Query 048347
Match_columns 351
No_of_seqs 188 out of 2730
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.7E-28 2E-32 239.6 19.2 195 21-226 131-448 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 8.9E-23 3E-27 219.5 17.4 201 12-226 118-429 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1.8E-23 6.1E-28 214.1 9.0 192 19-224 129-420 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 3.8E-20 1.3E-24 185.0 16.6 142 13-161 119-269 (591)
5 1w5s_A Origin recognition comp 99.2 5.9E-11 2E-15 112.7 10.8 117 13-134 17-150 (412)
6 2qby_A CDC6 homolog 1, cell di 99.0 1.4E-09 4.9E-14 101.8 10.2 143 13-160 15-174 (386)
7 2qby_B CDC6 homolog 3, cell di 99.0 2.3E-09 7.8E-14 100.7 11.5 140 17-159 19-174 (384)
8 2v1u_A Cell division control p 99.0 2.6E-09 8.8E-14 100.2 10.8 117 13-134 14-142 (387)
9 2qen_A Walker-type ATPase; unk 98.9 2.1E-09 7.2E-14 99.4 9.1 136 12-159 6-174 (350)
10 1fnn_A CDC6P, cell division co 98.9 1.3E-08 4.5E-13 95.6 13.8 142 14-160 13-170 (389)
11 2fna_A Conserved hypothetical 98.8 5.9E-09 2E-13 96.5 7.7 136 12-160 7-181 (357)
12 4fcg_A Uncharacterized protein 98.8 8.8E-09 3E-13 95.0 7.2 88 237-326 201-288 (328)
13 4ezg_A Putative uncharacterize 98.7 1.9E-08 6.6E-13 85.5 7.7 89 236-326 82-170 (197)
14 4fcg_A Uncharacterized protein 98.7 2E-08 6.8E-13 92.6 7.4 88 236-324 223-310 (328)
15 2chg_A Replication factor C sm 98.7 7.9E-08 2.7E-12 82.4 10.3 120 17-159 16-142 (226)
16 1njg_A DNA polymerase III subu 98.7 9.3E-08 3.2E-12 83.0 10.4 136 18-159 23-166 (250)
17 3rgz_A Protein brassinosteroid 98.6 3.5E-08 1.2E-12 101.3 6.8 91 234-325 624-714 (768)
18 4ezg_A Putative uncharacterize 98.6 1E-07 3.6E-12 80.9 8.2 89 235-326 59-147 (197)
19 4eco_A Uncharacterized protein 98.6 4.2E-08 1.4E-12 98.6 5.3 67 259-326 198-284 (636)
20 3te6_A Regulatory protein SIR3 98.5 3.5E-07 1.2E-11 83.6 10.4 113 20-135 22-145 (318)
21 1ogq_A PGIP-2, polygalacturona 98.5 6E-08 2E-12 88.7 5.4 89 237-325 71-159 (313)
22 3e6j_A Variable lymphocyte rec 98.5 2.7E-07 9.1E-12 80.4 9.1 83 238-324 84-168 (229)
23 2ell_A Acidic leucine-rich nuc 98.5 2E-07 6.9E-12 76.9 7.9 85 237-326 44-131 (168)
24 2je0_A Acidic leucine-rich nuc 98.5 1.5E-07 5E-12 76.1 6.7 86 236-326 36-124 (149)
25 1dce_A Protein (RAB geranylger 98.5 1.2E-07 4.2E-12 93.9 6.9 87 235-326 456-544 (567)
26 4b8c_D Glucose-repressible alc 98.5 4.5E-08 1.5E-12 99.9 3.5 86 237-326 242-327 (727)
27 4b8c_D Glucose-repressible alc 98.5 6.8E-08 2.3E-12 98.5 4.6 87 236-326 218-304 (727)
28 1a9n_A U2A', U2A'; complex (nu 98.5 2.6E-07 8.9E-12 77.0 7.4 84 238-326 37-124 (176)
29 2r9u_A Variable lymphocyte rec 98.5 2.7E-07 9.1E-12 77.0 7.3 82 241-326 32-116 (174)
30 2ell_A Acidic leucine-rich nuc 98.5 1.1E-07 3.9E-12 78.4 5.0 88 236-326 65-158 (168)
31 1w8a_A SLIT protein; signaling 98.5 2.2E-07 7.5E-12 78.7 6.6 87 238-326 50-137 (192)
32 3e6j_A Variable lymphocyte rec 98.4 5.4E-07 1.9E-11 78.5 8.9 88 235-326 57-146 (229)
33 2v9t_B SLIT homolog 2 protein 98.4 4.3E-07 1.5E-11 78.6 8.0 84 238-324 52-137 (220)
34 1a9n_A U2A', U2A'; complex (nu 98.4 2.1E-07 7E-12 77.6 5.5 90 236-329 58-154 (176)
35 2je0_A Acidic leucine-rich nuc 98.4 4.1E-07 1.4E-11 73.4 7.1 84 240-326 15-99 (149)
36 1sxj_B Activator 1 37 kDa subu 98.4 2.2E-07 7.6E-12 84.8 6.0 116 18-159 21-147 (323)
37 2o6r_A Variable lymphocyte rec 98.4 9.6E-07 3.3E-11 73.4 8.9 87 236-326 46-135 (177)
38 1ogq_A PGIP-2, polygalacturona 98.4 1.8E-07 6E-12 85.6 4.6 92 234-326 93-185 (313)
39 3g39_A Variable lymphocyte rec 98.4 6.7E-07 2.3E-11 74.2 7.3 82 241-326 29-113 (170)
