQHWKDKDDEIQVHEYLPKGQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISD 252 (335)
Q Consensus 174 ~~l~~F~G~~~~~iR-~~L~~~~~~~~~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d 252 (335)
++-+.+.|....... +.+..... ....+.+.+...........++.|..+++|......+..++|||.+|| |||.++
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~ 212 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALL-LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATD 212 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcC-CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcC
Confidence 567777776653322 22111111 123444444332344566666679999999987777889999999987 555665
Q ss_pred c
Q 048345 253 H 253 (335)
Q Consensus 253 ~ 253 (335)
.
T Consensus 213 ~ 213 (229)
T cd01635 213 V 213 (229)
T ss_pred C
Confidence 4
No 75
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=83.50 E-value=1.1 Score=43.36 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=42.4
Q ss_pred ccHHHhhhcceeEeecCCCC-----CCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC
Q 048345 212 QDYMKTMRRSKFCLCPSGFE-----VASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG 285 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~-----~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~ 285 (335)
.+..+.++.+..|+.|--.+ .....++|+|++|+ |||.++ +.++.+...-.+ +...+..++.+.|+.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~-~~~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVV-LIADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEE-EeCCCHHHHHHHHHH
Confidence 35778899999999985422 22357999999997 787654 233333333233 334466666555555
No 76
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=82.90 E-value=2.7 Score=39.65 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=51.4
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCC-----CCCCCCcEEEEeccCC--HHHHHHHHcC
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFS-----DVLDWSQFSIQIPVDK--ILEIKTILKG 285 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~-----~~idw~~~~v~i~~~~--~~~l~~~L~~ 285 (335)
++.+.|..+..++.+.| ..-++||+.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 68899999999998766 235899999996 7777642100000 1233345566666554 5665555544
Q ss_pred C--CHHHHHHHHHHHHH
Q 048345 286 V--SDDKYLELQMNVVQ 300 (335)
Q Consensus 286 i--~~~~~~~m~~~~~~ 300 (335)
+ +++...+|.++.+.
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 2 35566667776654
No 77
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=81.82 E-value=8 Score=37.82 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=51.8
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCC-----CCCcEEEEeccCCHHHHHHHHcCC-
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVL-----DWSQFSIQIPVDKILEIKTILKGV- 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~i-----dw~~~~v~i~~~~~~~l~~~L~~i- 286 (335)
+..+.|+.|+.++..+|. .-+.||+.+|+ |||+.+.. |=++.. .=..+++.+ .+..++.+.|..+
T Consensus 266 ~~~~~~~~aDl~I~k~gg----~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~--~~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPGG----ITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIA--DTPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCch----HHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEe--CCHHHHHHHHHHHh
Confidence 567889999999885442 34899999996 88887642 322221 123344443 2444444444433
Q ss_pred -CHHHHHHHHHHHHHhhhh
Q 048345 287 -SDDKYLELQMNVVQVQRH 304 (335)
Q Consensus 287 -~~~~~~~m~~~~~~~~~~ 304 (335)
+++.+.+|+++.....+.
T Consensus 337 ~~~~~~~~m~~~~~~~~~~ 355 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIK 355 (391)
T ss_pred cCHHHHHHHHHHHHHhcCC
Confidence 467788888888876443
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.80 E-value=11 Score=40.11 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=56.2
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCH------HHHHHHHcCC
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKI------LEIKTILKGV 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~------~~l~~~L~~i 286 (335)
+....|+.++..+.|.-......-++|||.+|| |||.++.-- ..++|.=..-.+.++..+. ..|.++|...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 466778888888877544455678999999996 888887422 2344544555666765553 2355555543
Q ss_pred CHHHHHHHHHHHHH-hhhhceec
Q 048345 287 SDDKYLELQMNVVQ-VQRHFVLN 308 (335)
Q Consensus 287 ~~~~~~~m~~~~~~-~~~~f~~~ 308 (335)
.. -.+|+++.+. +.+.|.|.
T Consensus 661 ~~--~~~l~~~ar~~a~~~FS~~ 681 (694)
T PRK15179 661 AA--DPGIARKAADWASARFSLN 681 (694)
T ss_pred hc--cHHHHHHHHHHHHHhCCHH
Confidence 21 2345555554 45678875
No 79
>PLN00142 sucrose synthase
Probab=80.72 E-value=4.5 Score=43.66 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=57.6
Q ss_pred ceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC------CCHHHHHHH
Q 048345 221 SKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG------VSDDKYLEL 294 (335)
Q Consensus 221 S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~------i~~~~~~~m 294 (335)
+..+++|.=..+...-+.|||++|| |||.++.--+ .++|.-..-.+.++..+..++.+.|.. -+++...+|
T Consensus 667 aDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~m 743 (815)
T PLN00142 667 KGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKI 743 (815)
T ss_pred CCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455667544555677999999997 7877764222 244544566777888887775555432 257778888
Q ss_pred HHHHH-HhhhhceecC
Q 048345 295 QMNVV-QVQRHFVLNR 309 (335)
Q Consensus 295 ~~~~~-~~~~~f~~~~ 309 (335)
.++.+ ++.+.|.|..
T Consensus 744 g~~Ar~rv~e~FSWe~ 759 (815)
T PLN00142 744 SDAGLQRIYECYTWKI 759 (815)
T ss_pred HHHHHHHHHHhCCHHH
Confidence 88864 5678899874
No 80
>PLN02316 synthase/transferase
Probab=80.36 E-value=9.7 Score=42.26 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=59.7
Q ss_pred HhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCC------------cEEEEeccCCHHHHHHHH
Q 048345 216 KTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWS------------QFSIQIPVDKILEIKTIL 283 (335)
Q Consensus 216 ~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~------------~~~v~i~~~~~~~l~~~L 283 (335)
..++.|.+.++|.=..+...-..|||++||+||+-..+ -+| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 68999999999977778888899999999999996543 111 1123442 346678887776654443
Q ss_pred cC-CC--HHHHHHHHHHHHH-hhhhceecCCC
Q 048345 284 KG-VS--DDKYLELQMNVVQ-VQRHFVLNRPA 311 (335)
Q Consensus 284 ~~-i~--~~~~~~m~~~~~~-~~~~f~~~~~~ 311 (335)
.. +. .+.-..|++..++ +.+.|.|....
