Query 048347
Match_columns 351
No_of_seqs 188 out of 2730
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-45 6.7E-50 374.5 17.1 301 21-326 161-629 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-29 8.2E-34 267.3 24.0 141 12-161 178-336 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 1.8E-27 3.9E-32 218.4 10.5 138 23-161 1-141 (287)
4 PRK00411 cdc6 cell division co 99.0 1.1E-08 2.3E-13 98.2 14.1 118 13-134 25-150 (394)
5 TIGR02928 orc1/cdc6 family rep 98.8 2.9E-08 6.3E-13 94.3 11.9 118 12-134 9-141 (365)
6 PF13191 AAA_16: AAA ATPase do 98.8 2.5E-08 5.4E-13 85.0 7.9 74 19-96 1-84 (185)
7 PF13401 AAA_22: AAA domain; P 98.8 3.5E-08 7.7E-13 79.3 8.1 108 40-155 3-121 (131)
8 TIGR03015 pepcterm_ATPase puta 98.6 9.1E-07 2E-11 80.3 14.5 95 41-142 43-145 (269)
9 cd01128 rho_factor Transcripti 98.6 8.5E-08 1.8E-12 85.7 6.8 92 41-133 16-114 (249)
10 PF05729 NACHT: NACHT domain 98.5 4.2E-07 9E-12 75.8 9.0 111 42-161 1-132 (166)
11 cd00009 AAA The AAA+ (ATPases 98.5 1.6E-06 3.4E-11 70.2 11.5 56 21-80 1-56 (151)
12 PTZ00202 tuzin; Provisional 98.5 2.3E-06 4.9E-11 81.0 13.3 106 11-128 255-367 (550)
13 PRK09376 rho transcription ter 98.5 2E-07 4.2E-12 87.3 5.5 88 42-134 170-268 (416)
14 PLN03210 Resistant to P. syrin 98.4 3.4E-07 7.5E-12 99.1 7.1 84 240-326 632-715 (1153)
15 KOG0617 Ras suppressor protein 98.4 1.6E-08 3.4E-13 83.3 -2.5 87 234-324 71-159 (264)
16 PF01637 Arch_ATPase: Archaeal 98.4 3.1E-07 6.8E-12 81.0 4.8 43 20-64 1-43 (234)
17 PTZ00112 origin recognition co 98.4 5.8E-06 1.3E-10 84.1 13.7 119 13-134 750-881 (1164)
18 COG1474 CDC6 Cdc6-related prot 98.3 4.5E-06 9.8E-11 78.8 11.2 116 13-134 12-135 (366)
19 KOG4658 Apoptotic ATPase [Sign 98.3 2.2E-07 4.8E-12 96.8 2.0 87 238-326 567-653 (889)
20 PLN00113 leucine-rich repeat r 98.3 7.4E-07 1.6E-11 95.3 5.7 86 238-324 184-269 (968)
21 KOG0617 Ras suppressor protein 98.3 5.6E-08 1.2E-12 80.0 -2.3 95 234-330 94-193 (264)
22 PF13173 AAA_14: AAA domain 98.3 1.4E-06 3E-11 70.0 5.5 97 41-159 2-99 (128)
23 TIGR00767 rho transcription te 98.3 3.7E-06 8.1E-11 79.2 8.6 92 42-134 169-267 (415)
24 PLN00113 leucine-rich repeat r 98.2 1.1E-06 2.3E-11 94.1 5.4 90 236-326 158-247 (968)
25 PRK04841 transcriptional regul 98.1 3.2E-05 7E-10 82.1 13.4 136 13-159 9-162 (903)
26 PF13855 LRR_8: Leucine rich r 98.1 5E-06 1.1E-10 57.4 4.7 58 267-326 1-60 (61)
27 PRK13342 recombination factor 98.1 1.1E-05 2.3E-10 78.1 8.0 104 18-155 12-124 (413)
28 KOG2028 ATPase related to the 98.0 1.9E-05 4.2E-10 72.5 8.4 90 40-155 161-254 (554)
29 PLN03150 hypothetical protein; 98.0 6E-06 1.3E-10 83.8 5.4 81 244-325 420-500 (623)
30 PRK05564 DNA polymerase III su 98.0 7.7E-05 1.7E-09 69.4 12.3 121 18-160 4-134 (313)
31 PLN03150 hypothetical protein; 98.0 6.5E-06 1.4E-10 83.5 5.4 92 234-326 434-526 (623)
32 KOG0472 Leucine-rich repeat pr 98.0 2.5E-06 5.5E-11 79.0 2.1 87 237-326 430-539 (565)
33 KOG2543 Origin recognition com 98.0 4.8E-05 1E-09 70.4 10.1 118 16-138 4-131 (438)
34 PRK14963 DNA polymerase III su 98.0 7.8E-06 1.7E-10 80.5 4.9 133 18-157 14-154 (504)
35 PRK11331 5-methylcytosine-spec 97.9 4E-05 8.8E-10 73.4 9.0 117 18-145 175-298 (459)
36 PRK12402 replication factor C 97.9 6E-05 1.3E-09 70.6 10.2 45 18-64 15-59 (337)
37 PRK04195 replication factor C 97.9 5.3E-05 1.1E-09 74.7 9.8 48 17-64 13-62 (482)
38 PRK07003 DNA polymerase III su 97.9 9.6E-05 2.1E-09 74.8 11.1 137 18-160 16-160 (830)
39 PRK06893 DNA replication initi 97.9 3.4E-05 7.3E-10 68.4 6.8 37 41-79 39-75 (229)
40 PF13855 LRR_8: Leucine rich r 97.9 2.5E-05 5.5E-10 53.8 4.7 58 242-302 1-60 (61)
41 PRK00440 rfc replication facto 97.9 0.00014 3E-09 67.6 11.2 45 18-64 17-61 (319)
42 COG2256 MGS1 ATPase related to 97.9 4.3E-05 9.3E-10 71.2 7.3 87 40-155 47-136 (436)
43 KOG0444 Cytoskeletal regulator 97.8 5.1E-06 1.1E-10 81.0 1.2 93 234-330 95-188 (1255)
44 PRK14961 DNA polymerase III su 97.8 0.00021 4.6E-09 67.8 11.7 54 8-64 8-61 (363)
45 PLN03025 replication factor C 97.8 0.00013 2.8E-09 68.1 9.8 45 18-64 13-57 (319)
46 PRK13341 recombination factor 97.8 7.4E-05 1.6E-09 76.5 8.6 50 18-71 28-80 (725)
47 PRK15386 type III secretion pr 97.8 5.6E-05 1.2E-09 71.7 7.0 101 228-337 57-183 (426)
48 PRK08118 topology modulation p 97.8 1.1E-05 2.3E-10 68.0 1.9 35 42-76 2-37 (167)
49 PHA02544 44 clamp loader, smal 97.8 0.00015 3.4E-09 67.3 9.7 47 17-64 20-66 (316)
50 TIGR00635 ruvB Holliday juncti 97.8 6.5E-05 1.4E-09 69.5 6.9 47 18-64 4-53 (305)
51 PF05621 TniB: Bacterial TniB 97.7 0.00053 1.1E-08 62.3 12.0 141 15-161 31-193 (302)
52 PRK14957 DNA polymerase III su 97.7 0.0003 6.6E-09 69.7 11.3 129 8-159 8-159 (546)
53 PRK12323 DNA polymerase III su 97.7 0.00027 5.9E-09 70.6 10.9 134 18-159 16-164 (700)
54 smart00382 AAA ATPases associa 97.7 0.00029 6.2E-09 56.2 9.4 87 42-135 3-91 (148)
55 KOG0472 Leucine-rich repeat pr 97.7 4.3E-06 9.4E-11 77.5 -1.5 88 234-326 220-308 (565)
56 PRK14949 DNA polymerase III su 97.7 0.00022 4.9E-09 73.5 10.5 147 7-159 7-159 (944)
57 TIGR02903 spore_lon_C ATP-depe 97.7 0.00023 4.9E-09 72.1 10.4 135 18-155 154-327 (615)
58 PRK14960 DNA polymerase III su 97.7 0.0003 6.6E-09 70.4 10.9 136 18-159 15-158 (702)
59 TIGR03420 DnaA_homol_Hda DnaA 97.7 9.7E-05 2.1E-09 65.1 6.7 53 23-79 22-74 (226)
60 COG2909 MalT ATP-dependent tra 97.7 0.00048 1E-08 69.9 12.2 139 15-161 16-172 (894)
61 PF12799 LRR_4: Leucine Rich r 97.7 6.1E-05 1.3E-09 48.2 3.8 40 267-308 1-40 (44)
62 PRK14969 DNA polymerase III su 97.6 0.00064 1.4E-08 67.6 12.5 134 18-159 16-159 (527)
63 TIGR01242 26Sp45 26S proteasom 97.6 0.00021 4.5E-09 67.9 8.7 57 13-71 117-184 (364)
64 PRK14956 DNA polymerase III su 97.6 0.00018 3.8E-09 69.8 7.7 143 7-158 9-160 (484)
65 PF14580 LRR_9: Leucine-rich r 97.6 8.3E-05 1.8E-09 62.8 4.8 86 236-326 35-124 (175)
66 PRK00080 ruvB Holliday junctio 97.6 0.00027 5.9E-09 66.1 8.5 49 16-64 23-74 (328)
67 KOG2227 Pre-initiation complex 97.6 0.00042 9.1E-09 65.9 9.5 113 16-134 148-268 (529)
68 PRK08691 DNA polymerase III su 97.6 0.00067 1.5E-08 68.5 11.3 46 18-64 16-61 (709)
69 PRK06645 DNA polymerase III su 97.6 0.00076 1.6E-08 66.4 11.4 132 18-157 21-166 (507)
70 KOG0444 Cytoskeletal regulator 97.5 1.2E-05 2.6E-10 78.5 -1.1 112 235-348 71-184 (1255)
71 PF04665 Pox_A32: Poxvirus A32 97.5 0.00021 4.6E-09 63.2 6.7 34 43-78 15-48 (241)
72 PRK14955 DNA polymerase III su 97.5 0.00088 1.9E-08 64.4 11.4 47 17-64 15-61 (397)
73 PRK08116 hypothetical protein; 97.5 0.00026 5.6E-09 64.3 7.3 74 42-132 115-188 (268)
74 PRK10536 hypothetical protein; 97.5 0.00064 1.4E-08 60.6 9.2 43 18-64 55-97 (262)
75 PRK14958 DNA polymerase III su 97.5 0.001 2.2E-08 65.8 11.6 145 7-159 7-159 (509)
76 PRK14951 DNA polymerase III su 97.5 0.001 2.2E-08 66.9 11.7 138 18-158 16-163 (618)
77 PF05673 DUF815: Protein of un 97.5 0.00084 1.8E-08 59.2 9.7 106 14-146 23-133 (249)
78 PRK14962 DNA polymerase III su 97.5 0.001 2.2E-08 65.2 11.3 46 18-64 14-59 (472)
79 TIGR02397 dnaX_nterm DNA polym 97.5 0.0013 2.9E-08 62.0 11.9 46 18-64 14-59 (355)
80 PRK07994 DNA polymerase III su 97.5 0.00066 1.4E-08 68.5 10.1 133 18-160 16-160 (647)
81 PRK07261 topology modulation p 97.5 0.00025 5.3E-09 59.9 6.0 22 43-64 2-23 (171)
82 KOG0532 Leucine-rich repeat (L 97.4 1.3E-05 2.9E-10 77.4 -2.5 111 234-350 113-229 (722)
83 PRK14964 DNA polymerase III su 97.4 0.0013 2.9E-08 64.3 11.2 131 18-156 13-153 (491)
84 PRK05896 DNA polymerase III su 97.4 0.00098 2.1E-08 66.5 10.1 56 6-64 6-61 (605)
85 CHL00095 clpC Clp protease ATP 97.4 0.00052 1.1E-08 72.0 8.7 45 18-64 179-223 (821)
86 PRK12608 transcription termina 97.4 0.00047 1E-08 64.7 7.4 102 28-132 121-230 (380)
87 PRK14970 DNA polymerase III su 97.4 0.0019 4.1E-08 61.4 11.7 47 17-64 16-62 (367)
88 PF14580 LRR_9: Leucine-rich r 97.4 0.00017 3.8E-09 60.8 4.0 83 238-326 15-99 (175)
89 PRK14952 DNA polymerase III su 97.4 0.002 4.2E-08 64.6 11.9 132 18-157 13-156 (584)
90 TIGR02639 ClpA ATP-dependent C 97.4 0.00074 1.6E-08 70.0 8.9 45 18-64 182-226 (731)
91 PF00448 SRP54: SRP54-type pro 97.4 0.0004 8.7E-09 59.9 5.9 54 42-97 2-58 (196)
92 PF00308 Bac_DnaA: Bacterial d 97.3 0.00074 1.6E-08 59.4 7.6 120 18-157 9-138 (219)
93 PRK07940 DNA polymerase III su 97.3 0.0023 5E-08 61.2 11.5 46 18-63 5-58 (394)
94 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00021 4.5E-09 66.7 4.0 49 17-65 50-102 (361)
95 PRK08727 hypothetical protein; 97.3 0.00076 1.6E-08 59.9 7.4 35 42-78 42-76 (233)
96 PRK03992 proteasome-activating 97.3 0.00074 1.6E-08 64.7 7.7 51 14-64 127-188 (389)
97 PRK12377 putative replication 97.3 0.0011 2.3E-08 59.4 8.1 73 41-132 101-173 (248)
98 PRK07764 DNA polymerase III su 97.3 0.002 4.4E-08 67.1 11.3 134 18-158 15-159 (824)
99 PRK14950 DNA polymerase III su 97.3 0.0025 5.3E-08 64.4 11.7 146 2-157 2-158 (585)
100 cd01393 recA_like RecA is a b 97.3 0.0021 4.5E-08 56.6 9.8 100 30-132 8-124 (226)
101 PRK10865 protein disaggregatio 97.3 0.00083 1.8E-08 70.6 8.3 45 18-64 178-222 (857)
102 PF13207 AAA_17: AAA domain; P 97.3 0.00019 4.2E-09 56.5 2.8 22 43-64 1-22 (121)
103 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00047 1E-08 62.2 5.4 99 42-142 70-184 (274)
104 PRK14954 DNA polymerase III su 97.2 0.0025 5.4E-08 64.3 11.1 46 18-64 16-61 (620)
105 PRK06696 uridine kinase; Valid 97.2 0.00041 8.9E-09 61.2 4.9 42 23-64 3-45 (223)
106 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00096 2.1E-08 70.0 8.3 46 17-64 186-231 (852)
107 TIGR00678 holB DNA polymerase 97.2 0.0055 1.2E-07 52.4 11.8 38 121-158 95-135 (188)
108 PRK09361 radB DNA repair and r 97.2 0.00097 2.1E-08 58.8 7.2 56 29-86 11-67 (225)
109 PF05496 RuvB_N: Holliday junc 97.2 0.00036 7.9E-09 60.7 4.2 54 16-71 22-78 (233)
110 PF00004 AAA: ATPase family as 97.2 0.00017 3.6E-09 57.5 2.1 21 44-64 1-21 (132)
111 TIGR02881 spore_V_K stage V sp 97.2 0.0027 5.9E-08 57.4 10.1 46 19-64 7-65 (261)
112 KOG1514 Origin recognition com 97.2 0.0034 7.4E-08 62.6 11.2 136 13-155 391-544 (767)
113 PRK07952 DNA replication prote 97.2 0.0015 3.3E-08 58.3 8.1 93 28-138 86-180 (244)
114 PF12799 LRR_4: Leucine Rich r 97.2 0.0004 8.7E-09 44.4 3.2 35 291-326 1-35 (44)
115 TIGR00602 rad24 checkpoint pro 97.2 0.00077 1.7E-08 68.0 6.8 49 16-64 82-133 (637)
116 PRK09111 DNA polymerase III su 97.2 0.0037 8E-08 63.0 11.4 47 17-64 23-69 (598)
117 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0011 2.4E-08 69.9 7.8 45 18-64 173-217 (852)
118 TIGR02237 recomb_radB DNA repa 97.1 0.0012 2.6E-08 57.5 6.7 48 39-88 10-58 (209)
119 KOG0618 Serine/threonine phosp 97.1 7.3E-05 1.6E-09 76.1 -1.1 91 229-324 370-461 (1081)
120 PF00485 PRK: Phosphoribulokin 97.1 0.0022 4.8E-08 55.2 8.2 82 43-126 1-87 (194)
121 KOG0618 Serine/threonine phosp 97.1 9.3E-05 2E-09 75.3 -0.7 85 236-324 39-123 (1081)
122 TIGR03346 chaperone_ClpB ATP-d 97.1 0.004 8.6E-08 65.7 11.3 119 17-145 564-692 (852)
123 TIGR03689 pup_AAA proteasome A 97.1 0.0014 3.1E-08 64.4 7.4 47 18-64 182-239 (512)
124 PRK07667 uridine kinase; Provi 97.1 0.00072 1.6E-08 58.3 4.7 39 26-64 2-40 (193)
125 CHL00181 cbbX CbbX; Provisiona 97.1 0.0066 1.4E-07 55.6 11.3 47 18-64 23-82 (287)
126 KOG3665 ZYG-1-like serine/thre 97.1 0.00023 5.1E-09 72.7 1.8 84 240-326 146-231 (699)
127 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0023 4.9E-08 67.3 9.0 118 18-145 566-693 (852)
128 PRK14959 DNA polymerase III su 97.0 0.0043 9.3E-08 62.3 10.4 59 3-64 3-61 (624)
129 PRK00149 dnaA chromosomal repl 97.0 0.0025 5.4E-08 62.4 8.7 75 41-133 148-222 (450)
130 TIGR02880 cbbX_cfxQ probable R 97.0 0.0067 1.4E-07 55.6 10.9 47 18-64 22-81 (284)
131 PRK14953 DNA polymerase III su 97.0 0.0082 1.8E-07 59.1 12.1 46 18-64 16-61 (486)
132 COG0470 HolB ATPase involved i 97.0 0.0073 1.6E-07 56.1 11.3 119 19-157 2-147 (325)
133 PRK08451 DNA polymerase III su 97.0 0.0091 2E-07 59.1 12.3 134 18-159 14-157 (535)
134 PRK05541 adenylylsulfate kinas 97.0 0.001 2.2E-08 56.3 5.0 36 40-77 6-41 (176)
135 COG0572 Udk Uridine kinase [Nu 97.0 0.0014 3.1E-08 56.8 5.7 81 39-124 6-86 (218)
136 TIGR02639 ClpA ATP-dependent C 97.0 0.0058 1.3E-07 63.5 11.3 116 17-145 453-578 (731)
137 PRK14971 DNA polymerase III su 97.0 0.0083 1.8E-07 60.8 11.9 46 18-64 17-62 (614)
138 PRK05563 DNA polymerase III su 97.0 0.011 2.3E-07 59.4 12.6 57 5-64 5-61 (559)
139 PRK09270 nucleoside triphospha 97.0 0.0038 8.3E-08 55.2 8.5 42 23-64 8-56 (229)
140 CHL00176 ftsH cell division pr 97.0 0.0035 7.5E-08 63.6 9.1 94 18-133 183-286 (638)
141 PRK14087 dnaA chromosomal repl 97.0 0.0028 6E-08 61.9 8.1 100 42-157 142-246 (450)
142 PRK10865 protein disaggregatio 97.0 0.0051 1.1E-07 64.8 10.5 118 18-145 568-695 (857)
143 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0059 1.3E-07 54.1 9.5 62 32-94 10-77 (235)
144 PHA00729 NTP-binding motif con 96.9 0.0027 5.9E-08 55.6 6.9 24 41-64 17-40 (226)
145 COG1484 DnaC DNA replication p 96.9 0.0022 4.8E-08 57.6 6.5 76 40-134 104-179 (254)
146 PF13671 AAA_33: AAA domain; P 96.9 0.0047 1E-07 50.0 7.9 22 43-64 1-22 (143)
147 TIGR00064 ftsY signal recognit 96.9 0.0052 1.1E-07 55.9 8.9 40 39-80 70-109 (272)
148 CHL00095 clpC Clp protease ATP 96.9 0.0071 1.5E-07 63.6 11.0 118 18-146 509-637 (821)
149 PRK14965 DNA polymerase III su 96.9 0.01 2.2E-07 59.9 11.5 54 8-64 8-61 (576)
150 PRK09112 DNA polymerase III su 96.9 0.0073 1.6E-07 57.0 9.9 142 13-159 18-181 (351)
151 PRK06305 DNA polymerase III su 96.9 0.0093 2E-07 58.2 10.9 47 17-64 16-62 (451)
152 PTZ00301 uridine kinase; Provi 96.9 0.0016 3.5E-08 56.8 5.0 25 40-64 2-26 (210)
153 cd03115 SRP The signal recogni 96.9 0.0074 1.6E-07 50.8 8.9 22 43-64 2-23 (173)
154 PRK14088 dnaA chromosomal repl 96.9 0.0041 8.9E-08 60.6 8.2 73 42-133 131-205 (440)
155 PF07693 KAP_NTPase: KAP famil 96.8 0.015 3.3E-07 54.1 11.8 46 23-70 1-47 (325)
156 PRK07133 DNA polymerase III su 96.8 0.0098 2.1E-07 60.7 11.1 46 18-64 18-63 (725)
157 PRK07471 DNA polymerase III su 96.8 0.016 3.5E-07 55.0 11.9 48 15-63 16-63 (365)
158 TIGR03499 FlhF flagellar biosy 96.8 0.0051 1.1E-07 56.3 8.3 85 40-130 193-280 (282)
159 PRK14722 flhF flagellar biosyn 96.8 0.004 8.6E-08 58.9 7.6 87 40-132 136-225 (374)
160 TIGR00362 DnaA chromosomal rep 96.8 0.0048 1E-07 59.5 8.4 72 42-133 137-210 (405)
161 PRK06647 DNA polymerase III su 96.8 0.014 2.9E-07 58.6 11.7 131 18-157 16-157 (563)
162 COG1373 Predicted ATPase (AAA+ 96.8 0.0086 1.9E-07 57.5 9.9 91 43-161 39-133 (398)
163 cd01394 radB RadB. The archaea 96.8 0.0052 1.1E-07 53.8 7.7 50 29-80 7-56 (218)
164 PRK06526 transposase; Provisio 96.8 0.0024 5.1E-08 57.5 5.6 23 42-64 99-121 (254)
165 COG0542 clpA ATP-binding subun 96.8 0.0074 1.6E-07 61.7 9.6 134 18-162 491-646 (786)
166 PTZ00454 26S protease regulato 96.8 0.0058 1.2E-07 58.6 8.3 52 13-64 140-202 (398)
167 PRK08181 transposase; Validate 96.8 0.0035 7.5E-08 56.8 6.4 73 42-134 107-179 (269)
168 PRK00771 signal recognition pa 96.7 0.0088 1.9E-07 57.9 9.5 88 40-131 94-184 (437)
169 COG3899 Predicted ATPase [Gene 96.7 0.0059 1.3E-07 64.2 9.0 75 19-95 1-84 (849)
170 PRK09087 hypothetical protein; 96.7 0.0072 1.6E-07 53.4 8.3 24 41-64 44-67 (226)
171 PRK15455 PrkA family serine pr 96.7 0.0016 3.5E-08 64.2 4.4 46 19-64 77-126 (644)
172 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0043 9.2E-08 61.0 7.2 95 18-134 190-294 (802)
173 PRK08084 DNA replication initi 96.7 0.0031 6.7E-08 56.1 5.8 59 17-79 22-81 (235)
174 PRK11034 clpA ATP-dependent Cl 96.7 0.0037 8.1E-08 64.6 7.1 45 18-64 186-230 (758)
175 PRK14948 DNA polymerase III su 96.7 0.019 4E-07 58.3 11.9 138 18-159 16-161 (620)
176 KOG0989 Replication factor C, 96.7 0.007 1.5E-07 54.8 7.8 125 17-157 35-167 (346)
177 PRK08233 hypothetical protein; 96.7 0.0014 3E-08 55.5 3.3 24 41-64 3-26 (182)
178 PRK11889 flhF flagellar biosyn 96.7 0.0094 2E-07 56.5 9.0 25 40-64 240-264 (436)
179 PRK09183 transposase/IS protei 96.7 0.0046 1E-07 55.8 6.8 23 42-64 103-125 (259)
180 COG2884 FtsE Predicted ATPase 96.7 0.0077 1.7E-07 51.0 7.4 58 104-161 137-199 (223)
181 PRK06620 hypothetical protein; 96.7 0.0065 1.4E-07 53.2 7.4 23 42-64 45-67 (214)
182 PRK14974 cell division protein 96.7 0.013 2.9E-07 54.7 9.8 92 40-133 139-233 (336)
183 PRK06835 DNA replication prote 96.7 0.0065 1.4E-07 56.7 7.7 44 42-91 184-227 (329)
184 PLN00020 ribulose bisphosphate 96.7 0.0041 9E-08 58.2 6.2 27 39-65 146-172 (413)
185 TIGR00235 udk uridine kinase. 96.6 0.0017 3.8E-08 56.5 3.6 26 39-64 4-29 (207)
186 PF13177 DNA_pol3_delta2: DNA 96.6 0.023 5E-07 47.4 10.1 131 22-160 1-143 (162)
187 PRK08939 primosomal protein Dn 96.6 0.0076 1.7E-07 55.7 7.7 97 22-138 135-235 (306)
188 TIGR01241 FtsH_fam ATP-depende 96.6 0.0052 1.1E-07 60.9 7.0 95 17-133 54-158 (495)
189 PF01695 IstB_IS21: IstB-like 96.6 0.0032 6.9E-08 53.5 4.8 74 41-134 47-120 (178)
190 KOG0734 AAA+-type ATPase conta 96.6 0.0099 2.1E-07 57.7 8.5 50 18-67 304-363 (752)
191 PRK05480 uridine/cytidine kina 96.6 0.0019 4.2E-08 56.2 3.5 25 40-64 5-29 (209)
192 COG1222 RPT1 ATP-dependent 26S 96.6 0.03 6.4E-07 52.0 11.0 125 18-165 151-309 (406)
193 KOG1259 Nischarin, modulator o 96.6 0.00083 1.8E-08 60.5 1.0 85 239-329 304-388 (490)
194 PRK12723 flagellar biosynthesi 96.6 0.012 2.6E-07 56.1 9.0 87 40-132 173-264 (388)
195 PF13238 AAA_18: AAA domain; P 96.6 0.0016 3.4E-08 51.6 2.5 21 44-64 1-21 (129)
196 cd03214 ABC_Iron-Siderophores_ 96.6 0.019 4E-07 48.8 9.3 117 41-160 25-159 (180)
197 cd02025 PanK Pantothenate kina 96.6 0.0079 1.7E-07 52.9 7.2 22 43-64 1-22 (220)
198 TIGR01243 CDC48 AAA family ATP 96.5 0.01 2.2E-07 61.8 9.0 48 17-64 177-235 (733)
199 cd00983 recA RecA is a bacter 96.5 0.0078 1.7E-07 55.8 7.3 98 28-132 41-143 (325)
200 PRK15386 type III secretion pr 96.5 0.0024 5.1E-08 60.9 3.9 66 240-313 50-116 (426)
201 PF13604 AAA_30: AAA domain; P 96.5 0.0087 1.9E-07 51.6 7.1 112 25-155 4-126 (196)
202 PRK05642 DNA replication initi 96.5 0.0076 1.6E-07 53.6 6.9 35 42-78 46-80 (234)
203 PRK08903 DnaA regulatory inact 96.5 0.0063 1.4E-07 53.7 6.3 44 20-64 21-65 (227)
204 TIGR00763 lon ATP-dependent pr 96.5 0.006 1.3E-07 63.8 7.1 53 17-71 319-375 (775)
205 TIGR02012 tigrfam_recA protein 96.5 0.009 1.9E-07 55.4 7.5 98 28-132 41-143 (321)
206 PF14516 AAA_35: AAA-like doma 96.5 0.023 4.9E-07 53.3 10.3 117 13-134 6-139 (331)
207 TIGR01425 SRP54_euk signal rec 96.5 0.014 3E-07 56.3 8.7 25 40-64 99-123 (429)
208 PRK12727 flagellar biosynthesi 96.5 0.011 2.4E-07 58.1 8.1 25 40-64 349-373 (559)
209 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.021 4.5E-07 50.8 9.4 61 29-91 9-69 (237)
210 PRK06067 flagellar accessory p 96.4 0.013 2.9E-07 51.9 8.1 101 29-132 13-130 (234)
211 COG1428 Deoxynucleoside kinase 96.4 0.0021 4.5E-08 55.2 2.6 26 41-66 4-29 (216)
212 PRK15453 phosphoribulokinase; 96.4 0.016 3.4E-07 52.5 8.2 80 40-121 4-89 (290)
213 PRK07399 DNA polymerase III su 96.4 0.023 5E-07 52.8 9.6 46 18-64 4-49 (314)
214 PRK10867 signal recognition pa 96.4 0.019 4E-07 55.6 9.2 25 40-64 99-123 (433)
215 COG2607 Predicted ATPase (AAA+ 96.4 0.023 5E-07 49.8 8.8 118 15-159 57-183 (287)
216 COG1618 Predicted nucleotide k 96.4 0.0027 5.9E-08 52.1 2.9 91 41-134 5-112 (179)
217 PRK09354 recA recombinase A; P 96.4 0.012 2.7E-07 55.0 7.6 99 27-132 45-148 (349)
218 PRK14086 dnaA chromosomal repl 96.4 0.014 3E-07 58.6 8.4 73 42-134 315-389 (617)
219 cd01131 PilT Pilus retraction 96.4 0.0074 1.6E-07 52.2 5.8 94 42-143 2-95 (198)
220 KOG1051 Chaperone HSP104 and r 96.4 0.023 5E-07 59.0 10.1 131 18-161 562-712 (898)
221 PRK05703 flhF flagellar biosyn 96.4 0.019 4.2E-07 55.5 9.1 40 41-80 221-260 (424)
222 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0055 1.2E-07 49.2 4.5 43 25-67 6-48 (133)
223 cd01120 RecA-like_NTPases RecA 96.3 0.019 4.1E-07 47.1 8.0 36 43-80 1-36 (165)
224 PRK12726 flagellar biosynthesi 96.3 0.016 3.6E-07 54.6 8.2 87 40-132 205-295 (407)
225 PRK12724 flagellar biosynthesi 96.3 0.021 4.5E-07 54.7 8.9 24 41-64 223-246 (432)
226 PRK11034 clpA ATP-dependent Cl 96.3 0.021 4.6E-07 59.2 9.5 115 18-145 458-582 (758)
227 TIGR00390 hslU ATP-dependent p 96.3 0.0093 2E-07 56.9 6.4 76 17-94 11-104 (441)
228 COG0542 clpA ATP-binding subun 96.3 0.0054 1.2E-07 62.7 5.0 47 16-64 168-214 (786)
229 PRK05201 hslU ATP-dependent pr 96.3 0.0089 1.9E-07 57.1 6.1 76 17-94 14-107 (443)
230 PRK14723 flhF flagellar biosyn 96.3 0.019 4.1E-07 59.0 8.8 56 41-96 185-243 (767)
231 PRK14721 flhF flagellar biosyn 96.3 0.022 4.7E-07 54.8 8.8 25 40-64 190-214 (420)
232 COG0468 RecA RecA/RadA recombi 96.2 0.026 5.7E-07 51.2 8.8 89 39-132 58-151 (279)
233 PF00158 Sigma54_activat: Sigm 96.2 0.014 3E-07 49.0 6.6 69 20-92 1-72 (168)
234 PRK12422 chromosomal replicati 96.2 0.01 2.2E-07 57.8 6.6 73 42-134 142-214 (445)
235 cd00116 LRR_RI Leucine-rich re 96.2 0.0043 9.3E-08 57.3 3.8 88 238-326 132-232 (319)
236 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0038 8.2E-08 53.1 3.1 25 40-64 2-26 (188)
237 PRK06547 hypothetical protein; 96.2 0.004 8.7E-08 52.5 3.2 26 39-64 13-38 (172)
238 TIGR02858 spore_III_AA stage I 96.2 0.11 2.4E-06 47.1 12.7 128 27-161 98-231 (270)
239 PRK06762 hypothetical protein; 96.2 0.0034 7.4E-08 52.4 2.7 23 42-64 3-25 (166)
240 PRK06921 hypothetical protein; 96.2 0.0084 1.8E-07 54.3 5.4 36 41-78 117-153 (266)
241 COG0467 RAD55 RecA-superfamily 96.2 0.012 2.7E-07 53.0 6.4 55 36-92 18-72 (260)
242 PRK15370 E3 ubiquitin-protein 96.2 0.0064 1.4E-07 62.9 5.0 51 269-325 243-293 (754)
243 KOG0735 AAA+-type ATPase [Post 96.2 0.011 2.5E-07 59.1 6.5 95 16-132 406-504 (952)
244 cd02019 NK Nucleoside/nucleoti 96.2 0.0035 7.6E-08 44.2 2.2 22 43-64 1-22 (69)
245 TIGR00959 ffh signal recogniti 96.2 0.033 7.2E-07 53.8 9.5 24 41-64 99-122 (428)
246 PRK08058 DNA polymerase III su 96.2 0.054 1.2E-06 50.7 10.7 127 19-159 6-150 (329)
247 cd02029 PRK_like Phosphoribulo 96.2 0.017 3.6E-07 51.9 6.9 79 43-123 1-85 (277)
248 PRK10787 DNA-binding ATP-depen 96.1 0.019 4.1E-07 59.9 8.3 49 16-64 320-372 (784)
249 COG4608 AppF ABC-type oligopep 96.1 0.022 4.7E-07 51.0 7.5 93 40-134 38-139 (268)
250 COG1875 NYN ribonuclease and A 96.1 0.02 4.3E-07 53.2 7.4 45 15-61 218-265 (436)
251 PRK05439 pantothenate kinase; 96.1 0.03 6.6E-07 51.7 8.7 78 39-123 84-166 (311)
252 cd01121 Sms Sms (bacterial rad 96.1 0.031 6.8E-07 53.1 9.1 99 28-132 69-168 (372)
253 KOG0991 Replication factor C, 96.1 0.016 3.5E-07 50.6 6.4 46 17-64 26-71 (333)
254 PRK03839 putative kinase; Prov 96.1 0.0035 7.5E-08 53.2 2.4 22 43-64 2-23 (180)
255 cd02023 UMPK Uridine monophosp 96.1 0.0034 7.3E-08 54.2 2.2 22 43-64 1-22 (198)
256 KOG3665 ZYG-1-like serine/thre 96.1 0.0012 2.6E-08 67.6 -0.8 87 241-329 121-209 (699)
257 COG0466 Lon ATP-dependent Lon 96.1 0.0062 1.3E-07 61.1 4.1 55 15-71 320-378 (782)
258 cd01122 GP4d_helicase GP4d_hel 96.1 0.077 1.7E-06 48.1 11.2 54 40-95 29-83 (271)
259 KOG0744 AAA+-type ATPase [Post 96.1 0.011 2.4E-07 53.9 5.4 81 41-133 177-261 (423)
260 cd00116 LRR_RI Leucine-rich re 96.1 0.0034 7.3E-08 58.0 2.2 84 242-326 108-204 (319)
261 PRK13531 regulatory ATPase Rav 96.1 0.0069 1.5E-07 58.9 4.4 44 17-64 19-62 (498)
262 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.019 4.1E-07 51.2 6.8 119 41-161 30-201 (254)
263 COG1102 Cmk Cytidylate kinase 96.0 0.0067 1.5E-07 49.8 3.5 44 43-97 2-45 (179)
264 COG2255 RuvB Holliday junction 96.0 0.006 1.3E-07 54.7 3.5 51 16-66 24-77 (332)
265 PRK14738 gmk guanylate kinase; 96.0 0.0056 1.2E-07 53.3 3.3 31 34-64 6-36 (206)
266 TIGR01243 CDC48 AAA family ATP 96.0 0.053 1.1E-06 56.5 11.0 95 16-132 451-556 (733)
267 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.057 1.2E-06 47.6 9.8 57 30-88 9-65 (229)
268 PRK15370 E3 ubiquitin-protein 96.0 0.014 3E-07 60.5 6.6 75 242-326 199-273 (754)
269 KOG1532 GTPase XAB1, interacts 96.0 0.0047 1E-07 55.0 2.7 32 39-72 17-48 (366)
270 TIGR00764 lon_rel lon-related 96.0 0.013 2.8E-07 59.4 6.3 75 16-96 16-92 (608)
271 PRK04296 thymidine kinase; Pro 96.0 0.01 2.2E-07 51.0 4.7 110 42-159 3-116 (190)
272 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.025 5.4E-07 51.1 7.4 40 39-80 34-73 (259)
273 PRK08149 ATP synthase SpaL; Va 96.0 0.026 5.7E-07 54.3 7.9 87 41-133 151-252 (428)
274 PRK08972 fliI flagellum-specif 96.0 0.024 5.2E-07 54.6 7.4 94 41-140 162-271 (444)
275 TIGR02322 phosphon_PhnN phosph 95.9 0.0055 1.2E-07 51.9 2.9 23 42-64 2-24 (179)
276 KOG0532 Leucine-rich repeat (L 95.9 0.00097 2.1E-08 64.8 -2.0 65 259-326 181-245 (722)
277 PRK10416 signal recognition pa 95.9 0.03 6.5E-07 52.1 7.9 25 40-64 113-137 (318)
278 COG0593 DnaA ATPase involved i 95.9 0.021 4.6E-07 54.4 6.9 75 40-133 112-186 (408)
279 cd03223 ABCD_peroxisomal_ALDP 95.9 0.068 1.5E-06 44.7 9.4 112 41-161 27-150 (166)
280 PRK06995 flhF flagellar biosyn 95.9 0.029 6.3E-07 54.9 7.9 56 41-96 256-314 (484)
281 PRK10751 molybdopterin-guanine 95.9 0.008 1.7E-07 50.6 3.5 25 40-64 5-29 (173)
282 cd03247 ABCC_cytochrome_bd The 95.9 0.035 7.6E-07 46.9 7.6 24 41-64 28-51 (178)
283 PF00625 Guanylate_kin: Guanyl 95.9 0.0062 1.3E-07 51.9 2.9 36 41-78 2-37 (183)
284 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.091 2E-06 42.8 9.7 24 41-64 26-49 (144)
285 PLN02318 phosphoribulokinase/u 95.9 0.011 2.4E-07 58.8 4.9 34 31-64 55-88 (656)
286 PRK04040 adenylate kinase; Pro 95.9 0.0063 1.4E-07 52.1 2.9 46 42-96 3-48 (188)
287 TIGR03263 guanyl_kin guanylate 95.9 0.0068 1.5E-07 51.3 3.1 23 42-64 2-24 (180)
288 KOG1969 DNA replication checkp 95.9 0.018 4E-07 57.8 6.4 26 39-64 324-349 (877)
289 PRK08927 fliI flagellum-specif 95.9 0.024 5.2E-07 54.8 7.0 87 41-133 158-259 (442)
290 PRK00279 adk adenylate kinase; 95.9 0.048 1E-06 47.7 8.5 22 43-64 2-23 (215)
291 PLN03186 DNA repair protein RA 95.8 0.054 1.2E-06 50.9 9.1 67 29-96 111-183 (342)
292 PRK06217 hypothetical protein; 95.8 0.0063 1.4E-07 51.8 2.7 24 42-65 2-25 (183)
293 KOG1259 Nischarin, modulator o 95.8 0.0008 1.7E-08 60.6 -2.9 86 236-326 323-410 (490)
294 KOG2004 Mitochondrial ATP-depe 95.8 0.014 3.1E-07 58.5 5.3 56 14-71 407-466 (906)
295 cd02024 NRK1 Nicotinamide ribo 95.8 0.0054 1.2E-07 52.5 2.2 22 43-64 1-22 (187)
296 cd03246 ABCC_Protease_Secretio 95.8 0.034 7.4E-07 46.8 7.1 116 41-160 28-157 (173)
297 cd02028 UMPK_like Uridine mono 95.8 0.0073 1.6E-07 51.3 3.0 22 43-64 1-22 (179)
298 PF03308 ArgK: ArgK protein; 95.8 0.016 3.4E-07 51.6 5.1 39 26-64 14-52 (266)
299 PRK00625 shikimate kinase; Pro 95.8 0.0057 1.2E-07 51.7 2.3 22 43-64 2-23 (173)
300 PRK11823 DNA repair protein Ra 95.8 0.062 1.3E-06 52.5 9.8 100 27-132 66-166 (446)
301 COG1223 Predicted ATPase (AAA+ 95.8 0.029 6.3E-07 49.8 6.6 50 17-66 120-176 (368)
302 PRK00131 aroK shikimate kinase 95.8 0.0063 1.4E-07 51.0 2.5 24 41-64 4-27 (175)
303 PRK12597 F0F1 ATP synthase sub 95.8 0.017 3.8E-07 56.1 5.8 90 42-132 144-247 (461)
304 PRK13765 ATP-dependent proteas 95.8 0.014 3E-07 59.2 5.3 74 17-96 30-105 (637)
305 COG4886 Leucine-rich repeat (L 95.8 0.0044 9.6E-08 59.4 1.7 79 243-325 141-219 (394)
306 PRK04301 radA DNA repair and r 95.8 0.052 1.1E-06 50.6 8.8 56 39-95 100-161 (317)
307 TIGR02238 recomb_DMC1 meiotic 95.8 0.074 1.6E-06 49.4 9.7 67 29-96 84-156 (313)
308 PLN03187 meiotic recombination 95.8 0.066 1.4E-06 50.2 9.4 57 39-96 124-186 (344)
309 PRK00889 adenylylsulfate kinas 95.8 0.0095 2.1E-07 50.3 3.5 25 40-64 3-27 (175)
310 PRK15387 E3 ubiquitin-protein 95.7 0.011 2.3E-07 61.3 4.4 55 267-326 402-456 (788)
311 PF02562 PhoH: PhoH-like prote 95.7 0.0099 2.1E-07 51.5 3.5 54 21-78 3-56 (205)
312 cd00071 GMPK Guanosine monopho 95.7 0.008 1.7E-07 48.7 2.8 22 43-64 1-22 (137)
313 PF12775 AAA_7: P-loop contain 95.7 0.0099 2.1E-07 54.1 3.7 35 27-64 22-56 (272)
314 PRK15429 formate hydrogenlyase 95.7 0.057 1.2E-06 55.8 9.6 49 17-65 375-423 (686)
315 TIGR00554 panK_bact pantothena 95.7 0.017 3.7E-07 52.8 5.1 79 39-123 60-142 (290)
316 COG0541 Ffh Signal recognition 95.7 0.075 1.6E-06 50.6 9.3 71 27-99 79-159 (451)
317 PF03205 MobB: Molybdopterin g 95.7 0.0087 1.9E-07 48.7 2.8 35 42-78 1-36 (140)
318 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.017 3.6E-07 53.8 4.9 48 17-64 60-111 (358)
319 PTZ00035 Rad51 protein; Provis 95.6 0.11 2.4E-06 48.7 10.5 68 28-96 105-178 (337)
320 COG1419 FlhF Flagellar GTP-bin 95.6 0.072 1.6E-06 50.5 9.0 59 41-99 203-264 (407)
321 TIGR02239 recomb_RAD51 DNA rep 95.6 0.068 1.5E-06 49.7 8.9 67 28-95 83-155 (316)
322 PF01583 APS_kinase: Adenylyls 95.6 0.013 2.8E-07 48.4 3.6 35 42-78 3-37 (156)
323 PF08423 Rad51: Rad51; InterP 95.6 0.027 5.8E-07 50.8 6.0 102 29-131 26-142 (256)
324 PRK13947 shikimate kinase; Pro 95.6 0.0074 1.6E-07 50.6 2.3 22 43-64 3-24 (171)
325 COG4886 Leucine-rich repeat (L 95.6 0.0035 7.6E-08 60.1 0.2 81 241-325 115-196 (394)
326 cd03216 ABC_Carb_Monos_I This 95.6 0.042 9.2E-07 45.8 6.8 109 41-160 26-143 (163)
327 PF00910 RNA_helicase: RNA hel 95.6 0.0046 1E-07 47.8 0.9 21 44-64 1-21 (107)