40 4ecn_A Leucine-rich repeat pro 98.4 1.6E-07 5.6E-12 97.3 4.3 67 259-326 440-526 (876)
41 1p9a_G Platelet glycoprotein I 98.4 6.8E-07 2.3E-11 80.8 7.6 82 239-324 74-157 (290)
42 4eco_A Uncharacterized protein 98.3 2E-07 7E-12 93.6 4.2 90 236-326 200-316 (636)
43 2v70_A SLIT-2, SLIT homolog 2 98.3 9.1E-07 3.1E-11 76.5 7.4 86 237-326 76-164 (220)
44 2wfh_A SLIT homolog 2 protein 98.3 8.4E-07 2.9E-11 75.2 7.1 87 236-326 48-137 (193)
45 2v70_A SLIT-2, SLIT homolog 2 98.3 1.1E-06 3.8E-11 76.0 8.0 85 238-326 53-140 (220)
46 3m19_A Variable lymphocyte rec 98.3 1.6E-06 5.5E-11 76.4 8.9 84 238-325 103-189 (251)
47 2o6s_A Variable lymphocyte rec 98.3 1.9E-06 6.6E-11 73.5 8.9 82 239-324 73-157 (208)
48 2o6s_A Variable lymphocyte rec 98.3 2.2E-06 7.4E-11 73.2 9.0 87 236-326 46-135 (208)
49 1iqp_A RFCS; clamp loader, ext 98.3 6.7E-07 2.3E-11 81.7 5.8 118 18-159 25-150 (327)
50 3vq2_A TLR4, TOLL-like recepto 98.3 1.7E-06 5.6E-11 86.0 8.7 89 236-326 74-164 (606)
51 3vq2_A TLR4, TOLL-like recepto 98.3 1.1E-06 3.8E-11 87.3 7.4 87 236-326 50-139 (606)
52 3m19_A Variable lymphocyte rec 98.3 2.7E-06 9.1E-11 74.9 9.1 88 235-326 76-166 (251)
53 1dce_A Protein (RAB geranylger 98.3 1.1E-06 3.6E-11 87.1 7.1 78 243-326 442-519 (567)
54 3rgz_A Protein brassinosteroid 98.3 8.3E-07 2.8E-11 91.1 6.5 86 239-325 463-548 (768)
55 1h6u_A Internalin H; cell adhe 98.3 1.5E-06 5.3E-11 79.1 7.5 81 237-324 58-138 (308)
56 1wwl_A Monocyte differentiatio 98.3 2.4E-06 8.2E-11 77.8 8.8 85 239-326 118-212 (312)
57 4ecn_A Leucine-rich repeat pro 98.2 4.3E-07 1.5E-11 94.1 4.0 91 236-326 442-559 (876)
58 3j0a_A TOLL-like receptor 5; m 98.2 1.8E-06 6.3E-11 89.4 8.7 88 236-325 42-133 (844)
59 4g8a_A TOLL-like receptor 4; l 98.2 1.7E-06 5.9E-11 85.9 8.0 84 237-324 71-157 (635)
60 1ozn_A Reticulon 4 receptor; N 98.2 2.2E-06 7.7E-11 76.8 8.0 86 237-325 75-163 (285)
61 2z7x_B TOLL-like receptor 1, v 98.2 2.2E-06 7.7E-11 83.5 8.6 86 237-326 40-126 (520)
62 1jbk_A CLPB protein; beta barr 98.2 1.4E-06 4.9E-11 72.6 6.3 47 16-64 20-66 (195)
63 3o6n_A APL1; leucine-rich repe 98.2 1.3E-06 4.4E-11 82.1 6.2 87 237-326 243-329 (390)
64 1ozn_A Reticulon 4 receptor; N 98.2 3.3E-06 1.1E-10 75.7 8.6 84 238-325 149-235 (285)
65 3oja_B Anopheles plasmodium-re 98.2 2.1E-06 7.3E-11 85.4 8.0 88 236-326 93-182 (597)
66 3rfs_A Internalin B, repeat mo 98.2 4.1E-06 1.4E-10 74.7 9.0 83 238-324 129-214 (272)
67 3rfs_A Internalin B, repeat mo 98.2 4.3E-06 1.5E-10 74.5 9.1 87 236-326 103-192 (272)
68 2z62_A TOLL-like receptor 4, v 98.2 3.1E-06 1E-10 75.5 8.1 86 237-326 71-160 (276)
69 1h6t_A Internalin B; cell adhe 98.2 3.4E-06 1.2E-10 76.2 8.3 80 238-324 64-143 (291)
70 2o6q_A Variable lymphocyte rec 98.2 4.4E-06 1.5E-10 74.4 8.8 82 239-324 130-214 (270)
71 3v47_A TOLL-like receptor 5B a 98.2 1.9E-06 6.4E-11 82.4 6.8 85 238-325 75-164 (455)
72 2wfh_A SLIT homolog 2 protein 98.2 2.2E-06 7.4E-11 72.6 6.5 82 241-326 30-113 (193)
73 2z63_A TOLL-like receptor 4, v 98.2 3.2E-06 1.1E-10 83.1 8.7 87 236-326 70-160 (570)
74 2v9t_B SLIT homolog 2 protein 98.2 4.8E-06 1.6E-10 72.0 8.8 88 235-326 73-163 (220)
75 3o6n_A APL1; leucine-rich repe 98.2 2.9E-06 1E-10 79.6 8.0 87 236-326 87-176 (390)
76 2z80_A TOLL-like receptor 2, v 98.2 1.9E-06 6.6E-11 79.8 6.5 85 237-325 71-159 (353)
77 2ast_B S-phase kinase-associat 98.2 4.9E-07 1.7E-11 83.0 2.2 90 236-325 87-178 (336)
78 2o6q_A Variable lymphocyte rec 98.2 5.6E-06 1.9E-10 73.7 9.1 85 238-326 81-168 (270)
79 3zyi_A Leucine-rich repeat-con 98.2 2.6E-06 8.7E-11 81.8 7.3 61 263-325 167-228 (452)