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A 1024 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRVMEQDWSWNRPA 1024 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 33 21 1223334444444 35779987543
No 81
>PRK10125 putative glycosyl transferase; Provisional
Probab=79.50 E-value=8.4 Score=38.06 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=49.5
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTI 282 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~ 282 (335)
+..+.++.+...+.|.-......-+.|||++|| |||.+|-=-. .++++= .-.+.++..|...|.+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~--~Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAA--REVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCCh--HHhEeC-CcEEEECCCCHHHHHhc
Confidence 467888889988888766666678999999996 8988875332 245543 35788899998888764
No 82
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=78.70 E-value=2.7 Score=33.11 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCCCCCccccHHHHHHHHhcCCCC-cccCCCCCccEEEe
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSP-FMARHPDEAHAFFV 57 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~-~~T~dPeeAdlF~V 57 (335)
.+|..+++.+| .+...|.. .. -.|.+|++||+++|
T Consensus 7 ~GC~~N~~Dse-~i~~~l~~--~G~~~~~~~e~AD~iii 42 (98)
T PF00919_consen 7 LGCQMNQYDSE-RIASILQA--AGYEIVDDPEEADVIII 42 (98)
T ss_pred CCCcccHHHHH-HHHHHHHh--cCCeeecccccCCEEEE
Confidence 34666788888 45555555 44 46999999999987
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=78.29 E-value=13 Score=35.84 Aligned_cols=103 Identities=10% Similarity=0.137 Sum_probs=58.5
Q ss_pred cEEEEEecCCCchhHHHHHHHhccCC-CCeEEeecccCcccHHHhhhcceeEeecCCC---CCCChhHHHHHHhCceEEE
Q 048345 174 SVFAFFAGGAHGDVRKLLFQHWKDKD-DEIQVHEYLPKGQDYMKTMRRSKFCLCPSGF---EVASPRLVEAIYVGCVPVI 249 (335)
Q Consensus 174 ~~l~~F~G~~~~~iR~~L~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~S~Fcl~p~G~---~~~s~rl~dal~~GcIPVi 249 (335)
.+-+.+.|. |..|..|.+..+..+ .++......-...+..+.|+.+..++.|... .....-++|||++|| |||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PVV 337 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVC 337 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CEE
Confidence 467778874 445555555444221 2344433212346788999999999876321 112456999999997 888
Q ss_pred eecccccCCCCCCCCCcEEEEeccCCHHHHHHHH
Q 048345 250 ISDHYALPFSDVLDWSQFSIQIPVDKILEIKTIL 283 (335)
Q Consensus 250 i~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L 283 (335)
.++.=- ..++|.=....+.++ +..++.+.|
T Consensus 338 a~~~gg--~~eiv~~g~~G~lv~--~~~~la~~i 367 (371)
T PLN02275 338 AVSYSC--IGELVKDGKNGLLFS--SSSELADQL 367 (371)
T ss_pred EecCCC--hHHHccCCCCeEEEC--CHHHHHHHH
Confidence 876321 234443344444454 344444443
No 84
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=73.52 E-value=6.8 Score=38.51 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=56.9
Q ss_pred cHHHhhhcceeEeecCCC-CCCChhHHHHHHhCceEEEeecccccCCCCC---CCCCcEEEEeccCCHHHHHHHHcCC--
Q 048345 213 DYMKTMRRSKFCLCPSGF-EVASPRLVEAIYVGCVPVIISDHYALPFSDV---LDWSQFSIQIPVDKILEIKTILKGV-- 286 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~~---idw~~~~v~i~~~~~~~l~~~L~~i-- 286 (335)
+..+.++.|+.|+++... ..+..-+.||+++|| |||.++... -+.++ +.-..+.+ +..|..+|.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 467888999987775432 112345899999997 888876421 12221 11123333 345555555555442
Q ss_pred CHHHHHHHHHHHHHhhhhceecCCCCCCCHHHHHHHHH
Q 048345 287 SDDKYLELQMNVVQVQRHFVLNRPAKPFDALHMVLHSV 324 (335)
Q Consensus 287 ~~~~~~~m~~~~~~~~~~f~~~~~~~~~dAf~~~~~~l 324 (335)
+++...+|.++.+...+.. .+|.+.++..+
T Consensus 388 ~~~~~~~m~~~a~~~~~~~--------~~~~~~~~~~l 417 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQN--------QGALQRTLQLL 417 (425)
T ss_pred CHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHH
Confidence 3666777777776654322 25555555544
No 85
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=72.20 E-value=25 Score=33.11 Aligned_cols=83 Identities=11% Similarity=0.182 Sum_probs=52.0
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeeccc-------ccCCCCCCCCCcEEEEeccC--CHHHHHHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHY-------ALPFSDVLDWSQFSIQIPVD--KILEIKTI 282 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~-------~lPf~~~idw~~~~v~i~~~--~~~~l~~~ 282 (335)
.+..+.|..++..+++.|. .-+.|||.+|+ |||+.+.- ..+.+.+.+ ....+.++.. +..+|.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHH
Confidence 3677889999999987762 34899999997 56664321 011112222 4566677665 66666666
Q ss_pred HcCC--CHHHHHHHHHHHHH
Q 048345 283 LKGV--SDDKYLELQMNVVQ 300 (335)
Q Consensus 283 L~~i--~~~~~~~m~~~~~~ 300 (335)
|+.+ +++...+|+++.+.