328 cd03228 ABCC_MRP_Like The MRP 95.6 0.055 1.2E-06 45.5 7.5 24 41-64 28-51 (171)
329 COG3903 Predicted ATPase [Gene 95.6 0.006 1.3E-07 57.4 1.7 110 40-159 13-127 (414)
330 cd01135 V_A-ATPase_B V/A-type 95.6 0.046 9.9E-07 49.4 7.2 99 42-140 70-185 (276)
331 PF07724 AAA_2: AAA domain (Cd 95.6 0.0074 1.6E-07 50.9 2.0 38 41-80 3-41 (171)
332 cd02021 GntK Gluconate kinase 95.6 0.0084 1.8E-07 49.1 2.3 22 43-64 1-22 (150)
333 PRK10078 ribose 1,5-bisphospho 95.5 0.011 2.4E-07 50.5 3.1 23 42-64 3-25 (186)
334 COG0194 Gmk Guanylate kinase [ 95.5 0.018 3.9E-07 48.6 4.3 25 41-65 4-28 (191)
335 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.0072 1.6E-07 51.3 2.0 22 43-64 1-22 (183)
336 COG0563 Adk Adenylate kinase a 95.5 0.008 1.7E-07 51.0 2.2 97 43-146 2-102 (178)
337 cd02027 APSK Adenosine 5'-phos 95.5 0.042 9.1E-07 45.1 6.5 22 43-64 1-22 (149)
338 PRK00300 gmk guanylate kinase; 95.5 0.011 2.3E-07 51.3 3.0 24 41-64 5-28 (205)
339 PF00006 ATP-synt_ab: ATP synt 95.5 0.033 7.2E-07 48.7 6.0 86 42-133 16-116 (215)
340 PRK13949 shikimate kinase; Pro 95.5 0.0096 2.1E-07 50.1 2.5 22 43-64 3-24 (169)
341 PTZ00361 26 proteosome regulat 95.5 0.017 3.7E-07 56.0 4.5 52 18-71 183-245 (438)
342 cd00227 CPT Chloramphenicol (C 95.5 0.01 2.3E-07 50.1 2.8 23 42-64 3-25 (175)
343 KOG0731 AAA+-type ATPase conta 95.5 0.12 2.7E-06 52.8 10.7 50 18-67 311-370 (774)
344 PF03193 DUF258: Protein of un 95.5 0.023 5.1E-07 47.1 4.7 37 24-65 23-59 (161)
345 PRK03846 adenylylsulfate kinas 95.5 0.014 3E-07 50.4 3.5 26 39-64 22-47 (198)
346 cd02020 CMPK Cytidine monophos 95.5 0.0097 2.1E-07 48.3 2.4 22 43-64 1-22 (147)
347 PF00560 LRR_1: Leucine Rich R 95.5 0.0078 1.7E-07 32.1 1.2 19 269-288 2-20 (22)
348 PRK13975 thymidylate kinase; P 95.5 0.01 2.2E-07 51.0 2.6 23 42-64 3-25 (196)
349 TIGR03498 FliI_clade3 flagella 95.5 0.031 6.6E-07 53.8 6.1 91 41-133 140-241 (418)
350 COG2842 Uncharacterized ATPase 95.5 0.11 2.4E-06 47.1 9.2 121 14-148 68-193 (297)
351 TIGR00416 sms DNA repair prote 95.5 0.087 1.9E-06 51.5 9.4 100 27-132 80-180 (454)
352 PF00560 LRR_1: Leucine Rich R 95.5 0.0082 1.8E-07 32.0 1.3 22 292-314 1-22 (22)
353 KOG0733 Nuclear AAA ATPase (VC 95.4 0.073 1.6E-06 52.7 8.6 122 22-165 515-666 (802)
354 PLN02348 phosphoribulokinase 95.4 0.062 1.3E-06 51.0 7.9 27 38-64 46-72 (395)
355 KOG0727 26S proteasome regulat 95.4 0.035 7.5E-07 49.1 5.6 57 13-71 150-217 (408)
356 PF07728 AAA_5: AAA domain (dy 95.4 0.011 2.4E-07 47.7 2.5 21 44-64 2-22 (139)
357 PRK07594 type III secretion sy 95.4 0.047 1E-06 52.7 7.0 90 40-133 154-256 (433)
358 KOG4194 Membrane glycoprotein 95.3 0.0039 8.6E-08 61.0 -0.4 82 239-324 146-230 (873)
359 PRK06002 fliI flagellum-specif 95.3 0.044 9.6E-07 53.0 6.7 88 41-133 165-265 (450)
360 PRK05707 DNA polymerase III su 95.3 0.21 4.6E-06 46.7 11.1 40 121-160 105-147 (328)
361 TIGR00750 lao LAO/AO transport 95.3 0.022 4.7E-07 52.6 4.5 38 27-64 20-57 (300)
362 cd01136 ATPase_flagellum-secre 95.3 0.057 1.2E-06 50.2 7.2 87 41-133 69-170 (326)
363 TIGR02655 circ_KaiC circadian 95.3 0.087 1.9E-06 52.1 8.9 102 27-131 249-362 (484)
364 PRK09435 membrane ATPase/prote 95.3 0.029 6.3E-07 52.4 5.3 38 27-64 42-79 (332)
365 PRK06936 type III secretion sy 95.3 0.067 1.4E-06 51.7 7.8 87 41-133 162-263 (439)
366 COG1100 GTPase SAR1 and relate 95.3 0.014 2.9E-07 51.0 2.9 24 42-65 6-29 (219)
367 PRK05057 aroK shikimate kinase 95.3 0.013 2.7E-07 49.5 2.6 23 42-64 5-27 (172)
368 KOG2228 Origin recognition com 95.3 0.057 1.2E-06 49.7 6.8 116 16-133 22-148 (408)
369 PRK13948 shikimate kinase; Pro 95.2 0.013 2.8E-07 49.9 2.5 25 40-64 9-33 (182)
370 TIGR01041 ATP_syn_B_arch ATP s 95.2 0.07 1.5E-06 52.0 7.8 99 42-140 142-257 (458)
371 PRK12678 transcription termina 95.2 0.035 7.5E-07 55.0 5.6 90 42-133 417-514 (672)
372 PRK14737 gmk guanylate kinase; 95.2 0.018 3.9E-07 49.2 3.4 24 41-64 4-27 (186)
373 PF08433 KTI12: Chromatin asso 95.2 0.021 4.6E-07 51.8 3.9 23 42-64 2-24 (270)
374 COG1124 DppF ABC-type dipeptid 95.2 0.027 5.7E-07 49.6 4.3 24 40-63 32-55 (252)
375 cd00464 SK Shikimate kinase (S 95.2 0.015 3.3E-07 47.6 2.8 21 44-64 2-22 (154)
376 cd00820 PEPCK_HprK Phosphoenol 95.2 0.019 4.1E-07 44.2 3.0 22 41-62 15-36 (107)
377 TIGR03305 alt_F1F0_F1_bet alte 95.2 0.035 7.5E-07 53.8 5.5 91 42-133 139-243 (449)
378 PRK09280 F0F1 ATP synthase sub 95.2 0.071 1.5E-06 51.8 7.7 89 42-132 145-248 (463)
379 KOG0729 26S proteasome regulat 95.2 0.19 4E-06 45.0 9.5 45 20-64 179-234 (435)
380 PF08477 Miro: Miro-like prote 95.2 0.016 3.4E-07 45.2 2.7 23 44-66 2-24 (119)
381 cd01124 KaiC KaiC is a circadi 95.1 0.031 6.7E-07 47.4 4.7 44 44-89 2-45 (187)
382 TIGR03497 FliI_clade2 flagella 95.1 0.046 1E-06 52.6 6.2 25 40-64 136-160 (413)
383 PF00154 RecA: recA bacterial 95.1 0.043 9.2E-07 50.9 5.7 99 29-132 40-141 (322)
384 TIGR01313 therm_gnt_kin carboh 95.1 0.013 2.8E-07 48.8 2.1 21 44-64 1-21 (163)
385 TIGR00073 hypB hydrogenase acc 95.1 0.018 3.9E-07 50.1 3.1 26 39-64 20-45 (207)
386 PRK10463 hydrogenase nickel in 95.1 0.046 1E-06 49.8 5.8 31 39-71 102-132 (290)
387 PRK05342 clpX ATP-dependent pr 95.1 0.016 3.6E-07 55.7 2.9 48 17-64 70-131 (412)
388 PF03029 ATP_bind_1: Conserved 95.1 0.016 3.4E-07 51.6 2.6 32 46-79 1-32 (238)
389 TIGR02788 VirB11 P-type DNA tr 95.1 0.048 1E-06 50.6 5.9 94 41-143 144-239 (308)
390 PRK12339 2-phosphoglycerate ki 95.0 0.02 4.3E-07 49.4 3.2 24 41-64 3-26 (197)
391 cd01672 TMPK Thymidine monopho 95.0 0.016 3.4E-07 49.6 2.5 22 43-64 2-23 (200)
392 TIGR03496 FliI_clade1 flagella 95.0 0.049 1.1E-06 52.4 6.0 24 41-64 137-160 (411)
393 PF06564 YhjQ: YhjQ protein; 95.0 0.018 4E-07 51.1 2.9 23 42-64 2-25 (243)
394 KOG0730 AAA+-type ATPase [Post 95.0 0.12 2.5E-06 51.7 8.6 57 13-71 429-496 (693)
395 TIGR00991 3a0901s02IAP34 GTP-b 95.0 0.045 9.7E-07 50.4 5.5 40 26-65 20-62 (313)
396 TIGR00176 mobB molybdopterin-g 95.0 0.017 3.7E-07 47.9 2.5 22 43-64 1-22 (155)
397 PRK14530 adenylate kinase; Pro 95.0 0.018 4E-07 50.3 2.9 23 42-64 4-26 (215)
398 PRK13946 shikimate kinase; Pro 95.0 0.016 3.4E-07 49.5 2.4 23 42-64 11-33 (184)
399 PRK05688 fliI flagellum-specif 95.0 0.14 3E-06 49.7 9.0 88 41-134 168-270 (451)
400 PF00005 ABC_tran: ABC transpo 95.0 0.022 4.7E-07 45.7 3.1 23 42-64 12-34 (137)
401 COG1936 Predicted nucleotide k 95.0 0.018 3.9E-07 47.9 2.5 20 43-62 2-21 (180)
402 TIGR01351 adk adenylate kinase 95.0 0.11 2.4E-06 45.2 7.7 21 44-64 2-22 (210)
403 COG0488 Uup ATPase components 95.0 0.26 5.6E-06 49.1 11.1 119 41-160 348-497 (530)
404 KOG0741 AAA+-type ATPase [Post 95.0 0.07 1.5E-06 52.0 6.8 101 40-161 537-651 (744)
405 PRK13768 GTPase; Provisional 94.9 0.024 5.2E-07 51.0 3.5 23 42-64 3-25 (253)
406 COG0703 AroK Shikimate kinase 94.9 0.018 3.8E-07 48.2 2.4 22 43-64 4-25 (172)
407 PRK04182 cytidylate kinase; Pr 94.9 0.018 3.9E-07 48.5 2.6 22 43-64 2-23 (180)
408 PRK08472 fliI flagellum-specif 94.9 0.044 9.5E-07 52.9 5.4 24 41-64 157-180 (434)
409 PF07726 AAA_3: ATPase family 94.9 0.0097 2.1E-07 47.2 0.8 27 44-72 2-28 (131)
410 TIGR01420 pilT_fam pilus retra 94.9 0.062 1.3E-06 50.6 6.4 93 41-141 122-214 (343)
411 PRK07196 fliI flagellum-specif 94.9 0.097 2.1E-06 50.6 7.7 25 40-64 154-178 (434)
412 KOG4579 Leucine-rich repeat (L 94.9 0.0031 6.6E-08 50.6 -2.1 83 238-324 49-132 (177)
413 PRK09519 recA DNA recombinatio 94.9 0.098 2.1E-06 54.1 8.1 99 27-132 45-148 (790)
414 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.089 1.9E-06 43.7 6.5 117 42-160 3-139 (159)
415 cd04139 RalA_RalB RalA/RalB su 94.9 0.022 4.7E-07 46.9 2.9 22 43-64 2-23 (164)
416 cd01129 PulE-GspE PulE/GspE Th 94.9 0.086 1.9E-06 47.7 7.0 107 21-143 62-170 (264)
417 PRK08533 flagellar accessory p 94.9 0.046 9.9E-07 48.4 5.1 50 39-90 22-71 (230)
418 KOG0531 Protein phosphatase 1, 94.9 0.015 3.2E-07 56.3 2.1 82 238-325 91-172 (414)
419 smart00072 GuKc Guanylate kina 94.9 0.027 5.9E-07 47.9 3.5 24 41-64 2-25 (184)
420 PF01926 MMR_HSR1: 50S ribosom 94.8 0.026 5.7E-07 43.9 3.1 21 44-64 2-22 (116)
421 PRK09099 type III secretion sy 94.8 0.07 1.5E-06 51.7 6.5 91 40-134 162-265 (441)
422 PRK14527 adenylate kinase; Pro 94.8 0.021 4.6E-07 48.9 2.7 26 40-65 5-30 (191)
423 PRK09825 idnK D-gluconate kina 94.8 0.024 5.2E-07 48.0 3.0 23 42-64 4-26 (176)
424 COG2019 AdkA Archaeal adenylat 94.8 0.03 6.4E-07 46.4 3.2 50 41-100 4-53 (189)
425 cd04163 Era Era subfamily. Er 94.8 0.032 6.8E-07 45.6 3.6 24 41-64 3-26 (168)
426 COG0464 SpoVK ATPases of the A 94.8 0.071 1.5E-06 52.9 6.6 97 15-133 239-346 (494)
427 PRK11388 DNA-binding transcrip 94.7 0.074 1.6E-06 54.5 6.9 47 18-64 325-371 (638)
428 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.065 1.4E-06 50.7 6.0 74 41-134 62-139 (362)
429 cd01130 VirB11-like_ATPase Typ 94.7 0.047 1E-06 46.6 4.6 110 25-143 12-121 (186)
430 PF10662 PduV-EutP: Ethanolami 94.7 0.026 5.6E-07 45.8 2.8 24 42-65 2-25 (143)
431 cd01862 Rab7 Rab7 subfamily. 94.7 0.027 5.8E-07 46.8 3.0 22 43-64 2-23 (172)
432 TIGR01287 nifH nitrogenase iro 94.7 0.022 4.7E-07 51.8 2.7 23 42-64 1-23 (275)
433 KOG4194 Membrane glycoprotein 94.7 0.018 3.9E-07 56.6 2.2 97 241-340 124-227 (873)
434 KOG0736 Peroxisome assembly fa 94.7 0.18 3.9E-06 51.3 9.1 99 13-134 667-776 (953)
435 PRK00698 tmk thymidylate kinas 94.7 0.025 5.5E-07 48.8 2.9 23 42-64 4-26 (205)
436 TIGR02173 cyt_kin_arch cytidyl 94.7 0.024 5.3E-07 47.3 2.7 22 43-64 2-23 (171)
437 COG1703 ArgK Putative periplas 94.7 0.04 8.7E-07 49.9 4.1 38 27-64 37-74 (323)
438 PRK14493 putative bifunctional 94.7 0.028 6.1E-07 51.1 3.2 28 42-71 2-29 (274)
439 COG3267 ExeA Type II secretory 94.7 0.32 7E-06 43.2 9.6 97 40-142 50-153 (269)
440 PRK07960 fliI flagellum-specif 94.7 0.075 1.6E-06 51.4 6.2 24 41-64 175-198 (455)
441 cd03225 ABC_cobalt_CbiO_domain 94.6 0.028 6E-07 48.9 3.0 24 41-64 27-50 (211)
442 COG0465 HflB ATP-dependent Zn 94.6 0.12 2.7E-06 51.6 7.8 52 16-67 148-209 (596)
443 PLN02796 D-glycerate 3-kinase 94.6 0.071 1.5E-06 49.8 5.8 25 40-64 99-123 (347)
444 TIGR00382 clpX endopeptidase C 94.6 0.031 6.7E-07 53.7 3.5 48 17-64 76-139 (413)
445 PRK09302 circadian clock prote 94.6 0.16 3.4E-06 50.7 8.7 102 27-131 259-372 (509)
446 cd03116 MobB Molybdenum is an 94.6 0.032 6.9E-07 46.4 3.2 23 42-64 2-24 (159)
447 KOG1859 Leucine-rich repeat pr 94.6 0.0037 8E-08 62.7 -2.8 80 239-324 184-263 (1096)
448 PF13086 AAA_11: AAA domain; P 94.6 0.05 1.1E-06 47.5 4.6 22 43-64 19-40 (236)
449 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.027 5.9E-07 41.7 2.5 22 43-64 1-22 (99)
450 PF14532 Sigma54_activ_2: Sigm 94.6 0.019 4.1E-07 46.5 1.7 45 21-65 1-45 (138)
451 CHL00195 ycf46 Ycf46; Provisio 94.6 0.1 2.2E-06 51.4 7.2 47 18-64 228-282 (489)
452 COG1224 TIP49 DNA helicase TIP 94.6 0.14 3E-06 47.6 7.4 57 17-73 38-97 (450)
453 PRK05922 type III secretion sy 94.6 0.13 2.8E-06 49.7 7.6 96 41-140 157-266 (434)
454 cd00879 Sar1 Sar1 subfamily. 94.6 0.056 1.2E-06 45.9 4.7 25 40-64 18-42 (190)
455 cd04119 RJL RJL (RabJ-Like) su 94.6 0.03 6.5E-07 46.2 2.9 22 44-65 3-24 (168)
456 PRK05800 cobU adenosylcobinami 94.5 0.13 2.8E-06 43.3 6.8 82 43-131 3-85 (170)
457 PRK03731 aroL shikimate kinase 94.5 0.026 5.5E-07 47.4 2.5 23 42-64 3-25 (171)
458 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.5 0.03 6.4E-07 49.0 3.0 24 41-64 30-53 (218)
459 PRK08356 hypothetical protein; 94.5 0.037 7.9E-07 47.6 3.5 22 41-62 5-26 (195)
460 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.083 1.8E-06 46.2 5.8 23 41-63 29-51 (213)
461 cd03229 ABC_Class3 This class 94.5 0.031 6.8E-07 47.3 3.1 24 41-64 26-49 (178)
462 TIGR01039 atpD ATP synthase, F 94.5 0.092 2E-06 50.9 6.5 90 42-133 144-248 (461)
463 PRK08099 bifunctional DNA-bind 94.5 0.023 5E-07 54.5 2.5 25 40-64 218-242 (399)
464 PRK13230 nitrogenase reductase 94.5 0.029 6.2E-07 51.2 3.0 23 42-64 2-24 (279)
465 TIGR01026 fliI_yscN ATPase Fli 94.5 0.08 1.7E-06 51.4 6.1 24 41-64 163-186 (440)
466 PRK04328 hypothetical protein; 94.5 0.1 2.3E-06 46.7 6.5 58 29-88 11-68 (249)
467 cd02117 NifH_like This family 94.5 0.028 6.1E-07 49.0 2.8 23 42-64 1-23 (212)
468 PTZ00185 ATPase alpha subunit; 94.5 0.12 2.7E-06 50.6 7.3 90 42-134 190-301 (574)
469 cd03297 ABC_ModC_molybdenum_tr 94.5 0.034 7.3E-07 48.5 3.3 25 39-64 22-46 (214)
470 cd02040 NifH NifH gene encodes 94.5 0.028 6.1E-07 50.8 2.9 23 42-64 2-24 (270)
471 PRK13232 nifH nitrogenase redu 94.5 0.028 6.2E-07 51.0 2.9 23 42-64 2-24 (273)
472 PF03215 Rad17: Rad17 cell cyc 94.5 0.041 8.9E-07 54.6 4.1 56 18-77 19-77 (519)
473 TIGR00960 3a0501s02 Type II (G 94.5 0.031 6.8E-07 48.8 3.0 24 41-64 29-52 (216)
474 smart00173 RAS Ras subfamily o 94.5 0.031 6.8E-07 46.1 2.9 22 43-64 2-23 (164)
475 PRK13236 nitrogenase reductase 94.5 0.036 7.8E-07 51.1 3.5 26 39-64 4-29 (296)
476 cd00046 DEXDc DEAD-like helica 94.5 0.12 2.6E-06 40.6 6.2 52 43-94 2-54 (144)
477 COG1763 MobB Molybdopterin-gua 94.5 0.035 7.6E-07 46.1 3.0 24 41-64 2-25 (161)
478 PLN02200 adenylate kinase fami 94.4 0.034 7.3E-07 49.4 3.2 25 40-64 42-66 (234)
479 KOG0726 26S proteasome regulat 94.4 0.14 3.1E-06 46.2 7.0 52 18-71 185-247 (440)
480 COG0003 ArsA Predicted ATPase 94.4 0.052 1.1E-06 50.4 4.5 47 41-89 2-50 (322)
481 TIGR00231 small_GTP small GTP- 94.4 0.034 7.5E-07 44.8 3.0 23 43-65 3-25 (161)
482 COG3640 CooC CO dehydrogenase 94.4 0.031 6.7E-07 48.9 2.8 22 43-64 2-23 (255)
483 cd03114 ArgK-like The function 94.4 0.039 8.4E-07 45.3 3.3 22 43-64 1-22 (148)
484 TIGR01817 nifA Nif-specific re 94.4 0.11 2.5E-06 52.0 7.2 51 14-64 192-242 (534)
485 COG0237 CoaE Dephospho-CoA kin 94.4 0.034 7.4E-07 48.1 3.0 24 41-64 2-25 (201)
486 PRK05973 replicative DNA helic 94.4 0.12 2.5E-06 46.0 6.5 51 39-91 62-112 (237)
487 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.26 5.5E-06 44.6 8.7 97 42-144 70-184 (274)
488 cd04155 Arl3 Arl3 subfamily. 94.4 0.039 8.4E-07 46.0 3.3 25 40-64 13-37 (173)
489 PF13521 AAA_28: AAA domain; P 94.4 0.032 7E-07 46.4 2.8 21 44-64 2-22 (163)
490 PRK06761 hypothetical protein; 94.4 0.049 1.1E-06 49.6 4.1 24 42-65 4-27 (282)
491 TIGR01166 cbiO cobalt transpor 94.4 0.035 7.5E-07 47.5 3.0 24 41-64 18-41 (190)
492 cd03222 ABC_RNaseL_inhibitor T 94.4 0.036 7.9E-07 46.9 3.1 100 41-160 25-133 (177)
493 TIGR00041 DTMP_kinase thymidyl 94.4 0.033 7.1E-07 47.7 2.9 23 42-64 4-26 (195)
494 PRK06793 fliI flagellum-specif 94.4 0.12 2.6E-06 50.0 6.9 101 41-143 156-268 (432)
495 PRK05537 bifunctional sulfate 94.4 0.068 1.5E-06 53.8 5.5 48 17-64 368-415 (568)
496 TIGR02782 TrbB_P P-type conjug 94.4 0.047 1E-06 50.4 4.0 90 42-142 133-224 (299)
497 PRK13695 putative NTPase; Prov 94.4 0.035 7.7E-07 46.7 3.0 22 43-64 2-23 (174)
498 KOG3347 Predicted nucleotide k 94.4 0.057 1.2E-06 43.9 3.9 23 42-64 8-30 (176)
499 PF06309 Torsin: Torsin; Inte 94.4 0.066 1.4E-06 42.4 4.2 47 18-64 25-76 (127)
500 PF02374 ArsA_ATPase: Anion-tr 94.3 0.031 6.7E-07 51.7 2.8 23 42-64 2-24 (305)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-45 Score=374.53 Aligned_cols=301 Identities=24% Similarity=0.371 Sum_probs=245.4
Q ss_pred ccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcc-cccCCCeeEEEEEe--CCHHHHHHHHHHHhCCC
Q 048347 21 LDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSY-VKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~ 97 (351)
||.|+.++++.+.|..++. .++||+||||+||||||++++|+.. ++.+|+.++||+|| |+..+++++|+..++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 9999999999999998864 8999999999999999999999987 99999999999999 99999999999999885
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccchhh------------
Q 048347 98 SALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIVGLS------------ 164 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v~lL------------ 164 (351)
.... .....++++..+.+.|++|||++||||||+..+|+.+..++|....||+|++ ||++.|+..
T Consensus 239 ~~~~--~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 239 DEEW--EDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred Cccc--chhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 4411 2223478899999999999999999999999999999999999888999999 999999111
Q ss_pred --------------------------------------------------c-------cc---------cCCCC-----c
Q 048347 165 --------------------------------------------------S-------CR---------LENDE-----K 173 (351)
Q Consensus 165 --------------------------------------------------~-------w~---------l~~~~-----~ 173 (351)
+ |+ +..+- .
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 1 32 11111 0
Q ss_pred --------------------eEEccCCCCeEEeccchHHHHHHcCCCC-----CCHHHHHHHHHHHHHHCCCceeeccc-
Q 048347 174 --------------------IRLDLVPPKGKLRARQLYQLWIAEAFIP-----DNCESTAEEYLKELIDRGFIQVNKKD- 227 (351)
Q Consensus 174 --------------------iy~~~fp~~~~~~~~~l~~~w~~eg~i~-----~~~~~~~~~~~~~L~~~~~l~~~~~~- 227 (351)
.|||+||+||.|++++++.+|+||||++ ..+++.|.+|+++|+.+++++.....
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~ 476 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEG 476 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccc
Confidence 1999999999999999999999999997 67789999999999999999987631
Q ss_pred ---------------c---------------c------------------------cCCCCCCCCCCCCCceEEEEeccc
Q 048347 228 ---------------L---------------E------------------------LEDDPMPAPEKLPHLKVLKLKRSS 253 (351)
Q Consensus 228 ---------------l---------------~------------------------l~~~~~~~l~~l~~L~~L~l~~~~ 253 (351)
+ . ..-..++.-...+.|++|-+..+.
T Consensus 477 ~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 477 RKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNS 556 (889)
T ss_pred ceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecc
Confidence 0 0 000011222345567777774333
Q ss_pred ccCceeee-CCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 254 YSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 254 ~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
.....++. .+..++.|++|||++|..+.++|.+||.|-+||+|++++ +.+..+|.++++|++|.+|++..+.
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheecccccc
Confidence 21323333 266788999999999888889999999999999999997 7889999999999999999988765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=3.8e-29 Score=267.33 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=111.9
Q ss_pred ccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--------CC-
Q 048347 12 GLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--------LS- 82 (351)
Q Consensus 12 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--------~~- 82 (351)
.++.+.+++|||+++++++.++|..+.+++++|+||||||+||||||+++|++ +..+|+..+|+... +.
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhccc
Confidence 34556678999999999999999777778999999999999999999999998 88999998887531 10
Q ss_pred --------HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEE
Q 048347 83 --------LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRIL 154 (351)
Q Consensus 83 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Ii 154 (351)
...++.+++.++...... .... ...+++.+++||+|+||||||+.++|+.+.....+.++||+||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~---~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDI---KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCc---ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 123455566665443321 1111 2457788999999999999999999999998777788899999
Q ss_pred E-Eeeccc
Q 048347 155 T-ALIHIV 161 (351)
Q Consensus 155 v-TR~~~v 161 (351)
| ||++++
T Consensus 329 iTTrd~~v 336 (1153)
T PLN03210 329 VITKDKHF 336 (1153)
T ss_pred EEeCcHHH
Confidence 9 999877
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=1.8e-27 Score=218.42 Aligned_cols=138 Identities=30% Similarity=0.485 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCC
Q 048347 23 LEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSAL 100 (351)
Q Consensus 23 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~ 100 (351)
||.++++|.+.|....++.++|+|+||||+||||||.+++++..++.+|+.++|+.++ .+..++++.|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999866789999999999999999999999998899999999999999 77899999999999987431
Q ss_pred ccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccc
Q 048347 101 SEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIV 161 (351)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v 161 (351)
. ....+..+....+++.|+++++|+||||||+...|+.+...++....|++||+ ||+..+
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v 141 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSV 141 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGG
T ss_pred c-ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccc
Confidence 1 14567888999999999999999999999999999999888888778999999 999987
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.96 E-value=1.1e-08 Score=98.25 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=85.2
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMM 86 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~ 86 (351)
+...++.++||++++++|...+... +.....+.|+|+.|+|||++++.++++ .........|+++. .+...+
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHH
Confidence 4556788999999999999998543 223345679999999999999999998 44433334455555 667789
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCh
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRG 134 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~ 134 (351)
+..|+.++...... ....+..++.+.+.+.+. ++..+||||+++..
T Consensus 103 ~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 103 FSEIARQLFGHPPP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 99999998763211 123356667777777775 45689999999764
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.84 E-value=2.9e-08 Score=94.29 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=81.6
Q ss_pred ccCCCCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCC------eeEEEEEe--C
Q 048347 12 GLSWDNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD------CCAWVYYQ--L 81 (351)
Q Consensus 12 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~~~--~ 81 (351)
.+....+.++||++++++|...+... +.....+.|+|++|+|||++++.+++. .....+ ..+|++.. .
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCC
Confidence 35556678999999999999998641 233456789999999999999999987 322211 12344433 5
Q ss_pred CHHHHHHHHHHHhCC---CCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCh
Q 048347 82 SLDMMLDAIMKSLMP---LSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRG 134 (351)
Q Consensus 82 ~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~ 134 (351)
+..+++..|+.++.. +.. ....+..+..+.+.+.+. ++++++|||+++..
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 677899999999942 211 122344555666666663 56789999999766
No 6
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.76 E-value=2.5e-08 Score=85.03 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=42.0
Q ss_pred ccccchhhHHHHHHHHHc-cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CC------HHHHHH
Q 048347 19 VDLDLEDKMEELLDLLIE-RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LS------LDMMLD 88 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~------~~~~~~ 88 (351)
.+|||+++++++...+.. .+...+.+.|+|.+|+|||+|.++++.. +.... .. |+... .. ...+++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR--LAERG-GY-VISINCDDSERNPYSPFRSALR 76 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH--HHHHT----EEEEEEETTTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH--HHhcC-CE-EEEEEEeccccchhhHHHHHHH
Confidence 479999999999999942 2345688999999999999999999998 44442 22 44444 31 255555
Q ss_pred HHHHHhCC
Q 048347 89 AIMKSLMP 96 (351)
Q Consensus 89 ~i~~~~~~ 96 (351)
+++.++..
T Consensus 77 ~l~~~~~~ 84 (185)
T PF13191_consen 77 QLIDQLLD 84 (185)
T ss_dssp HHS-----
T ss_pred HHHHHhhc
Confidence 55555443
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.75 E-value=3.5e-08 Score=79.26 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=74.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccC-----CCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-----FDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALSEILDNDFEMKK 112 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 112 (351)
+.+.+.|+|.+|+|||++++++... .... -..++|+... .+...+...|+.++..... ...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHH
Confidence 3568889999999999999999887 3321 2345688777 7799999999999998876 345777788
Q ss_pred HHHHHhcCCce-EEEEEeCCCCh---hhHHHHHhhcCCCCCCcEEEE
Q 048347 113 NTLHNYLKNKR-YLIVIQDVWRG---DIWDFLKEALPDHQNGSRILT 155 (351)
Q Consensus 113 ~~l~~~L~~k~-~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~Iiv 155 (351)
+.+.+.+...+ .++|+|++... +.++.++.... ..+.++|+
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl 121 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVL 121 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEE
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEE
Confidence 88888886554 59999999654 23444444333 44666666
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.63 E-value=9.1e-07 Score=80.28 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH---
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH--- 116 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~--- 116 (351)
..++.|+|+.|+||||+++.+++.... ..+ ..+|+... .+..++++.|+..++.+.. ..+.......+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLVNTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHHH
Confidence 458889999999999999999988331 111 22344334 7788999999988876533 122233333333
Q ss_pred -Hhc-CCceEEEEEeCCCCh--hhHHHHHh
Q 048347 117 -NYL-KNKRYLIVIQDVWRG--DIWDFLKE 142 (351)
Q Consensus 117 -~~L-~~k~~LlVLDdv~~~--~~~~~l~~ 142 (351)
... .+++.++|+||++.. +.++.++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 322 678899999999876 35565553
No 9
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.60 E-value=8.5e-08 Score=85.69 Aligned_cols=92 Identities=11% Similarity=-0.000 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHHHhCCCCCCcc--CCCCCHHHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSALSE--ILDNDFEMKKNT 114 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~ 114 (351)
-..++|.|++|+|||||++.+|++.... +|+.++|+.+. +++.++++.+...+........ ....-...+.+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999995544 89999999977 7999999999333322211000 000011112222
Q ss_pred HHHh-cCCceEEEEEeCCCC
Q 048347 115 LHNY-LKNKRYLIVIQDVWR 133 (351)
Q Consensus 115 l~~~-L~~k~~LlVLDdv~~ 133 (351)
.... -.+++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 247999999999953
No 10
>PF05729 NACHT: NACHT domain
Probab=98.54 E-value=4.2e-07 Score=75.80 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=64.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccC----CCeeEEEEEe-CCH----HHHHHHHHHHhCCCCCCccCCCCCHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNY----FDCCAWVYYQ-LSL----DMMLDAIMKSLMPLSALSEILDNDFEMKK 112 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~-~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 112 (351)
+++.|.|.+|+||||++++++.+..-... +...+|+... ... ..+...|..+...... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHHHH
Confidence 47889999999999999999887333332 3445566655 221 1344444444333222 111111
Q ss_pred HHHHHhcCCceEEEEEeCCCChhh---------HHH-HHhhcCC-CCCCcEEEE-Eeeccc
Q 048347 113 NTLHNYLKNKRYLIVIQDVWRGDI---------WDF-LKEALPD-HQNGSRILT-ALIHIV 161 (351)
Q Consensus 113 ~~l~~~L~~k~~LlVLDdv~~~~~---------~~~-l~~~l~~-~~~gs~Iiv-TR~~~v 161 (351)
.. -.-+.+++++|+|++++... +.. +...++. ...+.++++ +|....
T Consensus 74 ~~--~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 74 QE--LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HH--HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 11 11257899999999976532 222 2333343 356889999 887755
No 11
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.51 E-value=1.6e-06 Score=70.20 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=41.1
Q ss_pred ccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 21 LDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
+|+++.++.+...+.... .+.+.|+|..|+|||++|+++++. ....-..++++...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~ 56 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNAS 56 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehh
Confidence 478888899988886542 457779999999999999999998 43222334555444
No 12
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=2.3e-06 Score=80.99 Aligned_cols=106 Identities=10% Similarity=0.048 Sum_probs=75.5
Q ss_pred cccCCCCCccccchhhHHHHHHHHHccC-CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHH
Q 048347 11 RGLSWDNKVDLDLEDKMEELLDLLIERQ-PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDA 89 (351)
Q Consensus 11 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 89 (351)
.+.+.+...++||+++...+...|...+ ...+++.|.|++|+|||||++.+..... +. ..+++. .+..++++.