80 1p9a_G Platelet glycoprotein I 98.2 5.1E-06 1.7E-10 75.0 8.8 86 236-325 118-205 (290)
81 3oja_B Anopheles plasmodium-re 98.2 1.7E-06 5.7E-11 86.2 6.0 88 236-326 248-335 (597)
82 2xwt_C Thyrotropin receptor; s 98.2 2.8E-06 9.7E-11 74.1 6.7 84 238-325 51-140 (239)
83 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 3.4E-06 1.1E-10 83.2 7.9 85 236-326 70-157 (562)
84 2z66_A Variable lymphocyte rec 98.1 4.1E-06 1.4E-10 75.8 7.9 85 238-324 171-257 (306)
85 1jr3_A DNA polymerase III subu 98.1 5.9E-06 2E-10 76.9 9.0 54 8-64 8-61 (373)
86 4fmz_A Internalin; leucine ric 98.1 4.3E-06 1.5E-10 77.0 8.0 83 236-325 60-142 (347)
87 2ifg_A High affinity nerve gro 98.1 5.1E-06 1.8E-10 76.6 8.5 88 236-326 25-114 (347)
88 3v47_A TOLL-like receptor 5B a 98.1 3.7E-06 1.3E-10 80.4 7.6 85 238-324 295-380 (455)
89 2id5_A Lingo-1, leucine rich r 98.1 3.9E-06 1.3E-10 80.9 7.7 85 238-325 76-162 (477)
90 2z81_A CD282 antigen, TOLL-lik 98.1 2.5E-06 8.7E-11 83.6 6.5 85 237-325 45-133 (549)
91 2z66_A Variable lymphocyte rec 98.1 3.3E-06 1.1E-10 76.5 6.6 89 236-326 144-234 (306)
92 1h6u_A Internalin H; cell adhe 98.1 5.3E-06 1.8E-10 75.5 7.8 82 238-326 125-206 (308)
93 1xeu_A Internalin C; cellular 98.1 5E-06 1.7E-10 73.9 7.5 56 267-326 106-161 (263)
94 1h6t_A Internalin B; cell adhe 98.1 5.5E-06 1.9E-10 74.8 7.7 82 238-326 108-189 (291)
95 1o6v_A Internalin A; bacterial 98.1 5.2E-06 1.8E-10 79.9 8.0 85 235-326 61-145 (466)
96 1m9s_A Internalin B; cell inva 98.1 4E-06 1.4E-10 83.6 7.3 60 263-326 105-164 (605)
97 1xeu_A Internalin C; cellular 98.1 8E-06 2.7E-10 72.6 8.5 58 263-324 124-181 (263)
98 3o53_A Protein LRIM1, AGAP0063 98.1 5.5E-06 1.9E-10 75.6 7.4 82 240-326 167-248 (317)
99 3zyj_A Leucine-rich repeat-con 98.1 4.6E-06 1.6E-10 79.7 7.2 86 237-326 131-218 (440)
100 2z62_A TOLL-like receptor 4, v 98.1 5.6E-06 1.9E-10 73.8 7.3 86 237-326 47-135 (276)
101 2ast_B S-phase kinase-associat 98.1 1.2E-06 4E-11 80.4 2.8 107 237-344 137-254 (336)
102 2xwt_C Thyrotropin receptor; s 98.1 6.7E-06 2.3E-10 71.7 7.6 83 242-326 31-116 (239)
103 2xot_A Amphoterin-induced prot 98.1 5.7E-06 2E-10 77.0 7.5 85 237-325 83-173 (361)
104 2z63_A TOLL-like receptor 4, v 98.1 5.4E-06 1.9E-10 81.5 7.6 85 238-324 441-527 (570)
105 2xot_A Amphoterin-induced prot 98.1 7.2E-06 2.5E-10 76.3 7.9 82 240-325 62-146 (361)
106 2ft3_A Biglycan; proteoglycan, 98.1 9E-06 3.1E-10 74.5 8.4 85 236-326 72-158 (332)
107 1xku_A Decorin; proteoglycan, 98.1 9.4E-06 3.2E-10 74.3 8.4 85 237-326 71-156 (330)
108 3zyi_A Leucine-rich repeat-con 98.1 8E-06 2.7E-10 78.3 8.2 87 237-326 118-207 (452)
109 3j0a_A TOLL-like receptor 5; m 98.1 8.2E-06 2.8E-10 84.6 8.8 86 240-326 22-108 (844)
110 4fmz_A Internalin; leucine ric 98.1 7.2E-06 2.5E-10 75.5 7.6 82 238-325 84-165 (347)
111 1ds9_A Outer arm dynein; leuci 98.0 2.2E-07 7.5E-12 79.0 -2.7 85 237-326 65-151 (198)
112 4g8a_A TOLL-like receptor 4; l 98.0 8.5E-06 2.9E-10 80.8 8.3 85 237-324 489-576 (635)
113 1m9s_A Internalin B; cell inva 98.0 6.8E-06 2.3E-10 81.9 7.5 85 235-326 102-186 (605)
114 1wwl_A Monocyte differentiatio 98.0 4.5E-06 1.6E-10 76.0 5.8 83 241-326 94-184 (312)
115 1w8a_A SLIT protein; signaling 98.0 7.8E-06 2.7E-10 69.0 6.7 81 242-326 29-113 (192)
116 3t6q_A CD180 antigen; protein- 98.0 8.5E-06 2.9E-10 80.9 7.7 84 238-325 77-163 (606)
117 2o6r_A Variable lymphocyte rec 98.0 1.5E-05 5.1E-10 66.1 7.6 82 241-326 27-111 (177)
118 2chq_A Replication factor C sm 98.0 7.5E-06 2.6E-10 74.4 6.2 119 18-159 17-142 (319)
119 3n70_A Transport activator; si 98.0 1.3E-05 4.5E-10 64.4 6.9 46 19-64 2-47 (145)