T Consensus 318 i~~ll~~~~~~~~~~~~~~~ 337 (350)
T cd03785 318 LLELLSDPERLKAMAEAARS 337 (350)
T ss_pred HHHHhcCHHHHHHHHHHHHh
Confidence 5543 45666777776654
No 86
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=70.48 E-value=7.4 Score=39.14 Aligned_cols=91 Identities=10% Similarity=-0.012 Sum_probs=60.3
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCce---EEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC--
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCV---PVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG-- 285 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcI---PVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~-- 285 (335)
..+..+.++.|.-++.|.-......-..|||++||= |||+++.--.+- . ..-++.++..+..++.+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~--~---~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAE--E---LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchh--h---cCCCEEECCCCHHHHHHHHHHHH
Confidence 346788899999999876544445568899999995 589987432111 1 234678888888877665543
Q ss_pred -CCHHHHHHHHHHHHHhhhhce
Q 048345 286 -VSDDKYLELQMNVVQVQRHFV 306 (335)
Q Consensus 286 -i~~~~~~~m~~~~~~~~~~f~ 306 (335)
.++++..+|.++.++....|.
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~~~ 447 (460)
T cd03788 426 TMPLEERRERHRKLREYVRTHD 447 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHhCC
Confidence 356666666666665544443
No 87
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=69.20 E-value=26 Score=34.63 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=77.0
Q ss_pred CCCcEEEEEecCCCch-hHHHHHHHhccCCC--CeEEeecc-------cCcccHHHhhhcceeEeecCCCCCCChhHHHH
Q 048345 171 QGASVFAFFAGGAHGD-VRKLLFQHWKDKDD--EIQVHEYL-------PKGQDYMKTMRRSKFCLCPSGFEVASPRLVEA 240 (335)
Q Consensus 171 ~~R~~l~~F~G~~~~~-iR~~L~~~~~~~~~--~v~~~~~~-------~~~~~~~~~~~~S~Fcl~p~G~~~~s~rl~da 240 (335)
..|.-.++|+|+..+. .|..|+..-.+... +..+.... .....-.+...+-+|=+...|.+. |.||.--
T Consensus 155 ~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~~-S~Rlkyl 233 (395)
T PF05686_consen 155 EDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNAW-SGRLKYL 233 (395)
T ss_pred hhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCcee-ehhHHHH
Confidence 5577788999998755 59998875443222 22222111 011234566678899999999875 7899999
Q ss_pred HHhCceEEEeecccccCCC-CCCCCCcEEEEeccCCHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 048345 241 IYVGCVPVIISDHYALPFS-DVLDWSQFSIQIPVDKILEIKTILKGV--SDDKYLELQMNVVQV 301 (335)
Q Consensus 241 l~~GcIPVii~d~~~lPf~-~~idw~~~~v~i~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~~ 301 (335)
|++|++.+.....+.-=|. .+.+|.-+.-.-..++..+|.+.++=. .+++..++=+++...
T Consensus 234 L~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f 297 (395)
T PF05686_consen 234 LACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRF 297 (395)
T ss_pred HcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHH
Confidence 9999998777654422222 245676664322224555555554433 244555555555443
No 88
>PLN02846 digalactosyldiacylglycerol synthase
Probab=65.07 E-value=59 Score=32.93 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=28.5
Q ss_pred HHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeeccc
Q 048345 214 YMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHY 254 (335)
Q Consensus 214 ~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~ 254 (335)
..+.++.++..+.|.-......-+.|||++|+ |||..|.-
T Consensus 294 ~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~~ 333 (462)
T PLN02846 294 ADPLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANHP 333 (462)
T ss_pred HHHHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecCC
Confidence 33577777777766554444567999999997 88888753
No 89
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=64.88 E-value=14 Score=33.04 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=50.5
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCCC--HHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGVS--DDK 290 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i~--~~~ 290 (335)
+..+.++.+...+.|.-......-+.||+++| +|||.++.- . ..+.+.-....+.+...+..++.+.+..+- .+.
T Consensus 269 ~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~~-~-~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 345 (381)
T COG0438 269 ELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDVG-G-IPEVVEDGETGLLVPPGDVEELADALEQLLEDPEL 345 (381)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCCC-C-hHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHH
Confidence 45567887899999843322223389999999 999888753 1 222222221222344435555555544432 233
Q ss_pred HHHHHH-HHHHhhhhceec
Q 048345 291 YLELQM-NVVQVQRHFVLN 308 (335)
Q Consensus 291 ~~~m~~-~~~~~~~~f~~~ 308 (335)
..++.+ ....+...|.|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~ 364 (381)
T COG0438 346 REELGEAARERVEEEFSWE 364 (381)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 444443 233344567664
No 90
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=62.35 E-value=23 Score=32.96 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=26.8
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEee
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIIS 251 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~ 251 (335)
+..+.|+.|...++..|.+ ++|++.+| +|+|+-
T Consensus 234 ~m~~lm~~aDl~Is~~G~T-----~~E~~a~g-~P~i~i 266 (279)
T TIGR03590 234 NMAELMNEADLAIGAAGST-----SWERCCLG-LPSLAI 266 (279)
T ss_pred HHHHHHHHCCEEEECCchH-----HHHHHHcC-CCEEEE