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNp-rg~eElLr~ 328 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDV-RGTEDTLRS 328 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECC-CCHHHHHHH
Confidence 4577788999999999999999986532 2346889999999999999999997732 11 122221 688999999
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhc-----C-CceEEEEE
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYL-----K-NKRYLIVI 128 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVL 128 (351)
|+.+++.+.. ....++.+.+.+.+ . +++.++|+
T Consensus 329 LL~ALGV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 329 VVKALGVPNV------EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHcCCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999997433 23345555555444 2 55666666
No 13
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.47 E-value=2e-07 Score=87.32 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--C--CHHHHHHHHHHHhCCCCCCccCCCCCHHH------H
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--L--SLDMMLDAIMKSLMPLSALSEILDNDFEM------K 111 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~ 111 (351)
...+|+|++|+||||||+++|++...+ +|+.++||.++ + ++.++++.|...+..... +...... .
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~----d~~~~~~~~~a~~~ 244 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF----DEPAERHVQVAEMV 244 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC----CCCHHHHHHHHHHH
Confidence 467899999999999999999994444 89999999998 5 778888888643222221 1111111 1
Q ss_pred HHHHHHh-cCCceEEEEEeCCCCh
Q 048347 112 KNTLHNY-LKNKRYLIVIQDVWRG 134 (351)
Q Consensus 112 ~~~l~~~-L~~k~~LlVLDdv~~~ 134 (351)
.+.-... -.+++.++++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111111 2579999999999543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.43 E-value=3.4e-07 Score=99.14 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=49.5
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCE
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRK 319 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 319 (351)
.+++|+.|+| .++...+.+|. ++.+++|++|+|++|..+..+|.++++|.+|+.|++++|..++.+|.++ ++++|+.
T Consensus 632 ~l~~Lk~L~L-s~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDL-RGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred cCCCCCEEEC-CCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 3455555555 23333344443 4555666666666665566666666666666666666666666666654 5666666
Q ss_pred EEecCCC
Q 048347 320 LESWWPR 326 (351)
Q Consensus 320 L~l~~~~ 326 (351)
|++++|.
T Consensus 709 L~Lsgc~ 715 (1153)
T PLN03210 709 LNLSGCS 715 (1153)
T ss_pred EeCCCCC
Confidence 6666653
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.43 E-value=1.6e-08 Score=83.26 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=53.2
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccc--cccccccccCCccEEeecCCccccccChhh
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLE--EWKMETGAMQKLKSLIVNPCAYLRKFPEEL 311 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i 311 (351)
..+++++++.|+.|++ +...+..+|..+++|+-|++|+|.+| ++. .+|..+..|.-|+.|.|+. ...+.+|.++
T Consensus 71 lp~~issl~klr~lnv--gmnrl~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dv 146 (264)
T KOG0617|consen 71 LPTSISSLPKLRILNV--GMNRLNILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDV 146 (264)
T ss_pred cChhhhhchhhhheec--chhhhhcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcC-CCcccCChhh
Confidence 3456677777777777 34444456777777777777777776 332 4555555555555555555 3455566666
Q ss_pred hcCCCCCEEEecC
Q 048347 312 WRIKALRKLESWW 324 (351)
Q Consensus 312 ~~L~~L~~L~l~~ 324 (351)
++|++|+-|.+++
T Consensus 147 g~lt~lqil~lrd 159 (264)
T KOG0617|consen 147 GKLTNLQILSLRD 159 (264)
T ss_pred hhhcceeEEeecc
Confidence 6666666555554
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.39 E-value=3.1e-07 Score=80.96 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=35.5
Q ss_pred cccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 20 DLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 20 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++||++++++|.+++..+. ...+.|+|+.|+|||+|++++.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 6899999999999987653 467889999999999999999887
No 17
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.38 E-value=5.8e-06 Score=84.10 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=79.9
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCCccc---ccCCCeeEEEEEe----CC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNSSYV---KNYFDCCAWVYYQ----LS 82 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~~wv~~~----~~ 82 (351)
+...++.++|||+++++|...|... .....++-|+|+.|.|||+.++.|....+- +.......++++. .+
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 5556788999999999999988642 223357779999999999999999876221 1122323345554 56
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC---CceEEEEEeCCCCh
Q 048347 83 LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK---NKRYLIVIQDVWRG 134 (351)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVLDdv~~~ 134 (351)
...++..|+.++..... ....+.....+.+.+.+. +...+||||+++..
T Consensus 830 p~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 88899999999955432 122334445555555542 23458999999754
No 18
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.5e-06 Score=78.80 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=86.7
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe--eEEEEEe--CCHHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC--CAWVYYQ--LSLDMM 86 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~--~~~~~~ 86 (351)
+..-++.+.+||++++++...|..- +....-+.|+|..|.|||+.++.|+.. ++..... .+.|+.- .+..++
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHH
Confidence 4445566999999999999988642 212222778999999999999999998 5555333 3555544 899999
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCh
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRG 134 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~ 134 (351)
+..|++++..... ..++..+..+.+.+.+. ++.+++|||++...
T Consensus 90 ~~~i~~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 90 LSKILNKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 9999999974322 35667777788887774 58899999999755
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=2.2e-07 Score=96.76 Aligned_cols=87 Identities=25% Similarity=0.264 Sum_probs=78.1
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
+..+|.|++|+| +.+..+.++|.+++.+.+||||+++++ .+.++|..+++|..|.+|++..+..+..+|..+..|++|
T Consensus 567 f~~m~~LrVLDL-s~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDL-SGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEEC-CCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 667999999999 568888899999999999999999998 799999999999999999999877777777766779999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|.+....
T Consensus 645 r~L~l~~s~ 653 (889)
T KOG4658|consen 645 RVLRLPRSA 653 (889)
T ss_pred cEEEeeccc
Confidence 999997653
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.30 E-value=7.4e-07 Score=95.29 Aligned_cols=86 Identities=20% Similarity=0.130 Sum_probs=40.5
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
++++++|++|+++ ++.....+|..++.+++|++|++++|...+.+|..++++++|++|++++|.....+|..++++++|
T Consensus 184 ~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLA-SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhCcCCCeeecc-CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 3444445555552 222222344444455555555555543333445455555555555555544334455555555555
Q ss_pred CEEEecC
Q 048347 318 RKLESWW 324 (351)
Q Consensus 318 ~~L~l~~ 324 (351)
++|++++
T Consensus 263 ~~L~L~~ 269 (968)
T PLN00113 263 QYLFLYQ 269 (968)
T ss_pred CEEECcC
Confidence 5555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.29 E-value=5.6e-08 Score=80.02 Aligned_cols=95 Identities=22% Similarity=0.202 Sum_probs=83.0
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhc
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
....++.+|.|.+|+|.+++.+-..+|-.+-.+..|+-|.|.+| ..+-+|..+|+|.+|+.|.++. ..+-++|..++.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~ 171 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGD 171 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc-CchhhCcHHHHH
Confidence 34567899999999998888888788987778888999999999 7999999999999999999999 568889999999
Q ss_pred CCCCCEEEecCC-----ChhHH
Q 048347 314 IKALRKLESWWP-----RPELR 330 (351)
Q Consensus 314 L~~L~~L~l~~~-----~~~~~ 330 (351)
|+.|++|.+.|. |||+.
T Consensus 172 lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHhcccceeeecChhhh
Confidence 999999998773 46654
No 22
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=1.4e-06 Score=69.96 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
.+++.|.|+-|+||||++++++.+ .. .-..+++++.. +... ... ...+ ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~-~~~~-~~~----------------~~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFD-DPRD-RRL----------------ADPD-LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccC-CHHH-HHH----------------hhhh-hHHHHHHhhc
Confidence 368889999999999999999987 32 22334555443 1111 000 0000 2344444444
Q ss_pred CceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 121 NKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 121 ~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
.++.+++||++....+|......+.+.....+|++ +.+.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccch
Confidence 57788999999988889888877776555677777 4433
No 23
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.25 E-value=3.7e-06 Score=79.20 Aligned_cols=92 Identities=10% Similarity=-0.017 Sum_probs=61.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHHHhCCCCCCccC-C-CCCHHHHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSALSEI-L-DNDFEMKKNTL 115 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~l 115 (351)
..++|+|++|+|||||++.+++....+ +|+.++||.+. .++.++++.+...+......... . ..-...+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 568899999999999999999984333 69999999988 78999999996544433221000 0 00001111111
Q ss_pred HHh-cCCceEEEEEeCCCCh
Q 048347 116 HNY-LKNKRYLIVIQDVWRG 134 (351)
Q Consensus 116 ~~~-L~~k~~LlVLDdv~~~ 134 (351)
... -.+++.++++|++...
T Consensus 248 e~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHcCCCeEEEEEChhHH
Confidence 122 2589999999999543
No 24
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.24 E-value=1.1e-06 Score=94.06 Aligned_cols=90 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
..++.+++|++|+++ ++.....+|..++++++|++|++++|...+.+|..++++.+|++|++++|.....+|..+++++
T Consensus 158 ~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 158 NDIGSFSSLKVLDLG-GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred hHHhcCCCCCEEECc-cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 446778888888884 3333346777778888888888888855567788888888888888888766667888888888
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|+++++.
T Consensus 237 ~L~~L~L~~n~ 247 (968)
T PLN00113 237 SLNHLDLVYNN 247 (968)
T ss_pred CCCEEECcCce
Confidence 88888887654
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.12 E-value=3.2e-05 Score=82.14 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=83.2
Q ss_pred cCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDA 89 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~ 89 (351)
++-....+|-|..-. ..|.. ....+++.|.|++|.||||++.++... . +.++|+++. -+...+...
T Consensus 9 ~p~~~~~~~~R~rl~----~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~--~----~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 9 RPVRLHNTVVRERLL----AKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG--K----NNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred CCCCccccCcchHHH----HHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh--C----CCeEEEecCcccCCHHHHHHH
Confidence 333455667765444 44432 235789999999999999999998854 2 268899987 466667777
Q ss_pred HHHHhCCCCCC--c-------cCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCChh--h-HHHHHhhcCCCCCCcEEEE
Q 048347 90 IMKSLMPLSAL--S-------EILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRGD--I-WDFLKEALPDHQNGSRILT 155 (351)
Q Consensus 90 i~~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~--~-~~~l~~~l~~~~~gs~Iiv 155 (351)
++..+...... . .....+...+...+...+. +.+++|||||+...+ . .+.+...+.....+..+|+
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777432111 0 0011223333444433443 678999999997652 2 2334444444555667778
Q ss_pred -Eeec
Q 048347 156 -ALIH 159 (351)
Q Consensus 156 -TR~~ 159 (351)
||..
T Consensus 158 ~sR~~ 162 (903)
T PRK04841 158 LSRNL 162 (903)
T ss_pred EeCCC
Confidence 9874
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=5e-06 Score=57.40 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=41.2
Q ss_pred CcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccCh-hhhcCCCCCEEEecCCC
Q 048347 267 PRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPE-ELWRIKALRKLESWWPR 326 (351)
Q Consensus 267 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l~~~~ 326 (351)
++|++|++++| .+..+|.. +..+++|++|++++ ..+..+|+ .+.++++|++|++++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46777888877 67777754 67778888888886 45666665 44777888888877653
No 27
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.08 E-value=1.1e-05 Score=78.06 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=63.0
Q ss_pred CccccchhhHHH---HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHH
Q 048347 18 KVDLDLEDKMEE---LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIM 91 (351)
Q Consensus 18 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~ 91 (351)
+++||.+..+.. +.+++..+ ...-+.++|++|+||||+|+.+++. .... |+.++ ....+ .+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~-ir~i- 80 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKD-LREV- 80 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHH-HHHH-
Confidence 458888877665 77777554 3456778999999999999999887 4333 33333 11111 1111
Q ss_pred HHhCCCCCCccCCCCCHHHHHHHHHHh-cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE
Q 048347 92 KSLMPLSALSEILDNDFEMKKNTLHNY-LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT 155 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 155 (351)
.+..... ..+++.++++|+++.. .+.+.+...+. .|..+++
T Consensus 81 --------------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI 124 (413)
T PRK13342 81 --------------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLI 124 (413)
T ss_pred --------------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEE
Confidence 1111111 1357889999999865 34555555443 2555555
No 28
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.04 E-value=1.9e-05 Score=72.48 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=59.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHN 117 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (351)
++.-+.+||++|+||||||+.+.+. .+.+- ..||+.+ -.-..-.++|.++.... .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~t--sk~~S--yrfvelSAt~a~t~dvR~ife~aq~~-------------------~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIAST--SKKHS--YRFVELSATNAKTNDVRDIFEQAQNE-------------------K 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhh--cCCCc--eEEEEEeccccchHHHHHHHHHHHHH-------------------H
Confidence 5777889999999999999999998 33432 6788887 22222233443332221 2
Q ss_pred hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE
Q 048347 118 YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT 155 (351)
Q Consensus 118 ~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 155 (351)
.+.++|..+++|.|... .+.+ ..+|.-.+|+.++|
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lI 254 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLI 254 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEE
Confidence 24578889999999543 2222 24677788998888
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=6e-06 Score=83.81 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=58.1
Q ss_pred ceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEec
Q 048347 244 LKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESW 323 (351)
Q Consensus 244 L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~ 323 (351)
+..|+|+ ++.....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|+.+++|++|+.|+++
T Consensus 420 v~~L~L~-~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLD-NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECC-CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6667773 333333667777778888888888874445777778888888888888766666778888888888888877
Q ss_pred CC
Q 048347 324 WP 325 (351)
Q Consensus 324 ~~ 325 (351)
+.
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 64
No 30
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=7.7e-05 Score=69.37 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=76.9
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC----cccccCCCeeEEEEEe---CCHHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS----SYVKNYFDCCAWVYYQ---LSLDMMLDAI 90 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~~---~~~~~~~~~i 90 (351)
++++|-+.-++.+.+.+..+. -.+..-++|+.|+||||+|+.++.. .....|.|...|.... ..+++ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 467898888999999886553 3456678999999999999888763 1123455554453311 22222 2222
Q ss_pred HHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCC--ChhhHHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 91 MKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVW--RGDIWDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
...+... -..+++-++|+|+++ +.++++.+...+.+...++.+|+ |.+.+
T Consensus 82 ~~~~~~~--------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 82 IEEVNKK--------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHhcC--------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 2222111 112445566666664 44789999999998888898888 86543
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=6.5e-06 Score=83.55 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=75.7
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhc
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
..+.++.+++|+.|+|+.+.. ...+|..++.+++|++|+|++|...+.+|..++.|++|++|+|++|...+.+|..++.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l-~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSI-RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcc-cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 334567899999999954443 3478888999999999999999655689999999999999999998888899999886
Q ss_pred C-CCCCEEEecCCC
Q 048347 314 I-KALRKLESWWPR 326 (351)
Q Consensus 314 L-~~L~~L~l~~~~ 326 (351)
+ .++..+++.+.+
T Consensus 513 ~~~~~~~l~~~~N~ 526 (623)
T PLN03150 513 RLLHRASFNFTDNA 526 (623)
T ss_pred ccccCceEEecCCc
Confidence 4 467788877643
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.00 E-value=2.5e-06 Score=79.02 Aligned_cols=87 Identities=22% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCC----------------------cccccccc-ccccCCc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSML----------------------WLEEWKME-TGAMQKL 293 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~----------------------~l~~lp~~-i~~L~~L 293 (351)
.++++++|..|+| +++ .+..+|...+.+..|+.|+++.|. .++++|.+ +++|.+|
T Consensus 430 ~l~~l~kLt~L~L-~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDL-SNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeec-ccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 4578899999999 343 455899999999999999999873 33445555 8889999
Q ss_pred cEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 294 KSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 294 ~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
.+|||.+ ..+..+|+.+|++++|++|++.|-+
T Consensus 508 ~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 9999998 6799999999999999999999866
No 33
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=4.8e-05 Score=70.37 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=81.1
Q ss_pred CCCccccchhhHHHHHHHHHccCCC-eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHH
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQPQ-LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMK 92 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~ 92 (351)
-+..+.+|+..++.+.+++...+.. ...|-|+|-+|.|||.+.+++++... . ..+|++.. |+.+.++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHHHH
Confidence 4567889999999999999766543 34457899999999999999999942 2 34899877 999999999999
Q ss_pred HhCC-CCCCccCCC--CCHHHHHHHHHH--hc--CCceEEEEEeCCCChhhHH
Q 048347 93 SLMP-LSALSEILD--NDFEMKKNTLHN--YL--KNKRYLIVIQDVWRGDIWD 138 (351)
Q Consensus 93 ~~~~-~~~~~~~~~--~~~~~~~~~l~~--~L--~~k~~LlVLDdv~~~~~~~ 138 (351)
+... .....+.+. ....+....+.+ .. +++.+++|||+++...+.+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 9952 222111111 111122222222 11 2468999999997665443
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=7.8e-06 Score=80.48 Aligned_cols=133 Identities=11% Similarity=-0.012 Sum_probs=75.3
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~ 96 (351)
++++|-+.-.+.|..++..+. -...+.++|+.|+||||+|+.+++.....+.+...||.+.+ ..+......-...+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 458999988888988887653 23556789999999999999998773333333334454433 1111000000000000
Q ss_pred CCCCccCCCCCHHHHH---HHHHH-hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 97 LSALSEILDNDFEMKK---NTLHN-YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~---~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
. .....+++. +.+.. -+.+++-++|+|+++.. +.++.+...+........+|+ +.
T Consensus 93 ~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 93 A------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred c------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 0 112222222 22221 12356668999999855 567888887776555566665 54
No 35
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.94 E-value=4e-05 Score=73.42 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=74.2
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLM 95 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~ 95 (351)
+++++.++..+.+...|... +-+.++|++|+|||++|+++++.......|+.+.||+++ ++..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r---- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR---- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----
Confidence 45788899999999988753 366679999999999999999884444567788899988 66666654321
Q ss_pred CCCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCChh---hHHHHHhhcC
Q 048347 96 PLSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRGD---IWDFLKEALP 145 (351)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~---~~~~l~~~l~ 145 (351)
........... -..+.+.+.-. ++++.+|+|++.... .+..+...+.
T Consensus 247 P~~vgy~~~~G---~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 PNGVGFRRKDG---IFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CCCCCeEecCc---hHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 11000000011 11222333322 467999999997552 3445544443
No 36
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.94 E-value=6e-05 Score=70.63 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+++.++.+.+++..+. .+.+-++|+.|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999886543 345679999999999999998776
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=97.92 E-value=5.3e-05 Score=74.70 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=40.3
Q ss_pred CCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|.++.++.+.+|+..- +...+.+-|+|+.|+||||+|+.+++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999642 222567889999999999999999998
No 38
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=9.6e-05 Score=74.79 Aligned_cols=137 Identities=8% Similarity=-0.008 Sum_probs=74.1
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~ 97 (351)
+++||.+.-++.|.+++..+. -...+-++|..|+||||+|+.+.+.......++..- ...=...+.|...-...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~P-----CG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQP-----CGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCC-----CcccHHHHHHhcCCCce
Confidence 578999999999999987653 234556899999999999987766522111111000 00000011111000000
Q ss_pred C-CCccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 98 S-ALSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 98 ~-~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
. ..........+++.+.+... ..++.-++|||+++.. ..++.+...+.......++|+ |++.+
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 0 00000112233333333221 1345568889999866 468888888776666777777 66543
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=97.87 E-value=3.4e-05 Score=68.41 Aligned_cols=37 Identities=5% Similarity=-0.016 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEE
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYY 79 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 79 (351)
.+.+.+||+.|+|||+||+.+++. .........|+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeH
Confidence 356789999999999999999988 4333334455543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=2.5e-05 Score=53.82 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCc
Q 048347 242 PHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCA 302 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~ 302 (351)
|+|++|++ .++ .+..+|. .+..+++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 1 p~L~~L~l-~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDL-SNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEE-TSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEEC-CCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 67999999 344 5667875 5789999999999998 68888875 7999999999999864
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.87 E-value=0.00014 Score=67.64 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+++.++.+..++..+. .+.+.++|..|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999987643 344689999999999999999877
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.85 E-value=4.3e-05 Score=71.18 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=53.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHH-HHh
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTL-HNY 118 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 118 (351)
++.-...||++|+||||||+.+... ....|...-=+. ..++++-. +.+.- ...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~~sAv~--~gvkdlr~----------------------i~e~a~~~~ 100 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT--TNAAFEALSAVT--SGVKDLRE----------------------IIEEARKNR 100 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh--hCCceEEecccc--ccHHHHHH----------------------HHHHHHHHH
Confidence 3555558999999999999999987 555553311111 22222222 22222 222
Q ss_pred cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE
Q 048347 119 LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT 155 (351)
Q Consensus 119 L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 155 (351)
..+++.+|++|.|... .+.+. .+|.-.+|..++|
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilI 136 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILI 136 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEE
Confidence 3478999999999754 23333 3566677888888
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.84 E-value=5.1e-06 Score=81.01 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=78.9
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhh
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELW 312 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~ 312 (351)
.++.+..+..|..|+||.| .+.+.|..+..-+++-+|+|++| +++.+|.+ +-+|..|-+|||++ ++++.+|+.+.
T Consensus 95 iP~diF~l~dLt~lDLShN--qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHN--QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIR 170 (1255)
T ss_pred CCchhcccccceeeecchh--hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc-chhhhcCHHHH
Confidence 4456778899999999543 45678888888899999999998 79999988 45899999999998 68999999999
Q ss_pred cCCCCCEEEecCCChhHH
Q 048347 313 RIKALRKLESWWPRPELR 330 (351)
Q Consensus 313 ~L~~L~~L~l~~~~~~~~ 330 (351)
.|.+|++|++++.|-+..
T Consensus 171 RL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred HHhhhhhhhcCCChhhHH
Confidence 999999999999885553
No 44
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00021 Score=67.82 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=41.4
Q ss_pred ccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 8 DNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 8 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.+++.. -++++|-+.-++.+.+.+..+. -...+-++|+.|+||||+|+.+...
T Consensus 8 ~kyrP~~--~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 8 RKWRPQY--FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred HHhCCCc--hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 3344433 3568999999999999887643 3456678999999999999998776
No 45
>PLN03025 replication factor C subunit; Provisional
Probab=97.80 E-value=0.00013 Score=68.05 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.++-++.|.+++..+. ..-+-++|+.|+||||+|..+++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 457898888888888776543 334568999999999999998776
No 46
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.79 E-value=7.4e-05 Score=76.54 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=37.2
Q ss_pred CccccchhhHH---HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 18 KVDLDLEDKME---ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 18 ~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
++++|.+..+. .+.+.+..+ +..-+.++|++|+||||+|+.+++. ...+|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcc
Confidence 56889888774 455655543 3556678999999999999999987 54444
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=5.6e-05 Score=71.68 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=69.3
Q ss_pred cccCCCCCCCCCCCC-CceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeec--CCccc
Q 048347 228 LELEDDPMPAPEKLP-HLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVN--PCAYL 304 (351)
Q Consensus 228 l~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~--~c~~l 304 (351)
|.+....+..++.+| +|+.|.+ .++..+..+|..+ .++|++|++++|..+..+|.+ |+.|++. .|..+
T Consensus 57 L~Is~c~L~sLP~LP~sLtsL~L-snc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L 127 (426)
T PRK15386 57 LYIKDCDIESLPVLPNELTEITI-ENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSI 127 (426)
T ss_pred EEeCCCCCcccCCCCCCCcEEEc-cCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCCCCCccc
Confidence 444454566666666 6999999 6777777777543 258999999999778888865 4444454 34567
Q ss_pred cccChhhhcCC------------------CCCEEEecCCCh-----hHHhhccccc
Q 048347 305 RKFPEELWRIK------------------ALRKLESWWPRP-----ELRQSLHKFE 337 (351)
Q Consensus 305 ~~lP~~i~~L~------------------~L~~L~l~~~~~-----~~~~~l~~~~ 337 (351)
..+|.++..|. +|++|++++|.. .+..++..+.
T Consensus 128 ~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ 183 (426)
T PRK15386 128 KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSIT 183 (426)
T ss_pred ccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEE
Confidence 88888887663 788999988762 2444555555
No 48
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=1.1e-05 Score=67.96 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=27.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccc-cCCCeeEE
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVK-NYFDCCAW 76 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 76 (351)
+.|.|+|++|+||||||+.+++...+. -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 357899999999999999999985544 45666664
No 49
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00015 Score=67.35 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=39.7
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|.++..+.+..++..+. -..++-++|+.|+|||++|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3678999999999999987542 3467777999999999999999887
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.75 E-value=6.5e-05 Score=69.53 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++||+++.++++..++... ......+.++|+.|+|||+||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888632 223445778999999999999999987
No 51
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.72 E-value=0.00053 Score=62.34 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=88.8
Q ss_pred CCCCccccchh---hHHHHHHHHHcc-CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCC------eeEEEEEe--CC
Q 048347 15 WDNKVDLDLED---KMEELLDLLIER-QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD------CCAWVYYQ--LS 82 (351)
Q Consensus 15 ~~~~~~vGr~~---~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~~~--~~ 82 (351)
+..+.+||-.. -++.+..++... ..+..=+.|+|-+|.|||+++++.+... ...++ .++.|... ++
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCC
Confidence 34566777433 334445545433 2345568899999999999999998652 22221 24445554 99
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC-ceEEEEEeCCCCh-----hhHHH---HHhhcCCCCCCcEE
Q 048347 83 LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN-KRYLIVIQDVWRG-----DIWDF---LKEALPDHQNGSRI 153 (351)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~-----~~~~~---l~~~l~~~~~gs~I 153 (351)
...+...|+.+++.+.. ...+...+...+...++. +--++|+|++.+. .+... ....+.+...=+-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred hHHHHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 99999999999999876 344555555555566654 4457899999764 22222 23344444445666
Q ss_pred EE-Eeeccc
Q 048347 154 LT-ALIHIV 161 (351)
Q Consensus 154 iv-TR~~~v 161 (351)
.+ |++.--
T Consensus 185 ~vGt~~A~~ 193 (302)
T PF05621_consen 185 GVGTREAYR 193 (302)
T ss_pred EeccHHHHH
Confidence 66 765543
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0003 Score=69.70 Aligned_cols=129 Identities=11% Similarity=0.034 Sum_probs=75.1
Q ss_pred ccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc------C-----------
Q 048347 8 DNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN------Y----------- 70 (351)
Q Consensus 8 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~----------- 70 (351)
+.+|...+ ++++|-+.-++.|...+..+. -...+-++|+.|+||||+|+.++....... +
T Consensus 8 ~KyRP~~f--~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~ 84 (546)
T PRK14957 8 RKYRPQSF--AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINN 84 (546)
T ss_pred HHHCcCcH--HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 34444433 468999999999999886542 335567899999999999999876411100 0
Q ss_pred --CCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHH-hcCCceEEEEEeCCCCh--hhHHHHHhhcC
Q 048347 71 --FDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHN-YLKNKRYLIVIQDVWRG--DIWDFLKEALP 145 (351)
Q Consensus 71 --F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~ 145 (351)
|....++... .. ....+..++.+.+.. -..+++-++|+|++... ..++.+...+.
T Consensus 85 ~~~~dlieidaa-----------------s~---~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE 144 (546)
T PRK14957 85 NSFIDLIEIDAA-----------------SR---TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE 144 (546)
T ss_pred CCCCceEEeecc-----------------cc---cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh
Confidence 1111111110 00 011111222222221 12356678999999755 56788888887
Q ss_pred CCCCCcEEEE-Eeec
Q 048347 146 DHQNGSRILT-ALIH 159 (351)
Q Consensus 146 ~~~~gs~Iiv-TR~~ 159 (351)
......++|. |.+.
T Consensus 145 epp~~v~fIL~Ttd~ 159 (546)
T PRK14957 145 EPPEYVKFILATTDY 159 (546)
T ss_pred cCCCCceEEEEECCh
Confidence 7666677766 6443
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00027 Score=70.60 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=74.3
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc---C----CCeeEEEEEeCCHHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN---Y----FDCCAWVYYQLSLDMMLDAI 90 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~----F~~~~wv~~~~~~~~~~~~i 90 (351)
+++||-+.-++.|.+.+..+. -.+.+-++|..|+||||+|+.+.+...... . .+.| ..-..-+.|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC-------G~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC-------GQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC-------cccHHHHHH
Confidence 578999999999999987653 345567899999999999988865421100 0 0000 000001111
Q ss_pred HHHhCCCC-CCccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 91 MKSLMPLS-ALSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
...-.... ..........+++.+.+... ..++.-++|||+++.. ..++.+...+.....+.++|+ |.+.
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 00000000 00000112334443333322 1456678999999865 578888888877666677776 6544
No 54
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.72 E-value=0.00029 Score=56.17 Aligned_cols=87 Identities=5% Similarity=0.028 Sum_probs=48.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
..+.|+|+.|+||||+|+.+... .......++.+... .................. ...........+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKK-----ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHHhhhhhccC-----CCCCHHHHHHHHHHHHH
Confidence 46789999999999999999988 44443334555444 111111111111111111 12223333334444444
Q ss_pred Cce-EEEEEeCCCChh
Q 048347 121 NKR-YLIVIQDVWRGD 135 (351)
Q Consensus 121 ~k~-~LlVLDdv~~~~ 135 (351)
..+ .++++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 443 899999998764
No 55
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.71 E-value=4.3e-06 Score=77.52 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=73.1
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCC-CCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhh
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHG-GFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELW 312 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~ 312 (351)
..|.++.+..|..|.+ +.-+++-+|...+ .++++.+|||++| +++++|.++..|++|++||+++ ..+..+|.++|
T Consensus 220 ~lPef~gcs~L~Elh~--g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLg 295 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHV--GENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLG 295 (565)
T ss_pred cCCCCCccHHHHHHHh--cccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccc
Confidence 3456667777777777 3345556777654 8999999999999 7999999999999999999998 56999999999
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
+| +|+.|-+.|-|
T Consensus 296 nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 296 NL-HLKFLALEGNP 308 (565)
T ss_pred cc-eeeehhhcCCc
Confidence 99 89999998866
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00022 Score=73.49 Aligned_cols=147 Identities=10% Similarity=0.030 Sum_probs=77.6
Q ss_pred cccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe-eEEEEEe-CCHH
Q 048347 7 IDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC-CAWVYYQ-LSLD 84 (351)
Q Consensus 7 ~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~-~~~~ 84 (351)
.+.+|...+ +++||-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+++.......... -|-.+-+ ..+.
T Consensus 7 aeKyRP~tF--ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 7 ARKWRPATF--EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred HHHhCCCCH--HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 334554433 568999999999999887642 2345578999999999999999877322111110 0000000 0000
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHH-hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 85 MMLDAIMKSLMPLSALSEILDNDFEMKKNTLHN-YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
+.....+-.+..... ....+..++.+.+.. -..+++-++|||++... +.++.+...+.......++|+ |.+.
T Consensus 84 ~g~~~DviEidAas~---~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 84 QGRFVDLIEVDAASR---TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred cCCCceEEEeccccc---cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 000000000000000 011111222222221 12467779999999765 678888888877666777777 5443
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.70 E-value=0.00023 Score=72.08 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=82.5
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCC---eeEEEEEe-----CCHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD---CCAWVYYQ-----LSLDMMLDA 89 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~-----~~~~~~~~~ 89 (351)
++++|.+.....+.+.+... ....+.|+|+.|+||||+|+.+++..+....+. ..-|+.+. .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 46899999999888877543 345688999999999999999988743333332 23466655 122222211
Q ss_pred HH---------------HHhCCCCC--------------CccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHH
Q 048347 90 IM---------------KSLMPLSA--------------LSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWD 138 (351)
Q Consensus 90 i~---------------~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~ 138 (351)
++ ...+.... ..+.+..+. ..+..+.+.+++++++++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-HHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 11111000 011222332 2467788888888888887776654 4578
Q ss_pred HHHhhcCCCCCCcEEEE
Q 048347 139 FLKEALPDHQNGSRILT 155 (351)
Q Consensus 139 ~l~~~l~~~~~gs~Iiv 155 (351)
.++..+....+...+++
T Consensus 311 ~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLI 327 (615)
T ss_pred hhhhhcccCccceEEEE
Confidence 88777766655555665
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0003 Score=70.40 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=73.9
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~ 97 (351)
+++||.+.-.+.|.+++..+. -...+-++|+.|+||||+|+.+.+........+... ...-..-+.|...-...
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~p-----Cg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTP-----CEVCATCKAVNEGRFID 88 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCC-----CccCHHHHHHhcCCCCc
Confidence 578999999999999997653 245667899999999999998866522111110000 00000001110000000
Q ss_pred C-CCccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 98 S-ALSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 98 ~-~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
. ....-.....+++.+.+... ..++.-++|+|++... ...+.+...+.....+.++|+ |.+.
T Consensus 89 viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 89 LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 0 00000112233333322211 2356678999999865 567778877776555667777 6553
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.69 E-value=9.7e-05 Score=65.10 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEE
Q 048347 23 LEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYY 79 (351)
Q Consensus 23 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 79 (351)
-+..++.+.+++.. .....+.|+|..|+|||+||+.+++. ........++++.
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~ 74 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPL 74 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeH
Confidence 45566777777543 23567889999999999999999987 4333333444443
No 60
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.68 E-value=0.00048 Score=69.86 Aligned_cols=139 Identities=15% Similarity=0.143 Sum_probs=91.3
Q ss_pred CCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHH
Q 048347 15 WDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIM 91 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~ 91 (351)
......|-| ..+.+.|... .+.+++.|..++|.|||||+.+.... ..+ =..+.|++.. -++..+..-++
T Consensus 16 ~~~~~~v~R----~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~--~~~-~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 16 VRPDNYVVR----PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWREL--AAD-GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCccccccc----HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHh--cCc-ccceeEeecCCccCCHHHHHHHHH
Confidence 334555554 4555555544 35789999999999999999999753 222 2347999988 88888988888
Q ss_pred HHhCCCCCC--c-------cCCCCCHHHHHHHHHHhcCC--ceEEEEEeCCCChh---hHHHHHhhcCCCCCCcEEEE-E
Q 048347 92 KSLMPLSAL--S-------EILDNDFEMKKNTLHNYLKN--KRYLIVIQDVWRGD---IWDFLKEALPDHQNGSRILT-A 156 (351)
Q Consensus 92 ~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~---~~~~l~~~l~~~~~gs~Iiv-T 156 (351)
..+..-... + .....+...+...+..-+.+ +++.+||||..-.. --..+.-.+.+...+-.+|+ |
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 888742220 0 02334445566666665544 58999999997542 22333344455556778888 9
Q ss_pred eeccc
Q 048347 157 LIHIV 161 (351)
Q Consensus 157 R~~~v 161 (351)
|+..-
T Consensus 168 R~rP~ 172 (894)
T COG2909 168 RSRPQ 172 (894)
T ss_pred ccCCC
Confidence 98764
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=6.1e-05 Score=48.22 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=29.1
Q ss_pred CcccEEEEecCCccccccccccccCCccEEeecCCccccccC
Q 048347 267 PRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFP 308 (351)
Q Consensus 267 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP 308 (351)
++|++|++++| .+.++|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 46788888888 68888877888888888888885 465554
No 62
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00064 Score=67.59 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=71.7
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC--CeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF--DCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
++++|-+.-++.+.+++..+. -.+.+-++|+.|+||||+|+.+.......... ..|-. + ..-..+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~-C------~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV-C------SACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-C------HHHHHHhcCCC
Confidence 568999999999999887643 23455689999999999999886552111100 00000 0 00000000000
Q ss_pred CCC-CCccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 96 PLS-ALSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 96 ~~~-~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
... ..........+++.+.+... ..+++-++|+|+++.. +..+.+...+.......++|. |.+.
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 000 00000112223332222211 1356678999999865 467778888877655677777 7544
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.64 E-value=0.00021 Score=67.92 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=42.7
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc--C---------CCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER--Q---------PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
+.+..+++.|+++.++++.+.+... . ...+-+.++|+.|+|||++|+++++. ....|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~ 184 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF 184 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE
Confidence 4445567899999999999887421 0 12345789999999999999999998 44443
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00018 Score=69.80 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=75.1
Q ss_pred cccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC--CCeeEEEEEeCCHH
Q 048347 7 IDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY--FDCCAWVYYQLSLD 84 (351)
Q Consensus 7 ~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~ 84 (351)
.+.+|.-.+ +++||-+.-+..|..++..+. -...+-++|+.|+||||+|+.+......... +.. |..+ ....
T Consensus 9 ~~KyRP~~f--~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p-Cg~C--~sC~ 82 (484)
T PRK14956 9 SRKYRPQFF--RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP-CNEC--TSCL 82 (484)
T ss_pred HHHhCCCCH--HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc-cCCC--cHHH
Confidence 334444433 568999999999999887653 2345678999999999999999776221110 110 1111 0111
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCHHHH---HHHHHHh-cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 85 MMLDAIMKSLMPLSALSEILDNDFEMK---KNTLHNY-LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
++...+...+..-.. ......+++ .+.+... ..++.-++|+|++... ++++.+...+........+|. |.
T Consensus 83 ~i~~g~~~dviEIda---as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 83 EITKGISSDVLEIDA---ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred HHHccCCccceeech---hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 111111000000000 011112222 2222211 2456668999999755 578888877765544555555 54
Q ss_pred e
Q 048347 158 I 158 (351)
Q Consensus 158 ~ 158 (351)
+
T Consensus 160 e 160 (484)
T PRK14956 160 E 160 (484)
T ss_pred C
Confidence 3
No 65
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.61 E-value=8.3e-05 Score=62.77 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCC-CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccc-cccCCccEEeecCCccccccC--hhh
Q 048347 236 PAPE-KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMET-GAMQKLKSLIVNPCAYLRKFP--EEL 311 (351)
Q Consensus 236 ~~l~-~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~c~~l~~lP--~~i 311 (351)
+.++ .+.+|+.|+++.+ .+..++ .+..++.|++|++++| .+.+++..+ ..+++|+.|+++++ ++..+- ..+
T Consensus 35 e~L~~~l~~L~~L~Ls~N--~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L 109 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNN--QITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPL 109 (175)
T ss_dssp -S--TT-TT--EEE-TTS----S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGG
T ss_pred cchhhhhcCCCEEECCCC--CCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHH
Confidence 3444 4678999999333 344454 4667899999999999 688886555 46899999999984 555443 345
Q ss_pred hcCCCCCEEEecCCC
Q 048347 312 WRIKALRKLESWWPR 326 (351)
Q Consensus 312 ~~L~~L~~L~l~~~~ 326 (351)
..+++|+.|++.+.|
T Consensus 110 ~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNP 124 (175)
T ss_dssp GG-TT--EEE-TT-G
T ss_pred HcCCCcceeeccCCc
Confidence 678899999999866
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.58 E-value=0.00027 Score=66.14 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=40.0
Q ss_pred CCCccccchhhHHHHHHHHHc---cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIE---RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.+++|+++.++.+..++.. .+.....+.++|+.|+|||+||+.+++.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 446799999999999888864 1233456779999999999999999998
No 67
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.00042 Score=65.86 Aligned_cols=113 Identities=11% Similarity=0.063 Sum_probs=78.4
Q ss_pred CCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe--eEEEE-Ee-CCHHHHHHH
Q 048347 16 DNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC--CAWVY-YQ-LSLDMMLDA 89 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~-~~-~~~~~~~~~ 89 (351)
..+.++||+.+...+.+++... .+...-+-|.|-.|.|||.+...++.+ ....... ++.+. .+ ....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHHH
Confidence 4577999999999999999753 355677788899999999999999998 4333332 23322 22 677889999
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC--ceEEEEEeCCCCh
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYLKN--KRYLIVIQDVWRG 134 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~ 134 (351)
|...+..... ......+..+.+.+.... +.+++|+|.++..