120 2z80_A TOLL-like receptor 2, v 98.0 1.6E-05 5.4E-10 73.5 8.4 82 241-326 51-135 (353)
121 3t6q_A CD180 antigen; protein- 98.0 1.8E-05 6.3E-10 78.4 9.2 86 237-325 273-360 (606)
122 1xku_A Decorin; proteoglycan, 98.0 1.1E-05 3.7E-10 73.9 7.0 82 242-326 192-274 (330)
123 1ds9_A Outer arm dynein; leuci 97.9 3E-07 1E-11 78.1 -3.6 84 237-326 43-126 (198)
124 2r9u_A Variable lymphocyte rec 97.9 1.4E-05 4.9E-10 66.3 6.7 77 244-326 14-92 (174)
125 2z81_A CD282 antigen, TOLL-lik 97.9 1.5E-05 5.1E-10 78.0 7.6 82 241-326 25-109 (549)
126 3o53_A Protein LRIM1, AGAP0063 97.9 5.9E-06 2E-10 75.4 4.3 86 237-326 139-225 (317)
127 3oja_A Leucine-rich immune mol 97.9 1.5E-05 5.1E-10 77.4 7.4 82 240-326 167-248 (487)
128 1ziw_A TOLL-like receptor 3; i 97.9 5.3E-06 1.8E-10 83.6 4.2 86 238-326 69-156 (680)
129 1ziw_A TOLL-like receptor 3; i 97.9 1.1E-05 3.8E-10 81.2 6.0 87 237-326 92-182 (680)
130 3oja_A Leucine-rich immune mol 97.9 1.1E-05 3.8E-10 78.2 5.6 86 237-326 139-225 (487)
131 2z7x_B TOLL-like receptor 1, v 97.9 2.5E-05 8.4E-10 76.1 7.9 84 238-326 395-479 (520)
132 3bz5_A Internalin-J, INLJ; leu 97.9 2.2E-05 7.5E-10 75.5 7.4 79 237-325 59-137 (457)
133 2id5_A Lingo-1, leucine rich r 97.9 2.8E-05 9.6E-10 74.8 8.0 87 237-326 99-187 (477)
134 3zyj_A Leucine-rich repeat-con 97.8 3.6E-05 1.2E-09 73.5 8.4 89 235-326 200-290 (440)
135 3g39_A Variable lymphocyte rec 97.8 2.9E-05 9.8E-10 64.1 6.7 78 243-326 10-89 (170)
136 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 3.1E-05 1E-09 76.3 7.9 84 238-326 424-508 (562)
137 3h4m_A Proteasome-activating n 97.8 2.5E-05 8.6E-10 69.9 6.6 51 14-64 13-74 (285)
138 2ft3_A Biglycan; proteoglycan, 97.8 1.2E-05 4E-10 73.7 4.5 60 263-324 213-273 (332)
139 3syl_A Protein CBBX; photosynt 97.8 4E-05 1.4E-09 69.4 8.0 46 19-64 32-90 (309)
140 1o6v_A Internalin A; bacterial 97.8 2.1E-05 7.3E-10 75.6 6.3 80 240-326 44-123 (466)
141 4glp_A Monocyte differentiatio 97.8 8E-06 2.7E-10 74.2 3.0 89 236-326 163-262 (310)
142 3ec2_A DNA replication protein 97.8 3.3E-05 1.1E-09 64.2 6.3 91 24-133 20-111 (180)
143 3u61_B DNA polymerase accessor 97.8 5.5E-05 1.9E-09 69.1 8.2 116 17-158 25-145 (324)
144 2w58_A DNAI, primosome compone 97.7 7.2E-05 2.4E-09 63.3 7.5 96 18-133 25-126 (202)
145 2qz4_A Paraplegin; AAA+, SPG7, 97.7 9E-05 3.1E-09 65.2 8.3 49 16-64 4-62 (262)
146 3bz5_A Internalin-J, INLJ; leu 97.7 3.7E-05 1.3E-09 73.9 5.8 82 236-326 36-117 (457)
147 3g06_A SSPH2 (leucine-rich rep 97.7 0.0001 3.5E-09 73.6 9.2 76 241-326 220-295 (622)
148 4glp_A Monocyte differentiatio 97.7 6.4E-05 2.2E-09 68.2 7.0 86 239-326 114-208 (310)
149 1sxj_D Activator 1 41 kDa subu 97.7 3.7E-05 1.3E-09 70.9 5.5 46 17-64 36-81 (353)
150 3uk6_A RUVB-like 2; hexameric 97.6 0.00034 1.2E-08 64.8 11.6 48 17-64 43-93 (368)
151 2p65_A Hypothetical protein PF 97.6 3E-05 1E-09 64.2 3.9 46 17-64 21-66 (187)
152 2ifg_A High affinity nerve gro 97.6 6.6E-05 2.2E-09 69.1 6.5 77 246-326 12-91 (347)
153 3e4g_A ATP synthase subunit S, 97.6 4.7E-05 1.6E-09 63.2 4.9 83 242-326 61-150 (176)
154 1sxj_E Activator 1 40 kDa subu 97.6 0.00015 5.1E-09 66.9 8.9 45 18-64 14-59 (354)
155 2z4s_A Chromosomal replication 97.6 7.9E-05 2.7E-09 71.3 6.5 101 41-158 130-236 (440)
156 3eie_A Vacuolar protein sortin 97.6 0.0002 6.9E-09 65.4 8.9 52 13-64 13-74 (322)
157 3cvr_A Invasion plasmid antige 97.6 9.6E-05 3.3E-09 73.0 7.1 77 240-326 158-241 (571)
158 1jl5_A Outer protein YOPM; leu 97.6 0.00017 5.8E-09 69.2 8.6 56 263-324 149-204 (454)
159 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00082 2.8E-08 61.4 12.7 99 14-134 8-117 (322)