Confidence 5779999999999987722 89999999 677654
No 91
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=62.20 E-value=13 Score=35.36 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=50.9
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecc-cccC-----CCCCCCCCcEEEEeccCC--HHHHHHHHc
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDH-YALP-----FSDVLDWSQFSIQIPVDK--ILEIKTILK 284 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~-~~lP-----f~~~idw~~~~v~i~~~~--~~~l~~~L~ 284 (335)
++.+.|..|+.+++..| ..-++||+++|+ |||+.+. .... ..+.+--....+.++.++ ...|.+.++
T Consensus 245 ~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~ 319 (357)
T PRK00726 245 DMAAAYAAADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLL 319 (357)
T ss_pred hHHHHHHhCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHH
Confidence 57789999999998766 244899999997 5555432 1000 012222234567777766 556655555
Q ss_pred CC--CHHHHHHHHHHHHH
Q 048345 285 GV--SDDKYLELQMNVVQ 300 (335)
Q Consensus 285 ~i--~~~~~~~m~~~~~~ 300 (335)
.+ +++...+|+++.++
T Consensus 320 ~ll~~~~~~~~~~~~~~~ 337 (357)
T PRK00726 320 ELLSDPERLEAMAEAARA 337 (357)
T ss_pred HHHcCHHHHHHHHHHHHh
Confidence 43 35666777777554
No 92
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=61.84 E-value=33 Score=34.58 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=55.6
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceE----EEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC-
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVP----VIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG- 285 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP----Vii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~- 285 (335)
..+....++.+.-|++|.-.....--..|||++|+ | ||+++.--.+ +.+. -++.|+..|..++.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 45678889999999997644444566899999997 7 8888743211 1232 3678889888877665544
Q ss_pred --CCHHHHHHHHHHHHH
Q 048345 286 --VSDDKYLELQMNVVQ 300 (335)
Q Consensus 286 --i~~~~~~~m~~~~~~ 300 (335)
++.++..++.+++++
T Consensus 420 L~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 420 LTMPLEEREERHRAMMD 436 (456)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 355555554444444
No 93
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=55.54 E-value=18 Score=34.76 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=49.3
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCC----CCCCCCcE------------E--EEeccC
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFS----DVLDWSQF------------S--IQIPVD 274 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~----~~idw~~~------------~--v~i~~~ 274 (335)
+..+.++.|..++++.|. -..||+.+|| |||+.... -||. +.....++ + +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 467888999999998653 3459999997 78777443 1222 11111111 1 112333
Q ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHhhhhc
Q 048345 275 KILEIKTILKGV--SDDKYLELQMNVVQVQRHF 305 (335)
Q Consensus 275 ~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~f 305 (335)
+..+|.+.+..+ +++...+|.++...+.+.+
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 444454444433 4667778888877766554
No 94
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.27 E-value=18 Score=36.24 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=29.9
Q ss_pred eEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 6 KIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
|||+..+ ||..++|.+| .+...|.. ..| .|+++++||+++|
T Consensus 8 ~~~i~t~--------GC~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADiiii 49 (448)
T PRK14333 8 SYWITTF--------GCQMNKADSE-RMAGILED--MGYQWAEDELQADLVLY 49 (448)
T ss_pred EEEEEEc--------CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 5666554 5667889888 45556665 555 6889999999988
No 95
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.90 E-value=15 Score=24.95 Aligned_cols=39 Identities=36% Similarity=0.710 Sum_probs=27.9
Q ss_pred hcceeEeecCCC-CCCChhHHHHHHhCceEEEeecccccCCCC
Q 048345 219 RRSKFCLCPSGF-EVASPRLVEAIYVGCVPVIISDHYALPFSD 260 (335)
Q Consensus 219 ~~S~Fcl~p~G~-~~~s~rl~dal~~GcIPVii~d~~~lPf~~ 260 (335)
-+|+||+.|--. +..|+|-|-.-..||--.-+. .||.++
T Consensus 7 fqsrfcifpltfkssasprkfltnvtgccsatvt---rlplsn 46 (59)
T PF07038_consen 7 FQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVT---RLPLSN 46 (59)
T ss_pred EeeeeEEEEeeeccCCChHHHhhcccceeeeeEE---eccchh
Confidence 369999999876 456789888888999654332 456553
No 96
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.75 E-value=28 Score=34.98 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=26.0
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
-||..+++.+| .+...|.. ..| .|.++++||+.+|
T Consensus 14 lGC~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADviii 49 (445)
T PRK14340 14 FGCQMNQADSE-IITALLQD--EGYVPAASEEDADIVLL 49 (445)
T ss_pred cCCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 35667889888 44555655 455 6889999999988
No 97
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=42.79 E-value=90 Score=33.93 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=54.2
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceE----EEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC--
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVP----VIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG-- 285 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIP----Vii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~-- 285 (335)
.++...++.+.-|++|.=.....--..|+|++|+ | +|+++---.+ +.+ ..-++.|++.|..++.+.|..