T Consensus 226 I~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 226 IFSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 9988844333 222334555555555544 3688899988544
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.00067 Score=68.48 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++||.+.-++.|.+++..+. -.+-+-++|+.|+||||+|+.+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 578999999999999987653 2356678999999999999988665
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.00076 Score=66.44 Aligned_cols=132 Identities=8% Similarity=0.001 Sum_probs=72.7
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC------CCeeEEEEEeCCHHHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY------FDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~~~~~~~~~i~ 91 (351)
.+++|-+.-+..|...+..+. -..-+-++|+.|+||||+|+.+++....... +.. |-.+- --..+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~-C~~C~------~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT-CEQCT------NCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC-CCCCh------HHHHHh
Confidence 568999998888888776542 2345678999999999999999766221111 110 00000 000110
Q ss_pred HHhCCCCC-CccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 92 KSLMPLSA-LSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
........ ...-.....+++.+.+... +.+++-++|+|+++.. .+++.+...+......+++|. |.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00000000 0000112333333333221 2456778999999865 578888888877666667666 53
No 70
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.55 E-value=1.2e-05 Score=78.51 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=91.7
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhh-hc
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEEL-WR 313 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i-~~ 313 (351)
...++.+|.||.+.+..|......+|..+-.+..|.+|+|+.| .+.+.|.++.+-.++-+|+|++ +.++.+|.++ .|
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin 148 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN 148 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHh
Confidence 3566789999999997777777779999999999999999999 7999999999999999999998 6899999887 59
Q ss_pred CCCCCEEEecCCChhH-HhhccccccCceeeEEecC
Q 048347 314 IKALRKLESWWPRPEL-RQSLHKFEEIDRLDMQIYP 348 (351)
Q Consensus 314 L~~L~~L~l~~~~~~~-~~~l~~~~~~~~~~~~~~P 348 (351)
|+-|-.||+++..-++ .++++++..++..++.+=|
T Consensus 149 LtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 9999999999876444 4455555555555555544
No 71
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.54 E-value=0.00021 Score=63.20 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY 78 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 78 (351)
.++|+|..|.|||||+..+... ....|..+.+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 5668899999999999999988 888997766554
No 72
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00088 Score=64.40 Aligned_cols=47 Identities=9% Similarity=-0.156 Sum_probs=37.1
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|-+.-++.|.+++..+. -..-+-++|+.|+||||+|..+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999988888988886542 2344668999999999999887665
No 73
>PRK08116 hypothetical protein; Validated
Probab=97.53 E-value=0.00026 Score=64.25 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=46.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.-+.++|..|+|||.||.++++. +......+++++ ..+++..+......... .+.. .+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~----~~~ll~~i~~~~~~~~~------~~~~----~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN----FPQLLNRIKSTYKSSGK------EDEN----EIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE----HHHHHHHHHHHHhcccc------ccHH----HHHHHhcC
Confidence 34779999999999999999998 544433444543 45666666554433211 1222 23344444
Q ss_pred ceEEEEEeCCC
Q 048347 122 KRYLIVIQDVW 132 (351)
Q Consensus 122 k~~LlVLDdv~ 132 (351)
-. ||||||+-
T Consensus 179 ~d-lLviDDlg 188 (268)
T PRK08116 179 AD-LLILDDLG 188 (268)
T ss_pred CC-EEEEeccc
Confidence 44 88999993
No 74
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.00064 Score=60.59 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+.++......+..++... .+|.+.|.+|.|||+||.++..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 44677999999999988653 48889999999999999998774
No 75
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.001 Score=65.81 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=76.3
Q ss_pred cccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHH
Q 048347 7 IDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMM 86 (351)
Q Consensus 7 ~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 86 (351)
.+.||.-.+ +++||-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+.........+...- ...=..
T Consensus 7 ~~kyRP~~f--~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p-----Cg~C~~ 78 (509)
T PRK14958 7 ARKWRPRCF--QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANP-----CNDCEN 78 (509)
T ss_pred HHHHCCCCH--HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCccc-----CCCCHH
Confidence 344555433 468999999999999997653 234566899999999999988866522111111000 000000
Q ss_pred HHHHHHHhCCCC-CCccCCCCCHHHHHHHHHH----hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eee
Q 048347 87 LDAIMKSLMPLS-ALSEILDNDFEMKKNTLHN----YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALI 158 (351)
Q Consensus 87 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~ 158 (351)
-+.|...-..+. ..........+++.+.+.. -..++.-++|+|+++.. +..+.+...+.......++|. |.+
T Consensus 79 C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred HHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 000000000000 0000011223333222211 11356668889999865 577888888777666777777 644
Q ss_pred c
Q 048347 159 H 159 (351)
Q Consensus 159 ~ 159 (351)
.
T Consensus 159 ~ 159 (509)
T PRK14958 159 H 159 (509)
T ss_pred h
Confidence 3
No 76
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.001 Score=66.91 Aligned_cols=138 Identities=9% Similarity=0.016 Sum_probs=71.1
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC--CCeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY--FDCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
+++||-+.-++.|.+++..+. -...+-++|..|+||||+|+.+......... ......-. ...-..-+.|...-.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p--Cg~C~~C~~i~~g~h 92 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP--CGVCQACRDIDSGRF 92 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC--CCccHHHHHHHcCCC
Confidence 568898888888888887653 3456678999999999999888443111000 00000000 000001111100000
Q ss_pred CCC-CCccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eee
Q 048347 96 PLS-ALSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALI 158 (351)
Q Consensus 96 ~~~-~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~ 158 (351)
... ....-.....+++.+.+... ..++.-++|||+++.. +.++.+...+.......++|+ |.+
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 000 00000112233333333221 1245568899999865 577888888877665667776 644
No 77
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.49 E-value=0.00084 Score=59.20 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=65.9
Q ss_pred CCCCCccccchhhHHHHHHHHHc--cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIE--RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
.+.-++++|.|+.++.|++-... .+....-+-+||..|.|||++++++.+...-++ .--|.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~----------- 87 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVS----------- 87 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEEC-----------
Confidence 45567799999999988664422 122344555799999999999999988722222 1223322
Q ss_pred HHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCC---ChhhHHHHHhhcCC
Q 048347 92 KSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVW---RGDIWDFLKEALPD 146 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~ 146 (351)
. .+..+...+.+.++. +..||+|.+||+. +...+..++..+..
T Consensus 88 ------k----~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 88 ------K----EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ------H----HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 0 022334444444442 3579999999995 22467777776653
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.001 Score=65.19 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++||.+.-.+.|...+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999888787877776542 2345678999999999999999765
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.49 E-value=0.0013 Score=62.04 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|.++.++.+.+++..+. -...+-++|+.|+||||+|+.+...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999887643 3456778999999999999887654
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00066 Score=68.48 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=73.7
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~ 97 (351)
+++||-+.-++.|...+..+. -...+-++|..|+||||+|+.+.........+... ... .....+++...
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~-----pCg----~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITAT-----PCG----ECDNCREIEQG 85 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCC-----CCC----CCHHHHHHHcC
Confidence 568999999999988887653 23456789999999999999987662221110000 000 00111112111
Q ss_pred CCC--ccC---CCCCHHHHHHHHHH----hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 98 SAL--SEI---LDNDFEMKKNTLHN----YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 98 ~~~--~~~---~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
... .++ .....+++.+.+.. -..+++-++|||++... ..++.+...+.......++|. |.+.+
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 000 000 01122333222211 12466778999999755 578888887776655666666 54433
No 81
>PRK07261 topology modulation protein; Provisional
Probab=97.47 E-value=0.00025 Score=59.92 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|+|++|+||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999766
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.43 E-value=1.3e-05 Score=77.36 Aligned_cols=111 Identities=23% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhc
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
..+.+.++..|.+|+|+.+ .+..+|..++.++ |++|-+++| +++.+|.++|.+..|..|+.+. ..+..+|..+++
T Consensus 113 ip~~i~~L~~lt~l~ls~N--qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~ 187 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSN--QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGY 187 (722)
T ss_pred cchhhhhhhHHHHhhhccc--hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhh-hhhhhchHHhhh
Confidence 4456678888888888433 4446777777777 888888888 7888998888888888888886 468888888888
Q ss_pred CCCCCEEEecC-----CChhHHhhccccccC-ceeeEEecCCC
Q 048347 314 IKALRKLESWW-----PRPELRQSLHKFEEI-DRLDMQIYPIG 350 (351)
Q Consensus 314 L~~L~~L~l~~-----~~~~~~~~l~~~~~~-~~~~~~~~P~~ 350 (351)
|.+|+.|+++. .++|+. .|.-.+.. -|+++..||..
T Consensus 188 l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchh
Confidence 88888888754 556665 33322211 26777777753
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0013 Score=64.33 Aligned_cols=131 Identities=14% Similarity=0.083 Sum_probs=69.2
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc--CCCeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN--YFDCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
+++||-+.-++.|.+.+..+. -..-+-++|+.|+||||+|+.+........ ..+.| ..-..-+.|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pC-------g~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPC-------GTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCc-------cccHHHHHHhccCC
Confidence 568999988888888776542 233566899999999999988865310000 00000 00000011110000
Q ss_pred CCCC-CccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-E
Q 048347 96 PLSA-LSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-A 156 (351)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-T 156 (351)
.+.. ...-+....+++.+.+... +.++.-++|+|++... ++++.+...+.+.....++|. |
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 0000 0000112223322222111 1356668999999754 567888888877666777777 5
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.00098 Score=66.48 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=42.0
Q ss_pred ccccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 6 MIDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 6 ~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+.+|+..+ .+++|.+.-++.+.+.+..+. -.+-+-++|+.|+||||+|+.+...
T Consensus 6 ~~~KyRP~~F--~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 6 FYRKYRPHNF--KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHHHhCCCCH--HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344555433 578999999999999886643 2355668999999999999998665
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.41 E-value=0.00052 Score=72.02 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++||+++++.+++.|.....+ .+ .++|.+|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~-n~-lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN-NP-ILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC-Ce-EEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999765433 23 48999999999999998776
No 86
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.40 E-value=0.00047 Score=64.70 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=63.0
Q ss_pred HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC-Ce-eEEEEEe---CCHHHHHHHHHHHhCCCCCCcc
Q 048347 28 EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF-DC-CAWVYYQ---LSLDMMLDAIMKSLMPLSALSE 102 (351)
Q Consensus 28 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~---~~~~~~~~~i~~~~~~~~~~~~ 102 (351)
.++++.+..=+ +-..+.|+|..|+|||||++.+.+. +.... +. ++|+.+. -++.++.+.+...+........
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 34566555322 2245689999999999999998887 44433 33 4676777 8889999999887765433110
Q ss_pred C-CCCCHHHHHHHHHHhc--CCceEEEEEeCCC
Q 048347 103 I-LDNDFEMKKNTLHNYL--KNKRYLIVIQDVW 132 (351)
Q Consensus 103 ~-~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~ 132 (351)
. .............+.+ .+++.++|+|++-
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 0 0001111111222222 5899999999994
No 87
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0019 Score=61.45 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
=++++|.+.-.+.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999997652 3457779999999999999998766
No 88
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.39 E-value=0.00017 Score=60.84 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCCCCCceEEEEecccccCceeeeCCC-CCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhh-cCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHG-GFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELW-RIK 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~-~L~ 315 (351)
+.+...++.|+| .+..+..+. .++ .+.+|+.|++++| .+..++ .+..|++|+.|++++ ..+..+++++. +++
T Consensus 15 ~~n~~~~~~L~L--~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNL--RGNQISTIE-NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-T
T ss_pred cccccccccccc--ccccccccc-chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccchHHhCC
Confidence 344556899999 333443443 354 6789999999999 799887 588899999999998 57888987774 699
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|++++-.
T Consensus 89 ~L~~L~L~~N~ 99 (175)
T PF14580_consen 89 NLQELYLSNNK 99 (175)
T ss_dssp T--EEE-TTS-
T ss_pred cCCEEECcCCc
Confidence 99999998765
No 89
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.002 Score=64.62 Aligned_cols=132 Identities=9% Similarity=-0.014 Sum_probs=72.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC--CeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF--DCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
+++||-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+.......... ..|- .| ..-+.|...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg-~C------~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG-VC------ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc-cc------HHHHHhhcccC
Confidence 578999999999999987653 34456789999999999999887652211111 0000 00 00111110000
Q ss_pred CCCCCccC---CCCCHHHHH---HHHHHh-cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 96 PLSALSEI---LDNDFEMKK---NTLHNY-LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 96 ~~~~~~~~---~~~~~~~~~---~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
.....-++ .....+++. +.+... ..+++-++|+|++... +..+.+...+.......++|+ |.
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 00000000 111223222 222111 1345668899999754 678888888887666777776 63
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.35 E-value=0.00074 Score=70.03 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++||+++++.+++.|...... . +.++|.+|+|||++|+.++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~-n-~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKN-N-PLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCC-c-eEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999988765422 2 347899999999999999877
No 91
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.35 E-value=0.0004 Score=59.94 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=40.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~ 97 (351)
+|+.++|+.|+||||.+.+++...+. .-..+..++.. ....+-++..++.+..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 68999999999999999888877433 33346677776 45566777788888765
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.34 E-value=0.00074 Score=59.39 Aligned_cols=120 Identities=10% Similarity=0.133 Sum_probs=66.4
Q ss_pred Cccccc-hhhHHHHHHHHHcc-CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe--eEEEEEeCCHHHHHHHHHHH
Q 048347 18 KVDLDL-EDKMEELLDLLIER-QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC--CAWVYYQLSLDMMLDAIMKS 93 (351)
Q Consensus 18 ~~~vGr-~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~i~~~ 93 (351)
+.++|- .+..-...+.+... +.....+-|+|..|+|||.|.+++++. ....... ++++ +..++...+...
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~----~~~~f~~~~~~~ 82 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL----SAEEFIREFADA 82 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE----EHHHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee----cHHHHHHHHHHH
Confidence 344563 23333344444443 333456789999999999999999998 4443322 3343 345666666655
Q ss_pred hCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh---hhHHH-HHhhcCC-CCCCcEEEE-Ee
Q 048347 94 LMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG---DIWDF-LKEALPD-HQNGSRILT-AL 157 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~-l~~~l~~-~~~gs~Iiv-TR 157 (351)
+... . ...+++.+++-. ++++||+... ..|+. +...+.. ...|.++|+ ++
T Consensus 83 ~~~~-~------------~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 83 LRDG-E------------IEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp HHTT-S------------HHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHcc-c------------chhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 5442 1 244555665544 5788999754 22322 2222221 233567777 54
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0023 Score=61.19 Aligned_cols=46 Identities=11% Similarity=-0.065 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHHccCC--------CeEEEEEEcCCCChHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQP--------QLSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
++++|-+.-++.|.+.+..+.. -.+-+-++|+.|+|||++|+.+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999876421 235577899999999999988754
No 94
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.31 E-value=0.00021 Score=66.75 Aligned_cols=49 Identities=6% Similarity=0.221 Sum_probs=42.0
Q ss_pred CCccccchhhHHHHHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 17 NKVDLDLEDKMEELLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
+++++|.++.++++++++... +.+.+++.++|+.|+||||||+.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 337999999999999999763 2356899999999999999999998883
No 95
>PRK08727 hypothetical protein; Validated
Probab=97.31 E-value=0.00076 Score=59.93 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=26.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY 78 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 78 (351)
..+.|+|..|+|||.||+.+++. .........+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 46889999999999999999887 444433445554
No 96
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.30 E-value=0.00074 Score=64.72 Aligned_cols=51 Identities=12% Similarity=0.020 Sum_probs=39.3
Q ss_pred CCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.-+++.|+++.++++.+.+... -...+-|.++|++|+|||++|+++++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 344456789999999999877421 123455778999999999999999987
No 97
>PRK12377 putative replication protein; Provisional
Probab=97.29 E-value=0.0011 Score=59.37 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=45.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
..-+.++|..|+|||.||.++.+. +......+.++++ .+++..+....... .... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~----~~l~~~l~~~~~~~--------~~~~----~~l~~l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV----PDVMSRLHESYDNG--------QSGE----KFLQEL- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH----HHHHHHHHHHHhcc--------chHH----HHHHHh-
Confidence 357889999999999999999998 5554444555543 45555554443211 1112 222333
Q ss_pred CceEEEEEeCCC
Q 048347 121 NKRYLIVIQDVW 132 (351)
Q Consensus 121 ~k~~LlVLDdv~ 132 (351)
.+--||||||+-
T Consensus 162 ~~~dLLiIDDlg 173 (248)
T PRK12377 162 CKVDLLVLDEIG 173 (248)
T ss_pred cCCCEEEEcCCC
Confidence 355689999993
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.002 Score=67.07 Aligned_cols=134 Identities=9% Similarity=-0.059 Sum_probs=73.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe-eEEEEEeCCHHHHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC-CAWVYYQLSLDMMLDAIMKSLMP 96 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~i~~~~~~ 96 (351)
.++||.+.-++.|...+..+. -.+.+-++|+.|+||||+|+.+.+.......... -|=.|- --+.|...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~------sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD------SCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH------HHHHHHcCCCC
Confidence 468999999999999887653 3356678999999999999988655221111100 000000 00000000000
Q ss_pred CCCCccC---CCCCHHHHHHHHH----HhcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eee
Q 048347 97 LSALSEI---LDNDFEMKKNTLH----NYLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALI 158 (351)
Q Consensus 97 ~~~~~~~---~~~~~~~~~~~l~----~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~ 158 (351)
......+ .....+++.+... .-..++.-++|||+++.. +.++.|...+.+....+++|+ |.+
T Consensus 88 ~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred CCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0000000 1112333332111 113456667889999866 677888888887666777776 643
No 99
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0025 Score=64.41 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=78.6
Q ss_pred CcccccccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc---CCCeeEEEE
Q 048347 2 TAESMIDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN---YFDCCAWVY 78 (351)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~ 78 (351)
+-+...+.+|...+ +++||-+.-++.|..++..+. -...+-++|..|+||||+|+.+........ .+..
T Consensus 2 ~~~~l~~kyRP~~~--~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~----- 73 (585)
T PRK14950 2 TVQVLYRKWRSQTF--AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP----- 73 (585)
T ss_pred ccHHHHHHhCCCCH--HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-----
Confidence 33344455555544 478999999999988887542 235567899999999999999876521111 1111
Q ss_pred EeCCHHHHHHHHHHHhCCCCC-CccCCCCCHHHHHHHH---HH-hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCc
Q 048347 79 YQLSLDMMLDAIMKSLMPLSA-LSEILDNDFEMKKNTL---HN-YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGS 151 (351)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l---~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs 151 (351)
++.-+..+.|......... .........+++.+.+ .. -..+++-++|+|++... +..+.+...+.+....+
T Consensus 74 --c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 74 --CGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA 151 (585)
T ss_pred --CccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence 0111222333221111000 0000112233332222 11 12345678999999744 56777877776655566
Q ss_pred EEEE-Ee
Q 048347 152 RILT-AL 157 (351)
Q Consensus 152 ~Iiv-TR 157 (351)
.+|+ +.
T Consensus 152 v~Il~t~ 158 (585)
T PRK14950 152 IFILATT 158 (585)
T ss_pred EEEEEeC
Confidence 6666 53
No 100
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.27 E-value=0.0021 Score=56.61 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=57.2
Q ss_pred HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC------CeeEEEEEe--CCHHHHHHHHHHHhCCCCC--
Q 048347 30 LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF------DCCAWVYYQ--LSLDMMLDAIMKSLMPLSA-- 99 (351)
Q Consensus 30 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~--~~~~~~~~~i~~~~~~~~~-- 99 (351)
|-.+|..+-+.-.++.|.|.+|+|||+||.++... ....- ..++|++.. ++...+ ..++........
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~ 84 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEV 84 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhh
Confidence 33444334356689999999999999999998765 22222 446777766 555443 344443322110
Q ss_pred ---CccCCCCCHHHHHHHHHHhcC----CceEEEEEeCCC
Q 048347 100 ---LSEILDNDFEMKKNTLHNYLK----NKRYLIVIQDVW 132 (351)
Q Consensus 100 ---~~~~~~~~~~~~~~~l~~~L~----~k~~LlVLDdv~ 132 (351)
..-....+.+++...+.+..+ .+--++|+|.+.
T Consensus 85 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 85 LDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 000123445555555555543 344578888874
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.27 E-value=0.00083 Score=70.62 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++||+.++..+++.|...... -+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~--n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKN--NPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcC--ceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999988776432 3447899999999999998877
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00019 Score=56.54 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
||+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 103
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.25 E-value=0.00047 Score=62.22 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=57.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeE-EEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHHH----
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCA-WVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFEM---- 110 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~---- 110 (351)
..++|.|..|+||||||+.+++. ++.+|+..+ ++-+. -.+.++..++...=..+... ...+......
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56889999999999999999999 666676544 33343 56666666665431111000 0001111111
Q ss_pred -HHHHHHHhc---CCceEEEEEeCCCCh-hhHHHHHh
Q 048347 111 -KKNTLHNYL---KNKRYLIVIQDVWRG-DIWDFLKE 142 (351)
Q Consensus 111 -~~~~l~~~L---~~k~~LlVLDdv~~~-~~~~~l~~ 142 (351)
..-.+.+++ ++++.|+++||+-.. +++..+..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~ 184 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSA 184 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHH
Confidence 122334444 389999999999543 34444443
No 104
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0025 Score=64.33 Aligned_cols=46 Identities=9% Similarity=-0.132 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++||-+.-++.|.+.+..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988886542 2344668999999999999887654
No 105
>PRK06696 uridine kinase; Validated
Probab=97.24 E-value=0.00041 Score=61.19 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHc-cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 23 LEDKMEELLDLLIE-RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 23 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|++-+++|.+.+.. ...+..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56777888888865 3456889999999999999999999987
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.24 E-value=0.00096 Score=70.02 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-+.++||++++.++++.|...... -+.++|.+|+||||+|+.+..+
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~--n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQN--NPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcC--ceeEECCCCCCHHHHHHHHHHH
Confidence 357899999999999988765422 2347999999999999999887
No 107
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.24 E-value=0.0055 Score=52.39 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=27.2
Q ss_pred CceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eee
Q 048347 121 NKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALI 158 (351)
Q Consensus 121 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~ 158 (351)
+.+-++|+|++... ++++.+...+......+.+|+ |++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 56678999999755 457778888876665666666 653
No 108
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.23 E-value=0.00097 Score=58.82 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=39.2
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHH
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMM 86 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~ 86 (351)
.|-++|..+=+.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. ++.+.+
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e~~~~~r~ 67 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTEGLSPERF 67 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECCCCCHHHH
Confidence 344444444356689999999999999999998876 43444567888766 555443
No 109
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.23 E-value=0.00036 Score=60.71 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCCccccchhhHHHHHHHHHc---cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIE---RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
.-+++||-+.-++.+.-++.. ..+...-+-.||++|.||||||..+.+. ....|
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 457899988888887665542 2344666778999999999999999999 44444
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.23 E-value=0.00017 Score=57.55 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|-|+|+.|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 468999999999999999999
No 111
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.22 E-value=0.0027 Score=57.40 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=32.9
Q ss_pred ccccchhhHHHHHHHHHc---------c----CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIE---------R----QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~---------~----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.+.-++++.+.... . .+...-+.++|++|+||||+|+.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 478988777776544321 1 234455778999999999999999765
No 112
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.20 E-value=0.0034 Score=62.55 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=94.2
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc--C-CCeEEEEEEcCCCChHHHHHHHHhCCcc---cccCCCeeEEEEEe----CC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER--Q-PQLSLVAIIDTMGFDRTAFIGEAYNSSY---VKNYFDCCAWVYYQ----LS 82 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~--~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~~~----~~ 82 (351)
.+.....+-+||.+..+|...+..- + ...+.+-|.|-.|.|||..+..|.+..+ -++.-....+|.+. ..
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 3445677889999999998888542 2 2344788999999999999999988633 22233334455555 78
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC-----CceEEEEEeCCCCh--hhHHHHHhhcCC-CCCCcEEE
Q 048347 83 LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK-----NKRYLIVIQDVWRG--DIWDFLKEALPD-HQNGSRIL 154 (351)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVLDdv~~~--~~~~~l~~~l~~-~~~gs~Ii 154 (351)
+.+++..|..++..... ......+.+..++. .+.+++++|+++.. ...+-+...|.| ...+||++
T Consensus 471 ~~~~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred HHHHHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceE
Confidence 99999999999988655 45556666666664 46788889988544 123344444554 55688877
Q ss_pred E
Q 048347 155 T 155 (351)
Q Consensus 155 v 155 (351)
|
T Consensus 544 v 544 (767)
T KOG1514|consen 544 V 544 (767)
T ss_pred E
Confidence 6
No 113
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.20 E-value=0.0015 Score=58.25 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=52.2
Q ss_pred HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCC
Q 048347 28 EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDND 107 (351)
Q Consensus 28 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 107 (351)
..+.+.......+...+.++|.+|+|||+||.++++. ....-..+++++ +.++...+....... ..+
T Consensus 86 ~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it----~~~l~~~l~~~~~~~-------~~~ 152 (244)
T PRK07952 86 SKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT----VADIMSAMKDTFSNS-------ETS 152 (244)
T ss_pred HHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE----HHHHHHHHHHHHhhc-------ccc
Confidence 3344444322223456789999999999999999998 444433445553 445555554433211 112
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCh--hhHH
Q 048347 108 FEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWD 138 (351)
Q Consensus 108 ~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~ 138 (351)
... +.+.+.+ .=+|||||+... .+|.
T Consensus 153 ~~~----~l~~l~~-~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 153 EEQ----LLNDLSN-VDLLVIDEIGVQTESRYE 180 (244)
T ss_pred HHH----HHHHhcc-CCEEEEeCCCCCCCCHHH
Confidence 222 3333443 347888999544 3454
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.20 E-value=0.0004 Score=44.39 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCccEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 291 QKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 291 ~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
++|++|++++ ..+..+|..+++|++|+.|++++.+
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCC
Confidence 4799999999 5799999999999999999999987
No 115
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.19 E-value=0.00077 Score=67.95 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=40.5
Q ss_pred CCCccccchhhHHHHHHHHHccC---CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQ---PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-++++|-++.++++..++.... ...+++.++|+.|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999987542 23467999999999999999999877
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0037 Score=62.95 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=38.2
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|.+.-++.|.+.+..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999887653 2345668999999999999998765
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.16 E-value=0.0011 Score=69.90 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++||+.++..++..|.....+ -+.++|.+|+|||++|+.+..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~--n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKN--NPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCC--ceEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999998765433 3336899999999999998877
No 118
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.14 E-value=0.0012 Score=57.51 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=36.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLD 88 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~ 88 (351)
++-+++.|+|.+|+|||++|.++... .......++|++.. +....+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCCHHHHHH
Confidence 56789999999999999999998877 44445677888876 55555443
No 119
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.14 E-value=7.3e-05 Score=76.09 Aligned_cols=91 Identities=24% Similarity=0.284 Sum_probs=59.1
Q ss_pred ccCCCCCCCCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccccc
Q 048347 229 ELEDDPMPAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKF 307 (351)
Q Consensus 229 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l 307 (351)
++.+...|-+-.+++|++|+|++|. +..+|.+ ..+|..|+.|+|+|| .+..+|.++-++..|++|...+ ..+..+
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNr--L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~f 445 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNR--LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSF 445 (1081)
T ss_pred cccccchhhhccccceeeeeecccc--cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeec
Confidence 4566677888899999999995542 2245543 567777777788887 5777776666666666666555 345556
Q ss_pred ChhhhcCCCCCEEEecC
Q 048347 308 PEELWRIKALRKLESWW 324 (351)
Q Consensus 308 P~~i~~L~~L~~L~l~~ 324 (351)
| .+.+|+.|+.+|++.
T Consensus 446 P-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred h-hhhhcCcceEEeccc
Confidence 6 455555555555543
No 120
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.12 E-value=0.0022 Score=55.18 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=45.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccC-CC---eeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHH
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNY-FD---CCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHN 117 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (351)
||+|.|.+|+||||+|+++... +... .. ....++.. +....-................+...+.+.+.+.++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999877 4322 22 12333322 2222211111111111111112356777888888877
Q ss_pred hcCCceEEE
Q 048347 118 YLKNKRYLI 126 (351)
Q Consensus 118 ~L~~k~~Ll 126 (351)
...++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666666544
No 121
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.11 E-value=9.3e-05 Score=75.35 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=71.1
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+.+.+.-+|++|++ ++...+ ..|..++.+.+|+.|+++.| .+.++|.+.+++.+|++|.|.. +.+..+|.++..++
T Consensus 39 ~~~~~~v~L~~l~l-snn~~~-~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDL-SNNQIS-SFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELK 114 (1081)
T ss_pred HHhhheeeeEEeec-cccccc-cCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheecc-chhhcCchhHHhhh
Confidence 33333445999999 344443 67888999999999999998 6999999999999999999994 88999999999999
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|+.|+++.
T Consensus 115 nl~~LdlS~ 123 (1081)
T KOG0618|consen 115 NLQYLDLSF 123 (1081)
T ss_pred cccccccch
Confidence 999999986
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.10 E-value=0.004 Score=65.73 Aligned_cols=119 Identities=8% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCccccchhhHHHHHHHHHcc------C-CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHH
Q 048347 17 NKVDLDLEDKMEELLDLLIER------Q-PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLD 88 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~ 88 (351)
...++|.++-++.+...+... . ....++.+.|+.|+|||++|+.+... ....-...+.+..+ +.......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchHH
Confidence 356899999999998888642 1 22457789999999999999999876 33222233444444 32222211
Q ss_pred HHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcC
Q 048347 89 AIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALP 145 (351)
Q Consensus 89 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~ 145 (351)
.+ ++.+.. .........+.+.++. ....+++||++... +.++.+...+.
T Consensus 642 ~l---~g~~~g--~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 642 RL---IGAPPG--YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred Hh---cCCCCC--ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 11 121110 0111122233333332 23358999999755 56666666554
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.10 E-value=0.0014 Score=64.42 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++.|.+..++++.+.+... -...+-+-++|+.|.|||++|+++++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 55778999999998887421 012344778999999999999999998
No 124
>PRK07667 uridine kinase; Provisional
Probab=97.09 E-value=0.00072 Score=58.25 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=32.7
Q ss_pred hHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 26 KMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 26 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+++.+.+.....+..+|+|-|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356777777666566799999999999999999999887
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=97.08 E-value=0.0066 Score=55.65 Aligned_cols=47 Identities=6% Similarity=-0.028 Sum_probs=32.7
Q ss_pred CccccchhhHHHHHHHHH---cc----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLI---ER----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~---~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|.+.-++++.++.. -. ......+.++|.+|+||||+|+.++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468898877776655532 11 112234678999999999999999765
No 126
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00023 Score=72.67 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=54.3
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccC--hhhhcCCCC
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFP--EELWRIKAL 317 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP--~~i~~L~~L 317 (351)
.||.|++|.+.+..+....+..--.+|++|+.||++++ ++..+ ..+++|.+|+.|.+++. .++.-+ ..+.+|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhcccCC
Confidence 47888888884333333333334557888888888887 67777 46778888887777752 233222 356677777
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
+.||+|...
T Consensus 223 ~vLDIS~~~ 231 (699)
T KOG3665|consen 223 RVLDISRDK 231 (699)
T ss_pred Ceeeccccc
Confidence 777777643
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.06 E-value=0.0023 Score=67.29 Aligned_cols=118 Identities=5% Similarity=0.058 Sum_probs=65.0
Q ss_pred CccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDA 89 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~ 89 (351)
..++|-++-++.+.+.+... .....++.++|+.|+|||.||+.+... +-......+-+.++ |....-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~--- 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHT--- 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhh---
Confidence 56889999999998888531 233567889999999999999888665 32222222222222 221111
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcC
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALP 145 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~ 145 (351)
+.+-++.+. ..........+.+.+++ +...+|+||++... +.++.+...+.
T Consensus 641 ~~~l~g~~~--gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld 693 (852)
T TIGR03345 641 VSRLKGSPP--GYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFD 693 (852)
T ss_pred hccccCCCC--CcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhh
Confidence 111111110 01112222234444443 45579999999755 45555555443
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0043 Score=62.28 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=42.5
Q ss_pred cccccccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 3 AESMIDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+....+|...+ ++++|-+.-++.|.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 3 ~~~la~KyRP~sf--~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 3 HASLTARYRPQTF--AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred cchHHHHhCCCCH--HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3444455555544 467898888888888886542 2456668999999999999988776
No 129
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.04 E-value=0.0025 Score=62.36 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=45.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
..-+.|+|..|+|||+||+.+.+. +...+.....+++ +..++...+...+... .. +.+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi--~~~~~~~~~~~~~~~~---------~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYV--TSEKFTNDFVNALRNN---------TM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEE--EHHHHHHHHHHHHHcC---------cH----HHHHHHHh
Confidence 345789999999999999999998 6555432222222 3344555555444321 11 23334444
Q ss_pred CceEEEEEeCCCC
Q 048347 121 NKRYLIVIQDVWR 133 (351)
Q Consensus 121 ~k~~LlVLDdv~~ 133 (351)
+ .-+|+|||+..
T Consensus 211 ~-~dlLiiDDi~~ 222 (450)
T PRK00149 211 S-VDVLLIDDIQF 222 (450)
T ss_pred c-CCEEEEehhhh
Confidence 3 34788999964
No 130
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.04 E-value=0.0067 Score=55.57 Aligned_cols=47 Identities=6% Similarity=0.001 Sum_probs=31.7
Q ss_pred CccccchhhHHHHHHHHHc---c------C----CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIE---R------Q----PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~---~------~----~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|.++-++++.++... . + ....-+.++|..|.|||++|+.+...
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 3688988888777664321 1 0 11224668999999999999776554
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.0082 Score=59.13 Aligned_cols=46 Identities=11% Similarity=-0.034 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|-+.-.+.+.+++..+. -....-++|+.|+||||+|+.+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999997653 2345667999999999999987665
No 132
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0073 Score=56.08 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=71.9
Q ss_pred ccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC-------------------CCeeEEEEE
Q 048347 19 VDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-------------------FDCCAWVYY 79 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~~ 79 (351)
+++|-++...++..+......-..-+-++|+.|+||||+|.++....--... ++....+.-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 5778888899999999865433344778999999999999888765211110 111222222
Q ss_pred e--CC---HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcE
Q 048347 80 Q--LS---LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSR 152 (351)
Q Consensus 80 ~--~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~ 152 (351)
+ .. ..+..+++.+....... .++.-++++|+++.. ++-..+...+......++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 2 11 12222222222211110 256778999999766 566777777777777778
Q ss_pred EEE-Ee
Q 048347 153 ILT-AL 157 (351)
Q Consensus 153 Iiv-TR 157 (351)
+|+ |.
T Consensus 142 ~il~~n 147 (325)
T COG0470 142 FILITN 147 (325)
T ss_pred EEEEcC
Confidence 777 65
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.0091 Score=59.13 Aligned_cols=134 Identities=7% Similarity=-0.049 Sum_probs=71.7
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccc--ccCCCeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYV--KNYFDCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
++++|-+.-.+.|...+..+. -....-++|+.|+||||+|+.+....-- ...+.. |-++- --+.+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p-C~~C~------~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP-CDTCI------QCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC-CcccH------HHHHHhhcCC
Confidence 568999999999999886553 3456678999999999999876554110 011100 00000 0000000000
Q ss_pred CCCC-CccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 96 PLSA-LSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
...- .........+++.+.+... ..+++-++|+|++... ++.+.+...+......+++|+ |.+.
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 0000 0000111233333333221 1245668899999755 567788887776666677777 7553
No 134
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.02 E-value=0.001 Score=56.31 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEE
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWV 77 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 77 (351)
+..+|.+.|+.|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4568999999999999999999988 66566555554
No 135
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0014 Score=56.79 Aligned_cols=81 Identities=9% Similarity=-0.010 Sum_probs=47.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHh
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNY 118 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (351)
+++.+|||-|.+|+||||+|+.+++. ++.++-.. ++.. +.-.-....-........-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~~~~--I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEKVVV--ISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCcceE--eecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 46789999999999999999999998 55442111 1111 0000111111111111111123567777788888888
Q ss_pred cCCceE
Q 048347 119 LKNKRY 124 (351)
Q Consensus 119 L~~k~~ 124 (351)
+.++..
T Consensus 81 ~~g~~v 86 (218)
T COG0572 81 KQGKPV 86 (218)
T ss_pred HcCCcc
Confidence 888774
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.00 E-value=0.0058 Score=63.47 Aligned_cols=116 Identities=5% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHH
Q 048347 17 NKVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLD 88 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~ 88 (351)
...++|-++.++.+.+.+... .....++-++|+.|+|||+||+.++.. .. ...+.++.+ +.-..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~---~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LG---VHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hc---CCeEEEeCchhhhcc---
Confidence 356789999999988887632 123456789999999999999999887 32 223444444 22211
Q ss_pred HHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcC
Q 048347 89 AIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALP 145 (351)
Q Consensus 89 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~ 145 (351)
.+.+-++.... .........+.+.++. ....+++||+++.. +.++.+...+.
T Consensus 525 ~~~~lig~~~g--yvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 525 TVSRLIGAPPG--YVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred cHHHHhcCCCC--CcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11122222111 0122222333443332 34469999999755 45666665544
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0083 Score=60.77 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|-+.-++.|...+..+. -...+-++|+.|+||||+|+.+...
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999987653 3455778999999999999876554
No 138
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.011 Score=59.44 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=42.7
Q ss_pred cccccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 5 SMIDNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 5 ~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+.||.-.+ ++++|.+.-.+.+.+++..+. -.+.+-++|+.|+||||+|+.+...
T Consensus 5 al~~k~rP~~f--~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 5 ALYRKWRPQTF--EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred HHHHHhCCCcH--HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555433 579999999999999997653 3455667999999999999887544
No 139
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.98 E-value=0.0038 Score=55.24 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHHc-------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 23 LEDKMEELLDLLIE-------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 23 r~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
||++.+.+.+-|.. ...+..+++|.|..|+|||||++.+...
T Consensus 8 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 8 RDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred ChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45555554444422 2356899999999999999999999877
No 140
>CHL00176 ftsH cell division protein; Validated
Probab=96.98 E-value=0.0035 Score=63.63 Aligned_cols=94 Identities=9% Similarity=0.092 Sum_probs=55.6
Q ss_pred CccccchhhHHHHHHHHH---ccC-------CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLI---ERQ-------PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMML 87 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 87 (351)
+++.|.++..+++.+.+. ... ...+-+.++|+.|.|||+||+.++.. .... |++++ ..++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is--~s~f~ 253 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSIS--GSEFV 253 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeecc--HHHHH
Confidence 457898888777766552 111 12345778999999999999999887 3222 33333 11111
Q ss_pred HHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 88 DAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
... .. .....+...+.....+..++++||+++.
