BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048347
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZUQ|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type B-Derivative, Lc-B-Gs-Hn-B
Length = 906
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 67 VKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLI 126
+ N+ + C+ Y +MK ++PL A+ ++LD D +KKN L+ +NK YLI
Sbjct: 806 INNFINGCSVSY-----------LMKKMIPL-AVEKLLDFDNTLKKNLLNYIDENKLYLI 853
Query: 127 VIQDVWRGDIWDFLKEALP 145
+ + + +LK +P
Sbjct: 854 GSAEYEKSKVNKYLKTIMP 872
>pdb|2XHL|B Chain B, Structure Of A Functional Derivative Of Clostridium
Botulinum Neurotoxin Type B
Length = 433
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 67 VKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLI 126
+ N+ + C+ Y +MK ++PL A+ ++LD D +KKN L+ +NK YLI
Sbjct: 333 INNFINGCSVSY-----------LMKKMIPL-AVEKLLDFDNTLKKNLLNYIDENKLYLI 380
Query: 127 VIQDVWRGDIWDFLKEALP 145
+ + + +LK +P
Sbjct: 381 GSAEYEKSKVNKYLKTIMP 399
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 67 VKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLI 126
+ N+ + C+ Y +MK ++PL A+ ++LD D +KKN L+ +NK YLI
Sbjct: 770 INNFINGCSVSY-----------LMKKMIPL-AVEKLLDFDNTLKKNLLNYIDENKLYLI 817
Query: 127 VIQDVWRGDIWDFLKEALP 145
+ + + +LK +P
Sbjct: 818 GSAEYEKSKVNKYLKTIMP 836
>pdb|1UAN|A Chain A, Crystal Structure Of The Conserved Protein Tt1542 From
Thermus Thermophilus Hb8
pdb|1UAN|B Chain B, Crystal Structure Of The Conserved Protein Tt1542 From
Thermus Thermophilus Hb8
Length = 227
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 145 PDHQNGSRILTALIHIVGLSSCRLEND 171
PDH SR+ A +H+ GL LE +
Sbjct: 109 PDHTAASRLAVAAVHLAGLRKAPLEGE 135
>pdb|1CD1|A Chain A, Cd1(Mouse) Antigen Presenting Molecule
pdb|1CD1|C Chain C, Cd1(Mouse) Antigen Presenting Molecule
Length = 315
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 215 LIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGF 266
L RG ++ K DLE ++ P+ +P S++ R+LVC GF
Sbjct: 167 LFVRGLLEAGKSDLEKQEKPVAWLSSVP--------SSAHGHRQLVCHVSGF 210
>pdb|3HE6|A Chain A, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|A Chain A, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|A Chain A, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|A Chain A, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|A Chain A, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|A Chain A, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|A Chain A, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3RUG|A Chain A, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
pdb|3RUG|C Chain C, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
pdb|3SCM|A Chain A, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|A Chain A, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|A Chain A, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|A Chain A, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
pdb|3AU1|A Chain A, Crystal Structure Of Mouse Cd1d In Complex With
Ganglioside Gd3
pdb|3TN0|A Chain A, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3TO4|A Chain A, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
pdb|3QI9|A Chain A, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
pdb|4EI5|A Chain A, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|E Chain E, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
Length = 302
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 215 LIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGF 266
L RG ++ K DLE ++ P+ +P S++ R+LVC GF
Sbjct: 170 LFVRGLLEAGKSDLEKQEKPVAWLSSVP--------SSAHGHRQLVCHVSGF 213
>pdb|1Z5L|A Chain A, Structure Of A Highly Potent Short-chain Galactosyl
Ceramide Agonist Bound To Cd1d
pdb|1Z5L|C Chain C, Structure Of A Highly Potent Short-chain Galactosyl
Ceramide Agonist Bound To Cd1d
pdb|2AKR|A Chain A, Structural Basis Of Sulfatide Presentation By Mouse Cd1d
pdb|2AKR|C Chain C, Structural Basis Of Sulfatide Presentation By Mouse Cd1d
pdb|2GAZ|A Chain A, Mycobacterial Lipoglycan Presentation By Cd1d
pdb|2Q7Y|A Chain A, Structure Of The Endogenous Inkt Cell Ligand Igb3 Bound To
Mcd1d
pdb|2Q7Y|C Chain C, Structure Of The Endogenous Inkt Cell Ligand Igb3 Bound To
Mcd1d
pdb|3G08|A Chain A, Crystal Structure Of The Alpha-Galactosylceramide Analog
Och In Complex With Mouse Cd1d
pdb|3O8X|A Chain A, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|A Chain A, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3MA7|C Chain C, Crystal Structure Of Cardiolipin Bound To Mouse Cd1d
pdb|3MA7|A Chain A, Crystal Structure Of Cardiolipin Bound To Mouse Cd1d
pdb|3QUX|A Chain A, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|A Chain A, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|A Chain A, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|A Chain A, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3T1F|A Chain A, Crystal Structure Of The Mouse Cd1d-Glc-Dag-S2 Complex
pdb|3TA3|A Chain A, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|A Chain A, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|E Chain E, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|4ELM|A Chain A, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|C Chain C, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 285