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 4678999999999998644333455899999998 5 7777632111 112 345889999898876554432
Q ss_pred -CCHHHHHHHHHHHHH
Q 048345 286 -VSDDKYLELQMNVVQ 300 (335)
Q Consensus 286 -i~~~~~~~m~~~~~~ 300 (335)
+++++..++.+.+.+
T Consensus 442 ~m~~~er~~r~~~~~~ 457 (797)
T PLN03063 442 NMSDEERETRHRHNFQ 457 (797)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 455555444444443
No 98
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=42.38 E-value=49 Score=30.76 Aligned_cols=108 Identities=17% Similarity=0.352 Sum_probs=61.2
Q ss_pred CCCcEEEEEecCCCchhHHHHHHHhccCC-CCeEEeecc------------c-CcccHHHhhhcceeEeecCCCCCCChh
Q 048345 171 QGASVFAFFAGGAHGDVRKLLFQHWKDKD-DEIQVHEYL------------P-KGQDYMKTMRRSKFCLCPSGFEVASPR 236 (335)
Q Consensus 171 ~~R~~l~~F~G~~~~~iR~~L~~~~~~~~-~~v~~~~~~------------~-~~~~~~~~~~~S~Fcl~p~G~~~~s~r 236 (335)
..+.+|++|-|.-.+ .+.+.++..+ ..+.+.... . ...++.+.|+.|+.+++-.|.+.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t---- 262 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTT---- 262 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHH----
Confidence 456677777776544 4444444322 233332110 0 12468899999999999999753
Q ss_pred HHHHHHhCceEEEeeccc---ccCC-CCCCCCCcEEEEeccCCH--HHHHHHHcCCC
Q 048345 237 LVEAIYVGCVPVIISDHY---ALPF-SDVLDWSQFSIQIPVDKI--LEIKTILKGVS 287 (335)
Q Consensus 237 l~dal~~GcIPVii~d~~---~lPf-~~~idw~~~~v~i~~~~~--~~l~~~L~~i~ 287 (335)
+.|++.+|+ |+++-+.. ...+ ...+.=....+.++..++ .+|.+.|+++|
T Consensus 263 ~~Ea~~~g~-P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~ 318 (318)
T PF13528_consen 263 ISEALALGK-PALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERLP 318 (318)
T ss_pred HHHHHHcCC-CEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcCC
Confidence 789999886 66654421 1111 001333344555554444 45666666654
No 99
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.48 E-value=34 Score=34.41 Aligned_cols=34 Identities=6% Similarity=0.115 Sum_probs=25.4
Q ss_pred CCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 21 GPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 21 ~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
||..++|.+| .+...|.. ..| .|.+|++||+.+|
T Consensus 9 GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADv~ii 43 (455)
T PRK14335 9 GCQMNVAESA-SMEQLLLA--RGWTKAVDAETCDVLII 43 (455)
T ss_pred CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 5667889888 45556655 444 6889999999988
No 100
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.40 E-value=36 Score=34.02 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=29.5
Q ss_pred eEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 6 KIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
|||+..+ ||..++|.+| .+...|.. ..| .|+++++||+.+|
T Consensus 2 ~~~i~t~--------GC~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADi~ii 43 (440)
T PRK14334 2 KAHIITY--------GCQMNEYDTH-LVESELVS--LGAEIVDSVDEADFVLV 43 (440)
T ss_pred eEEEEec--------CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 5666554 4666888888 45556655 455 6888999999988
No 101
>PLN02501 digalactosyldiacylglycerol synthase
Probab=40.16 E-value=1e+02 Score=33.11 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecc
Q 048345 215 MKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDH 253 (335)
Q Consensus 215 ~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~ 253 (335)
.+.++.++..+.|.-......-+.|||++|| |||.+|.
T Consensus 613 ~~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 613 DDSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 4577777776666544444577999999997 8888875
No 102
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=39.07 E-value=45 Score=33.39 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=31.2
Q ss_pred CceEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 4 RFKIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 4 ~lkIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
.=|||+..+ +|..+++.+| .+...|+. ..| .|.++++||+++|=
T Consensus 7 ~~~~~i~t~--------GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~aD~ivin 51 (440)
T PRK14862 7 APKIGFVSL--------GCPKALVDSE-RILTQLRA--EGYEISPSYDGADLVIVN 51 (440)
T ss_pred CCEEEEEEc--------CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 336777664 4666888888 44556655 455 68889999999983
No 103
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.05 E-value=43 Score=33.61 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred eEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCcccCCCCCccEEEe
Q 048345 6 KIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPFMARHPDEAHAFFV 57 (335)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~~T~dPeeAdlF~V 57 (335)
|||+..++ |..+++.+| .+...|+. ..|...++++||+.+|
T Consensus 5 ~~~i~tlG--------C~~N~~dse-~~~~~l~~--~G~~~~~~~~ADiiii 45 (446)
T PRK14337 5 TFHIITFG--------CQMNVNDSD-WLARALVA--RGFTEAPEEEARVFIV 45 (446)
T ss_pred EEEEEeeC--------CCCcHHHHH-HHHHHHHH--CCCEECCcCCCCEEEE
Confidence 67777644 666889888 55566666 5666556799999988
No 104
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.99 E-value=41 Score=33.59 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=29.7
Q ss_pred eEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 6 KIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
|||+..+ ||..++|.+| .+...|.. ..| .|.++++||+.+|=
T Consensus 2 ~~~i~t~--------GC~~N~~ds~-~~~~~l~~--~G~~~~~~~~~aDviiiN 44 (437)
T PRK14331 2 KYYIKTF--------GCQMNFNDSE-KIKGILQT--LGYEPADDWEEADLILVN 44 (437)
T ss_pred EEEEEec--------CCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 6676664 4666888888 44555655 455 68889999999883
No 105
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=37.47 E-value=39 Score=33.61 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=26.8
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