T Consensus 254 ~~~----~g---------~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 254 EMF----VG---------VGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHh----hh---------hhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 100 00 0122334445555567889999999953
No 141
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.97 E-value=0.0028 Score=61.89 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.-+.|+|..|+|||.|++++.+. +.......-.+++ +..++...+...+.... ...+.+++.+++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv--~~~~f~~~~~~~l~~~~-----------~~~~~~~~~~~~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYM--SGDEFARKAVDILQKTH-----------KEIEQFKNEICQ 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEE--EHHHHHHHHHHHHHHhh-----------hHHHHHHHHhcc
Confidence 45779999999999999999986 4332222122222 44667777776654321 112344444543
Q ss_pred ceEEEEEeCCCCh---hh-HHHHHhhcCC-CCCCcEEEEEe
Q 048347 122 KRYLIVIQDVWRG---DI-WDFLKEALPD-HQNGSRILTAL 157 (351)
Q Consensus 122 k~~LlVLDdv~~~---~~-~~~l~~~l~~-~~~gs~IivTR 157 (351)
.-+|||||+... +. .+.+...+.. ...|..||+|.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlts 246 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSS 246 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 337888999543 22 2344444432 22344565543
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.96 E-value=0.0051 Score=64.82 Aligned_cols=118 Identities=9% Similarity=0.133 Sum_probs=64.5
Q ss_pred CccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDA 89 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~ 89 (351)
..++|.+.-++.+...+... +....++.++|+.|+|||++|+.+++. ....-...+.+..+ +.-...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~~~--- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEKHS--- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhhhh---
Confidence 45789999988888887532 122357889999999999999999876 32222233334433 322211
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcC
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALP 145 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~ 145 (351)
...+..... ..........+.+.++ ....-+++||++... +.+..+...+.
T Consensus 643 -~~~LiG~~p-gy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 643 -VSRLVGAPP-GYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred -HHHHhCCCC-cccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 222221111 0011111122222222 122358999999744 56666666554
No 143
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.95 E-value=0.0059 Score=54.10 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=39.4
Q ss_pred HHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC----CCeeEEEEEe--CCHHHHHHHHHHHh
Q 048347 32 DLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY----FDCCAWVYYQ--LSLDMMLDAIMKSL 94 (351)
Q Consensus 32 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~--~~~~~~~~~i~~~~ 94 (351)
++|..+-+.-.++.|+|.+|+|||+||.+++-....... -..++|++.. ++...+ .++++..
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 333333355689999999999999999999754222221 2567888766 554443 3344443
No 144
>PHA00729 NTP-binding motif containing protein
Probab=96.92 E-value=0.0027 Score=55.60 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..-|.|.|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999886
No 145
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0022 Score=57.64 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
+..=+.++|..|+|||.||.++.+. +...--.+.++ +..++++++....... .....+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~----~~~el~~~Lk~~~~~~------------~~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFI----TAPDLLSKLKAAFDEG------------RLEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEE----EHHHHHHHHHHHHhcC------------chHHHHHHHh
Confidence 4556778999999999999999999 54332234455 4457777776554431 1233344434
Q ss_pred CCceEEEEEeCCCCh
Q 048347 120 KNKRYLIVIQDVWRG 134 (351)
Q Consensus 120 ~~k~~LlVLDdv~~~ 134 (351)
++ -=||||||+-..
T Consensus 166 ~~-~dlLIiDDlG~~ 179 (254)
T COG1484 166 KK-VDLLIIDDIGYE 179 (254)
T ss_pred hc-CCEEEEecccCc
Confidence 33 347899999643
No 146
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.0047 Score=50.01 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
||.+.|+.|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999866
No 147
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.91 E-value=0.0052 Score=55.87 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
.+.+++.++|++|+||||++..+... ....-..+..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC
Confidence 34689999999999999999988766 33333345666655
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.90 E-value=0.0071 Score=63.64 Aligned_cols=118 Identities=10% Similarity=0.094 Sum_probs=65.1
Q ss_pred CccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDA 89 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~ 89 (351)
..++|-++-++.+.+.+... ......+-++|+.|+|||+||+.+.+. +-..-...+-+..+ |.-..-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc---
Confidence 66889999999998887531 122455668999999999999998765 32211223333344 221111
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCce-EEEEEeCCCCh--hhHHHHHhhcCC
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKR-YLIVIQDVWRG--DIWDFLKEALPD 146 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~~--~~~~~l~~~l~~ 146 (351)
+.+-++.+. ..........+ .+.++.++ .+++||+++.. +.++.+...+..
T Consensus 584 ~~~l~g~~~--gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 584 VSKLIGSPP--GYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred HHHhcCCCC--cccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 111122110 01112222233 33444444 58889999755 556666665543
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.01 Score=59.86 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=40.8
Q ss_pred ccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 8 DNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 8 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.||.-.+ ++++|.+.-++.|.+.+..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 8 ~k~RP~~f--~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 8 RKYRPQTF--SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHhCCCCH--HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44554433 578999999999999887652 2355678999999999999888665
No 150
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0073 Score=56.95 Aligned_cols=142 Identities=7% Similarity=-0.039 Sum_probs=77.5
Q ss_pred cCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC----CCeeEEEEEeCCHHHHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY----FDCCAWVYYQLSLDMMLD 88 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~ 88 (351)
++-+...++|-++-.+.+...+..+. -..-+-|+|+.|+||||+|..+... +-.+ +..... ......-...+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~~-~~~~~~c~~c~ 93 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPETL-ADPDPASPVWR 93 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcccc-CCCCCCCHHHH
Confidence 44456779999999999999887653 3345778999999999999887665 2110 111000 00000111223
Q ss_pred HHHHHhC-------CCCCCcc---CCCCCHHHHHHHHHHhc-----CCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCc
Q 048347 89 AIMKSLM-------PLSALSE---ILDNDFEMKKNTLHNYL-----KNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGS 151 (351)
Q Consensus 89 ~i~~~~~-------~~~~~~~---~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs 151 (351)
.|...-. .+..... ......+++. .+.+.+ .+++-++|+|+++.. ...+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 3322211 0000000 0112234433 333333 356678999999755 46677777776655556
Q ss_pred EEEE-Eeec
Q 048347 152 RILT-ALIH 159 (351)
Q Consensus 152 ~Iiv-TR~~ 159 (351)
.+|+ |...
T Consensus 173 ~fiLit~~~ 181 (351)
T PRK09112 173 LFILISHSS 181 (351)
T ss_pred eEEEEECCh
Confidence 6555 6443
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0093 Score=58.24 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=37.6
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
=++++|.+.-++.+.+++..+. -...+-++|+.|+||||+|+.+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999887642 2355678999999999999888654
No 152
>PTZ00301 uridine kinase; Provisional
Probab=96.87 E-value=0.0016 Score=56.81 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+|||.|.+|+||||||+.+...
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHH
Confidence 3679999999999999999998776
No 153
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.86 E-value=0.0074 Score=50.80 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+.|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999999999998876
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.85 E-value=0.0041 Score=60.56 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=46.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCe--eEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC--CAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
.-+.|+|..|+|||+||+++++. +...... ++|++ ..++..++...+... ..+ .+++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~----~~~f~~~~~~~~~~~---------~~~----~f~~~~ 191 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT----SEKFLNDLVDSMKEG---------KLN----EFREKY 191 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE----HHHHHHHHHHHHhcc---------cHH----HHHHHH
Confidence 34889999999999999999998 5544322 34443 445666665555322 112 233333
Q ss_pred CCceEEEEEeCCCC
Q 048347 120 KNKRYLIVIQDVWR 133 (351)
Q Consensus 120 ~~k~~LlVLDdv~~ 133 (351)
+.+.-+|++||+..
T Consensus 192 ~~~~dvLlIDDi~~ 205 (440)
T PRK14088 192 RKKVDVLLIDDVQF 205 (440)
T ss_pred HhcCCEEEEechhh
Confidence 33455889999964
No 155
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.85 E-value=0.015 Score=54.11 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=36.8
Q ss_pred chhhHHHHHHHHHccC-CCeEEEEEEcCCCChHHHHHHHHhCCcccccC
Q 048347 23 LEDKMEELLDLLIERQ-PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY 70 (351)
Q Consensus 23 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 70 (351)
|+...+.+.+.+.... +...+|+|.|.=|+|||++.+.+.+. .+..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~--L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE--LKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH--Hhcc
Confidence 3455677888887653 57899999999999999999999888 4444
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.0098 Score=60.73 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|-+.-++.|...+..+. -.+.+-++|+.|+||||+|+.+...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999997653 3455668999999999999888654
No 157
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.016 Score=54.97 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=37.4
Q ss_pred CCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
-...+++|.++-.+.+.+.+..+. -..-+-++|+.|+||+|+|..+..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 345679999999999999887653 234566899999999999977644
No 158
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.84 E-value=0.0051 Score=56.29 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CC--HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LS--LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
+.++++++|++|+||||++..+......+..-..+..|+.. +. ..+-+..-.+.+..+.. ...+..++.+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence 45799999999999999999988763222111244555554 22 22333333333333322 2234445555554
Q ss_pred HhcCCceEEEEEeC
Q 048347 117 NYLKNKRYLIVIQD 130 (351)
Q Consensus 117 ~~L~~k~~LlVLDd 130 (351)
+. .+. =++++|.
T Consensus 269 ~~-~~~-d~vliDt 280 (282)
T TIGR03499 269 RL-RDK-DLILIDT 280 (282)
T ss_pred Hc-cCC-CEEEEeC
Confidence 43 343 3666664
No 159
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.004 Score=58.91 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=51.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
+-.++.++|+.|+||||++.++......+.....+..++.. ....+-++..++.++.+.. ...+..++...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHHHH
Confidence 35799999999999999999998773222222345566655 3444555666666655433 2223333333333
Q ss_pred HhcCCceEEEEEeCCC
Q 048347 117 NYLKNKRYLIVIQDVW 132 (351)
Q Consensus 117 ~~L~~k~~LlVLDdv~ 132 (351)
.+.++ -++++|..-
T Consensus 212 -~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 -ELRNK-HMVLIDTIG 225 (374)
T ss_pred -HhcCC-CEEEEcCCC
Confidence 34454 455688774
No 160
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.81 E-value=0.0048 Score=59.50 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=44.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCe--eEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC--CAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
..+.|+|..|+|||.||+++++. +...... +++++ ..++...+...+... ..+ .+.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~----~~~~~~~~~~~~~~~---------~~~----~~~~~~ 197 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS----SEKFTNDFVNALRNN---------KME----EFKEKY 197 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE----HHHHHHHHHHHHHcC---------CHH----HHHHHH
Confidence 45789999999999999999998 5444322 33433 344555555554322 122 233333
Q ss_pred CCceEEEEEeCCCC
Q 048347 120 KNKRYLIVIQDVWR 133 (351)
Q Consensus 120 ~~k~~LlVLDdv~~ 133 (351)
++ .-+|+|||+..
T Consensus 198 ~~-~dlLiiDDi~~ 210 (405)
T TIGR00362 198 RS-VDLLLIDDIQF 210 (405)
T ss_pred Hh-CCEEEEehhhh
Confidence 33 23788999964
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.014 Score=58.60 Aligned_cols=131 Identities=8% Similarity=-0.009 Sum_probs=71.9
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC---CCeeEEEEEeCCHHHHHHHHHHHh
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY---FDCCAWVYYQLSLDMMLDAIMKSL 94 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~~~~~~~~~~~~i~~~~ 94 (351)
.+++|-+.-++.|..++..+. -.+.+-++|+.|+||||+|+.+......... +.|-. + .+ -+.|...-
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~--C--~~----C~~i~~~~ 86 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE--C--SS----CKSIDNDN 86 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc--c--hH----HHHHHcCC
Confidence 578999999999999997653 3456778999999999999998776221111 11100 0 00 01111000
Q ss_pred CCCCC-CccCCCCCHHHHHHHHHH----hcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 95 MPLSA-LSEILDNDFEMKKNTLHN----YLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 95 ~~~~~-~~~~~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
..... .........+++.+...+ -..+++-++|+|++... .+++.+...+........+|. |.
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 00000 000011233333332211 12356668899999755 467788877776555666665 53
No 162
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.0086 Score=57.52 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=58.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
++.|.|+-++||||+++.+... ..+. .+++... .+..++ .+....+.+.-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l----------------------~d~~~~~~~~~ 91 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL----------------------LDLLRAYIELK 91 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH----------------------HHHHHHHHHhh
Confidence 9999999999999999777766 3333 3444332 111111 11111111111
Q ss_pred CCceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccc
Q 048347 120 KNKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIV 161 (351)
Q Consensus 120 ~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v 161 (351)
..++..++||.|.....|......+.+.+.. ++++ +-+..+
T Consensus 92 ~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~l 133 (398)
T COG1373 92 EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSL 133 (398)
T ss_pred ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhh
Confidence 2277899999999999999999988877666 7777 544433
No 163
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.79 E-value=0.0052 Score=53.83 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=34.3
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
.|-.+|..+=+.-.++.|.|.+|+||||||.+++.. ....-..++|++..
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e 56 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTE 56 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECC
Confidence 344444333355689999999999999999998876 33333456677654
No 164
>PRK06526 transposase; Provisional
Probab=96.78 E-value=0.0024 Score=57.47 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-+.++|++|+|||+||..+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45789999999999999999776
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0074 Score=61.74 Aligned_cols=134 Identities=11% Similarity=0.152 Sum_probs=80.5
Q ss_pred CccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDA 89 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~ 89 (351)
..++|-|+-++.+.+.+... ...+...-..|+.|+|||-||+++..- +-+.=+..+-+.+| |.-+.-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHHHHHH
Confidence 55799999999998888532 234667778899999999999998766 32222344555555 443333332
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceE-EEEEeCCCCh--hhHHHHHhhcCCC----CCCc------EEEE-
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRY-LIVIQDVWRG--DIWDFLKEALPDH----QNGS------RILT- 155 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~--~~~~~l~~~l~~~----~~gs------~Iiv- 155 (351)
+ ++.+ +..+....... |-+.++++.| .+.||++... +-++-+...+.++ +.|- .|||
T Consensus 569 L---IGaP--PGYVGyeeGG~----LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 569 L---IGAP--PGYVGYEEGGQ----LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred H---hCCC--CCCceeccccc----hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 2 2222 11122333333 4445557777 7777999754 5666666665542 2333 4677
Q ss_pred Eeeccch
Q 048347 156 ALIHIVG 162 (351)
Q Consensus 156 TR~~~v~ 162 (351)
|.|-...
T Consensus 640 TSN~Gs~ 646 (786)
T COG0542 640 TSNAGSE 646 (786)
T ss_pred ecccchH
Confidence 8776653
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.76 E-value=0.0058 Score=58.63 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=39.0
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|.+.-.++.|.+..++++.+.+... -...+-+.++|+.|.|||++|+.+++.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3334455789999999988876421 023456779999999999999999988
No 167
>PRK08181 transposase; Validated
Probab=96.75 E-value=0.0035 Score=56.80 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=43.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.-+.++|+.|+|||.||..+.+. .......+.|+ +..+++..+..... ..+.....+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~----~~~~L~~~l~~a~~---------~~~~~~~l~----~l~- 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFT----RTTDLVQKLQVARR---------ELQLESAIA----KLD- 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeee----eHHHHHHHHHHHHh---------CCcHHHHHH----HHh-
Confidence 34789999999999999999876 43333334444 34566665543211 112222222 222
Q ss_pred ceEEEEEeCCCCh
Q 048347 122 KRYLIVIQDVWRG 134 (351)
Q Consensus 122 k~~LlVLDdv~~~ 134 (351)
+--||||||+...
T Consensus 167 ~~dLLIIDDlg~~ 179 (269)
T PRK08181 167 KFDLLILDDLAYV 179 (269)
T ss_pred cCCEEEEeccccc
Confidence 3348999999533
No 168
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.75 E-value=0.0088 Score=57.93 Aligned_cols=88 Identities=9% Similarity=-0.048 Sum_probs=50.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CC--HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LS--LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
+..+|.++|..|+||||+|..++.. .+..-..+.-|+.. +. ..+.++.++.++..+..... ...+...+.....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~-~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP-DNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC-CccCHHHHHHHHH
Confidence 4678999999999999999999876 43332234445554 33 34556667777655422110 1122223233333
Q ss_pred HhcCCceEEEEEeCC
Q 048347 117 NYLKNKRYLIVIQDV 131 (351)
Q Consensus 117 ~~L~~k~~LlVLDdv 131 (351)
+.+++. -++|+|-.
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333344 45777776
No 169
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.75 E-value=0.0059 Score=64.20 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=52.0
Q ss_pred ccccchhhHHHHHHHHHcc-CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeE---EEEEe-----CCHHHHHHH
Q 048347 19 VDLDLEDKMEELLDLLIER-QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCA---WVYYQ-----LSLDMMLDA 89 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~~~-----~~~~~~~~~ 89 (351)
.++||+.+.+.|...+..- ..+-.++.|.|..|||||+++++|... +...+...+ +-... ....+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999998888653 234569999999999999999999988 544422111 11111 445567777
Q ss_pred HHHHhC
Q 048347 90 IMKSLM 95 (351)
Q Consensus 90 i~~~~~ 95 (351)
++.++.
T Consensus 79 l~~~ll 84 (849)
T COG3899 79 LMGQLL 84 (849)
T ss_pred HHHHHh
Confidence 777773
No 170
>PRK09087 hypothetical protein; Validated
Probab=96.75 E-value=0.0072 Score=53.41 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.+.|||..|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998877
No 171
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.74 E-value=0.0016 Score=64.23 Aligned_cols=46 Identities=7% Similarity=0.196 Sum_probs=39.8
Q ss_pred ccccchhhHHHHHHHHHc----cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIE----RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++|.++.++++++.+.. -+.+-+++.++|+.|+|||+||+.+..-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 489999999999998833 2456689999999999999999999876
No 172
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0043 Score=61.03 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=63.5
Q ss_pred CccccchhhHHHHHHHHHcc---C-------CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER---Q-------PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMML 87 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~---~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 87 (351)
.++=|.|..+.++.+++..- + ...+=|-++|+.|.|||.||+++.+... -.| +.++ ..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf-----~~is--Ap--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPF-----LSIS--AP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cce-----Eeec--ch---
Confidence 34557999999988887531 1 1223466899999999999999999943 333 2222 11
Q ss_pred HHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh
Q 048347 88 DAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
+|. .++...+++.+.+.+.+.-..-.|++++|+++-.
T Consensus 258 -eiv---------SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 -EIV---------SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred -hhh---------cccCcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 111 1123446667777777777888999999999643
No 173
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.72 E-value=0.0031 Score=56.12 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCccccchh-hHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEE
Q 048347 17 NKVDLDLED-KMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYY 79 (351)
Q Consensus 17 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 79 (351)
++.++|-.. -...+.++.... ....+.|+|+.|+|||+||+.+++. ....-..+.++++
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~ 81 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPL 81 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEH
Confidence 445557322 233333433322 3357889999999999999999987 4333333445543
No 174
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0037 Score=64.61 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++||+++++++++.|...... -+.++|..|+|||++|+.++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~--n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKN--NPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCC--CeEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988775322 2347999999999999998865
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.019 Score=58.32 Aligned_cols=138 Identities=10% Similarity=-0.019 Sum_probs=72.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~ 97 (351)
.+++|.++-.+.|..++..+. -..-+-++|..|+||||+|+.+.............. .+...-+..+.+.......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~---~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP---EPCGKCELCRAIAAGNALD 91 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC---CCCcccHHHHHHhcCCCcc
Confidence 568999999999999887652 224556899999999999999876622111000000 0000001112221111110
Q ss_pred CC-CccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 98 SA-LSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
.. .........+++.+.+... ..+++-++|+|+++.. ++++.+...+........+|. |.+.
T Consensus 92 ~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 92 VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 00 0000112233333333211 1245568899999855 567888887776554555555 6443
No 176
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.70 E-value=0.007 Score=54.80 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=73.3
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEE-EEEe-CCHHHHHHHHHHHh
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAW-VYYQ-LSLDMMLDAIMKSL 94 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~-~~~~~~~~~i~~~~ 94 (351)
-++++|-+..++.|.+.+... .....-.+|+.|.|||+.|.......--.+.|.+.+- .+++ ..-..+.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~----- 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE----- 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh-----
Confidence 356889898899998888773 4677788999999999988777655333455666432 2222 000000000
Q ss_pred CCCCCCccCCCCCHHHHHHHHHHhc--CCce-EEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 95 MPLSALSEILDNDFEMKKNTLHNYL--KNKR-YLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~L--~~k~-~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
...+...+........ -.+. -.+|||+++.. ++|..++..+.+....++.+. +.
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 0000110000000000 0122 36788999866 789999999888776777665 54
No 177
>PRK08233 hypothetical protein; Provisional
Probab=96.70 E-value=0.0014 Score=55.52 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 579999999999999999999877
No 178
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0094 Score=56.51 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++|+++|.+|+||||++..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998765
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=96.69 E-value=0.0046 Score=55.83 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+.|+|+.|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999765
No 180
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.68 E-value=0.0077 Score=50.97 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHhcCCceEEEEEeC----CCChhhHHHHHhhcCCCCCCcEEEE-Eeeccc
Q 048347 104 LDNDFEMKKNTLHNYLKNKRYLIVIQD----VWRGDIWDFLKEALPDHQNGSRILT-ALIHIV 161 (351)
Q Consensus 104 ~~~~~~~~~~~l~~~L~~k~~LlVLDd----v~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v 161 (351)
+....++..-.+.+.+-++.-+++=|. ++..-.|+-+.-.-.-+..|..|++ |.+.++
T Consensus 137 ~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 445566667778888889998888874 4444566655433333556999999 998875
No 181
>PRK06620 hypothetical protein; Validated
Probab=96.67 E-value=0.0065 Score=53.22 Aligned_cols=23 Identities=13% Similarity=-0.114 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+-|||+.|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999998887
No 182
>PRK14974 cell division protein FtsY; Provisional
Probab=96.67 E-value=0.013 Score=54.72 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CC--HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LS--LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
+..++.++|+.|+||||++..++.. .+..=..++.+... +. ..+-++..+..++.+.............+.+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 3689999999999999988888765 33321123344433 22 2234555666665433211111111122233333
Q ss_pred HhcCCceEEEEEeCCCC
Q 048347 117 NYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 117 ~~L~~k~~LlVLDdv~~ 133 (351)
..-....-++++|-.-.
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 32222223778887743
No 183
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.66 E-value=0.0065 Score=56.70 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=30.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
.-+.++|..|+|||.||.++++. +...-..+++++ ..+++..+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t----~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRT----ADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEE----HHHHHHHHH
Confidence 56889999999999999999988 443333444543 344555443
No 184
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.65 E-value=0.0041 Score=58.19 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
+....++|||+.|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999999993
No 185
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.64 E-value=0.0017 Score=56.49 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++..+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999876
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.61 E-value=0.023 Score=47.42 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=68.0
Q ss_pred cchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCC-
Q 048347 22 DLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSAL- 100 (351)
Q Consensus 22 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~- 100 (351)
|-++..+.|.+.+..+. -...+-++|..|+||+++|..+....--...... .+ ..-...+.+......+...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---~c---~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNED---PC---GECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--------SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---CC---CCCHHHHHHHhccCcceEEE
Confidence 44566677777776542 2345678999999999998876543111111100 00 0000111111100000000
Q ss_pred -cc--CCCCCHHHHHHHHHHhc-----CCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 101 -SE--ILDNDFEMKKNTLHNYL-----KNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 101 -~~--~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
.. ......+++. .+.+.+ .++.-.+|+|+++.. +++..+...+.....++++|+ |++.+
T Consensus 74 ~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp ETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 00 0022344444 333333 245668899999865 688999999988877888888 87654
No 187
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.0076 Score=55.73 Aligned_cols=97 Identities=11% Similarity=0.191 Sum_probs=55.7
Q ss_pred cchhhHHHHHHHHHccC--CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCC
Q 048347 22 DLEDKMEELLDLLIERQ--PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSA 99 (351)
Q Consensus 22 Gr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~ 99 (351)
++..-.+...+++..-. +..+-+-++|..|+|||.||.++++. ....-..+.++++ .+++.++...+...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~----~~l~~~lk~~~~~~-- 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF----PEFIRELKNSISDG-- 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH----HHHHHHHHHHHhcC--
Confidence 34444444455554321 13456779999999999999999998 4333333455543 45666665444211
Q ss_pred CccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHH
Q 048347 100 LSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWD 138 (351)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~ 138 (351)
+.. +. .+.++ +-=+|||||+-.. .+|.
T Consensus 207 -------~~~---~~-l~~l~-~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 207 -------SVK---EK-IDAVK-EAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred -------cHH---HH-HHHhc-CCCEEEEecCCCccccHHH
Confidence 112 22 22333 4558899999533 4564
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.60 E-value=0.0052 Score=60.92 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCccccchhhHHHHHHHHH---c-------cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHH
Q 048347 17 NKVDLDLEDKMEELLDLLI---E-------RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMM 86 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 86 (351)
=++++|.++.++++.+++. . +....+=+-++|++|.|||++|+.++.. .... ++.++ ..++
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~--~~~~ 124 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSIS--GSDF 124 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeecc--HHHH
Confidence 3457898888777766553 1 1112233668999999999999999887 3222 22332 1122
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
.... .. .....+.+.+.......+++|+||+++.
T Consensus 125 ~~~~----~g---------~~~~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 125 VEMF----VG---------VGASRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred HHHH----hc---------ccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 1111 00 1222334444444456678999999954
No 189
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.60 E-value=0.0032 Score=53.49 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=41.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
..-+.++|..|+|||.||..+.+. .-.+=..+.|++ ..+++..+-. ... ........ +.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~----~~~L~~~l~~----~~~-----~~~~~~~~----~~l~ 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT----ASDLLDELKQ----SRS-----DGSYEELL----KRLK 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE----HHHHHHHHHC----CHC-----CTTHCHHH----HHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee----cCceeccccc----ccc-----ccchhhhc----Cccc
Confidence 355889999999999999999876 333323345554 4455555532 111 11222222 2333
Q ss_pred CceEEEEEeCCCCh
Q 048347 121 NKRYLIVIQDVWRG 134 (351)
Q Consensus 121 ~k~~LlVLDdv~~~ 134 (351)
+ -=||||||+-..
T Consensus 108 ~-~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 R-VDLLILDDLGYE 120 (178)
T ss_dssp T-SSCEEEETCTSS
T ss_pred c-ccEeccccccee
Confidence 3 346789999644
No 190
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0099 Score=57.68 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=34.4
Q ss_pred CccccchhhHH---HHHHHHHccC-------CCeEEEEEEcCCCChHHHHHHHHhCCccc
Q 048347 18 KVDLDLEDKME---ELLDLLIERQ-------PQLSLVAIIDTMGFDRTAFIGEAYNSSYV 67 (351)
Q Consensus 18 ~~~vGr~~~~~---~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 67 (351)
+++-|.|+.++ ++++.|.+.. +=.+=|-++|++|.|||.||++|.-...|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 34567776554 5556665432 11344668899999999999999998554
No 191
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.59 E-value=0.0019 Score=56.25 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999887
No 192
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.03 Score=51.95 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=72.0
Q ss_pred CccccchhhHHHHHHHHHcc---C--------CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER---Q--------PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMM 86 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~---~--------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 86 (351)
+++=|.++.+++|.+.+.-. + +..+=|-++|++|.|||.||++|+++ ....| +.+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvv------ 217 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVV------ 217 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEec------
Confidence 34557899999998887432 0 22344668999999999999999999 44443 3332
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc-CCceEEEEEeCCCCh-------------hh---HHHHHhhcCC--C
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL-KNKRYLIVIQDVWRG-------------DI---WDFLKEALPD--H 147 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~~--~ 147 (351)
-.++.+..-+.. ..+...+.+.- ++..+.+.+|.++.. +. +-++...+.. .
T Consensus 218 gSElVqKYiGEG----------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 218 GSELVQKYIGEG----------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred cHHHHHHHhccc----------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 111121211211 12333333333 356788999998633 11 1122333332 2
Q ss_pred CCCcEEEE-Eeeccc---hhhc
Q 048347 148 QNGSRILT-ALIHIV---GLSS 165 (351)
Q Consensus 148 ~~gs~Iiv-TR~~~v---~lL~ 165 (351)
...-|||. |...++ |+|+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLR 309 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLR 309 (406)
T ss_pred CCCeEEEEecCCccccChhhcC
Confidence 33568888 887777 6666
No 193
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.57 E-value=0.00083 Score=60.51 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
.-+|.+++|++|.|. +.. ..++..+++|..|+|++| .+.++...-.+|-+++.|.|.+ +.++.+ +++++|-+|.
T Consensus 304 KL~Pkir~L~lS~N~--i~~-v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L-SGL~KLYSLv 377 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNR--IRT-VQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETL-SGLRKLYSLV 377 (490)
T ss_pred hhccceeEEeccccc--eee-ehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhh-hhhHhhhhhe
Confidence 345677777774332 111 223566677777777776 3444443333444444555544 233333 2444444555
Q ss_pred EEEecCCChhH
Q 048347 319 KLESWWPRPEL 329 (351)
Q Consensus 319 ~L~l~~~~~~~ 329 (351)
.||+++.+.+-
T Consensus 378 nLDl~~N~Ie~ 388 (490)
T KOG1259|consen 378 NLDLSSNQIEE 388 (490)
T ss_pred eccccccchhh
Confidence 55554444333
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.012 Score=56.09 Aligned_cols=87 Identities=7% Similarity=0.036 Sum_probs=50.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccc--cCCCeeEEEEEe-CCHHH--HHHHHHHHhCCCCCCccCCCCCHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVK--NYFDCCAWVYYQ-LSLDM--MLDAIMKSLMPLSALSEILDNDFEMKKNT 114 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 114 (351)
+..+|.++|..|+||||.+..+....... .+-..+..++.. +.... -++..++.++.+.. ...+.+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 35799999999999999999887763222 122345566666 43333 34444544444322 22344555555
Q ss_pred HHHhcCCceEEEEEeCCC
Q 048347 115 LHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 115 l~~~L~~k~~LlVLDdv~ 132 (351)
+.+. ++.-++++|-.-
T Consensus 249 L~~~--~~~DlVLIDTaG 264 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIG 264 (388)
T ss_pred HHHh--CCCCEEEEcCCC
Confidence 5443 334567778774
No 195
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.56 E-value=0.0016 Score=51.60 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|+|.|+.|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999888
No 196
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.56 E-value=0.019 Score=48.76 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=62.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE---Ee-CCHHHHHHH------HHHHhCCCCCCcc-C-CCCCH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY---YQ-LSLDMMLDA------IMKSLMPLSALSE-I-LDNDF 108 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~-~~~~~~~~~------i~~~~~~~~~~~~-~-~~~~~ 108 (351)
-.+++|.|..|+|||||++.++.. ... ....+++. +. .+....... +++.++....... . .....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--LKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 468999999999999999999886 322 23333332 11 222222221 3444443221110 1 22233
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCh---hhHHHHHhhcCC-CCC-CcEEEE-Eeecc
Q 048347 109 EMKKNTLHNYLKNKRYLIVIQDVWRG---DIWDFLKEALPD-HQN-GSRILT-ALIHI 160 (351)
Q Consensus 109 ~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~-gs~Iiv-TR~~~ 160 (351)
+...-.+...+....-++++|+--.. +..+.+...+.. ... |..||+ |++..
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 33444556677777888999987533 233344443332 122 556666 77654
No 197
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.55 E-value=0.0079 Score=52.91 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|||.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999877
No 198
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.55 E-value=0.01 Score=61.82 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-+++.|.++.++++.+++... -...+-+.++|+.|+|||+||+.+++.
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 345789999999998887421 022345779999999999999999887
No 199
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.53 E-value=0.0078 Score=55.83 Aligned_cols=98 Identities=15% Similarity=0.013 Sum_probs=58.5
Q ss_pred HHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCC-ccC
Q 048347 28 EELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSAL-SEI 103 (351)
Q Consensus 28 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~-~~~ 103 (351)
..|-.+|- .+=++-+++-|+|++|+||||||-+++.. ....-..++||+.. ++. ..+++++.+... .-.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~ 113 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP-----VYAKKLGVDLDNLLIS 113 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH-----HHHHHcCCCHHHheec
Confidence 34444443 23356788999999999999999998776 33444567788765 333 234444432110 001
Q ss_pred CCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 104 LDNDFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 104 ~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
...+.+++.+.+...++. .--++|+|.+-
T Consensus 114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 114 QPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 233456666666555543 45688888873
No 200
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.53 E-value=0.0024 Score=60.87 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=52.1
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCC-cccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhc
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFP-RQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
.++++..|++ +++ .+..+|. ++ +|+.|.+++|.++..+|..+. .+|++|++.+|..+..+|+++..
T Consensus 50 ~~~~l~~L~I-s~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 50 EARASGRLYI-KDC-DIESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred HhcCCCEEEe-CCC-CCcccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence 3578999999 454 6777772 33 699999999989999996553 68999999999889999976443
No 201
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.52 E-value=0.0087 Score=51.64 Aligned_cols=112 Identities=6% Similarity=0.026 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCC
Q 048347 25 DKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEIL 104 (351)
Q Consensus 25 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~ 104 (351)
++..+.+..+.... -++..|.|.+|.||||+++.+... ....=..++++. ++-.. ...+......+..
T Consensus 4 ~~Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~a--pT~~A-a~~L~~~~~~~a~----- 71 (196)
T PF13604_consen 4 EEQREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLA--PTNKA-AKELREKTGIEAQ----- 71 (196)
T ss_dssp HHHHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEE--SSHHH-HHHHHHHHTS-EE-----
T ss_pred HHHHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEEC--CcHHH-HHHHHHhhCcchh-----
Confidence 34445555554433 356777999999999999998776 333311222222 22222 2223333332211
Q ss_pred CCCHHHHHHHHHHhc---------CCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE
Q 048347 105 DNDFEMKKNTLHNYL---------KNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT 155 (351)
Q Consensus 105 ~~~~~~~~~~l~~~L---------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 155 (351)
.+...+...- ..++-++|+|+.... .++..+....+. .|.++|.
T Consensus 72 -----Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klil 126 (196)
T PF13604_consen 72 -----TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLIL 126 (196)
T ss_dssp -----EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEE
T ss_pred -----hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEE
Confidence 0011111000 123448999999765 466666666655 4667765
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.0076 Score=53.57 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=25.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY 78 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 78 (351)
..+.|+|..|+|||.||+.+++. ....-..++|++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEee
Confidence 56789999999999999999876 333323445554
No 203
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.51 E-value=0.0063 Score=53.70 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=29.8
Q ss_pred cccchhhH-HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 20 DLDLEDKM-EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 20 ~vGr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|..+.. ..+.++.. .......+.|+|..|+|||+||+.+++.
T Consensus 21 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 21 VAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34554444 33444443 2223456789999999999999999987
No 204
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.51 E-value=0.006 Score=63.75 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=40.1
Q ss_pred CCccccchhhHHHHHHHHHc----cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 17 NKVDLDLEDKMEELLDLLIE----RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
+.+++|.++-++.+.+++.. ...+-.++.++|+.|+|||++|+.+.+. ....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe
Confidence 34578998888888886642 2223457889999999999999999988 54443
No 205
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.50 E-value=0.009 Score=55.39 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=59.3
Q ss_pred HHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCc-cC
Q 048347 28 EELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALS-EI 103 (351)
Q Consensus 28 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~-~~ 103 (351)
..|-.+|- .+=++-+++-|.|..|+||||||.++... ....-..++||+.. ++. ..+++++.+...- -.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~-----~~a~~lGvd~~~l~v~ 113 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP-----VYARKLGVDIDNLLVS 113 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH-----HHHHHcCCCHHHeEEe
Confidence 34444443 33366789999999999999999988776 33344556787655 332 2345554321100 01
Q ss_pred CCCCHHHHHHHHHHhcC-CceEEEEEeCCC
Q 048347 104 LDNDFEMKKNTLHNYLK-NKRYLIVIQDVW 132 (351)
Q Consensus 104 ~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~ 132 (351)
...+.++....+...++ +.--++|+|.+-
T Consensus 114 ~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 114 QPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred cCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 23345566666655554 355689999884
No 206
>PF14516 AAA_35: AAA-like domain
Probab=96.49 E-value=0.023 Score=53.28 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=74.4
Q ss_pred cCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-------CCHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-------LSLDM 85 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-------~~~~~ 85 (351)
.+.+...-|.|..--+++.+.|...+ ..+.|.|+-.+|||+|..++.+. .+..=..++++++. .+.++
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHH
Confidence 34455566788855566666665532 48889999999999999999888 44332334577666 34666
Q ss_pred HHHHHHHHhCCCCCCcc-------CCCCCHHHHHHHHHHhc---CCceEEEEEeCCCCh
Q 048347 86 MLDAIMKSLMPLSALSE-------ILDNDFEMKKNTLHNYL---KNKRYLIVIQDVWRG 134 (351)
Q Consensus 86 ~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~ 134 (351)
+++.++..+..+-.... ....+.......+.+.+ .+++.+++||+++..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 66666666655332110 11223444555555543 268999999999754
No 207
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.46 E-value=0.014 Score=56.27 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|.++|..|+||||+|..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999888765
No 208
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.011 Score=58.12 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|.+|+||||++.++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888765
No 209
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.45 E-value=0.021 Score=50.82 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=41.3
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
.|-++|..+=++-+++.|.|.+|+|||+||.++.... . ..-+.++||+..-+..++.+.+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeCCHHHHHHHHH
Confidence 3444454444567899999999999999998865441 2 23456788877666666666543
No 210
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.44 E-value=0.013 Score=51.87 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=59.3
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCC--------
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSAL-------- 100 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~-------- 100 (351)
.|-++|..+=++-+++.|+|..|+|||+||.++.... ++ +=..++|++..-+..++.+.+ .+++-....