160 1hqc_A RUVB; extended AAA-ATPa 97.5 3.2E-05 1.1E-09 70.5 2.9 48 17-64 11-61 (324)
161 2ca6_A RAN GTPase-activating p 97.5 1.8E-05 6.2E-10 74.1 1.2 88 237-326 211-314 (386)
162 3pvs_A Replication-associated 97.5 0.00013 4.3E-09 70.0 6.7 47 16-64 24-73 (447)
163 1jl5_A Outer protein YOPM; leu 97.5 9.2E-05 3.1E-09 71.1 5.6 88 242-338 317-423 (454)
164 4ay9_X Follicle-stimulating ho 97.5 0.00014 4.7E-09 67.2 6.5 55 269-324 156-211 (350)
165 3cf0_A Transitional endoplasmi 97.5 0.00037 1.3E-08 63.1 8.9 98 14-133 11-119 (301)
166 2ca6_A RAN GTPase-activating p 97.5 5.4E-05 1.8E-09 70.8 3.4 87 239-326 91-198 (386)
167 1sxj_A Activator 1 95 kDa subu 97.5 0.00013 4.6E-09 71.1 6.3 48 17-64 38-100 (516)
168 1d2n_A N-ethylmaleimide-sensit 97.4 0.00066 2.3E-08 60.2 10.2 47 18-64 33-87 (272)
169 3d8b_A Fidgetin-like protein 1 97.4 0.00025 8.5E-09 65.9 7.4 49 16-64 82-140 (357)
170 4ay9_X Follicle-stimulating ho 97.4 0.00021 7.2E-09 65.9 6.9 82 242-325 30-114 (350)
171 1sxj_C Activator 1 40 kDa subu 97.4 0.00039 1.3E-08 63.9 8.3 45 18-64 25-69 (340)
172 3g06_A SSPH2 (leucine-rich rep 97.4 0.00038 1.3E-08 69.5 8.2 58 242-309 61-118 (622)
173 1l8q_A Chromosomal replication 97.3 0.00032 1.1E-08 64.0 6.7 38 27-64 23-60 (324)
174 2zan_A Vacuolar protein sortin 97.3 0.0014 4.8E-08 62.6 11.3 50 15-64 131-190 (444)
175 4fcw_A Chaperone protein CLPB; 97.3 0.00033 1.1E-08 63.3 6.5 47 18-64 17-70 (311)
176 3b9p_A CG5977-PA, isoform A; A 97.3 0.00028 9.6E-09 63.4 6.0 50 15-64 18-77 (297)
177 2qp9_X Vacuolar protein sortin 97.3 0.00097 3.3E-08 61.8 9.3 50 15-64 48-107 (355)
178 3vfd_A Spastin; ATPase, microt 97.3 0.00077 2.6E-08 63.2 8.7 48 17-64 114-171 (389)
179 1ojl_A Transcriptional regulat 97.2 0.00092 3.1E-08 60.6 8.8 47 18-64 2-48 (304)
180 1qvr_A CLPB protein; coiled co 97.2 0.00043 1.5E-08 71.8 7.0 46 17-64 169-214 (854)
181 3cvr_A Invasion plasmid antige 97.2 0.00058 2E-08 67.4 7.0 74 240-326 138-218 (571)
182 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0011 3.8E-08 67.7 9.2 45 18-64 186-230 (758)
183 1lv7_A FTSH; alpha/beta domain 97.1 0.00087 3E-08 58.9 7.0 49 16-64 10-68 (257)
184 2gno_A DNA polymerase III, gam 97.1 0.0025 8.6E-08 57.7 10.0 115 22-159 1-122 (305)
185 3rw6_A Nuclear RNA export fact 97.0 0.00027 9.3E-09 62.7 3.1 85 240-326 168-262 (267)
186 3e4g_A ATP synthase subunit S, 97.0 0.0017 5.8E-08 53.8 7.5 89 259-348 53-150 (176)
187 3co5_A Putative two-component 97.0 0.00019 6.4E-09 57.4 1.5 47 18-64 4-50 (143)
188 2cvh_A DNA repair and recombin 97.0 0.0026 8.7E-08 54.1 8.8 87 40-132 19-115 (220)
189 3pfi_A Holliday junction ATP-d 97.0 0.00031 1.1E-08 64.4 3.1 48 17-64 28-78 (338)
190 1a5t_A Delta prime, HOLB; zinc 96.9 0.0053 1.8E-07 56.2 10.7 128 24-159 8-148 (334)
191 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00051 1.7E-08 62.4 3.6 71 41-134 123-194 (331)
192 2bjv_A PSP operon transcriptio 96.9 0.0016 5.4E-08 57.5 6.6 47 18-64 6-52 (265)
193 4b4t_L 26S protease subunit RP 96.9 0.002 6.7E-08 61.2 7.4 52 13-64 176-238 (437)
194 4b4t_J 26S protease regulatory 96.8 0.0015 5.2E-08 61.2 6.3 48 17-64 147-205 (405)
195 3c8u_A Fructokinase; YP_612366 96.8 0.00091 3.1E-08 56.9 4.4 39 26-64 7-45 (208)
196 3pxg_A Negative regulator of g 96.8 0.00088 3E-08 64.5 4.8 45 18-64 180-224 (468)
197 3bos_A Putative DNA replicatio 96.8 0.0019 6.3E-08 55.6 6.4 60 17-80 27-89 (242)
198 4b4t_H 26S protease regulatory 96.8 0.0022 7.6E-08 61.0 7.0 50 15-64 206-266 (467)
199 4b4t_K 26S protease regulatory 96.8 0.0024 8.1E-08 60.5 7.2 52 13-64 167-229 (428)