-||..++|.+| .+...|+. ..| .|.++++||+.+|=
T Consensus 7 ~GC~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADviiin 43 (420)
T TIGR01578 7 YGCTLNNGDSE-IMKNSLAA--YGHELVNNAEEADLAILN 43 (420)
T ss_pred cCCCCcHHHHH-HHHHHHHH--CCCEECCCcccCCEEEEE
Confidence 35667889888 55566666 555 68899999999883
No 106
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=36.22 E-value=42 Score=33.34 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
-+|..+++.+| .+...|.. ..| .|+++++||+..|-
T Consensus 7 ~GC~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 7 YGCQMNEADSE-IMAGLLKE--AGYEVTDDPEEADVIIIN 43 (429)
T ss_pred cCCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 35677889888 55566665 555 68889999999984
No 107
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=35.73 E-value=3.8e+02 Score=27.39 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=58.1
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecc----cccCCCCCCCC----CcEEEEeccCCHHHHHHHHc
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDH----YALPFSDVLDW----SQFSIQIPVDKILEIKTILK 284 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~----~~lPf~~~idw----~~~~v~i~~~~~~~l~~~L~ 284 (335)
-+.+.++.|.+=|.|-=..|..---..||+.|||||+-... -+.++. .| ..-.+.+.+.+...+...|+
T Consensus 361 la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~---~~~~~~~gtGf~f~~~~~~~l~~al~ 437 (487)
T COG0297 361 LAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRN---EWLIQGVGTGFLFLQTNPDHLANALR 437 (487)
T ss_pred HHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCcc---chhccCceeEEEEecCCHHHHHHHHH
Confidence 36688889999999866666666667899999999988753 233332 23 33445555556666544443
Q ss_pred C------CCHHHHHHHHHHHHHhhhhceecCCCCCC
Q 048345 285 G------VSDDKYLELQMNVVQVQRHFVLNRPAKPF 314 (335)
Q Consensus 285 ~------i~~~~~~~m~~~~~~~~~~f~~~~~~~~~ 314 (335)
. .++.....+|.+... ..|.|+.....|
T Consensus 438 rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y 471 (487)
T COG0297 438 RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEY 471 (487)
T ss_pred HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHH
Confidence 2 122224444443333 567777655443
No 108
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.45 E-value=52 Score=33.27 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
-||..+++.+| .+...|.. ..| .|.++++||+.+|=
T Consensus 31 ~GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~ADiviiN 67 (467)
T PRK14329 31 YGCQMNFADSE-IVASILQM--AGYNTTENLEEADLVLVN 67 (467)
T ss_pred cCCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 45777899888 55556655 455 67889999999883
No 109
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.17 E-value=41 Score=33.82 Aligned_cols=35 Identities=20% Similarity=0.503 Sum_probs=26.3
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc--ccCCCCCccEEEe
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF--MARHPDEAHAFFV 57 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~--~T~dPeeAdlF~V 57 (335)
.||..+.|.+| .+...|+. ..| .|++|+|||+.+|
T Consensus 10 ~GC~~N~~DSe-~m~~~L~~--~G~~~~~~~~~eADvvii 46 (437)
T COG0621 10 LGCQMNLYDSE-RMAGLLEA--AGYEELVEDPEEADVVII 46 (437)
T ss_pred cCCCccHHHHH-HHHHHHHH--cCCccccCCcccCCEEEE
Confidence 46777889988 44555554 344 7999999999987
No 110
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.11 E-value=58 Score=32.83 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
-||..+++.+| .+...|.. ..| .|.++++||+.+|
T Consensus 28 ~GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~AD~~ii 63 (459)
T PRK14338 28 VGCQMNVSDSE-RLEAALQG--VGYSPAERPEDADFIVL 63 (459)
T ss_pred cCCCCCHHHHH-HHHHHHHH--CcCEECCCcccCCEEEE
Confidence 46777899988 44555655 455 6889999999988
No 111
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.84 E-value=67 Score=32.99 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=25.9
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
-||..+++.+| .+...|+. ..| .|+++++||+.+|
T Consensus 74 ~GC~~N~~Dse-~~~~~L~~--~Gy~~~~~~~~ADviii 109 (509)
T PRK14327 74 YGCQMNEHDTE-VMAGIFEA--LGYEPTDDTEDADVILL 109 (509)
T ss_pred CCCCccHHHHH-HHHHHHHH--CcCEECCCcCCCCEEEE
Confidence 46767888888 55556665 455 5888999998887
No 112
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.14 E-value=59 Score=32.73 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
-||..+++.+|. +...|+. ..| .|.++++||+.+|=
T Consensus 18 ~GC~~N~~dse~-~~~~l~~--~G~~~~~~~~~ADvviiN 54 (449)
T PRK14332 18 YGCQMNEYDSGI-VSSLMRD--AEYSTSNDPENSDIIFLN 54 (449)
T ss_pred cCCCCCHHHHHH-HHHHHHH--CcCEECCCcccCCEEEEE
Confidence 467778888884 4466665 455 57899999999883
No 113
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.82 E-value=60 Score=32.44 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=29.5
Q ss_pred eEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 6 KIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
|||+..+ +|..++|.+| .+...|.. ..| .|+++++||+.+|=
T Consensus 3 ~~~~~t~--------GC~~N~~ds~-~~~~~l~~--~G~~~~~~~~~ADv~iiN 45 (439)
T PRK14328 3 KYFIETY--------GCQMNEEDSE-KLAGMLKS--MGYERTENREEADIIIFN 45 (439)
T ss_pred EEEEEEe--------CCCCCHHHHH-HHHHHHHH--CcCEECCCcCcCCEEEEe
Confidence 4666654 5667889888 44555555 455 68889999999883
No 114
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=31.72 E-value=36 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=26.8
Q ss_pred cceeEeecCCCCCCChhHHHHHHhCceEEEee
Q 048345 220 RSKFCLCPSGFEVASPRLVEAIYVGCVPVIIS 251 (335)
Q Consensus 220 ~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~ 251 (335)
+-+|||+-.|.+..-...||+=..+.|||+-.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 45799998888766678899999999999865
No 115
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=31.33 E-value=25 Score=33.73 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=60.9
Q ss_pred CCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048345 228 SGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGVSDDKYLELQMNVVQ 300 (335)