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~~~~~~~~-~~~g~~~~~~~~~g~l~ 89 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTSKSYLKQM-ESVKIDISDFFLWGYLR 89 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCHHHHHHHH-HHCCCChhHHHhCCCce
Confidence 3444444443567889999999999999999985441 22 334677887764455555553 233221110
Q ss_pred ------cc--CCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 101 ------SE--ILDNDFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 101 ------~~--~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
.. ....+.+++.+.+.+.++. +.-++|+|.+-
T Consensus 90 i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 90 IFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred EEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00 0122345666666666653 44578888874
No 211
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0021 Score=55.21 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcc
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSY 66 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 66 (351)
..+|+|-||=|+||||||+.+.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 57899999999999999999999944
No 212
>PRK15453 phosphoribulokinase; Provisional
Probab=96.41 E-value=0.016 Score=52.53 Aligned_cols=80 Identities=15% Similarity=0.014 Sum_probs=46.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHHHhCCCCC--CccCCCCCHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSA--LSEILDNDFEMKKN 113 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~ 113 (351)
+..+|+|.|.+|+||||+|+.+... ....=...+.++.. ++..+.-..+...-..... ...++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 5679999999999999999998754 32211123444444 3444443333222221111 11146677777777
Q ss_pred HHHHhcCC
Q 048347 114 TLHNYLKN 121 (351)
Q Consensus 114 ~l~~~L~~ 121 (351)
.++...++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776553
No 213
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.023 Score=52.78 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|-++-++.+.+.+..+. -....-++|+.|+||+++|..+...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~ 49 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEG 49 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999887652 2367778999999999988776443
No 214
>PRK10867 signal recognition particle protein; Provisional
Probab=96.40 E-value=0.019 Score=55.60 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+|.++|..|+||||+|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999988777665
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.40 E-value=0.023 Score=49.83 Aligned_cols=118 Identities=12% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCCCccccchhhHHHHHHHHHc--cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHH
Q 048347 15 WDNKVDLDLEDKMEELLDLLIE--RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMK 92 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~ 92 (351)
++-..++|.|..++.+++--.. .+...-=|-+||--|.||+.|+|++.+. +.+..-. -|.|. .+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~--k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVD--KE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEc--HH--------
Confidence 4445689999888887653321 1222344668999999999999999998 6555444 23332 00
Q ss_pred HhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCC---ChhhHHHHHhhcCCC---CCCcEEEE-Eeec
Q 048347 93 SLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVW---RGDIWDFLKEALPDH---QNGSRILT-ALIH 159 (351)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~---~~gs~Iiv-TR~~ 159 (351)
+..+...+.+.++. +.+||.+..||+. ..+.+..++..+..+ .+...++. |.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11122223333322 3589999999995 335788888877642 23334444 5544
No 216
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0027 Score=52.11 Aligned_cols=91 Identities=10% Similarity=0.160 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEEEe---------CCHHHHHHH---HHHHhCC-CCCCcc--CC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVYYQ---------LSLDMMLDA---IMKSLMP-LSALSE--IL 104 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~---------~~~~~~~~~---i~~~~~~-~~~~~~--~~ 104 (351)
...|+|.||.|+||||+++.+.+. ++.. |...-+++-- |.+.++... ++..... ...... +.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~--L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK--LREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH--HHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 456889999999999999999988 4444 5554333211 333333210 0000000 000000 12
Q ss_pred CCCHH-HHHHHHHHhcCCceEEEEEeCCCCh
Q 048347 105 DNDFE-MKKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 105 ~~~~~-~~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
....+ -....+++.++. .=++|+|.+-..
T Consensus 83 v~~le~i~~~al~rA~~~-aDvIIIDEIGpM 112 (179)
T COG1618 83 VEGLEEIAIPALRRALEE-ADVIIIDEIGPM 112 (179)
T ss_pred HHHHHHHhHHHHHHHhhc-CCEEEEecccch
Confidence 22333 445667777766 347888999655
No 217
>PRK09354 recA recombinase A; Provisional
Probab=96.38 E-value=0.012 Score=55.02 Aligned_cols=99 Identities=16% Similarity=0.006 Sum_probs=60.9
Q ss_pred HHHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCC-cc
Q 048347 27 MEELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSAL-SE 102 (351)
Q Consensus 27 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~-~~ 102 (351)
...|-.+|- .+=++-+++-|+|+.|+||||||-++... ....-..++||..- ++. ..+++++.+... .-
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli 117 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLV 117 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEE
Confidence 334445554 33366789999999999999999998776 33444567788766 333 345555443110 00
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 103 ILDNDFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
....+.++....+...++. +--++|+|.|-
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1233456666666655543 45689999884
No 218
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.38 E-value=0.014 Score=58.57 Aligned_cols=73 Identities=10% Similarity=0.191 Sum_probs=44.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCC--eeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD--CCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
..+.|+|..|.|||.|++.+++. ....+. .+.++ +..++..++...+... . .+.+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yi----taeef~~el~~al~~~---------~----~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYV----SSEEFTNEFINSIRDG---------K----GDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEe----eHHHHHHHHHHHHHhc---------c----HHHHHHHh
Confidence 34789999999999999999998 444322 22343 3455555555444321 1 22333444
Q ss_pred CCceEEEEEeCCCCh
Q 048347 120 KNKRYLIVIQDVWRG 134 (351)
Q Consensus 120 ~~k~~LlVLDdv~~~ 134 (351)
++- =+|+|||+...
T Consensus 376 ~~~-DLLlIDDIq~l 389 (617)
T PRK14086 376 REM-DILLVDDIQFL 389 (617)
T ss_pred hcC-CEEEEehhccc
Confidence 433 47888999644
No 219
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.37 E-value=0.0074 Score=52.17 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=52.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.+|.|.|+.|.||||+++.+... ...+....++.--. ..+..... ...+..+.. ...+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~-~~E~~~~~-~~~~i~q~~----vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIED-PIEFVHES-KRSLINQRE----VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcC-CccccccC-ccceeeecc----cCCCccCHHHHHHHHhcC
Confidence 36889999999999999988776 44444433332211 11111000 000000000 011223456677888877
Q ss_pred ceEEEEEeCCCChhhHHHHHhh
Q 048347 122 KRYLIVIQDVWRGDIWDFLKEA 143 (351)
Q Consensus 122 k~~LlVLDdv~~~~~~~~l~~~ 143 (351)
..=.+++|++.+.+........
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~ 95 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA 95 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH
Confidence 7779999999877665554443
No 220
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.023 Score=59.04 Aligned_cols=131 Identities=8% Similarity=0.067 Sum_probs=77.6
Q ss_pred CccccchhhHHHHHHHHHcc------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
+.++|-++-+..+...+... ......+-+.|+.|+|||-||+++..- +-+..+..+-++++ ++.. +.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDms----e~~e-vs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMS----EFQE-VS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechh----hhhh-hh
Confidence 45678788888877777542 124677888999999999999998777 54444444444443 2222 44
Q ss_pred HHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEE-EEEeCCCCh--hhHHHHHhhcCC----C------CCCcEEEE-Ee
Q 048347 92 KSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYL-IVIQDVWRG--DIWDFLKEALPD----H------QNGSRILT-AL 157 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L-lVLDdv~~~--~~~~~l~~~l~~----~------~~gs~Iiv-TR 157 (351)
+-++.+.. .-..+....+.+.++.+.|- ++||||+.. +....+...+.. . ..+..|+| |.
T Consensus 635 kligsp~g------yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 635 KLIGSPPG------YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred hccCCCcc------cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 44444321 11222344677777787764 455999765 334433343322 1 22456888 87
Q ss_pred eccc
Q 048347 158 IHIV 161 (351)
Q Consensus 158 ~~~v 161 (351)
+-.-
T Consensus 709 n~~~ 712 (898)
T KOG1051|consen 709 NVGS 712 (898)
T ss_pred ccch
Confidence 6543
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.019 Score=55.55 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
-+++.++|++|+||||++..+.........-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3689999999999999988886652211222345555554
No 222
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.35 E-value=0.0055 Score=49.22 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccc
Q 048347 25 DKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYV 67 (351)
Q Consensus 25 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 67 (351)
++.+++-+.+...-+.-.+|.+.|.-|+|||||++.+.....+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4445555555433233468999999999999999999887443
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.35 E-value=0.019 Score=47.07 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=27.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
++.|.|..|+||||+|..+... ....-..++|++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECC
Confidence 3678999999999999999887 44444456677665
No 224
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.016 Score=54.64 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CC--HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LS--LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
+.+++.++|+.|+||||++..+... ....-..+.+|+.. +- ..+-++..++.+..+.. ...+..++.+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHHH
Confidence 4689999999999999999998765 32222345667665 32 24445555554443322 2234555555554
Q ss_pred Hhc-CCceEEEEEeCCC
Q 048347 117 NYL-KNKRYLIVIQDVW 132 (351)
Q Consensus 117 ~~L-~~k~~LlVLDdv~ 132 (351)
..- .+..=++++|-.-
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 332 1333466677664
No 225
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.021 Score=54.73 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++.++|++|+||||+|.++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999865
No 226
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.30 E-value=0.021 Score=59.16 Aligned_cols=115 Identities=6% Similarity=0.096 Sum_probs=64.8
Q ss_pred CccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDA 89 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~ 89 (351)
..++|-++-++.+.+.+... ......+-++|+.|+|||++|+.+... .... .+.++.+ +........
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERHTVSR 532 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhcccccHHH
Confidence 45789999999998888631 223456788999999999999999887 3222 2334444 322111111
Q ss_pred HHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcC
Q 048347 90 IMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALP 145 (351)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~ 145 (351)
+ ++.+.. .........+.+.++ +....+++||+++.. +.++.+...+.
T Consensus 533 L---iG~~~g--yvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 533 L---IGAPPG--YVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred H---cCCCCC--cccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1 222110 011111122233332 234468999999866 45666655543
No 227
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.30 E-value=0.0093 Score=56.93 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCccccchhhHHHHHHHHHcc------------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC---CeeEEEEEe-
Q 048347 17 NKVDLDLEDKMEELLDLLIER------------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF---DCCAWVYYQ- 80 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~- 80 (351)
+.+++|.++.++.+.-.+... +...+-|-++|+.|+|||++|+.+... ....| +...+...+
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCc
Confidence 467899999999987666532 112256778999999999999999888 44444 222222222
Q ss_pred --CCHHHHHHHHHHHh
Q 048347 81 --LSLDMMLDAIMKSL 94 (351)
Q Consensus 81 --~~~~~~~~~i~~~~ 94 (351)
.+.+++++.+....
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 46777777776655
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0054 Score=62.70 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-+.++|||++++++++.|....++-.|+ +|.+|+|||++|.-++.+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvL--iGEpGVGKTAIvEGLA~r 214 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVL--VGEPGVGKTAIVEGLAQR 214 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeE--ecCCCCCHHHHHHHHHHH
Confidence 34568999999999999998876555555 699999999976655544
No 229
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.27 E-value=0.0089 Score=57.09 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=52.5
Q ss_pred CCccccchhhHHHHHHHHHcc--------C----CCeEEEEEEcCCCChHHHHHHHHhCCcccccCC---CeeEEEEEe-
Q 048347 17 NKVDLDLEDKMEELLDLLIER--------Q----PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF---DCCAWVYYQ- 80 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~- 80 (351)
+..++|.++.++.+...+... . ...+-+.++|+.|+|||++|+.+... ....| +...|...+
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 567999999999998888541 1 11256789999999999999999887 44444 222233222
Q ss_pred --CCHHHHHHHHHHHh
Q 048347 81 --LSLDMMLDAIMKSL 94 (351)
Q Consensus 81 --~~~~~~~~~i~~~~ 94 (351)
.+.+++++.+....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 56677777776666
No 230
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.019 Score=59.01 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=34.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CC--HHHHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LS--LDMMLDAIMKSLMP 96 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~--~~~~~~~i~~~~~~ 96 (351)
-+|++++|+.|+||||++.++.........-..+..++.. +. ..+-++...+.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gv 243 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGV 243 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCC
Confidence 4799999999999999999988763222222244455444 22 33445555555543
No 231
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.022 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++++|..|+||||+++.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999877654
No 232
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.026 Score=51.21 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHH---HH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALSEILDNDFEMK---KN 113 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~ 113 (351)
++-+++-|+|+.|.||||+|-+++-. ....-..++|++.- ++++.+.+ ++.....+.... ...+.++. .+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~--~~~~~e~q~~i~~ 132 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVS--QPDTGEQQLEIAE 132 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEe--cCCCHHHHHHHHH
Confidence 67799999999999999999998877 55555578899877 66665443 444421111111 22233333 33
Q ss_pred HHHHhcCCceEEEEEeCCC
Q 048347 114 TLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 114 ~l~~~L~~k~~LlVLDdv~ 132 (351)
.+.+....+--|+|+|.+-
T Consensus 133 ~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHhccCCCCEEEEecCc
Confidence 3444434445688888873
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.24 E-value=0.014 Score=49.05 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=42.9
Q ss_pred cccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHH
Q 048347 20 DLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMK 92 (351)
Q Consensus 20 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~ 92 (351)
+||.+....++++.+..-...-.-|-|+|..|+||+.+|+.+++... .. ..-||.+. ++.+.+-.++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~--~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP--RK--NGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST--TT--TS-EEEEETTTS-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh--cc--cCCeEEEehhhhhcchhhhhhhc
Confidence 57888888888887765322223455999999999999999999722 22 12455555 555555555543
No 234
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.01 Score=57.80 Aligned_cols=73 Identities=10% Similarity=0.192 Sum_probs=44.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.-+.|+|+.|+|||+||+.+.+. +......++++ +..++...+...+... . .+.++..+++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi----~~~~f~~~~~~~l~~~---------~----~~~f~~~~~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYV----RSELFTEHLVSAIRSG---------E----MQRFRQFYRN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEe----eHHHHHHHHHHHHhcc---------h----HHHHHHHccc
Confidence 45779999999999999999998 44332223343 3344555555444321 1 2234444444
Q ss_pred ceEEEEEeCCCCh
Q 048347 122 KRYLIVIQDVWRG 134 (351)
Q Consensus 122 k~~LlVLDdv~~~ 134 (351)
. -++++||+...
T Consensus 203 ~-dvLiIDDiq~l 214 (445)
T PRK12422 203 V-DALFIEDIEVF 214 (445)
T ss_pred C-CEEEEcchhhh
Confidence 3 47888998543
No 235
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.23 E-value=0.0043 Score=57.30 Aligned_cols=88 Identities=22% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCC-CCceEEEEecccccCc---eeeeCCCCCCcccEEEEecCCccc-----cccccccccCCccEEeecCCccc----
Q 048347 238 PEKL-PHLKVLKLKRSSYSGR---KLVCGHGGFPRQEILHLKSMLWLE-----EWKMETGAMQKLKSLIVNPCAYL---- 304 (351)
Q Consensus 238 l~~l-~~L~~L~l~~~~~~~~---~lp~~~~~l~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~c~~l---- 304 (351)
+..+ ++|+.|+++.+..... .++..+..+++|++|++++| .+. .++..+..+++|+.|++++|..-
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 3455 8899999954443321 23444556678999999998 454 34444556679999999987421
Q ss_pred cccChhhhcCCCCCEEEecCCC
Q 048347 305 RKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 305 ~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
..++..+.++++|++|++++++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCc
Confidence 3455566778899999999876
No 236
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.22 E-value=0.0038 Score=53.12 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.|.|+.|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999866
No 237
>PRK06547 hypothetical protein; Provisional
Probab=96.22 E-value=0.004 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|..|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999876
No 238
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.20 E-value=0.11 Score=47.09 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=68.1
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCC--CCCC-cc
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMP--LSAL-SE 102 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~--~~~~-~~ 102 (351)
.+.++..+... .+..-++|+|..|.|||||.+.+... ++.. ...+++.-. ....+-.++++..+.. +... ..
T Consensus 98 ~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~~~-~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 98 ADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LSTG-ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cCCC-CceEEECCEEeecchhHHHHHHHhccccccccccc
Confidence 34444445433 23567899999999999999999988 4433 223333211 1111112344433221 1110 00
Q ss_pred CCCCCHHHHHHHHHHhcC-CceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccc
Q 048347 103 ILDNDFEMKKNTLHNYLK-NKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIV 161 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v 161 (351)
.+..+.....+.+...++ ...-++++|..-..+.+..+...+. .|..+|+ |.+..+
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 111111111222333333 4777899999987777777766653 3677777 876554
No 239
>PRK06762 hypothetical protein; Provisional
Probab=96.20 E-value=0.0034 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999999887
No 240
>PRK06921 hypothetical protein; Provisional
Probab=96.20 E-value=0.0084 Score=54.33 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEE
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVY 78 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~ 78 (351)
..-+.++|..|+|||.||.++++. +... -..+++++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEE
Confidence 456889999999999999999998 5443 33345554
No 241
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.18 E-value=0.012 Score=53.05 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=44.4
Q ss_pred ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHH
Q 048347 36 ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMK 92 (351)
Q Consensus 36 ~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~ 92 (351)
.+=++-+++.|.|..|+|||++|.+.... ...+.+.++||+..-+.+++.....+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCHHHHHHHHHH
Confidence 33366789999999999999999999888 66678899999988666666666653
No 242
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.18 E-value=0.0064 Score=62.94 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=23.9
Q ss_pred ccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecCC
Q 048347 269 QEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWP 325 (351)
Q Consensus 269 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 325 (351)
|+.|+|++| .+..+|..+. .+|+.|++++ ..+..+|..+. .+|+.|+++++
T Consensus 243 L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 243 IQEMELSIN-RITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred ccEEECcCC-ccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC
Confidence 444444444 3334443332 2455555553 34555555442 35666666554
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.011 Score=59.09 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=52.4
Q ss_pred CCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHH
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIM 91 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~ 91 (351)
.+.+++-.-...++..+.....-.+..-|-|.|..|+|||+||+++++... ++..-.+..|+.+ ...+.+++.+
T Consensus 406 ~e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l- 483 (952)
T KOG0735|consen 406 FEHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL- 483 (952)
T ss_pred CCCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-
Confidence 344444433333333332222222344577899999999999999999833 2222223344433 2222222222
Q ss_pred HHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 048347 92 KSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
...+.+.+.-..-++||||++
T Consensus 484 --------------------~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 484 --------------------NNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred --------------------HHHHHHHHhhCCcEEEEcchh
Confidence 223334445678899999995
No 244
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.17 E-value=0.0035 Score=44.24 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999998877
No 245
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.16 E-value=0.033 Score=53.85 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++.++|..|+||||+|..++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 578999999999999998887766
No 246
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.054 Score=50.74 Aligned_cols=127 Identities=9% Similarity=0.049 Sum_probs=67.3
Q ss_pred cccc-chhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccc---cCCCe-----eEEEEEe--CCHHHHH
Q 048347 19 VDLD-LEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVK---NYFDC-----CAWVYYQ--LSLDMML 87 (351)
Q Consensus 19 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~-----~~wv~~~--~~~~~~~ 87 (351)
.++| -+.-.+.+.+.+..+. -....-++|+.|+||||+|+.+....--. ..-.| |..+... +++..+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i- 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV- 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe-
Confidence 4566 5666677777775442 34566789999999999998874431100 10000 0000000 000000
Q ss_pred HHHHHHhCCCCCCccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 88 DAIMKSLMPLSALSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 88 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
... . .....+++.+.+... ..+.+-++|+|+++.. ++.+.+...+.+...++.+|. |.+.
T Consensus 84 -------~~~-~----~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 84 -------APD-G----QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred -------ccc-c----ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 000 0 112233333322211 2345567889998755 567788888887777777777 7544
No 247
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.15 E-value=0.017 Score=51.94 Aligned_cols=79 Identities=18% Similarity=0.032 Sum_probs=45.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHHHhCCCCCCc--cCCCCCHHHHHHHHH
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSALS--EILDNDFEMKKNTLH 116 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~l~ 116 (351)
+|+|.|.+|+||||+|+++... .+..=...+.++.. ++..+.-..+........... .++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988776 33221223444433 233333333333222211111 135667777777777
Q ss_pred HhcCCce
Q 048347 117 NYLKNKR 123 (351)
Q Consensus 117 ~~L~~k~ 123 (351)
..-+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776654
No 248
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.15 E-value=0.019 Score=59.86 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=40.4
Q ss_pred CCCccccchhhHHHHHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-+.+.+|.++-++.+++++... ..+..++.++|+.|+||||+|+.+...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999888632 234568999999999999999999876
No 249
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.022 Score=51.01 Aligned_cols=93 Identities=5% Similarity=-0.095 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE--Ee----CCHHHHHHHHHHHhCCCCCCc--cC-CCCCHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY--YQ----LSLDMMLDAIMKSLMPLSALS--EI-LDNDFEM 110 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--~~----~~~~~~~~~i~~~~~~~~~~~--~~-~~~~~~~ 110 (351)
+-.++|++|.+|.||||+|+.+..- .+...-.+.|-- +. ....+...+++...+...... .+ +....+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L--~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL--EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC--cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 4568999999999999999999887 443333333321 11 223345566666666433210 11 2333444
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCh
Q 048347 111 KKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 111 ~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
..-.+.+.|.-+.-++|.|.--+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhh
Confidence 455678888899999999987544
No 250
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.13 E-value=0.02 Score=53.18 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=34.9
Q ss_pred CCCCcccc---chhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHH
Q 048347 15 WDNKVDLD---LEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEA 61 (351)
Q Consensus 15 ~~~~~~vG---r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v 61 (351)
..+.++.| |..+..--..+|++++ +..|.+.|.+|.|||.||-+.
T Consensus 218 ~~~~~vwGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 218 HEDQEVWGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cCchhhhccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 34556666 6667777788887764 889999999999999988553
No 251
>PRK05439 pantothenate kinase; Provisional
Probab=96.13 E-value=0.03 Score=51.68 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccC--CCeeEEEEEe--CCHHHHHHHHHHHhCC-CCCCccCCCCCHHHHHH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY--FDCCAWVYYQ--LSLDMMLDAIMKSLMP-LSALSEILDNDFEMKKN 113 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~--~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 113 (351)
...-+|||.|..|+||||+|+.+... .... -..+.-++.. +...+.+.. ..+.. .+. ++.-+.+.+.+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~---Pes~D~~~l~~ 156 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGF---PESYDMRALLR 156 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCC---cccccHHHHHH
Confidence 46789999999999999999998775 3322 1223334444 222222221 11111 111 24567777777
Q ss_pred HHHHhcCCce
Q 048347 114 TLHNYLKNKR 123 (351)
Q Consensus 114 ~l~~~L~~k~ 123 (351)
.+.....++.
T Consensus 157 ~L~~Lk~G~~ 166 (311)
T PRK05439 157 FLSDVKSGKP 166 (311)
T ss_pred HHHHHHcCCC
Confidence 7777776664
No 252
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.13 E-value=0.031 Score=53.10 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=55.0
Q ss_pred HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCcc-CCCC
Q 048347 28 EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSE-ILDN 106 (351)
Q Consensus 28 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 106 (351)
.++-..|-.+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..-...++ +.-++.++....... ....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~~qi-~~Ra~rlg~~~~~l~l~~e~ 145 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESPEQI-KLRADRLGISTENLYLLAET 145 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCHHHH-HHHHHHcCCCcccEEEEccC
Confidence 3444444333244578999999999999999998876 43333456666544233332 222344443221100 1233
Q ss_pred CHHHHHHHHHHhcCCceEEEEEeCCC
Q 048347 107 DFEMKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 107 ~~~~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
+.+.+.+.+.+ .+.-++|+|.+.
T Consensus 146 ~le~I~~~i~~---~~~~lVVIDSIq 168 (372)
T cd01121 146 NLEDILASIEE---LKPDLVIIDSIQ 168 (372)
T ss_pred cHHHHHHHHHh---cCCcEEEEcchH
Confidence 44555554432 355678999873
No 253
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.12 E-value=0.016 Score=50.57 Aligned_cols=46 Identities=20% Similarity=0.067 Sum_probs=35.2
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.++||-++..+.+.-...+++ +.=+.|.||+|+||||-+..+.+.
T Consensus 26 l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHH
Confidence 4578999999998887776654 556678899999999965555444
No 254
>PRK03839 putative kinase; Provisional
Probab=96.12 E-value=0.0035 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|.|+.|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999988
No 255
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.10 E-value=0.0034 Score=54.17 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|..|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999776
No 256
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.08 E-value=0.0012 Score=67.61 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCCceEEEEecccccCceeeeCCC-CCCcccEEEEecCCccc-cccccccccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCGHG-GFPRQEILHLKSMLWLE-EWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
-.+|++|++++........|..++ -||+|+.|.++|-.... ++-.--.++++|..||+++ +++..+ .+|++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHH
Confidence 367899999655555556666555 57999999999864322 3333456899999999999 788888 8999999999
Q ss_pred EEEecCCChhH
Q 048347 319 KLESWWPRPEL 329 (351)
Q Consensus 319 ~L~l~~~~~~~ 329 (351)
.|.+++..-+-
T Consensus 199 ~L~mrnLe~e~ 209 (699)
T KOG3665|consen 199 VLSMRNLEFES 209 (699)
T ss_pred HHhccCCCCCc
Confidence 99999987443
No 257
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0062 Score=61.06 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCCccccchhhHHHHHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
+-+.+-.|.++-++++++.|.-. .-+-.+++.||++|+|||.|++.++.- ....|
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf 378 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF 378 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE
Confidence 34567799999999999988532 334579999999999999999999988 55554
No 258
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.08 E-value=0.077 Score=48.05 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
.-.++.|.|.+|+||||+|.++... .... =..++|++..-...++...+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEcccCHHHHHHHHHHHHh
Confidence 3457888999999999999998776 3222 3456787766555666666655543
No 259
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.011 Score=53.91 Aligned_cols=81 Identities=7% Similarity=0.098 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccc--CCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHh
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKN--YFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNY 118 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (351)
-++|-++|++|.|||+|+|+++.+..++. .|....-+.++ -..++..=.. .. ..-...+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin--shsLFSKWFs---ES-------gKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN--SHSLFSKWFS---ES-------GKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe--hhHHHHHHHh---hh-------hhHHHHHHHHHHHH
Confidence 47899999999999999999999855543 34444444443 2233322221 11 12345667777777
Q ss_pred cCCceEE--EEEeCCCC
Q 048347 119 LKNKRYL--IVIQDVWR 133 (351)
Q Consensus 119 L~~k~~L--lVLDdv~~ 133 (351)
++++..| +.+|.|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 7776654 45688843
No 260
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.07 E-value=0.0034 Score=58.03 Aligned_cols=84 Identities=26% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCceEEEEecccccCc---eeeeCCCCC-CcccEEEEecCCccc-----cccccccccCCccEEeecCCccc----cccC
Q 048347 242 PHLKVLKLKRSSYSGR---KLVCGHGGF-PRQEILHLKSMLWLE-----EWKMETGAMQKLKSLIVNPCAYL----RKFP 308 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~---~lp~~~~~l-~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~c~~l----~~lP 308 (351)
++|++|+++.+..... .+...+..+ ++|+.|++++|. +. .++..+..+.+|++|++++|..- ..++
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 5599999954433211 223345566 889999999994 44 34545667788999999986432 2455
Q ss_pred hhhhcCCCCCEEEecCCC
Q 048347 309 EELWRIKALRKLESWWPR 326 (351)
Q Consensus 309 ~~i~~L~~L~~L~l~~~~ 326 (351)
..+..+++|++|+++++.
T Consensus 187 ~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 187 EGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHhCCCCCEEeccCCc
Confidence 566677899999999875
No 261
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.07 E-value=0.0069 Score=58.89 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=37.7
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...++|+++.++.+...+..+. -|-+.|++|+|||++|+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 4678999999999998887764 3557899999999999999886
No 262
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.019 Score=51.16 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=65.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcc-----cc------cCC---CeeEEEEE----e----CCHH--------------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSY-----VK------NYF---DCCAWVYY----Q----LSLD-------------- 84 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~----~----~~~~-------------- 84 (351)
-.+++|+|+.|+|||||.|.+..-.+ ++ ..+ ..+.||.- . .++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999977311 11 001 12334321 0 2222
Q ss_pred --------HHHHHHHHHhCCCCC-CccCCCC-CHHHHHHHHHHhcCCceEEEEEeCCCCh------hhHHHHHhhcCCCC
Q 048347 85 --------MMLDAIMKSLMPLSA-LSEILDN-DFEMKKNTLHNYLKNKRYLIVIQDVWRG------DIWDFLKEALPDHQ 148 (351)
Q Consensus 85 --------~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~ 148 (351)
+...+.++..+...- ..++... ..+...-.+.+.|..+.=|++||.=-.. .+.-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 233333333333211 1123333 3444566778999999999999965322 2222233333322
Q ss_pred CCcEEEE-Eeeccc
Q 048347 149 NGSRILT-ALIHIV 161 (351)
Q Consensus 149 ~gs~Iiv-TR~~~v 161 (351)
|..|++ |.|-+.
T Consensus 189 -g~tIl~vtHDL~~ 201 (254)
T COG1121 189 -GKTVLMVTHDLGL 201 (254)
T ss_pred -CCEEEEEeCCcHH
Confidence 778888 887654
No 263
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0067 Score=49.84 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~ 97 (351)
+|.|-|.+|.||||+|+.+.++...+. | +.-.++++|+++.+-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------V----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------e----eccHHHHHHHHHcCCC
Confidence 688999999999999999999833221 1 2337888888877664
No 264
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.006 Score=54.71 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=39.2
Q ss_pred CCCccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCCcc
Q 048347 16 DNKVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNSSY 66 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 66 (351)
.-.++||-++-++++.-.+... +...-=+-++|++|.||||||.-+.+...
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg 77 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG 77 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc
Confidence 3467899888888887766542 23345577899999999999999999843
No 265
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.03 E-value=0.0056 Score=53.26 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 34 LIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 34 L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+..+.+++.|+|++|+|||||++.+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3444556788999999999999999999765
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.03 E-value=0.053 Score=56.50 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=56.8
Q ss_pred CCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHH
Q 048347 16 DNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLD 84 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 84 (351)
.-.++.|.+.-+++|.+.+... -...+-+-++|+.|.|||++|+++.+. ....| +.+. ..
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~--~~ 521 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVR--GP 521 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEe--hH
Confidence 3455778888888887776421 112334678999999999999999998 43333 3332 11
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 048347 85 MMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
+++ .... ..++..+.+.+...-....+++++|+++
T Consensus 522 ~l~----~~~v---------Gese~~i~~~f~~A~~~~p~iifiDEid 556 (733)
T TIGR01243 522 EIL----SKWV---------GESEKAIREIFRKARQAAPAIIFFDEID 556 (733)
T ss_pred HHh----hccc---------CcHHHHHHHHHHHHHhcCCEEEEEEChh
Confidence 111 1111 1122333444444445677999999985
No 267
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.03 E-value=0.057 Score=47.61 Aligned_cols=57 Identities=21% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHH
Q 048347 30 LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLD 88 (351)
Q Consensus 30 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 88 (351)
|-++|..+=++-.++.|.|.+|+||||||.++... .-..-+.++|++..-..+++..
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~~~~i~~ 65 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEESRESIIR 65 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCCHHHHHH
Confidence 33444333345689999999999999999987654 2123345677765544444443
No 268
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.02 E-value=0.014 Score=60.46 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=59.1
Q ss_pred CCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEE
Q 048347 242 PHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLE 321 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~ 321 (351)
++|+.|+++.+ .+..+|..+ +.+|++|++++| .+..+|..+. .+|+.|+|++| .+..+|.++. ++|+.|+
T Consensus 199 ~~L~~L~Ls~N--~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNN--ELKSLPENL--QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCC--CCCcCChhh--ccCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEE
Confidence 57999999433 455777654 368999999999 6889997654 58999999986 5789998875 5899999
Q ss_pred ecCCC
Q 048347 322 SWWPR 326 (351)
Q Consensus 322 l~~~~ 326 (351)
+++..
T Consensus 269 Ls~N~ 273 (754)
T PRK15370 269 LFHNK 273 (754)
T ss_pred CcCCc
Confidence 98754
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.01 E-value=0.0047 Score=54.96 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD 72 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 72 (351)
++...|.++||+|.||||+.++++.+ ....+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ 48 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKT 48 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccC
Confidence 45567778899999999999999988 444443
No 270
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.01 E-value=0.013 Score=59.35 Aligned_cols=75 Identities=7% Similarity=-0.074 Sum_probs=54.6
Q ss_pred CCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEEEe-CCHHHHHHHHHHH
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVYYQ-LSLDMMLDAIMKS 93 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~-~~~~~~~~~i~~~ 93 (351)
--++++|.++-.+.+...+.... -+.++|+.|+||||+|+.+.+. +... |...+++..+ .+..++++.++.+
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNPEDPNMPRIVEVPAG 89 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCCCCCchHHHHHHHHh
Confidence 34668899988888887776542 3448999999999999999987 5443 3444444444 6777888888887
Q ss_pred hCC
Q 048347 94 LMP 96 (351)
Q Consensus 94 ~~~ 96 (351)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 765
No 271
>PRK04296 thymidine kinase; Provisional
Probab=96.00 E-value=0.01 Score=50.97 Aligned_cols=110 Identities=10% Similarity=-0.074 Sum_probs=60.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
.++.|.|..|.||||+|.....+ ...+-..++.+ -+ ++.......++.+++.+... .......++.+.+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~-k~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVF-KPAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEE-eccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh-hC
Confidence 46778999999999999888877 33333333333 22 34333344556666532221 112344555555555 33
Q ss_pred CceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 121 NKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 121 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
++.-+||+|.+.-. ++...+...+ ...|..|++ .++.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 34458999999432 2223333332 234667777 6654
No 272
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.99 E-value=0.025 Score=51.09 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
++-+++.|.|.+|+|||+||.++.... .+ .=+.+++++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEec
Confidence 456888999999999999999875542 12 23456777765
No 273
>PRK08149 ATP synthase SpaL; Validated
Probab=95.98 E-value=0.026 Score=54.34 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=51.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC--ccC-CCC--------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL--SEI-LDN-------- 106 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~--~~~-~~~-------- 106 (351)
-..++|+|..|+|||||++.++..... +.++...+. -++.++..+........... ... +..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 357899999999999999999886322 233333333 66777777776643322110 000 111
Q ss_pred -CHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 107 -DFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 107 -~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
..-.+.+.+++ ++|+.|+++||+-.
T Consensus 227 ~~a~tiAE~fr~--~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRD--QGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHH--cCCCEEEEccchHH
Confidence 11122333443 48999999999943
No 274
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.95 E-value=0.024 Score=54.62 Aligned_cols=94 Identities=6% Similarity=0.079 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCH------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDF------ 108 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~------ 108 (351)
-..++|+|..|+|||||++.+... ... +.++.+-+. -.+.++..+++..-..+... ...+....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~~--dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TTA--DVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CCC--CEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 357899999999999999999876 222 455555444 55566666654432111100 00011111
Q ss_pred ---HHHHHHHHHhcCCceEEEEEeCCCCh-hhHHHH
Q 048347 109 ---EMKKNTLHNYLKNKRYLIVIQDVWRG-DIWDFL 140 (351)
Q Consensus 109 ---~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~~~l 140 (351)
-.+.+.+++ ++++.|+++||+-.. .++..+
T Consensus 238 ~~A~tiAEyfrd--~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 238 ETATTIAEYFRD--QGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred HHHHHHHHHHHH--cCCCEEEEEcChHHHHHHHHHH
Confidence 112334443 589999999999433 333433
No 275
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.95 E-value=0.0055 Score=51.85 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++.|.|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999998776
No 276
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.95 E-value=0.00097 Score=64.84 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred eeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 259 LVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 259 lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
+|..++.+.+|+.|.+..| .+..+|.+.+.| .|..||++ |+++-.+|-.+.+|+.|++|-|.+-|
T Consensus 181 lpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred chHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence 3444444444444444444 344444444422 25555665 45666666666666666666665543
No 277
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.95 E-value=0.03 Score=52.09 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+++++|+.|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998876
No 278
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.021 Score=54.44 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=50.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
.-..+-|||..|.|||-|++++.+. ...+......+++ +.+.+..++...+..+ -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~--~se~f~~~~v~a~~~~-------------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL--TSEDFTNDFVKALRDN-------------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec--cHHHHHHHHHHHHHhh-------------hHHHHHHhh
Confidence 3568889999999999999999999 6666664333343 3445555555444432 144555555
Q ss_pred CCceEEEEEeCCCC
Q 048347 120 KNKRYLIVIQDVWR 133 (351)
Q Consensus 120 ~~k~~LlVLDdv~~ 133 (351)
.-=++++||++-
T Consensus 175 --~~dlllIDDiq~ 186 (408)
T COG0593 175 --SLDLLLIDDIQF 186 (408)
T ss_pred --ccCeeeechHhH
Confidence 333788899964
No 279
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.93 E-value=0.068 Score=44.68 Aligned_cols=112 Identities=10% Similarity=0.082 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccc-C--CCe---eEEEEEe--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKN-Y--FDC---CAWVYYQ--LSLDMMLDAIMKSLMPLSALSEILDNDFEMKK 112 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~--F~~---~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 112 (351)
-.+++|+|..|.|||||++.+........ . ++. +.++.-. +....+...+... ... .....+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~----~LS~G~~~r 99 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD----VLSGGEQQR 99 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC----CCCHHHHHH
Confidence 45899999999999999999987732111 0 111 1111111 1111233333211 111 222334444
Q ss_pred HHHHHhcCCceEEEEEeCCCCh---hhHHHHHhhcCCCCCCcEEEE-Eeeccc
Q 048347 113 NTLHNYLKNKRYLIVIQDVWRG---DIWDFLKEALPDHQNGSRILT-ALIHIV 161 (351)
Q Consensus 113 ~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~Iiv-TR~~~v 161 (351)
-.+.+.+..+.-++++|+--.. .....+...+... +..+|+ |++...
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~ 150 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSL 150 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhH
Confidence 5556666677778889877533 2233333333222 355666 876543
No 280
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.90 E-value=0.029 Score=54.91 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=34.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~ 96 (351)
-.|++++|+.|+||||++.+++.....+..-..+..+... ....+-++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 4799999999999999999998763222222234455444 2333444444554443
No 281
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.89 E-value=0.008 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999877
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.89 E-value=0.035 Score=46.94 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|.|..|+|||||++.+.--
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999877
No 283
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.89 E-value=0.0062 Score=51.86 Aligned_cols=36 Identities=6% Similarity=0.084 Sum_probs=28.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY 78 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 78 (351)
.+++.|+|+.|+|||||++++... ....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 468889999999999999999988 666775444443
No 284
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.88 E-value=0.091 Score=42.82 Aligned_cols=24 Identities=4% Similarity=0.124 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|.|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999887
No 285
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.88 E-value=0.011 Score=58.76 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=27.3
Q ss_pred HHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 31 LDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 31 ~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.+.....++.+|+|.|..|+||||||+.+...
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3344434456899999999999999999999876
No 286
>PRK04040 adenylate kinase; Provisional
Probab=95.88 E-value=0.0063 Score=52.14 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=31.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMP 96 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~ 96 (351)
.+|+|+|+.|+||||+++.+... ....+. +++ ..++...++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~--l~~~~~---~~~----~g~~~~~~a~~~g~ 48 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK--LKEDYK---IVN----FGDVMLEVAKEEGL 48 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--hccCCe---EEe----cchHHHHHHHHcCC
Confidence 58999999999999999999887 421222 222 24566666655554
No 287
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.88 E-value=0.0068 Score=51.30 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999886
No 288
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.87 E-value=0.018 Score=57.84 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.-++.-+.|++|+||||||..++.+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 34578889999999999999999888
No 289
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.87 E-value=0.024 Score=54.76 Aligned_cols=87 Identities=9% Similarity=0.065 Sum_probs=50.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHH-----
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFE----- 109 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~----- 109 (351)
-..++|.|..|+|||||++.+....+ . +.++++-+. -.+.++..+.+.+-..+... ..-+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~--~--d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD--A--DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC--C--CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999998732 2 344444454 55556665554432211100 000111111
Q ss_pred ----HHHHHHHHhcCCceEEEEEeCCCC
Q 048347 110 ----MKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 110 ----~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
.+.+.+++ ++++.|+++||+-.
T Consensus 234 ~~a~tiAEyfrd--~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRD--QGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHH--CCCcEEEEEeCcHH
Confidence 12344443 48999999999943
No 290
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.87 E-value=0.048 Score=47.68 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999776
No 291
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.83 E-value=0.054 Score=50.85 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=43.0
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC----CCeeEEEEEe--CCHHHHHHHHHHHhCC
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY----FDCCAWVYYQ--LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~--~~~~~~~~~i~~~~~~ 96 (351)
.|-.+|..+=+.-.++-|.|..|+|||+||..++-....... -..++||+.. |.++.+ .+|++.+..