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 215 LIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGF 266
L RG ++ K DLE ++ P+ +P S++ R+LVC GF
Sbjct: 170 LFVRGLLEAGKSDLEKQEKPVAWLSSVP--------SSAHGHRQLVCHVSGF 213
>pdb|3UBX|A Chain A, Crystal Structure Of The Mouse Cd1d-C20:2-Agalcer-L363 Mab
Fab Complex
pdb|3UBX|D Chain D, Crystal Structure Of The Mouse Cd1d-C20:2-Agalcer-L363 Mab
Fab Complex
Length = 286
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 215 LIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGF 266
L RG ++ K DLE ++ P+ +P S++ R+LVC GF
Sbjct: 170 LFVRGLLEAGKSDLEKQEKPVAWLSSVP--------SSAHGHRQLVCHVSGF 213
>pdb|1ZHN|A Chain A, Crystal Structure Of Mouse Cd1d Bound To The Self Ligand
Phosphatidylcholine
Length = 273
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 215 LIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGF 266
L RG ++ K DLE ++ P+ +P S++ R+LVC GF
Sbjct: 164 LFVRGLLEAGKSDLEKQEKPVAWLSSVP--------SSAHGHRQLVCHVSGF 207
>pdb|2FIK|A Chain A, Structure Of A Microbial Glycosphingolipid Bound To Mouse
Cd1d
pdb|3GML|A Chain A, Structure Of Mouse Cd1d In Complex With C6ph
pdb|3GMM|A Chain A, Structure Of Mouse Cd1d In Complex With C8ph
pdb|3GMN|A Chain A, Structure Of Mouse Cd1d In Complex With C10ph
pdb|3GMO|A Chain A, Structure Of Mouse Cd1d In Complex With C8phf
pdb|3GMP|A Chain A, Structure Of Mouse Cd1d In Complex With Pbs-25
pdb|3GMQ|A Chain A, Structure Of Mouse Cd1d Expressed In Sf9 Cells, No Ligand
Added
pdb|3GMR|A Chain A, Structure Of Mouse Cd1d In Complex With C8ph, Different
Space Group
Length = 287
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 215 LIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGF 266
L RG ++ K DLE ++ P+ +P S++ R+LVC GF
Sbjct: 170 LFVRGLLEAGKSDLEKQEKPVAWLSSVP--------SSAHGHRQLVCHVSGF 213
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 80 QLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDIWDF 139
+ +LD +LD + P A EI+ + E++K +N R + ++ VW+ +
Sbjct: 174 KTTLDQLLDIVQGPDYPTEA--EIITSRAEIRK-----IYENGRGSVRMRAVWKKEDGAV 226
Query: 140 LKEALPDHQNGSRIL 154
+ ALP +G+R+L
Sbjct: 227 VISALPHQVSGARVL 241
>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 205 ESTAEEYLKELIDRGFIQVNKKDLELEDDPMPAPEKLPHLKVLKLKRSSYS-GRKLVCGH 263
ES EE++K ++R ++ + + P +K + K+L+L +S + G KL CG
Sbjct: 311 ESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGG 370
Query: 264 GGFPRQ 269
G R+
Sbjct: 371 KGLGRK 376
>pdb|2O3O|A Chain A, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|B Chain B, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|C Chain C, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|D Chain D, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|E Chain E, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|F Chain F, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|G Chain G, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|H Chain H, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|I Chain I, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|J Chain J, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|K Chain K, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
pdb|2O3O|L Chain L, Crystal Structure Of The Sensor Histidine Kinase Regulator
Yyci From Bacillus Subtitlis
Length = 254
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 226 KDLELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKM 285
K+ E+ + + K H+ L + + G ++ F ++EI LK L +
Sbjct: 8 KEYEVIKNDVEHDXKADHITYEGLNKEATEGYRITANQKSFSKEEIEALKDQKPLXDXPS 67
Query: 286 ETGAMQKLKSLIVNPCAYLRK 306
+ + LK NP A +K
Sbjct: 68 DDHKVTSLKXKFANPIALSKK 88
>pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Allergen Equ C 1
Length = 159
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 168 LENDEKIRLDLVPPKGKLRARQLYQLWIAEAFIPDNCESTAEEYLKELIDRGFIQVNKKD 227
ENDE I L LV K R QL++ + E PD EE++K + RG ++ N D
Sbjct: 92 FENDEHIILYLVNFD-KDRPFQLFEFYARE---PDVSPEIKEEFVKIVQKRGIVKENIID 147
Query: 228 L 228
L
Sbjct: 148 L 148
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 112 KNTLHNYLKNKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILTALIHIVG 162
KNTL N +KN I+ + + + WD + EA +++GS T +++G
Sbjct: 101 KNTLTNVMKNHITTIMTRYIGKIRAWDVVNEAF--NEDGSLRQTVFNNVIG 149
>pdb|3KG9|A Chain A, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
pdb|3KG9|B Chain B, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
Length = 296
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 128 IQDVWRGDIWDFLKEALP--------DHQNGSRILTALIHIVGLSSCRLENDEKIRLDLV 179
I+ +W+G K ALP D+Q +L A + I+G + E D+K L +
Sbjct: 180 IKQLWKGQGKALGKIALPEEIAGQATDYQLHPALLDAALQILGHAIGNTETDDKAYLPVG 239
Query: 180 PPKGKLRARQLYQLWIAEAFIPDNC 204
K K + + Q+W A IP+N
Sbjct: 240 IDKLKQYRQTITQVW-AIVEIPENT 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,441,432
Number of Sequences: 62578
Number of extensions: 423826
Number of successful extensions: 901
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 22
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)