200 1rz3_A Hypothetical protein rb 96.8 0.0016 5.5E-08 55.0 5.5 42 23-64 3-45 (201)
201 3hu3_A Transitional endoplasmi 96.7 0.0013 4.4E-08 63.7 5.1 93 18-132 204-307 (489)
202 2p1m_B Transport inhibitor res 96.7 0.00064 2.2E-08 66.9 2.7 84 240-325 128-221 (594)
203 3cf2_A TER ATPase, transitiona 96.7 0.003 1E-07 64.5 7.5 94 18-133 204-308 (806)
204 1in4_A RUVB, holliday junction 96.6 0.0011 3.8E-08 60.8 3.8 47 18-64 25-74 (334)
205 1z7x_W Ribonuclease inhibitor; 96.6 0.00044 1.5E-08 65.9 0.8 86 239-326 25-124 (461)
206 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0034 1.1E-07 53.7 6.3 89 41-132 23-133 (235)
207 4b4t_M 26S protease regulatory 96.6 0.0023 8E-08 60.6 5.6 51 14-64 177-238 (434)
208 1ofh_A ATP-dependent HSL prote 96.6 0.0012 4.1E-08 59.3 3.5 47 18-64 15-73 (310)
209 2ce7_A Cell division protein F 96.6 0.002 6.9E-08 61.9 5.1 47 18-64 16-72 (476)
210 1ypw_A Transitional endoplasmi 96.5 0.0025 8.5E-08 65.5 6.0 47 18-64 204-261 (806)
211 3hr8_A Protein RECA; alpha and 96.5 0.0047 1.6E-07 57.1 7.2 99 27-132 46-149 (356)
212 3kl4_A SRP54, signal recogniti 96.5 0.0057 1.9E-07 58.0 7.9 25 40-64 96-120 (433)
213 1odf_A YGR205W, hypothetical 3 96.5 0.0028 9.6E-08 56.9 5.6 93 26-121 12-117 (290)
214 3rw6_A Nuclear RNA export fact 96.5 0.0032 1.1E-07 55.8 5.6 60 264-326 167-231 (267)
215 3pxi_A Negative regulator of g 96.5 0.0021 7.3E-08 65.6 5.1 46 17-64 179-224 (758)
216 3goz_A Leucine-rich repeat-con 96.5 0.00097 3.3E-08 61.7 2.3 85 239-326 47-149 (362)
217 3e70_C DPA, signal recognition 96.5 0.0074 2.5E-07 55.1 8.1 25 40-64 128-152 (328)
218 1vma_A Cell division protein F 96.4 0.0047 1.6E-07 55.9 6.6 89 40-131 103-195 (306)
219 3lw7_A Adenylate kinase relate 96.4 0.0015 5E-08 53.3 2.8 92 42-145 2-100 (179)
220 3ogk_B Coronatine-insensitive 96.4 0.00096 3.3E-08 65.6 2.0 61 265-326 461-524 (592)
221 2r62_A Cell division protease 96.4 0.0013 4.3E-08 58.1 2.6 49 16-64 9-67 (268)
222 1z7x_W Ribonuclease inhibitor; 96.4 0.00063 2.1E-08 64.8 0.6 83 242-326 313-409 (461)
223 4b4t_I 26S protease regulatory 96.4 0.0051 1.8E-07 57.9 6.5 52 13-64 177-239 (437)
224 2dhr_A FTSH; AAA+ protein, hex 96.3 0.012 4.1E-07 56.9 8.9 51 14-64 27-87 (499)
225 1n0w_A DNA repair protein RAD5 96.3 0.0087 3E-07 51.6 7.3 93 40-133 23-130 (243)
226 1zp6_A Hypothetical protein AT 96.3 0.0025 8.4E-08 53.0 3.6 24 41-64 9-32 (191)
227 3dm5_A SRP54, signal recogniti 96.3 0.0091 3.1E-07 56.7 7.8 25 40-64 99-123 (443)
228 2ra8_A Uncharacterized protein 96.3 0.0023 8E-08 59.4 3.6 95 240-335 217-329 (362)
229 3kb2_A SPBC2 prophage-derived 96.2 0.0022 7.6E-08 52.2 2.9 23 42-64 2-24 (173)
230 2px0_A Flagellar biosynthesis 96.2 0.011 3.8E-07 53.2 7.7 25 40-64 104-128 (296)
231 1qhx_A CPT, protein (chloramph 96.2 0.002 6.9E-08 52.9 2.6 23 42-64 4-26 (178)
232 2p1m_B Transport inhibitor res 96.2 0.0015 5E-08 64.3 1.9 86 240-326 103-195 (594)
233 1uj2_A Uridine-cytidine kinase 96.2 0.0025 8.6E-08 55.9 3.2 26 39-64 20-45 (252)
234 1kgd_A CASK, peripheral plasma 96.2 0.0025 8.4E-08 52.8 2.9 24 41-64 5-28 (180)
235 3vaa_A Shikimate kinase, SK; s 96.2 0.0026 8.9E-08 53.6 3.0 25 40-64 24-48 (199)
236 2z43_A DNA repair and recombin 96.1 0.015 5E-07 53.0 8.2 92 40-132 106-213 (324)
237 1xp8_A RECA protein, recombina 96.1 0.011 3.9E-07 54.8 7.3 99 27-132 59-162 (366)
238 1v5w_A DMC1, meiotic recombina 96.1 0.026 9E-07 51.8 9.7 57 39-96 120-182 (343)
239 1ixz_A ATP-dependent metallopr 96.1 0.0047 1.6E-07 54.0 4.5 48 16-64 14-72 (254)
240 3hws_A ATP-dependent CLP prote 96.1 0.0032 1.1E-07 58.3 3.5 46 19-64 16-74 (363)