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 344444333355688889999999999999887744222111 1257888877 677665 455666543
No 292
>PRK06217 hypothetical protein; Validated
Probab=95.83 E-value=0.0063 Score=51.84 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
..|.|.|++|+||||+|+++....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999873
No 293
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.82 E-value=0.0008 Score=60.59 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccC--hhhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFP--EELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP--~~i~~ 313 (351)
..+..+++|..|+||+|.. ..+.-.-..+-+.+.|.|++| .++.+. .+++|.+|.+||+++ ++++.+- .+||+
T Consensus 323 ~nLa~L~~L~~LDLS~N~L--s~~~Gwh~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 323 QNLAELPQLQLLDLSGNLL--AECVGWHLKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGN 397 (490)
T ss_pred hhhhhcccceEeecccchh--HhhhhhHhhhcCEeeeehhhh-hHhhhh-hhHhhhhheeccccc-cchhhHHHhccccc
Confidence 3456678999999954422 122222345667889999998 577776 688999999999998 4677665 37899
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
|+-|+++.+.+.|
T Consensus 398 LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 398 LPCLETLRLTGNP 410 (490)
T ss_pred ccHHHHHhhcCCC
Confidence 9999999999877
No 294
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.014 Score=58.50 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=45.5
Q ss_pred CCCCCccccchhhHHHHHHHHHc----cCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIE----RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
-+-+++-.|+++-++++.+.+.- +..+-++++.+|+.|+|||.+|+.++.- ....|
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF 466 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF 466 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce
Confidence 34467789999999999998853 3456789999999999999999999887 55554
No 295
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.82 E-value=0.0054 Score=52.45 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 296
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.82 E-value=0.034 Score=46.82 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=57.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHHHhCCCCCCc--cC-C--CCCHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSALS--EI-L--DNDFEMK 111 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~~~--~~-~--~~~~~~~ 111 (351)
-.+++|+|..|.|||||.+.+..- ... ....+++.-. .......+.+.. +....... .. + ....+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~--~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~-~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL--LRP-TSGRVRLDGADISQWDPNELGDHVGY-LPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--cCC-CCCeEEECCEEcccCCHHHHHhheEE-ECCCCccccCcHHHHCcCHHHHH
Confidence 458999999999999999999876 222 2222332211 122222111110 00000000 00 0 1122333
Q ss_pred HHHHHHhcCCceEEEEEeCCCCh---hhHHHHHhhcCC-CCCCcEEEE-Eeecc
Q 048347 112 KNTLHNYLKNKRYLIVIQDVWRG---DIWDFLKEALPD-HQNGSRILT-ALIHI 160 (351)
Q Consensus 112 ~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gs~Iiv-TR~~~ 160 (351)
.-.+...+..+.-++++|+--.. .....+...+.. ...|..||+ |.+.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 44456666677778899988544 223333333321 223666777 87664
No 297
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.82 E-value=0.0073 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 298
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.81 E-value=0.016 Score=51.63 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=30.0
Q ss_pred hHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 26 KMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 26 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...++++.+.....+..+|||.|++|+||+||..++...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 455677777666567899999999999999999887665
No 299
>PRK00625 shikimate kinase; Provisional
Probab=95.81 E-value=0.0057 Score=51.66 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.++||.|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778999999999999999877
No 300
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.81 E-value=0.062 Score=52.49 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=56.3
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCcc-CCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSE-ILD 105 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 105 (351)
.+++-..|-.+=..-.++.|.|.+|+|||||+.++... ....-..++|++..-+..++... ++.++.....-. ...
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~~qi~~r-a~rlg~~~~~l~~~~e 142 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESASQIKLR-AERLGLPSDNLYLLAE 142 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccHHHHHHH-HHHcCCChhcEEEeCC
Confidence 34455555443344578899999999999999999876 33222345666644333333222 444443211000 122
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEeCCC
Q 048347 106 NDFEMKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 106 ~~~~~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
.+.+++.+.+.+ .+.-++|+|.+.
T Consensus 143 ~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 143 TNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCHHHHHHHHHh---hCCCEEEEechh
Confidence 345555555533 355689999984
No 301
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.80 E-value=0.029 Score=49.82 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCccccchhhHHH---HHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCCcc
Q 048347 17 NKVDLDLEDKMEE---LLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNSSY 66 (351)
Q Consensus 17 ~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 66 (351)
-+++||.++.+.+ |++.|... +.-.+-|-.+|+.|.|||.+|+++.+..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 3568898777665 44555432 23356677899999999999999999943
No 302
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.79 E-value=0.0063 Score=50.97 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|.+.|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 357889999999999999999988
No 303
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.79 E-value=0.017 Score=56.06 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=54.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCH-----HH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDF-----EM 110 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~-----~~ 110 (351)
..++|.|.+|+|||||+.++...... .+-+.++++-+. -.+.++..++...-...... ...+.... ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 56899999999999999988877322 244666666555 66667777766432211110 00011111 11
Q ss_pred HHHHHHHhc---CCceEEEEEeCCC
Q 048347 111 KKNTLHNYL---KNKRYLIVIQDVW 132 (351)
Q Consensus 111 ~~~~l~~~L---~~k~~LlVLDdv~ 132 (351)
..-.+.+++ .+++.|+++|++-
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccch
Confidence 123344555 3799999999994
No 304
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.79 E-value=0.014 Score=59.18 Aligned_cols=74 Identities=8% Similarity=-0.030 Sum_probs=57.5
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccc-cCCCeeEEEEEe-CCHHHHHHHHHHHh
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVK-NYFDCCAWVYYQ-LSLDMMLDAIMKSL 94 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~-~~~~~~~~~i~~~~ 94 (351)
-++++|.++-++.|...+... +-+.++|..|+||||+|+.+... +. .+|+..+|...+ .+...+++.++.+.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~--l~~~~~~~~~~~~np~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAEL--LPKEELQDILVYPNPEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHH--cChHhHHHheEeeCCCcchHHHHHHHHHhc
Confidence 356889888888888777654 35778999999999999999877 33 235777887777 88888888888766
Q ss_pred CC
Q 048347 95 MP 96 (351)
Q Consensus 95 ~~ 96 (351)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 65
No 305
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.78 E-value=0.0044 Score=59.38 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=45.3
Q ss_pred CceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEe
Q 048347 243 HLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLES 322 (351)
Q Consensus 243 ~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l 322 (351)
+|+.|++ .......+|..++.++.|+.|++++| .+.++|...+.+.+|+.|++++ ..+..+|..++.+.+|++|.+
T Consensus 141 nL~~L~l--~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDL--SDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccc--cccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhh
Confidence 5666666 22233344444556666666666666 4666665555666666666665 356666665555555666666
Q ss_pred cCC
Q 048347 323 WWP 325 (351)
Q Consensus 323 ~~~ 325 (351)
++-
T Consensus 217 ~~N 219 (394)
T COG4886 217 SNN 219 (394)
T ss_pred cCC
Confidence 554
No 306
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.78 E-value=0.052 Score=50.57 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=38.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCC----CeeEEEEEe--CCHHHHHHHHHHHhC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF----DCCAWVYYQ--LSLDMMLDAIMKSLM 95 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~--~~~~~~~~~i~~~~~ 95 (351)
+.-.++-|+|.+|+|||+||.+++-.......+ ..++||+.. |.+..+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 556889999999999999999987652222111 357888876 67666554 444443
No 307
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.77 E-value=0.074 Score=49.35 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=42.8
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc----CCCeeEEEEEe--CCHHHHHHHHHHHhCC
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN----YFDCCAWVYYQ--LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~--~~~~~~~~~i~~~~~~ 96 (351)
.|-.+|-.+=+.-+++-|+|..|+|||+||.+++-..+... .=..++||+.. |..+.+.+ +++.++.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34444433335568899999999999999988764322221 11356788776 67776654 5666544
No 308
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.76 E-value=0.066 Score=50.24 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=39.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccc---C-CCeeEEEEEe--CCHHHHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN---Y-FDCCAWVYYQ--LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~~--~~~~~~~~~i~~~~~~ 96 (351)
+.-++.-|.|..|+|||+|+.+++-..+... . -..++||+.. |.++.+.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 5568888999999999999988864422221 1 2356788876 77777655 5666554
No 309
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.76 E-value=0.0095 Score=50.26 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+|.|.|+.|+||||+|+++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999887
No 310
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.75 E-value=0.011 Score=61.28 Aligned_cols=55 Identities=20% Similarity=0.121 Sum_probs=41.7
Q ss_pred CcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 267 PRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 267 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
.+|+.|++++| .+..+|.. ..+|+.|++++ ..+..+|.+++++++|+.|++++.+
T Consensus 402 s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 45667777776 46666643 24577788887 4688899999999999999998865
No 311
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.73 E-value=0.0099 Score=51.47 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=36.9
Q ss_pred ccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE
Q 048347 21 LDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY 78 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 78 (351)
..+..+....++.|.. ..++.+.|++|.|||.||-+..-+.-..+.|+..+++.
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4566777888888873 45888999999999999988877654557787776654
No 312
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.73 E-value=0.008 Score=48.69 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999887
No 313
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.73 E-value=0.0099 Score=54.05 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=26.0
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+++.+.... +-+-++|+.|+|||++++.....
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhcc
Confidence 345666666543 34468999999999999998765
No 314
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.71 E-value=0.057 Score=55.78 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=38.6
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
-..++|.....+.+.+.+..-...-.-|-|.|..|+|||++|+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3469999998888887776433334466789999999999999999873
No 315
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.69 E-value=0.017 Score=52.84 Aligned_cols=79 Identities=6% Similarity=-0.021 Sum_probs=44.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCC--CeeEEEEEe-CC-HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF--DCCAWVYYQ-LS-LDMMLDAIMKSLMPLSALSEILDNDFEMKKNT 114 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~-~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 114 (351)
+...+|||.|..|+||||+|+.+..- ..... ..+..++.. |. ..+.... .+......-++..+.+.+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHH
Confidence 45689999999999999999877544 22111 123344444 22 2222222 221111011356677777777
Q ss_pred HHHhcCCce
Q 048347 115 LHNYLKNKR 123 (351)
Q Consensus 115 l~~~L~~k~ 123 (351)
+...-.++.
T Consensus 134 L~~Lk~g~~ 142 (290)
T TIGR00554 134 LSDLKSGKP 142 (290)
T ss_pred HHHHHCCCC
Confidence 777666553
No 316
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.68 E-value=0.075 Score=50.63 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=48.9
Q ss_pred HHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCC
Q 048347 27 MEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 27 ~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~ 96 (351)
.++|.++|-.+ .+...||-.+|.-|.||||.|..+.+. .+.+=..+.-|... +...+-++.++.|+..
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~--lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY--LKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH--HHHcCCceEEEecccCChHHHHHHHHHHHHcCC
Confidence 35566666432 134688999999999999999998887 55522223344444 7777788899999887
Q ss_pred CCC
Q 048347 97 LSA 99 (351)
Q Consensus 97 ~~~ 99 (351)
+.-
T Consensus 157 ~~f 159 (451)
T COG0541 157 PFF 159 (451)
T ss_pred cee
Confidence 644
No 317
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.66 E-value=0.0087 Score=48.67 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=25.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccc-cCCCeeEEEE
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVK-NYFDCCAWVY 78 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~ 78 (351)
++|.|+|..|+|||||++.+.+. .. ..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEE
Confidence 48999999999999999999998 44 3344443443
No 318
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.66 E-value=0.017 Score=53.79 Aligned_cols=48 Identities=8% Similarity=0.219 Sum_probs=41.9
Q ss_pred CCccccchhhHHHHHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++++|.++.++++++.+... +.+-+|+-++|+-|.||||||+.+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999988754 356789999999999999999998776
No 319
>PTZ00035 Rad51 protein; Provisional
Probab=95.64 E-value=0.11 Score=48.70 Aligned_cols=68 Identities=9% Similarity=-0.000 Sum_probs=41.8
Q ss_pred HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccc---c-CCCeeEEEEEe--CCHHHHHHHHHHHhCC
Q 048347 28 EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVK---N-YFDCCAWVYYQ--LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 28 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~--~~~~~~~~~i~~~~~~ 96 (351)
..|-.+|..+=+.-.++.|+|..|+|||||+..++-..+.. . .=..++|++.. |..+. +.++++.+..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 33444443333567899999999999999999886542221 1 11245677766 66666 3444555443
No 320
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.63 E-value=0.072 Score=50.50 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=34.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSA 99 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~ 99 (351)
-++|.++|+.|+||||-..+++.+......=..+..|+.. -...+-++.-++-+..+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 6899999999999998555544442212222345677766 2333344444444444444
No 321
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.63 E-value=0.068 Score=49.73 Aligned_cols=67 Identities=15% Similarity=0.014 Sum_probs=41.8
Q ss_pred HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc----CCCeeEEEEEe--CCHHHHHHHHHHHhC
Q 048347 28 EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN----YFDCCAWVYYQ--LSLDMMLDAIMKSLM 95 (351)
Q Consensus 28 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~--~~~~~~~~~i~~~~~ 95 (351)
+.+-.+|..+=+.-.++.|.|..|+||||||..++....... .-..++|++.. +.... +.++++.+.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 344444444335678999999999999999998875322211 11246788766 66665 344555443
No 322
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.62 E-value=0.013 Score=48.42 Aligned_cols=35 Identities=6% Similarity=-0.141 Sum_probs=27.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY 78 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 78 (351)
.||-+.|..|+||||||+++... ....-..+..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 57778899999999999999988 655555555554
No 323
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.62 E-value=0.027 Score=50.76 Aligned_cols=102 Identities=20% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccC----CCeeEEEEEe--CCHHHHHHHHHHHhCCCCCC--
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY----FDCCAWVYYQ--LSLDMMLDAIMKSLMPLSAL-- 100 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~-- 100 (351)
.|-++|..+=..-.+.-|+|.+|+|||+||-+++-..++... =..++|++-. |..+.+. +|+++...+...
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l 104 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEIL 104 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhh
Confidence 344444332234578999999999999999887655333322 1247788766 7776665 566654332110
Q ss_pred c---cCCCCCHHHHHHHHH---Hhc-CCceEEEEEeCC
Q 048347 101 S---EILDNDFEMKKNTLH---NYL-KNKRYLIVIQDV 131 (351)
Q Consensus 101 ~---~~~~~~~~~~~~~l~---~~L-~~k~~LlVLDdv 131 (351)
. -....+.+++.+.+. ..+ .++--|||+|.+
T Consensus 105 ~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 105 DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 0 012233444443332 223 234558888887
No 324
>PRK13947 shikimate kinase; Provisional
Probab=95.61 E-value=0.0074 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-|.|+||.|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999887
No 325
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.60 E-value=0.0035 Score=60.10 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=46.4
Q ss_pred CCCceEEEEecccccCceeeeCCCCCC-cccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCE
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCGHGGFP-RQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRK 319 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 319 (351)
++.+..|.+ ..-....+|.....+. +|+.|+++++ .+..+|..++.++.|+.|++++| .+..+|...+.+++|+.
T Consensus 115 ~~~l~~L~l--~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDL--DNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEec--CCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 355666666 3333345555555553 6666666666 46666555666666666666663 46666665556666666
Q ss_pred EEecCC
Q 048347 320 LESWWP 325 (351)
Q Consensus 320 L~l~~~ 325 (351)
|++++.
T Consensus 191 L~ls~N 196 (394)
T COG4886 191 LDLSGN 196 (394)
T ss_pred eeccCC
Confidence 666553
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.60 E-value=0.042 Score=45.79 Aligned_cols=109 Identities=9% Similarity=-0.048 Sum_probs=58.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
-.+++|.|..|.|||||.+.++.. .. .....+++.-. .+..+..+ +.+.- .+ +....+...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~--~~-~~~G~v~~~g~~~~~~~~~~~~~---~~i~~---~~--qLS~G~~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL--YK-PDSGEILVDGKEVSFASPRDARR---AGIAM---VY--QLSVGERQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEEECCEECCcCCHHHHHh---cCeEE---EE--ecCHHHHHHHHHH
Confidence 358999999999999999999877 32 23344443322 11111110 00100 00 1223334455566
Q ss_pred HhcCCceEEEEEeCCCCh---hhHHHHHhhcCC-CCCCcEEEE-Eeecc
Q 048347 117 NYLKNKRYLIVIQDVWRG---DIWDFLKEALPD-HQNGSRILT-ALIHI 160 (351)
Q Consensus 117 ~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gs~Iiv-TR~~~ 160 (351)
+.+..+.-++++|+--.. .....+...+.. ...|..||+ |++..
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 677777788889987543 223333333321 123556666 77654
No 327
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.59 E-value=0.0046 Score=47.76 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999998877
No 328
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.055 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|.|..|.|||||.+.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999887
No 329
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.59 E-value=0.006 Score=57.41 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=70.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe-eEEEEEe--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC-CAWVYYQ--LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
..+.+.++|.|||||||++-.+.. +...|.. ++++... .+...+.-.....+.-... +.+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 367899999999999999998877 4556654 5555555 5555555555555655443 3334556677
Q ss_pred HhcCCceEEEEEeCCCCh-hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 117 NYLKNKRYLIVIQDVWRG-DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 117 ~~L~~k~~LlVLDdv~~~-~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
....+++.++|+||..+. +.--.+...+..+...-.|+. +|+.
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~ 127 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREA 127 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhh
Confidence 777899999999999655 223333344443333444554 4443
No 330
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.55 E-value=0.046 Score=49.43 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=57.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccc--ccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHH----
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYV--KNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFE---- 109 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~---- 109 (351)
..++|.|-.|+|||+|+..+.++.++ +.+-+.++++-+. -++.++..++...=..+... .+.+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56889999999999999998877331 1234566777666 77777777776542211110 000111111
Q ss_pred -HHHHHHHHhc---CCceEEEEEeCCCCh-hhHHHH
Q 048347 110 -MKKNTLHNYL---KNKRYLIVIQDVWRG-DIWDFL 140 (351)
Q Consensus 110 -~~~~~l~~~L---~~k~~LlVLDdv~~~-~~~~~l 140 (351)
...-.+.+++ ++++.|+++||+-.. +++.++
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 1122334444 378999999999543 344444
No 331
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.55 E-value=0.0074 Score=50.89 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=28.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccc-cCCCeeEEEEEe
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVK-NYFDCCAWVYYQ 80 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~ 80 (351)
..++-+.|+.|+|||.||+.+..- +. ......+-+..+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMS 41 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhh
Confidence 467788999999999999999887 54 455555555555
No 332
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.55 E-value=0.0084 Score=49.12 Aligned_cols=22 Identities=5% Similarity=0.166 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+.|+.|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678899999999999999887
No 333
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.54 E-value=0.011 Score=50.49 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999777
No 334
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.018 Score=48.56 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
-.++.|.|++|+||+||+++++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999993
No 335
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.54 E-value=0.0072 Score=51.30 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
||.|.|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 336
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.008 Score=50.99 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=48.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.|.|.|.+|+||||+|+.+.+...+ .|.+.-.|.... ....++-..+...+....- -+.+-....+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~l------v~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-PHLDTGDILRAAIAERTELGEEIKKYIDKGEL------VPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-cEEcHhHHhHhhhccCChHHHHHHHHHHcCCc------cchHHHHHHHHHHHHh
Confidence 4678999999999999999888332 122211111111 1223333333333333221 1222223334444422
Q ss_pred --ceEEEEEeCCCCh-hhHHHHHhhcCC
Q 048347 122 --KRYLIVIQDVWRG-DIWDFLKEALPD 146 (351)
Q Consensus 122 --k~~LlVLDdv~~~-~~~~~l~~~l~~ 146 (351)
.+.-+|+|+.=.. .++..+...+..
T Consensus 75 ~d~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 75 ADCKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred hcccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence 2227888888544 455556555544
No 337
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.54 E-value=0.042 Score=45.13 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|.|.|..|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999998877
No 338
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.54 E-value=0.011 Score=51.29 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999887
No 339
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.52 E-value=0.033 Score=48.70 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=49.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCC--CccCCCCC---------
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSA--LSEILDND--------- 107 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~--~~~~~~~~--------- 107 (351)
..++|.|..|+|||+|+..+.+. .. -+..+++-+. -.+.++.+++...-..+.. .......+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhc--cc--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 46788999999999999999887 32 2233454444 5556666666433111100 00001111
Q ss_pred -HHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 108 -FEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 108 -~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
.-...+.+++ .+|+.|+++||+-.
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhHH
Confidence 1122344444 69999999999943
No 340
>PRK13949 shikimate kinase; Provisional
Probab=95.49 E-value=0.0096 Score=50.08 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|+|+.|+||||+|+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888
No 341
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.49 E-value=0.017 Score=55.97 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 18 KVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
.++.|.++.++++.+.+... -...+-+.++|+.|.|||++|+.+++. ....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE
Confidence 45678999999998877421 022345678999999999999999998 54444
No 342
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.49 E-value=0.01 Score=50.08 Aligned_cols=23 Identities=0% Similarity=0.034 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999877
No 343
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.12 Score=52.80 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHH---HccC-------CCeEEEEEEcCCCChHHHHHHHHhCCccc
Q 048347 18 KVDLDLEDKMEELLDLL---IERQ-------PQLSLVAIIDTMGFDRTAFIGEAYNSSYV 67 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 67 (351)
.++.|.|+-+++|.+.+ .... .-.+=+-++|+.|.|||.||++++-...|
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV 370 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV 370 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC
Confidence 45778887777766655 3221 12233668899999999999999999443
No 344
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.48 E-value=0.023 Score=47.14 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 24 EDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 24 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
.+.+++|.+.+.. +++.++|..|+|||||.+.+....
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567888888843 588889999999999999999883
No 345
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.47 E-value=0.014 Score=50.44 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++..+|+|.|+.|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999886
No 346
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.47 E-value=0.0097 Score=48.28 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|.|.|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999876
No 347
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0078 Score=32.13 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=9.4
Q ss_pred ccEEEEecCCcccccccccc
Q 048347 269 QEILHLKSMLWLEEWKMETG 288 (351)
Q Consensus 269 L~~L~L~~~~~l~~lp~~i~ 288 (351)
|++|++++| .++.+|.+++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 455555555 4445554443
No 348
>PRK13975 thymidylate kinase; Provisional
Probab=95.47 E-value=0.01 Score=50.99 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999988
No 349
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.47 E-value=0.031 Score=53.83 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=49.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCC---ccCCCCCHHH-----H
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSAL---SEILDNDFEM-----K 111 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~-----~ 111 (351)
-..++|.|..|+|||||++.+... .+...-.++++-.. -.+.++..+.+..-..+... ...+...... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~--~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN--TDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 357899999999999999999887 33221112222222 55556665544332211110 0001111111 1
Q ss_pred HHHHHHhc--CCceEEEEEeCCCC
Q 048347 112 KNTLHNYL--KNKRYLIVIQDVWR 133 (351)
Q Consensus 112 ~~~l~~~L--~~k~~LlVLDdv~~ 133 (351)
.-.+.+++ ++++.|+++||+-.
T Consensus 218 a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccchhH
Confidence 12233444 57999999999943
No 350
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.46 E-value=0.11 Score=47.07 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=78.2
Q ss_pred CCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEE-EEe--CCHHHHHHHH
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWV-YYQ--LSLDMMLDAI 90 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~~--~~~~~~~~~i 90 (351)
......++|.... .++..++......-+.+.|+|+.|+|||+-++.+++. . ..+|+ ..+ ++...+...+
T Consensus 68 ~~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s--~-----p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 68 EKLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS--N-----PNALLIEADPSYTALVLILII 139 (297)
T ss_pred ccccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc--C-----ccceeecCChhhHHHHHHHHH
Confidence 3345556664332 2233444333333348889999999999999999988 2 23443 333 6666666666
Q ss_pred HHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcCCCC
Q 048347 91 MKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQ 148 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 148 (351)
...+..... ....+....+...+++..-+++.|+.... +.++.++.-....+
T Consensus 140 ~~~~~~~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 140 CAAAFGATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred HHHHhcccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 655555433 46667788888888899999999988765 56777766554443
No 351
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.46 E-value=0.087 Score=51.53 Aligned_cols=100 Identities=14% Similarity=0.028 Sum_probs=55.0
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCcc-CCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSE-ILD 105 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 105 (351)
..++-.+|..+=..-.++.|.|..|+|||||+.++... ....-..++|++..-...++.. -+..++....... ...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs~~qi~~-ra~rlg~~~~~l~~~~e 156 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEESLQQIKM-RAIRLGLPEPNLYVLSE 156 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCCHHHHHH-HHHHcCCChHHeEEcCC
Confidence 44555555444355678899999999999999998766 3332234567654433333222 1223332211000 223
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEeCCC
Q 048347 106 NDFEMKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 106 ~~~~~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
.+.+++.+.+.+ .+.-++|+|.+-
T Consensus 157 ~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 157 TNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred CCHHHHHHHHHh---cCCcEEEEecch
Confidence 445555555433 245579999884
No 352
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0082 Score=32.04 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.2
Q ss_pred CccEEeecCCccccccChhhhcC
Q 048347 292 KLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 292 ~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
+|++|++++| .+..+|.++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5889999997 677899887654
No 353
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.073 Score=52.69 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHHHccC-----------CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHH
Q 048347 22 DLEDKMEELLDLLIERQ-----------PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAI 90 (351)
Q Consensus 22 Gr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i 90 (351)
|.++-+.++...+...- .-..=|-.||+.|.|||.||++|+|. ..-+| +++- -.+++..
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVK--GPELlNk- 584 (802)
T KOG0733|consen 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVK--GPELLNK- 584 (802)
T ss_pred cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhh--ccCce-----Eeec--CHHHHHH-
Confidence 35566666665554321 11233568999999999999999999 54554 3332 0111111
Q ss_pred HHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh-------------hhHHHHHhhcCCC--CCCcEEEE
Q 048347 91 MKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG-------------DIWDFLKEALPDH--QNGSRILT 155 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~Iiv 155 (351)
-. ..++....+.+.+.=.+-.|.|.+|.++.. ....++.+.+... -.|--||-
T Consensus 585 ---YV---------GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~via 652 (802)
T KOG0733|consen 585 ---YV---------GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIA 652 (802)
T ss_pred ---Hh---------hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEe
Confidence 00 112334444445555678899999999532 2345555555542 23444555
Q ss_pred -Eeeccc---hhhc
Q 048347 156 -ALIHIV---GLSS 165 (351)
Q Consensus 156 -TR~~~v---~lL~ 165 (351)
|...++ ++|+
T Consensus 653 ATNRPDiIDpAiLR 666 (802)
T KOG0733|consen 653 ATNRPDIIDPAILR 666 (802)
T ss_pred ecCCCcccchhhcC
Confidence 777776 5554
No 354
>PLN02348 phosphoribulokinase
Probab=95.43 E-value=0.062 Score=50.99 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=24.4
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 38 QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 38 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++..+|||.|.+|+||||+|+.+.+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999887
No 355
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.035 Score=49.07 Aligned_cols=57 Identities=12% Similarity=-0.011 Sum_probs=40.6
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
|.+.-.++=|.|-.++++.+.+.-. -+..+=|-.+|+.|.|||.||++|.++ .+..|
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 5454556667888888887776321 022344568999999999999999999 55554
No 356
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.39 E-value=0.011 Score=47.71 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|-++|..|+|||+||+.++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999887
No 357
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.37 E-value=0.047 Score=52.70 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=48.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHHHH--
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFEMK-- 111 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~-- 111 (351)
+-..++|.|..|+|||||++.+.+. .. .+...+.-+. ..+.+++.+....=..+... ..-+.......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~--~~--~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA--PD--ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC--CC--CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 3457899999999999999999887 22 3334444444 55555555543211000000 00011111111
Q ss_pred ---HHHHHHhc--CCceEEEEEeCCCC
Q 048347 112 ---KNTLHNYL--KNKRYLIVIQDVWR 133 (351)
Q Consensus 112 ---~~~l~~~L--~~k~~LlVLDdv~~ 133 (351)
.-.+.+++ ++++.|+++||+-.
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 12233333 48899999999953
No 358
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.34 E-value=0.0039 Score=61.01 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhh-cCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELW-RIK 315 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~-~L~ 315 (351)
.-++.|++|+||+|.. ..+|.. +..-.++++|+|++| .++.+-.. +..|.+|-+|.|+. ..+..+|.-+. +|+
T Consensus 146 ~~l~alrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLP 221 (873)
T ss_pred HhHhhhhhhhhhhchh--hcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeeccc-CcccccCHHHhhhcc
Confidence 3445555555533321 122221 222234555555555 34444332 44555555555555 34555554332 355
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
.|+.|++..
T Consensus 222 ~L~~LdLnr 230 (873)
T KOG4194|consen 222 KLESLDLNR 230 (873)
T ss_pred hhhhhhccc
Confidence 555555543
No 359
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.33 E-value=0.044 Score=53.00 Aligned_cols=88 Identities=7% Similarity=0.122 Sum_probs=48.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEE-e-CCHHHHHHHHHHHhCCCCC--CccCCCCC---------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYY-Q-LSLDMMLDAIMKSLMPLSA--LSEILDND--------- 107 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~-~~~~~~~~~i~~~~~~~~~--~~~~~~~~--------- 107 (351)
-.+++|+|..|+|||||++.+....+ ....+++..- . -++.++....+.......- ..+.+...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789999999999999998876622 1223333321 1 4555555444444322110 01101111
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 108 FEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 108 ~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
.-.+.+.+++ ++++.|+++||+-.
T Consensus 242 a~~iAEyfrd--~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccchHH
Confidence 1122344443 48999999999943
No 360
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.21 Score=46.68 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=28.4
Q ss_pred CceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 121 NKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 121 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
+++-.+|+|+++.. .+.+.+...+.....++.+|+ |.+.+
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 44445678999865 678888888877666777777 76554
No 361
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.31 E-value=0.022 Score=52.64 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+.+.+.....+..+|+|.|.+|+|||||+..+...
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555444456899999999999999999998775
No 362
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.31 E-value=0.057 Score=50.25 Aligned_cols=87 Identities=8% Similarity=0.102 Sum_probs=48.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCC-------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDND------- 107 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~------- 107 (351)
-..++|+|..|+|||||++.+... ... +.....-+. -++.++.......-...... .+.+...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999999887 322 233333333 55555555554432211000 0001111
Q ss_pred --HHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 108 --FEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 108 --~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
.-.+.+.+++ ++|..|+++||+-.
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccchH
Confidence 1122344443 58999999999843
No 363
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.31 E-value=0.087 Score=52.07 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=60.1
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCC------
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSAL------ 100 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~------ 100 (351)
..++-++|-.+=.+-+++-|.|.+|+||||||.++... ...+-+.+++++..=+..++.... +.++-+...
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs~~~i~~~~-~~lg~~~~~~~~~g~ 325 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEESRAQLLRNA-YSWGIDFEEMEQQGL 325 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCHHHHHHHH-HHcCCChHHHhhCCc
Confidence 45566666554456788899999999999999998776 333344566666544455555553 344322110
Q ss_pred -----ccCCCCCHHHHHHHHHHhcCC-ceEEEEEeCC
Q 048347 101 -----SEILDNDFEMKKNTLHNYLKN-KRYLIVIQDV 131 (351)
Q Consensus 101 -----~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv 131 (351)
..+.....++..+.+.+.++. +.-.+|+|.+
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 001223345566666666643 3346777776
No 364
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.30 E-value=0.029 Score=52.35 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++.+.+.....+..+|+|.|..|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555443456789999999999999999987666
No 365
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.29 E-value=0.067 Score=51.67 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=50.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC--ccCCCCCH-------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL--SEILDNDF------- 108 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~--~~~~~~~~------- 108 (351)
-..++|.|..|+|||||.+.+++. ... +.++.+-+. -.+.++....+..-..+... -...+.+.
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~--~~~--dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRS--AEV--DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcC--CCC--CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999998 322 455555555 55555554433321111000 00011111
Q ss_pred ---HHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 109 ---EMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 109 ---~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
-.+.+.+++ .+|+.|+++|++-.
T Consensus 238 ~~a~tiAEyfrd--~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRD--QGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHH--cCCCEEEeccchhH
Confidence 123444444 48999999999943
No 366
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.28 E-value=0.014 Score=50.97 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
.-|+|+|++|+|||||+.++..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 467799999999999999998873
No 367
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.27 E-value=0.013 Score=49.50 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..|.|+|+.|+||||+|+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46889999999999999999877
No 368
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.27 E-value=0.057 Score=49.75 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHH
Q 048347 16 DNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAI 90 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i 90 (351)
+...++|...+..++-.++... .....-+.|+|+.|.|||+|...+..+ .+..=+...-|... ..-+-.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 5667899999999999988643 011234557899999999999888777 33332333344444 2223355666
Q ss_pred HHHhCCCCCCccCCCCCHHHHHHHHHHhcC------CceEEEEEeCCCC
Q 048347 91 MKSLMPLSALSEILDNDFEMKKNTLHNYLK------NKRYLIVIQDVWR 133 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~------~k~~LlVLDdv~~ 133 (351)
.+|+..+....-....+..+-..++-..|+ +-+.++|+|..+-
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDl 148 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDL 148 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhc
Confidence 666544221100122333333444444443 2357778877753
No 369
>PRK13948 shikimate kinase; Provisional
Probab=95.24 E-value=0.013 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+.|.++||.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999887
No 370
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.24 E-value=0.07 Score=51.96 Aligned_cols=99 Identities=10% Similarity=0.125 Sum_probs=55.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCC--eeEEEEEe---CCHHHHHHHHHHHhCCCCCC--ccCCCC-C-----H
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD--CCAWVYYQ---LSLDMMLDAIMKSLMPLSAL--SEILDN-D-----F 108 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~---~~~~~~~~~i~~~~~~~~~~--~~~~~~-~-----~ 108 (351)
..++|.|-.|+|||||+..+.+..+..+.+. .++++-+. -.+.+++.++...=..+... -...+. . .
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4688999999999999999988744332222 33344444 66667777766432211100 000111 1 1
Q ss_pred HHHHHHHHHhcC---CceEEEEEeCCCCh-hhHHHH
Q 048347 109 EMKKNTLHNYLK---NKRYLIVIQDVWRG-DIWDFL 140 (351)
Q Consensus 109 ~~~~~~l~~~L~---~k~~LlVLDdv~~~-~~~~~l 140 (351)
....-.+.++++ +++.|+++||+-.. .++..+
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REI 257 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREI 257 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHH
Confidence 111233455554 68899999999433 333443
No 371
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.21 E-value=0.035 Score=54.99 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=47.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccc-CCCeeEEEEEe----CCHHHHHHHHHHHhCCCCCCcc-CCCCCHHHHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKN-YFDCCAWVYYQ----LSLDMMLDAIMKSLMPLSALSE-ILDNDFEMKKNTL 115 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~----~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~l 115 (351)
....|+|..|+|||||++.+.+. +.. +=++.++|-+. -.+.++.+.+-.++........ ........+.-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999987 433 23444443333 3333443333111111111000 0001111122223
Q ss_pred HHhc--CCceEEEEEeCCCC
Q 048347 116 HNYL--KNKRYLIVIQDVWR 133 (351)
Q Consensus 116 ~~~L--~~k~~LlVLDdv~~ 133 (351)
.+++ .++.+||++|++-.
T Consensus 495 Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHcCCCEEEEEeCchH
Confidence 3444 68999999999943
No 372
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.21 E-value=0.018 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.|+|++|+|||||++++...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 578899999999999999999887
No 373
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.20 E-value=0.021 Score=51.76 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=18.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999887
No 374
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.027 Score=49.56 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
+-.++||+|.+|.||||||+.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999854
No 375
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.20 E-value=0.015 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|.|+|+.|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999877
No 376
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.19 E-value=0.019 Score=44.24 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHh
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAY 62 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~ 62 (351)
-..++|.|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999986
No 377
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.19 E-value=0.035 Score=53.77 Aligned_cols=91 Identities=9% Similarity=0.152 Sum_probs=54.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC--ccCCCC-CHH-----H
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL--SEILDN-DFE-----M 110 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~--~~~~~~-~~~-----~ 110 (351)
..++|.|.+|+|||+|+.++....+ +.+-+.++++-+. -.+.++..++...=..+... ...... ... .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 5689999999999999999877722 2233567777666 56666777765432111100 000111 111 1
Q ss_pred HHHHHHHhcC---CceEEEEEeCCCC
Q 048347 111 KKNTLHNYLK---NKRYLIVIQDVWR 133 (351)
Q Consensus 111 ~~~~l~~~L~---~k~~LlVLDdv~~ 133 (351)
..-.+.++++ +++.|+++||+-.
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 2334455554 5899999999943
No 378
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.19 E-value=0.071 Score=51.80 Aligned_cols=89 Identities=11% Similarity=0.191 Sum_probs=52.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCC-CeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHH-----
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYF-DCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFE----- 109 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~----- 109 (351)
..++|.|..|+|||||+..+... ..... +.++++-+. -.+.++..++...-..+... ...+.....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999988666 22221 345555554 66667777776542211100 000111111
Q ss_pred HHHHHHHHhc---CCceEEEEEeCCC
Q 048347 110 MKKNTLHNYL---KNKRYLIVIQDVW 132 (351)
Q Consensus 110 ~~~~~l~~~L---~~k~~LlVLDdv~ 132 (351)
...-.+.+++ ++++.|+++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 1123345555 5799999999994
No 379
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.19 Score=44.96 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=32.8
Q ss_pred cccchhhHHHHHHHHHcc----C-------CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 20 DLDLEDKMEELLDLLIER----Q-------PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 20 ~vGr~~~~~~l~~~L~~~----~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+=|-.+.++++.+.+... + +..+=|-.+|+.|.|||.+|++|.|+
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 445677777777765322 0 22345668999999999999999999
No 380
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.17 E-value=0.016 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCCcc
Q 048347 44 VAIIDTMGFDRTAFIGEAYNSSY 66 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~~~ 66 (351)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67899999999999999987743
No 381
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.15 E-value=0.031 Score=47.38 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHH
Q 048347 44 VAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDA 89 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 89 (351)
+.|.|.+|+|||+||.++... .-..=..++|++...+..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCHHHHHHH
Confidence 568899999999999987665 22222456777665555555544
No 382
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.14 E-value=0.046 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-..++|+|..|+|||||++.+...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998886
No 383
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.12 E-value=0.043 Score=50.87 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=57.5
Q ss_pred HHHHHHHccC-CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCc-cCCCC
Q 048347 29 ELLDLLIERQ-PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALS-EILDN 106 (351)
Q Consensus 29 ~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~ 106 (351)
.|-..|-.++ ++-+++-|+|..|+||||||-++... ....-..++||... ..+-...+..++.+...- -....