Q Consensus 228 ~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i~~~~~~~m~~~~~~ 300 (335)
.|-+...+.+.+.+.---|+|=+|---.--|.|+++++++-|....+....|.++=|+++++++.++.+..--
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 3556667889999998888888886666678899999999999999999989999899999888887776543
No 116
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.21 E-value=75 Score=32.51 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEe
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFV 57 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~V 57 (335)
.+|..++|.+| .+...|+. ..| .|.++++||+++|
T Consensus 21 ~GC~~N~~dse-~~~~~L~~--~G~~~~~~~e~ADvvvi 56 (502)
T PRK14326 21 YGCQMNVHDSE-RLAGLLEA--AGYVRAAEGQDADVVVF 56 (502)
T ss_pred cCCCCcHHHHH-HHHHHHHH--CCCEECCCcCCCCEEEE
Confidence 45777889888 55566665 555 5788999999988
No 117
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=30.47 E-value=60 Score=32.43 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCCCCCccccHHHHHHHHhcCCC-Cc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLS-PF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S-~~-~T~dPeeAdlF~VP 58 (335)
-||..++|.+| .+...|.. . .| .|.++++||+.+|=
T Consensus 7 ~GC~~N~~dse-~~~~~l~~--~~G~~~~~~~~~aDv~iiN 44 (438)
T TIGR01574 7 YGCQMNVRDSE-HMAALLTA--KEGYALTEDAKEADVLLIN 44 (438)
T ss_pred CCCCCcHHHHH-HHHHHHHh--cCCcEECCCcccCCEEEEe
Confidence 35777889888 55566665 5 55 68889999999883
No 118
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.35 E-value=79 Score=31.61 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred eEEEeCCCCCCCccCCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 6 KIWAYTEGELPIAHVGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 6 kIYvY~~~~~~~~~~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
|||+..++ |..++|.+| .+...|.. ..| .|.++++||+++|=
T Consensus 5 ~~~i~t~G--------C~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aDvviin 47 (444)
T PRK14325 5 KLYIKTYG--------CQMNEYDSS-KMADLLGA--EGYELTDDPEEADLILLN 47 (444)
T ss_pred EEEEEEcC--------CCCcHHHHH-HHHHHHHH--CcCEECCCcCCCCEEEEE
Confidence 67777654 666888888 44555555 444 68889999999883
No 119
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.13 E-value=74 Score=31.64 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=25.9
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
-+|..+++.+| .+...|+. ..| .|.++++||+.+|=
T Consensus 9 ~GC~~N~~dse-~~~~~l~~--~G~~~~~~~~~AD~viiN 45 (418)
T PRK14336 9 IGCQMNQAESE-RLGRLFEL--WGYSLADKAEDAELVLVN 45 (418)
T ss_pred cCCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 35667889888 44555555 445 68899999999883
No 120
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=29.02 E-value=41 Score=28.32 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.4
Q ss_pred CCCccccHHHHHHHHhcCCCCcccCCCCCccEEEeee
Q 048345 23 TKHIYAIEGHFIDEMESGLSPFMARHPDEAHAFFVPI 59 (335)
Q Consensus 23 ~~~~y~~E~~f~~~l~~~~S~~~T~dPeeAdlF~VP~ 59 (335)
.+..|.+|.+ .-+.|.||.+||+.+|--
T Consensus 30 ~sP~YDaErf---------gI~~v~sPRhADiLlVTG 57 (148)
T COG3260 30 LSPRYDAERF---------GIKVVNSPRHADILLVTG 57 (148)
T ss_pred cCcccchHHh---------eeEEeCCCccccEEEEec
Confidence 5578999865 789999999999998843
No 121
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=28.94 E-value=64 Score=32.10 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCCCCCccccHHHHHHHHhcCCCCc-ccCCCCCccEEEee
Q 048345 20 VGPTKHIYAIEGHFIDEMESGLSPF-MARHPDEAHAFFVP 58 (335)
Q Consensus 20 ~~~~~~~y~~E~~f~~~l~~~~S~~-~T~dPeeAdlF~VP 58 (335)
-+|..++|.+| .+...|.. ..| .|.++++||+.+|=
T Consensus 7 ~GC~~N~~ds~-~~~~~l~~--~g~~~~~~~~~aD~viin 43 (430)
T TIGR01125 7 LGCPKNLVDSE-VMLGILRE--AGYEVTPNYEDADYVIVN 43 (430)
T ss_pred CCCCCcHHHHH-HHHHHHHH--CcCEECCCcccCCEEEEe
Confidence 45767888888 45555555 455 68899999999884
No 122
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=28.60 E-value=2.4e+02 Score=27.46 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=55.0
Q ss_pred cHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCC---C------CCCCCcEEEEeccCCH--HHHHH
Q 048345 213 DYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFS---D------VLDWSQFSIQIPVDKI--LEIKT 281 (335)
Q Consensus 213 ~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~---~------~idw~~~~v~i~~~~~--~~l~~ 281 (335)
+..+.|+.|+-++|=.|.+- +.|+...| +|+|+-. +|.. + .+-=...++.+.++++ .++.+
T Consensus 245 dm~~~~~~ADLvIsRaGa~T----i~E~~a~g-~P~IliP---~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~ 316 (357)
T COG0707 245 DMAALLAAADLVISRAGALT----IAELLALG-VPAILVP---YPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316 (357)
T ss_pred hHHHHHHhccEEEeCCcccH----HHHHHHhC-CCEEEeC---CCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHH
Confidence 57889999999999888542 67776665 7887743 2322 0 1112456888888883 45666
Q ss_pred HHcCCC--HHHHHHHHHHHHHh
Q 048345 282 ILKGVS--DDKYLELQMNVVQV 301 (335)
Q Consensus 282 ~L~~i~--~~~~~~m~~~~~~~ 301 (335)
.|.++- ++++.+|.++.+.+
T Consensus 317 ~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 317 LILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHhcCHHHHHHHHHHHHhc
Confidence 665543 58999998888774
No 123
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.28 E-value=82 Score=19.15 Aligned_cols=26 Identities=15% Similarity=0.487 Sum_probs=19.8
Q ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHH
Q 048345 274 DKILEIKTILKG--VSDDKYLELQMNVV 299 (335)
Q Consensus 274 ~~~~~l~~~L~~--i~~~~~~~m~~~~~ 299 (335)
+.+..|.+.+.+ |+++++.++++++.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 456667777766 89999999888764
No 124
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=25.10 E-value=95 Score=26.05 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhce
Q 048345 280 KTILKGVSDDKYLELQMNVVQVQRHFV 306 (335)
Q Consensus 280 ~~~L~~i~~~~~~~m~~~~~~~~~~f~ 306 (335)
.+.|+.++.+|++..|++++..++.+.