241 3uie_A Adenylyl-sulfate kinase 96.1 0.0038 1.3E-07 52.5 3.6 25 40-64 24-48 (200)
242 1ly1_A Polynucleotide kinase; 96.0 0.0037 1.3E-07 51.2 3.4 22 42-63 3-24 (181)
243 2kjq_A DNAA-related protein; s 96.0 0.0023 7.7E-08 51.5 1.9 24 41-64 36-59 (149)
244 2x8a_A Nuclear valosin-contain 96.0 0.0053 1.8E-07 54.6 4.5 49 15-64 7-67 (274)
245 1knq_A Gluconate kinase; ALFA/ 96.0 0.0047 1.6E-07 50.6 3.9 25 40-64 7-31 (175)
246 1iy2_A ATP-dependent metallopr 96.0 0.0055 1.9E-07 54.4 4.5 50 14-64 36-96 (278)
247 3goz_A Leucine-rich repeat-con 96.0 0.0018 6.2E-08 59.8 1.4 82 242-326 80-178 (362)
248 1kag_A SKI, shikimate kinase I 96.0 0.0028 9.5E-08 51.8 2.3 23 42-64 5-27 (173)
249 4gp7_A Metallophosphoesterase; 96.0 0.0039 1.3E-07 51.2 3.2 23 41-63 9-31 (171)
250 2zr9_A Protein RECA, recombina 96.0 0.012 4.2E-07 54.2 6.8 99 27-132 46-149 (349)
251 2bdt_A BH3686; alpha-beta prot 96.0 0.0042 1.4E-07 51.6 3.4 22 42-63 3-24 (189)
252 3ogk_B Coronatine-insensitive 96.0 0.011 3.6E-07 58.1 6.8 84 239-324 240-327 (592)
253 2qt1_A Nicotinamide riboside k 95.9 0.0048 1.7E-07 52.1 3.8 26 39-64 19-44 (207)
254 2r44_A Uncharacterized protein 95.9 0.0048 1.7E-07 56.2 4.0 43 18-64 27-69 (331)
255 2c9o_A RUVB-like 1; hexameric 95.9 0.0066 2.2E-07 58.1 5.0 47 18-64 37-86 (456)
256 3tr0_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 52.4 3.1 23 42-64 8-30 (205)
257 1nks_A Adenylate kinase; therm 95.9 0.0038 1.3E-07 51.7 3.0 23 42-64 2-24 (194)
258 4eun_A Thermoresistant glucoki 95.9 0.0039 1.3E-07 52.5 3.0 25 40-64 28-52 (200)
259 3asz_A Uridine kinase; cytidin 95.9 0.0046 1.6E-07 52.3 3.5 25 40-64 5-29 (211)
260 3un9_A NLR family member X1; l 95.9 0.0025 8.4E-08 59.4 1.8 84 241-326 125-222 (372)
261 3a00_A Guanylate kinase, GMP k 95.9 0.0031 1.1E-07 52.4 2.3 23 42-64 2-24 (186)
262 2xxa_A Signal recognition part 95.9 0.028 9.5E-07 53.4 9.1 38 27-64 79-123 (433)
263 3trf_A Shikimate kinase, SK; a 95.9 0.0041 1.4E-07 51.4 3.0 24 41-64 5-28 (185)
264 1j8m_F SRP54, signal recogniti 95.9 0.022 7.4E-07 51.3 7.9 38 41-80 98-135 (297)
265 3un9_A NLR family member X1; l 95.8 0.0021 7.3E-08 59.9 1.2 85 240-326 153-250 (372)
266 2rhm_A Putative kinase; P-loop 95.8 0.0055 1.9E-07 50.8 3.6 24 41-64 5-28 (193)
267 1uf9_A TT1252 protein; P-loop, 95.8 0.0051 1.7E-07 51.5 3.4 26 39-64 6-31 (203)
268 3tau_A Guanylate kinase, GMP k 95.8 0.0048 1.6E-07 52.4 3.2 24 41-64 8-31 (208)
269 3tqc_A Pantothenate kinase; bi 95.8 0.0097 3.3E-07 54.1 5.4 26 39-64 90-115 (321)
270 2jaq_A Deoxyguanosine kinase; 95.8 0.0039 1.3E-07 52.2 2.5 22 43-64 2-23 (205)
271 3t61_A Gluconokinase; PSI-biol 95.8 0.0034 1.2E-07 52.8 2.2 24 41-64 18-41 (202)
272 2i1q_A DNA repair and recombin 95.8 0.025 8.6E-07 51.3 8.1 93 39-132 96-214 (322)
273 3ice_A Transcription terminati 95.8 0.011 3.7E-07 55.0 5.6 24 41-64 174-197 (422)
274 2j41_A Guanylate kinase; GMP, 95.8 0.0052 1.8E-07 51.6 3.2 24 41-64 6-29 (207)
275 3fwy_A Light-independent proto 95.8 0.0055 1.9E-07 55.7 3.5 26 39-64 46-71 (314)
276 1kht_A Adenylate kinase; phosp 95.8 0.0042 1.4E-07 51.5 2.5 23 42-64 4-26 (192)
277 1zu4_A FTSY; GTPase, signal re 95.7 0.016 5.4E-07 52.7 6.6 39 40-80 104-142 (320)
278 1jjv_A Dephospho-COA kinase; P 95.7 0.0059 2E-07 51.5 3.5 22 42-63 3-24 (206)
279 1sky_E F1-ATPase, F1-ATP synth 95.7 0.016 5.5E-07 55.3 6.7 48 43-92 153-204 (473)
280 1ye8_A Protein THEP1, hypothet 95.7 0.0053 1.8E-07 50.9 2.9 22 43-64 2-23 (178)
281 2ga8_A Hypothetical 39.9 kDa p 95.7 0.012 4.1E-07 54.1 5.5 44 21-64 2-47 (359)