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e---~~ld~~~a~~lGvdl~rllv~~P~ 114 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAE---HALDPEYAESLGVDLDRLLVVQPD 114 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESS---S---HHHHHHTT--GGGEEEEE-S
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCc---ccchhhHHHhcCccccceEEecCC
Confidence 3444443232 56689999999999999999998877 54455568898865 123334455555433210 01234
Q ss_pred CHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 107 DFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 107 ~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
..++....+...++. .--++|+|-|-
T Consensus 115 ~~E~al~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 115 TGEQALWIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp SHHHHHHHHHHHHHTTSESEEEEE-CT
T ss_pred cHHHHHHHHHHHhhcccccEEEEecCc
Confidence 456666666666654 34588999984
No 384
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.10 E-value=0.013 Score=48.77 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|.++|+.|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999999887
No 385
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.10 E-value=0.018 Score=50.06 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++++|+++|..|+|||||.+++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999998876
No 386
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.10 E-value=0.046 Score=49.82 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
.+..++.|.|..|+|||||++++.+. .+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~ 132 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV 132 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC
Confidence 46899999999999999999999888 54443
No 387
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.06 E-value=0.016 Score=55.73 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCccccchhhHHHHHHHHHcc------------C--CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER------------Q--PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~------------~--~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..++|.|+-++.+...+... + ..-.-+.++|+.|+|||++|+.+...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999888886555211 0 01245778999999999999999876
No 388
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.05 E-value=0.016 Score=51.62 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=20.9
Q ss_pred EEcCCCChHHHHHHHHhCCcccccCCCeeEEEEE
Q 048347 46 IIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYY 79 (351)
Q Consensus 46 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 79 (351)
|+||+|+||||+++.+.+. ....-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhccCCceEEEc
Confidence 6899999999999999887 3333333344443
No 389
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.05 E-value=0.048 Score=50.57 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=51.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHh
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNY 118 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (351)
-..+.|.|..|+|||||++.+... +..... .+.+.-. ..... .....-...... .....-...+.++..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~~-iv~ied~~El~~~~--~~~~~l~~~~~~----~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDER-IITIEDTREIFLPH--PNYVHLFYSKGG----QGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCcccc-EEEEcCccccCCCC--CCEEEEEecCCC----CCcCccCHHHHHHHH
Confidence 468889999999999999999877 333222 2222111 11110 000000000000 111122345666777
Q ss_pred cCCceEEEEEeCCCChhhHHHHHhh
Q 048347 119 LKNKRYLIVIQDVWRGDIWDFLKEA 143 (351)
Q Consensus 119 L~~k~~LlVLDdv~~~~~~~~l~~~ 143 (351)
|+...=.+++|.+...+.++.+...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~ 239 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV 239 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH
Confidence 8888888999999987777644333
No 390
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.04 E-value=0.02 Score=49.43 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999988
No 391
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.03 E-value=0.016 Score=49.57 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999888
No 392
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.03 E-value=0.049 Score=52.40 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|.|..|+|||||++.+...
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999877
No 393
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.02 E-value=0.018 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEEcC-CCChHHHHHHHHhCC
Q 048347 42 SLVAIIDT-MGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~-gGiGKTtLa~~v~~~ 64 (351)
++|+|+|+ ||+||||++..+..-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~a 25 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWA 25 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 68999999 999999999988765
No 394
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.12 Score=51.69 Aligned_cols=57 Identities=16% Similarity=-0.021 Sum_probs=41.3
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
+.+.-+++=|.|+-+.+|.+.+... -+..+=|-.+|++|.|||++|+++.+. ..-.|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF 496 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF 496 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe
Confidence 4454455566888888887766532 134566778999999999999999999 44444
No 395
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.02 E-value=0.045 Score=50.37 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=29.9
Q ss_pred hHHHHHHHH---HccCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 26 KMEELLDLL---IERQPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 26 ~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
...+|.++| .+.+.....|.|+|.+|+|||+++..+....
T Consensus 20 tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 20 TQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555555 4445556678899999999999999998763
No 396
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.02 E-value=0.017 Score=47.87 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|++|+|+.|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999987
No 397
>PRK14530 adenylate kinase; Provisional
Probab=95.01 E-value=0.018 Score=50.34 Aligned_cols=23 Identities=4% Similarity=0.078 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|.|+|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999876
No 398
>PRK13946 shikimate kinase; Provisional
Probab=95.00 E-value=0.016 Score=49.45 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|.+.|+.|+||||+|+.+.+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999988
No 399
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.14 Score=49.68 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHH-----
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFE----- 109 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~----- 109 (351)
-..++|+|..|+|||||++.+... .. .+.++...+. .++.++...+...-...... ..-+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~--~~--~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF--TE--ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC--CC--CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 357899999999999999999876 21 2233333333 44555555554332211100 000111111
Q ss_pred ----HHHHHHHHhcCCceEEEEEeCCCCh
Q 048347 110 ----MKKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 110 ----~~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
.+.+.+++ ++++.|+++||+-..
T Consensus 244 ~~a~aiAEyfrd--~G~~VLl~~DslTR~ 270 (451)
T PRK05688 244 MYCTRIAEYFRD--KGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHH--CCCCEEEEecchhHH
Confidence 12344443 589999999999543
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.99 E-value=0.022 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||.+.++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58899999999999999999776
No 401
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.018 Score=47.93 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 048347 43 LVAIIDTMGFDRTAFIGEAY 62 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~ 62 (351)
.|+|.|.+|+||||+|+.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 402
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.97 E-value=0.11 Score=45.17 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999876
No 403
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.97 E-value=0.26 Score=49.06 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcc-cccCCCeeEEEEEe--------CC----H------------HHHHHHHHHHhC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSY-VKNYFDCCAWVYYQ--------LS----L------------DMMLDAIMKSLM 95 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~--------~~----~------------~~~~~~i~~~~~ 95 (351)
-..|+|+|+.|+|||||.+.+..... .......-.-+.++ .. + +.-.+..+.++.
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 35789999999999999999965511 11111000001122 01 0 122222222222
Q ss_pred CCCCC--ccCC-CCCHHHHHHHHHHhcCCceEEEEEeCCCCh---hhHHHHHhhcCCCCCCcEEEEEeecc
Q 048347 96 PLSAL--SEIL-DNDFEMKKNTLHNYLKNKRYLIVIQDVWRG---DIWDFLKEALPDHQNGSRILTALIHI 160 (351)
Q Consensus 96 ~~~~~--~~~~-~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTR~~~ 160 (351)
-.... ..+. ....+...-.+...+-.+.-++|||.=-+. +..+.+..++.... |+.|+||.++.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gtvl~VSHDr~ 497 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GTVLLVSHDRY 497 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-CeEEEEeCCHH
Confidence 21110 0012 223333445556667788899999965444 34455555555443 77777688775
No 404
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.07 Score=51.96 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
+..-+-+.|++|+|||+||..+... ..|+.+--++ ++++. +-. +..-...+.+...+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiS----pe~mi-------G~s------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIIS----PEDMI-------GLS------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeC----hHHcc-------Ccc------HHHHHHHHHHHHHHhh
Confidence 4455667899999999999999987 4555422221 11110 000 1122233455556666
Q ss_pred CCceEEEEEeCCCChhhHH------------HHHhhcC-CCCCCcEEEE-Eeeccc
Q 048347 120 KNKRYLIVIQDVWRGDIWD------------FLKEALP-DHQNGSRILT-ALIHIV 161 (351)
Q Consensus 120 ~~k~~LlVLDdv~~~~~~~------------~l~~~l~-~~~~gs~Iiv-TR~~~v 161 (351)
++.--.+|+||+...-+|- .+...+. ...+|-|.+| +-...+
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR 651 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH
Confidence 7788899999997664443 3333343 2455777777 444444
No 405
>PRK13768 GTPase; Provisional
Probab=94.94 E-value=0.024 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++.|+|+||+||||++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 57889999999999999887665
No 406
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.94 E-value=0.018 Score=48.24 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-|.++||.|+||||+.+++...
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHH
Confidence 4678999999999999999876
No 407
>PRK04182 cytidylate kinase; Provisional
Probab=94.94 E-value=0.018 Score=48.52 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 408
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.94 E-value=0.044 Score=52.92 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-..++|.|..|+|||||++.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 458899999999999999999876
No 409
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.93 E-value=0.0097 Score=47.25 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhCCcccccCCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNSSYVKNYFD 72 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 72 (351)
|-++|..|+||||+|+.+... +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 458999999999999999988 555553
No 410
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.92 E-value=0.062 Score=50.65 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
-..+.|.|+.|+||||+++.+... +..+...+++.--. .++-..... ..+..+.. . ..+.....+.++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~tiEd-p~E~~~~~~-~~~i~q~e---v-g~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITIED-PIEYVHRNK-RSLINQRE---V-GLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEEcC-ChhhhccCc-cceEEccc---c-CCCCcCHHHHHHHhhc
Confidence 368889999999999999998876 55444444443211 111110000 00000000 1 1122345667788888
Q ss_pred CceEEEEEeCCCChhhHHHHH
Q 048347 121 NKRYLIVIQDVWRGDIWDFLK 141 (351)
Q Consensus 121 ~k~~LlVLDdv~~~~~~~~l~ 141 (351)
...=.+++|.+.+.+.+....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l 214 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELAL 214 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHH
Confidence 888899999998877665433
No 411
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.92 E-value=0.097 Score=50.59 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|.|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 3467999999999999999998876
No 412
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.90 E-value=0.0031 Score=50.59 Aligned_cols=83 Identities=23% Similarity=0.136 Sum_probs=66.9
Q ss_pred CCCCCCceEEEEecccccCceeeeCC-CCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGH-GGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
+.....|...+|+.|. .+.+|..+ ..|+..+.|++++| .+.++|.++..++.|+.|++++ +.+...|+-|..|.+
T Consensus 49 l~~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccch--hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHh
Confidence 3456778888995443 33566553 45678999999999 7999999999999999999998 568889999999999
Q ss_pred CCEEEecC
Q 048347 317 LRKLESWW 324 (351)
Q Consensus 317 L~~L~l~~ 324 (351)
|-.|+.-+
T Consensus 125 l~~Lds~~ 132 (177)
T KOG4579|consen 125 LDMLDSPE 132 (177)
T ss_pred HHHhcCCC
Confidence 98888765
No 413
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.90 E-value=0.098 Score=54.08 Aligned_cols=99 Identities=14% Similarity=0.005 Sum_probs=62.3
Q ss_pred HHHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCc-c
Q 048347 27 MEELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALS-E 102 (351)
Q Consensus 27 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~-~ 102 (351)
...|-.+|- .+=++-+++-|.|..|+||||||.+++.. ....-..++|++.. ++ ...+++++.+...- -
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~-----~~~A~~lGvDl~~llv 117 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALD-----PDYAKKLGVDTDSLLV 117 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchh-----HHHHHHcCCChhHeEE
Confidence 344555554 23356788889999999999999887665 22333557888765 33 24667776543210 0
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 103 ILDNDFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
....+.+++...+...++. +--++|+|.+-
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2334455666666666644 55689999984
No 414
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.89 E-value=0.089 Score=43.65 Aligned_cols=117 Identities=6% Similarity=-0.126 Sum_probs=59.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCC-----CCccCCCCCH-------
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLS-----ALSEILDNDF------- 108 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~------- 108 (351)
..|-|++-.|.||||+|-...-+ .-.+=..+.++.+- -....--..+++.+..-. ........+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 46778888899999999887666 33333344555544 111111222333332100 0000000111
Q ss_pred HHHHHHHHHhcCCc-eEEEEEeCCCCh-----hhHHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 109 EMKKNTLHNYLKNK-RYLIVIQDVWRG-----DIWDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 109 ~~~~~~l~~~L~~k-~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
....+..++.++.. -=|+|||++-.. -..+.+...+.....+.-+|+ .|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11233344555443 449999999544 234555555555555666777 77654
No 415
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.89 E-value=0.022 Score=46.87 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+++|.+|+|||||++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4778999999999999999866
No 416
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.88 E-value=0.086 Score=47.72 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=58.0
Q ss_pred ccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCC
Q 048347 21 LDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLS 98 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~ 98 (351)
.|..++..+....+.... ..+|.|.|..|.||||+++.+.+. +...-..++-+.-. +....+ .|+..
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~~-----~q~~v-- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPGI-----NQVQV-- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCCc-----eEEEe--
Confidence 454444444333333322 357889999999999999988766 43221122222211 111100 01111
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCChhhHHHHHhh
Q 048347 99 ALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDIWDFLKEA 143 (351)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 143 (351)
.........+.++..|+...=.++++++.+.+....+...
T Consensus 131 -----~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 131 -----NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred -----CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 1111123566777778877888999999887655444333
No 417
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.87 E-value=0.046 Score=48.43 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAI 90 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i 90 (351)
++-.++.|.|..|+||||||.++.... .+.. ..+++++..-+..++.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCCCHHHHHHHH
Confidence 445699999999999999987665542 2232 3445665335556666665
No 418
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.86 E-value=0.015 Score=56.28 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
++.+.+|..|++ ..-.++.+...+..+++|++|++++| .++.+. .+..+..|+.|++.+| .+..++ ++..+.+|
T Consensus 91 l~~~~~l~~l~l--~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDL--YDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSL 164 (414)
T ss_pred cccccceeeeec--cccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccC-cchhcc-CCccchhh
Confidence 344444555555 22222222222344455555555554 344444 2444444555555442 233222 23334444
Q ss_pred CEEEecCC
Q 048347 318 RKLESWWP 325 (351)
Q Consensus 318 ~~L~l~~~ 325 (351)
+.+++++.
T Consensus 165 ~~l~l~~n 172 (414)
T KOG0531|consen 165 KLLDLSYN 172 (414)
T ss_pred hcccCCcc
Confidence 44444443
No 419
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.86 E-value=0.027 Score=47.94 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.|.|+|+.|+||+|+++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 367889999999999999999888
No 420
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.83 E-value=0.026 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 421
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.81 E-value=0.07 Score=51.70 Aligned_cols=91 Identities=11% Similarity=0.163 Sum_probs=49.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHH----
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFE---- 109 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~---- 109 (351)
+-.+++|.|..|+|||||++.+....+ . +....+-+. -.+.++...+...-...... ..-+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~--~--d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ--C--DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--C--CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987732 2 222222223 55555555554332111000 000111111
Q ss_pred -HHHHHHHHhc--CCceEEEEEeCCCCh
Q 048347 110 -MKKNTLHNYL--KNKRYLIVIQDVWRG 134 (351)
Q Consensus 110 -~~~~~l~~~L--~~k~~LlVLDdv~~~ 134 (351)
...-.+.+++ ++++.|+++|++-..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1122233333 489999999999443
No 422
>PRK14527 adenylate kinase; Provisional
Probab=94.81 E-value=0.021 Score=48.91 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
+..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998763
No 423
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.80 E-value=0.024 Score=48.03 Aligned_cols=23 Identities=4% Similarity=-0.000 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+||||+++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999987
No 424
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.03 Score=46.39 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=33.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSAL 100 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~ 100 (351)
.+++.|+|.+|+||||+.+.+-.. . -+... .+.-++.-+++..-+.....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~--l--~~~~i------vNyG~~Mle~A~k~glve~r 53 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE--L--VKHKI------VNYGDLMLEIAKKKGLVEHR 53 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH--H--hhcee------eeHhHHHHHHHHHhCCcccH
Confidence 579999999999999998887666 2 11111 24456666777766665443
No 425
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.77 E-value=0.032 Score=45.65 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+++|..|+|||||++++...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998765
No 426
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.071 Score=52.85 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=59.3
Q ss_pred CCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCH
Q 048347 15 WDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSL 83 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 83 (351)
+.-.++.|.++..+.+.+.+... -...+.+-++|+.|.|||+||+++.+. ...+|-.+.. +
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~----~-- 310 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKG----S-- 310 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeC----H--
Confidence 33344566677766666655321 123557889999999999999999996 4444422211 0
Q ss_pred HHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 84 DMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 84 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
++...- -...+..+.+.+....+...+.+.+|+++.
T Consensus 311 -----~l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 311 -----ELLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred -----HHhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 111111 122344555666666678899999999963
No 427
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.73 E-value=0.074 Score=54.50 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++|.+....++.+.+..-...-.-|-|+|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45889888888877777543323334669999999999999999987
No 428
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.73 E-value=0.065 Score=50.74 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=45.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccc----ccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYV----KNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
.+=+-|||.-|.|||.|+-..|+...+ +-||+. +..++-+.+..-.. .... ...+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~------------Fm~~vh~~l~~~~~----~~~~----l~~va 121 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE------------FMLDVHSRLHQLRG----QDDP----LPQVA 121 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccccH------------HHHHHHHHHHHHhC----CCcc----HHHHH
Confidence 445778999999999999999998443 223433 33333333322111 1112 44455
Q ss_pred HhcCCceEEEEEeCCCCh
Q 048347 117 NYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 117 ~~L~~k~~LlVLDdv~~~ 134 (351)
+.+.++..+|++|.+.=.
T Consensus 122 ~~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVT 139 (362)
T ss_pred HHHHhcCCEEEEeeeecc
Confidence 666677779999988533
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.73 E-value=0.047 Score=46.61 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCC
Q 048347 25 DKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEIL 104 (351)
Q Consensus 25 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~ 104 (351)
++..++....... -..+.|.|..|+||||+++.+..- +..... .+-+ . +..++...-...+..........
T Consensus 12 ~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~--i~~~~~-~i~i--e-d~~E~~~~~~~~~~~~~~~~~~~ 82 (186)
T cd01130 12 PLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAF--IPPDER-IITI--E-DTAELQLPHPNWVRLVTRPGNVE 82 (186)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhh--cCCCCC-EEEE--C-CccccCCCCCCEEEEEEecCCCC
Confidence 3444444444433 358899999999999999998876 332221 1111 1 11110000000000000000001
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEeCCCChhhHHHHHhh
Q 048347 105 DNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDIWDFLKEA 143 (351)
Q Consensus 105 ~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 143 (351)
........+.++..++..+=.++++.+.+.+.+..+...
T Consensus 83 ~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 83 GSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred CCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 112234556667777777778899999988877755543
No 430
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.71 E-value=0.026 Score=45.83 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
+.|-++|..|+|||||++.+-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467789999999999999997763
No 431
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.71 E-value=0.027 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+|+|.+|+|||||++++.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999998776
No 432
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.71 E-value=0.022 Score=51.82 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|+|.|-||+||||+|..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 46889999999999988777655
No 433
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.70 E-value=0.018 Score=56.58 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=58.1
Q ss_pred CCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccCh-hhhcCCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPE-ELWRIKALR 318 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~L~ 318 (351)
..+|..|+| .++.-..--..++..++.||+|||+.| .+.++|.. +..=.++++|+|++ ..+..+-. .+..|.+|-
T Consensus 124 sghl~~L~L-~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 124 SGHLEKLDL-RHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLL 200 (873)
T ss_pred ccceeEEee-eccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecc-ccccccccccccccchhe
Confidence 345777777 333222112234667777888888887 67777764 55556788888887 45655543 245677888
Q ss_pred EEEecCCC-----hhHHhhccccccCc
Q 048347 319 KLESWWPR-----PELRQSLHKFEEID 340 (351)
Q Consensus 319 ~L~l~~~~-----~~~~~~l~~~~~~~ 340 (351)
+|.++.-. .-...++.+++.++
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhh
Confidence 88887633 22233455555443
No 434
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.18 Score=51.32 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=62.0
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc---------C-CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-C
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER---------Q-PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-L 81 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~ 81 (351)
|.+.=+++=|.|+-+.+|.+-+.-. + .+.+=|-.+|+.|.|||.+||+|+.. .+ ..|++|- +
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH
Confidence 3333345567888888888777431 1 22344668999999999999999887 22 2345543 2
Q ss_pred CHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh
Q 048347 82 SLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
. ++.- .+ ..+++...+...+.=..+.|.|.+|.+++.
T Consensus 740 E---LLNM---YV----------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 E---LLNM---YV----------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred H---HHHH---Hh----------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1 1111 11 123445555555555678999999999644
No 435
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.69 E-value=0.025 Score=48.76 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999876
No 436
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.69 E-value=0.024 Score=47.26 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999876
No 437
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.67 E-value=0.04 Score=49.93 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++..+.....+..||||.|.+|+||+||...+-..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 34566666666667889999999999999999887666
No 438
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.67 E-value=0.028 Score=51.07 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=24.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
++|+|+|.+|+|||||+.++... .+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~--L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR--LSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhCC
Confidence 58999999999999999999888 55554
No 439
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.67 E-value=0.32 Score=43.19 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=58.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (351)
+-.++.|.|.-|+|||.+++..... ..+. .++=|.+. .....+...|+.++..+... .-.....++...+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~--~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNED--QVAVVVIDKPTLSDATLLEAIVADLESQPKV--NVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCCC--ceEEEEecCcchhHHHHHHHHHHHhccCccc--hhHHHHHHHHHHHH
Confidence 4568889999999999999955433 1111 12224444 77788999999999884320 01112222333333
Q ss_pred Hhc-CCce-EEEEEeCCCCh--hhHHHHHh
Q 048347 117 NYL-KNKR-YLIVIQDVWRG--DIWDFLKE 142 (351)
Q Consensus 117 ~~L-~~k~-~LlVLDdv~~~--~~~~~l~~ 142 (351)
... ++++ ..+++|+.... +..+.++-
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrl 153 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRL 153 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHH
Confidence 333 5677 88888988644 44554443
No 440
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.075 Score=51.42 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-..++|.|..|+|||||++.+...
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 467899999999999999999877
No 441
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.64 E-value=0.028 Score=48.93 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.++.-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999765
No 442
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.12 Score=51.58 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=37.5
Q ss_pred CCCccccchhhHHHHHHHHH---ccC-------CCeEEEEEEcCCCChHHHHHHHHhCCccc
Q 048347 16 DNKVDLDLEDKMEELLDLLI---ERQ-------PQLSLVAIIDTMGFDRTAFIGEAYNSSYV 67 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 67 (351)
.-.++-|.|+.++++.+.+. +.. .=.+=|..+|+.|.|||.||+++.....+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 33567799888888766663 221 11344778899999999999999999544
No 443
>PLN02796 D-glycerate 3-kinase
Probab=94.63 E-value=0.071 Score=49.79 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.-+|+|.|..|+||||||+.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999999999887
No 444
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.62 E-value=0.031 Score=53.73 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=35.7
Q ss_pred CCccccchhhHHHHHHHHH-------c---cC--C----CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLI-------E---RQ--P----QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..++|.++-++.+...+. . .. + .-..+.++|+.|+|||++|+.+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 4568999999988866552 1 11 1 1246889999999999999999876
No 445
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.62 E-value=0.16 Score=50.65 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=58.9
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCC-------
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSA------- 99 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~------- 99 (351)
...|-++|..+=++-.++.|.|..|+|||+||.++... ....-+.++|++..-+..++.+.+ ..++-+..
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~~~~i~~~~-~~~g~~~~~~~~~g~ 335 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEESRAQLIRNA-RSWGIDLEKMEEKGL 335 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCCHHHHHHHH-HHcCCChHHHhhcCC
Confidence 34455555334355678889999999999999998766 333446678887664455555443 34432110
Q ss_pred --C--ccCCCCCHHHHHHHHHHhcCC-ceEEEEEeCC
Q 048347 100 --L--SEILDNDFEMKKNTLHNYLKN-KRYLIVIQDV 131 (351)
Q Consensus 100 --~--~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv 131 (351)
. ........+.....+.+.++. +.-++|+|.+
T Consensus 336 l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 336 LKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0 001222344555555555533 3346778877
No 446
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.62 E-value=0.032 Score=46.40 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+|..|+|||||++++...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999877
No 447
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.61 E-value=0.0037 Score=62.67 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=45.9
Q ss_pred CCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
.-++.|+.|+|++|.+.. .. .+..+++|+.|||++| .+..+|.--..=.+|+.|.+++ +.++.| .+|.+|++|+
T Consensus 184 qll~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn-N~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN-NALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHHhhhhccchhhhhh--hH-HHHhcccccccccccc-hhccccccchhhhhheeeeecc-cHHHhh-hhHHhhhhhh
Confidence 345677777775443322 11 3556666777777776 5666664211123477777776 345544 3667777777
Q ss_pred EEEecC
Q 048347 319 KLESWW 324 (351)
Q Consensus 319 ~L~l~~ 324 (351)
.||++.
T Consensus 258 ~LDlsy 263 (1096)
T KOG1859|consen 258 GLDLSY 263 (1096)
T ss_pred ccchhH
Confidence 777654
No 448
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.60 E-value=0.05 Score=47.54 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=16.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..|+|++|.||||++..+...
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 7888999999999877666555
No 449
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.59 E-value=0.027 Score=41.70 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999998877
No 450
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.59 E-value=0.019 Score=46.47 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 21 LDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
||.....+++.+.+..-.....-|-|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 566677777777775432334556789999999999999998873
No 451
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.58 E-value=0.1 Score=51.40 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=31.6
Q ss_pred CccccchhhHHHHHHHHHc--------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIE--------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++-|.+.-++.+.+.... +-+..+-|-++|+.|.|||.+|+.+.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4466766655555442211 1123345778999999999999999887
No 452
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.58 E-value=0.14 Score=47.62 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=42.5
Q ss_pred CCccccchhhHHH---HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe
Q 048347 17 NKVDLDLEDKMEE---LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC 73 (351)
Q Consensus 17 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 73 (351)
.+.+||-.+.++. +++++.++--.-+-|-++|+.|.|||+||-.+....--.-.|-.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 4568998777776 57777666444578889999999999999999888444445533
No 453
>PRK05922 type III secretion system ATPase; Validated
Probab=94.56 E-value=0.13 Score=49.65 Aligned_cols=96 Identities=9% Similarity=0.133 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCCHHH----
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDNDFEM---- 110 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~---- 110 (351)
-..++|.|..|+|||||.+.+... ... +....+-++ ..+.+++.+.......+... ..-+......
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~--~~~--d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG--SKS--TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc--CCC--CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999877 222 233333333 44455555554333221110 0001111111
Q ss_pred -HHHHHHHhc--CCceEEEEEeCCCCh-hhHHHH
Q 048347 111 -KKNTLHNYL--KNKRYLIVIQDVWRG-DIWDFL 140 (351)
Q Consensus 111 -~~~~l~~~L--~~k~~LlVLDdv~~~-~~~~~l 140 (351)
..-.+.+++ ++++.|+++||+-.. .+...+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REi 266 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEV 266 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 112233333 489999999999433 333444
No 454
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.56 E-value=0.056 Score=45.92 Aligned_cols=25 Identities=4% Similarity=0.056 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|+|+|.+|+|||||++.+...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455689999999999999999875
No 455
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.55 E-value=0.03 Score=46.16 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhCCc
Q 048347 44 VAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~~ 65 (351)
|.++|.+|+|||||+.++.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6789999999999999998763
No 456
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.55 E-value=0.13 Score=43.28 Aligned_cols=82 Identities=9% Similarity=-0.059 Sum_probs=44.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
++.|.|..|+||||+|..+... ... ...++.-. ....+..+.|..+.......-. ......++.+.+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~-t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFDDEMAARIAHHRQRRPAHWQ-TVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCChHHHHHHHHHHHhcCCCCCe-EecccccHHHHHHhhcCC
Confidence 5789999999999999998766 211 12222222 4455666666655443211100 111122344445443433
Q ss_pred ceEEEEEeCC
Q 048347 122 KRYLIVIQDV 131 (351)
Q Consensus 122 k~~LlVLDdv 131 (351)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 336888887
No 457
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.55 E-value=0.026 Score=47.36 Aligned_cols=23 Identities=9% Similarity=0.067 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|.|+|+.|+||||+|+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999887
No 458
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.55 E-value=0.03 Score=48.99 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999765
No 459
>PRK08356 hypothetical protein; Provisional
Probab=94.54 E-value=0.037 Score=47.64 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHh
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAY 62 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~ 62 (351)
..+|+|.|+.|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999993
No 460
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.53 E-value=0.083 Score=46.19 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.+++.|.|+-|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47888999999999999999874
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.031 Score=47.27 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999866
No 462
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.53 E-value=0.092 Score=50.91 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=52.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC--ccCCCCC-HHH----
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL--SEILDND-FEM---- 110 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~--~~~~~~~-~~~---- 110 (351)
..++|.|..|+|||||+..+... .... =..++++-+. -.+.+++.++...=..+... -.....+ ...
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56889999999999999998766 3222 1345555554 66677777775432111100 0001111 111
Q ss_pred -HHHHHHHhc---CCceEEEEEeCCCC
Q 048347 111 -KKNTLHNYL---KNKRYLIVIQDVWR 133 (351)
Q Consensus 111 -~~~~l~~~L---~~k~~LlVLDdv~~ 133 (351)
..-.+.+++ ++++.|+++|++-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 123445555 46899999999943
No 463
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.52 E-value=0.023 Score=54.51 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++.|+|+|..|+||||||+++...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999876
No 464
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.52 E-value=0.029 Score=51.20 Aligned_cols=23 Identities=4% Similarity=0.081 Sum_probs=19.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|+|+|-||+||||+|..+..-
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57889999999999988776555
No 465
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.52 E-value=0.08 Score=51.42 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-..++|.|..|+|||||++.+...
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999887
No 466
>PRK04328 hypothetical protein; Provisional
Probab=94.51 E-value=0.1 Score=46.74 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=37.8
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHH
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLD 88 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 88 (351)
.|-++|..+=++-+++-|.|.+|+|||+||.++.... . ..-+.++|++..-+..++.+
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCHHHHHH
Confidence 3444444443556788899999999999998865551 2 23456778876644444433
No 467
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.51 E-value=0.028 Score=49.00 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|+|.|-||+||||++..+..-
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~ 23 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAA 23 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHH
Confidence 46889999999999988776555
No 468
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.50 E-value=0.12 Score=50.61 Aligned_cols=90 Identities=10% Similarity=0.026 Sum_probs=49.5
Q ss_pred EEEEEEcCCCChHHHHH-HHHhCCcccc-----cCCCeeEEEEEe---CCHHHHHHHHHHHhC-CCCCC----cc-----
Q 048347 42 SLVAIIDTMGFDRTAFI-GEAYNSSYVK-----NYFDCCAWVYYQ---LSLDMMLDAIMKSLM-PLSAL----SE----- 102 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~---~~~~~~~~~i~~~~~-~~~~~----~~----- 102 (351)
..++|.|-.|+|||+|| ..+.+...+. ++-..++++-++ -++.++.+.+- +-+ .+... ..
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~-e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLR-SYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHH-hcCCccceEEEEECCCCCHH
Confidence 56889999999999997 6677764221 233455666666 44444333332 222 11000 00
Q ss_pred ---CCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh
Q 048347 103 ---ILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 103 ---~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
......-.+.+.+++ +++..|+|+||+-..
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchHH
Confidence 011122233444443 489999999999543
No 469
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.034 Score=48.52 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+ .+++|+|..|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 45 89999999999999999999765
No 470
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.50 E-value=0.028 Score=50.79 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|+|.|-||+||||+|..+..-
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH
Confidence 57888899999999998887666
No 471
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.50 E-value=0.028 Score=51.05 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|+|.|-||+||||+|..+..-
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~ 24 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAA 24 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57888899999999988777554
No 472
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.49 E-value=0.041 Score=54.55 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=42.6
Q ss_pred CccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEE
Q 048347 18 KVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWV 77 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 77 (351)
++++--...++++..||... ....+++.+.|++|+||||.++.+++. . .|+.+-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEec
Confidence 44555667889999999753 334678999999999999999999887 2 35555564
No 473
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.47 E-value=0.031 Score=48.78 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999765
No 474
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.47 E-value=0.031 Score=46.09 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|+|.+|+|||||++++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999999999765
No 475
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.46 E-value=0.036 Score=51.09 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+++++.|-||+||||+|..+..-
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~ 29 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAA 29 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHH
Confidence 35799999999999999977666544
No 476
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.46 E-value=0.12 Score=40.61 Aligned_cols=52 Identities=6% Similarity=-0.195 Sum_probs=31.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHh
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSL 94 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~ 94 (351)
.+.|.|..|.|||+.+...............++++.-. .-..+....+....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~ 54 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELF 54 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHh
Confidence 35688999999999988876663332334455666544 33334444444444
No 477
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.45 E-value=0.035 Score=46.11 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|++|+|+.|+|||||..++...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 479999999999999999999877
No 478
>PLN02200 adenylate kinase family protein
Probab=94.45 E-value=0.034 Score=49.41 Aligned_cols=25 Identities=4% Similarity=0.018 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+|.|.|+.|+||||+|+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999776
No 479
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.14 Score=46.25 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHHcc--------C---CCeEEEEEEcCCCChHHHHHHHHhCCcccccCC
Q 048347 18 KVDLDLEDKMEELLDLLIER--------Q---PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF 71 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~--------~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 71 (351)
.++=|.|..+++|.+.+.-. + ...+=|.++|..|.|||.||++|+|. ....|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq--TSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ--TSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc--cchhh
Confidence 34557899999998877422 0 22344668999999999999999999 54444
No 480
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.052 Score=50.42 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDA 89 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~ 89 (351)
.+++.+.|.||+||||+|.+..-. .........=|+.. .+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 478889999999999999885544 33333334445444 555554443
No 481
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.44 E-value=0.034 Score=44.78 Aligned_cols=23 Identities=4% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCc
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
.|+++|..|+|||||+.++....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998874
No 482
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.43 E-value=0.031 Score=48.89 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+|.|-||+||||+|..+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~ 23 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR 23 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH
Confidence 6899999999999999885555
No 483
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.43 E-value=0.039 Score=45.32 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4788999999999999998766
No 484
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.43 E-value=0.11 Score=51.96 Aligned_cols=51 Identities=12% Similarity=-0.029 Sum_probs=41.0
Q ss_pred CCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....+.++|.....+++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 345678999999999998888654333445669999999999999999987
No 485
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.43 E-value=0.034 Score=48.08 Aligned_cols=24 Identities=4% Similarity=0.147 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|||.|+.|+||||.|+.+-+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 468999999999999999988663
No 486
>PRK05973 replicative DNA helicase; Provisional
Probab=94.42 E-value=0.12 Score=45.96 Aligned_cols=51 Identities=12% Similarity=-0.042 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
++-.++.|.|.+|+|||+||.++... .-.+-+.+++++...+..++...+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 34567888999999999999988665 2223345666666555666666653
No 487
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.42 E-value=0.26 Score=44.64 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=54.1
Q ss_pred EEEEEEcCCCChHHHHH-HHHhCCcccccCCCee-EEEEEe---CCHHHHHHHHHHHhCCCCCC---ccCCCCC------
Q 048347 42 SLVAIIDTMGFDRTAFI-GEAYNSSYVKNYFDCC-AWVYYQ---LSLDMMLDAIMKSLMPLSAL---SEILDND------ 107 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~---~~~~~~~~~i~~~~~~~~~~---~~~~~~~------ 107 (351)
..++|.|..|+|||+|| ..+.+. .. -+.+ +++-+. -.+.++..++...-..+... ...+...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~~--~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--KG--KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--cC--CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46889999999999996 666655 22 2333 344334 55556666665432111000 0001111
Q ss_pred ---HHHHHHHHHHhcCCceEEEEEeCCCCh-hhHHHHHhhc
Q 048347 108 ---FEMKKNTLHNYLKNKRYLIVIQDVWRG-DIWDFLKEAL 144 (351)
Q Consensus 108 ---~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~~~l~~~l 144 (351)
.-.+.+.+++ +++..|+++||+-.. +++..+...+
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 1223444444 489999999999544 5566665444
No 488
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.41 E-value=0.039 Score=46.00 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|+|+|..|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456889999999999999999876
No 489
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.40 E-value=0.032 Score=46.37 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 048347 44 VAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 44 v~I~G~gGiGKTtLa~~v~~~ 64 (351)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999866
No 490
>PRK06761 hypothetical protein; Provisional
Probab=94.39 E-value=0.049 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
++|.|.|+.|+||||+|+.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999883
No 491
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.39 E-value=0.035 Score=47.49 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|.|..|+|||||++.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998765
No 492
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.38 E-value=0.036 Score=46.95 Aligned_cols=100 Identities=7% Similarity=-0.110 Sum_probs=54.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEE---EeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVY---YQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHN 117 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (351)
-.+++|+|..|+|||||++.+..- .+. ....+++. +++.. +.. .....+...-.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p-~~G~i~~~g~~i~~~~-------------q~~----~LSgGq~qrv~lar 84 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ--LIP-NGDNDEWDGITPVYKP-------------QYI----DLSGGELQRVAIAA 84 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC--CCC-CCcEEEECCEEEEEEc-------------ccC----CCCHHHHHHHHHHH
Confidence 458999999999999999999876 222 22222221 11000 000 01223334455566
Q ss_pred hcCCceEEEEEeCCCCh---hhHHHHHhhcCC-CCC-CcEEEE-Eeecc
Q 048347 118 YLKNKRYLIVIQDVWRG---DIWDFLKEALPD-HQN-GSRILT-ALIHI 160 (351)
Q Consensus 118 ~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~-gs~Iiv-TR~~~ 160 (351)
.+..+.-++++|+--.. .....+...+.. ... +..||+ |.+..
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 67677788889987533 223333333321 112 245666 77654
No 493
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.38 E-value=0.033 Score=47.71 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887
No 494
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.38 E-value=0.12 Score=49.96 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCC--CccCCCCCH--H----HH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSA--LSEILDNDF--E----MK 111 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~--~~~~~~~~~--~----~~ 111 (351)
-..++|.|..|+|||||++.++... +.....++.+--. ..+.+++...+..-+.... .......+. . ..
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~--~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~ 233 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNA--KADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL 233 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC--CCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999998873 2221111111111 6777777766555322110 000011111 1 11
Q ss_pred HHHHHHhc--CCceEEEEEeCCCCh-hhHHHHHhh
Q 048347 112 KNTLHNYL--KNKRYLIVIQDVWRG-DIWDFLKEA 143 (351)
Q Consensus 112 ~~~l~~~L--~~k~~LlVLDdv~~~-~~~~~l~~~ 143 (351)
...+.+++ ++++.|+++|++-.. +....+...
T Consensus 234 a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~ 268 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIA 268 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHH
Confidence 22233333 479999999999544 344444433
No 495
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.37 E-value=0.068 Score=53.75 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=35.6
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....+-|.+-.+.|.+......++-.+|.+.|+.|+||||+|+.++..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHH
Confidence 344566666666666655444455668889999999999999999987
No 496
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.37 E-value=0.047 Score=50.36 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=51.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCC-eeEEEEEeCCHHHHHHHHHHHhCCCCCC-ccCCCCCHHHHHHHHHHhc
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD-CCAWVYYQLSLDMMLDAIMKSLMPLSAL-SEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L 119 (351)
+-+.|.|..|+||||+++.+... +....+ .++ +++. +..++. +..+... .+... ......+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~--i~~~~~~~ri-~tiE-d~~El~------~~~~~~v~~~~~~-~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAE--IAKNDPTDRV-VIIE-DTRELQ------CAAPNVVQLRTSD-DAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--hhccCCCceE-EEEC-Cchhhc------CCCCCEEEEEecC-CCCCHHHHHHHHh
Confidence 35669999999999999999877 433221 122 2222 111111 0011000 00000 1115667778888
Q ss_pred CCceEEEEEeCCCChhhHHHHHh
Q 048347 120 KNKRYLIVIQDVWRGDIWDFLKE 142 (351)
Q Consensus 120 ~~k~~LlVLDdv~~~~~~~~l~~ 142 (351)
+...=-+|+..+.+.+.+..+..
T Consensus 202 R~~pD~iivGEiR~~ea~~~l~a 224 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLLKA 224 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHHHH
Confidence 88888889999998887765433
No 497
>PRK13695 putative NTPase; Provisional
Probab=94.37 E-value=0.035 Score=46.74 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.|..|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998877
No 498
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.057 Score=43.86 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.=|-|.|.+|+||||||.++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 34668899999999999999865
No 499
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.35 E-value=0.066 Score=42.38 Aligned_cols=47 Identities=4% Similarity=-0.047 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHHHHHc----c-CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIE----R-QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|-.--.+.+.+.+.. . +++.-|++.+|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4567766555666555532 2 467889999999999999977776555
No 500
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.34 E-value=0.031 Score=51.71 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++-+.|-||+||||+|....-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~ 24 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA 24 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH
Confidence 57888999999999999776554
Done!