T Consensus 7 l~~l~tM~a~ElEd~R~~G~d~RR~Lt 33 (144)
T PRK13701 7 LNVLQTMSAQEYEDIRAAGSDERRELT 33 (144)
T ss_pred HHHHhccCHHHHHHHHHHhHHHHHHhH
Confidence 578999999999999999999988765
No 125
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=24.38 E-value=1.1e+02 Score=29.83 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=53.2
Q ss_pred ccHHHhhhcceeEeecCCCCCCChhHHHHHHhCceEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcCCCHHHH
Q 048345 212 QDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGCVPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKGVSDDKY 291 (335)
Q Consensus 212 ~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~GcIPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i~~~~~ 291 (335)
.+|.+.+++........-....---+.-.|.+| +||+++..- ||...+-=..+.|....+ .++...+
T Consensus 257 ~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G-~~v~L~~~n--p~~~~l~~~~ipVlf~~d----------~L~~~~v 323 (360)
T PF07429_consen 257 DEYLALLSRCDLGIFNHNRQQGIGNICLLLQLG-KKVFLSRDN--PFWQDLKEQGIPVLFYGD----------ELDEALV 323 (360)
T ss_pred HHHHHHHHhCCEEEEeechhhhHhHHHHHHHcC-CeEEEecCC--hHHHHHHhCCCeEEeccc----------cCCHHHH
Confidence 479999999988887654433223467777777 699998763 232211112333444433 3577889
Q ss_pred HHHHHHHHHhh-hhceecCC
Q 048345 292 LELQMNVVQVQ-RHFVLNRP 310 (335)
Q Consensus 292 ~~m~~~~~~~~-~~f~~~~~ 310 (335)
.++|+|+..+- +...|-.|
T Consensus 324 ~ea~rql~~~dk~~iaFf~p 343 (360)
T PF07429_consen 324 REAQRQLANVDKQQIAFFAP 343 (360)
T ss_pred HHHHHHHhhCcccceeeeCC
Confidence 99999999873 34444433
No 126
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.27 E-value=1.2e+02 Score=28.81 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=48.2
Q ss_pred EeecCCCCCCCh----hHHHHHHhCceEEEeecccc-----cCCCCCCCCCcEEEEeccCCHHHHHHHHcCCCHHHHHHH
Q 048345 224 CLCPSGFEVASP----RLVEAIYVGCVPVIISDHYA-----LPFSDVLDWSQFSIQIPVDKILEIKTILKGVSDDKYLEL 294 (335)
Q Consensus 224 cl~p~G~~~~s~----rl~dal~~GcIPVii~d~~~-----lPf~~~idw~~~~v~i~~~~~~~l~~~L~~i~~~~~~~m 294 (335)
+.||.|.+.... ..=.|+.+|..|+.=-++-. -||. +| + ..+.|-+|..+.....+.+.+++++++
T Consensus 210 sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~--ld-~--~~~~pv~~~l~~q~Rf~~L~~~~~~~~ 284 (299)
T PRK11865 210 QPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLH--LD-R--RTRKPIEEYLKVQGRFKHLTEEDIEIL 284 (299)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCccc--cc-c--cCCCCHHHHHhhCcchhcCCHHHHHHH
Confidence 355666543322 12347888999998765411 2333 44 2 334455555566667777899999999
Q ss_pred HHHHHHhhhhc
Q 048345 295 QMNVVQVQRHF 305 (335)
Q Consensus 295 ~~~~~~~~~~f 305 (335)
|+.+.+-++.+
T Consensus 285 q~~v~~~~~~~ 295 (299)
T PRK11865 285 QKYIDEKWKEL 295 (299)
T ss_pred HHHHHHHHHHH
Confidence 99988876654
No 127
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=23.68 E-value=1.4e+02 Score=31.85 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=44.8
Q ss_pred cccHHHhhhcceeEeecCCCCCCChhHHHHHHhCc---eEEEeecccccCCCCCCCCCcEEEEeccCCHHHHHHHHcC
Q 048345 211 GQDYMKTMRRSKFCLCPSGFEVASPRLVEAIYVGC---VPVIISDHYALPFSDVLDWSQFSIQIPVDKILEIKTILKG 285 (335)
Q Consensus 211 ~~~~~~~~~~S~Fcl~p~G~~~~s~rl~dal~~Gc---IPVii~d~~~lPf~~~idw~~~~v~i~~~~~~~l~~~L~~ 285 (335)
..+....++.+.-|++|.=.....--..|||++|| =++|++...-- ..++.+ ++.|++.|..++.+.+..
T Consensus 352 ~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~-~~~l~~----~llv~P~d~~~la~ai~~ 424 (726)
T PRK14501 352 FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA-AAELAE----ALLVNPNDIEGIAAAIKR 424 (726)
T ss_pred HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccch-hHHhCc----CeEECCCCHHHHHHHHHH
Confidence 45688999999999987644333456889999987 23555553110 011221 678899898876665543
No 128
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=21.28 E-value=1.4e+02 Score=23.24 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=25.8
Q ss_pred HHHHHHcC----CCHHHHHHHHHHHHHhhhhcee
Q 048345 278 EIKTILKG----VSDDKYLELQMNVVQVQRHFVL 307 (335)
Q Consensus 278 ~l~~~L~~----i~~~~~~~m~~~~~~~~~~f~~ 307 (335)
+|.+||+. ++++++..||+-+..+.+|..=
T Consensus 42 rIv~IL~K~k~dltddD~~hMrkVV~yv~rhlaq 75 (92)
T PF11338_consen 42 RIVEILRKRKTDLTDDDYEHMRKVVGYVKRHLAQ 75 (92)
T ss_pred HHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHhc
Confidence 58899976 6789999999999999888764
Done!