282 3tlx_A Adenylate kinase 2; str 95.7 0.0095 3.2E-07 51.9 4.7 40 25-64 13-52 (243)
283 3p32_A Probable GTPase RV1496/ 95.7 0.012 4.1E-07 54.3 5.6 38 27-64 65-102 (355)
284 1u94_A RECA protein, recombina 95.7 0.016 5.5E-07 53.5 6.4 86 40-132 62-151 (356)
285 1ukz_A Uridylate kinase; trans 95.7 0.007 2.4E-07 50.8 3.7 26 39-64 13-38 (203)
286 3io5_A Recombination and repai 95.7 0.053 1.8E-06 49.0 9.5 83 43-132 30-121 (333)
287 2if2_A Dephospho-COA kinase; a 95.7 0.0058 2E-07 51.4 3.1 22 42-63 2-23 (204)
288 1y63_A LMAJ004144AAA protein; 95.7 0.0054 1.8E-07 50.9 2.9 25 40-64 9-33 (184)
289 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0097 3.3E-07 57.6 5.0 43 18-64 22-64 (500)
290 1xjc_A MOBB protein homolog; s 95.7 0.0059 2E-07 50.2 3.0 25 40-64 3-27 (169)
291 1lvg_A Guanylate kinase, GMP k 95.6 0.0045 1.5E-07 52.1 2.4 23 42-64 5-27 (198)
292 3iij_A Coilin-interacting nucl 95.6 0.0052 1.8E-07 50.6 2.7 24 41-64 11-34 (180)
293 2ze6_A Isopentenyl transferase 95.6 0.0063 2.1E-07 53.4 3.4 23 42-64 2-24 (253)
294 1qvr_A CLPB protein; coiled co 95.6 0.008 2.7E-07 62.2 4.7 46 19-64 559-611 (854)
295 2b8t_A Thymidine kinase; deoxy 95.6 0.0042 1.4E-07 53.5 2.1 110 40-157 11-124 (223)
296 1ex7_A Guanylate kinase; subst 95.6 0.0033 1.1E-07 52.6 1.3 23 42-64 2-24 (186)
297 2yvu_A Probable adenylyl-sulfa 95.6 0.0076 2.6E-07 49.9 3.6 25 40-64 12-36 (186)
298 2hf9_A Probable hydrogenase ni 95.6 0.013 4.5E-07 49.9 5.3 39 24-64 23-61 (226)
299 3bh0_A DNAB-like replicative h 95.6 0.04 1.4E-06 49.9 8.7 53 40-94 67-119 (315)
300 2wsm_A Hydrogenase expression/ 95.6 0.012 4E-07 50.0 4.8 43 20-64 11-53 (221)
301 2qor_A Guanylate kinase; phosp 95.6 0.005 1.7E-07 52.0 2.5 24 41-64 12-35 (204)
302 2c95_A Adenylate kinase 1; tra 95.6 0.0057 1.9E-07 50.9 2.8 24 41-64 9-32 (196)
303 1um8_A ATP-dependent CLP prote 95.6 0.0095 3.2E-07 55.4 4.6 47 18-64 21-95 (376)
304 1ls1_A Signal recognition part 95.6 0.016 5.4E-07 52.1 5.8 25 40-64 97-121 (295)
305 1cke_A CK, MSSA, protein (cyti 95.6 0.0066 2.2E-07 51.9 3.1 23 42-64 6-28 (227)
306 3aez_A Pantothenate kinase; tr 95.6 0.0075 2.6E-07 54.7 3.6 26 39-64 88-113 (312)
307 1znw_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 51.3 3.2 24 41-64 20-43 (207)
308 2bbw_A Adenylate kinase 4, AK4 95.6 0.0064 2.2E-07 52.9 3.1 24 41-64 27-50 (246)
309 1tev_A UMP-CMP kinase; ploop, 95.5 0.0066 2.3E-07 50.3 3.0 24 41-64 3-26 (196)
310 1g8p_A Magnesium-chelatase 38 95.5 0.0062 2.1E-07 55.7 3.0 47 16-64 22-68 (350)
311 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0077 2.6E-07 53.0 3.5 24 41-64 4-27 (260)
312 1zuh_A Shikimate kinase; alpha 95.5 0.0061 2.1E-07 49.6 2.6 25 40-64 6-30 (168)
313 2jeo_A Uridine-cytidine kinase 95.5 0.0084 2.9E-07 52.2 3.6 25 40-64 24-48 (245)
314 2j37_W Signal recognition part 95.5 0.043 1.5E-06 53.0 8.8 25 40-64 100-124 (504)
315 1gvn_B Zeta; postsegregational 95.5 0.015 5E-07 52.1 5.2 26 39-64 31-56 (287)
316 3cm0_A Adenylate kinase; ATP-b 95.5 0.0084 2.9E-07 49.5 3.3 24 41-64 4-27 (186)
317 1htw_A HI0065; nucleotide-bind 95.5 0.0089 3.1E-07 48.5 3.4 25 40-64 32-56 (158)
318 1fx0_B ATP synthase beta chain 95.4 0.019 6.6E-07 54.9 6.1 50 42-93 166-219 (498)
319 2plr_A DTMP kinase, probable t 95.4 0.0079 2.7E-07 50.6 3.2 24 41-64 4-27 (213)
320 1z6g_A Guanylate kinase; struc 95.4 0.0061 2.1E-07 52.2 2.4 24 41-64 23-46 (218)
321 1via_A Shikimate kinase; struc 95.4 0.0063 2.1E-07 49.9 2.3 23 42-64 5-27 (175)
322 2bwj_A Adenylate kinase 5; pho 95.4 0.0069 2.4E-07 50.5 2.6 23 42-64 13-35 (199)
323 3ney_A 55 kDa erythrocyte memb 95.3 0.0083 2.8E-07 50.6 2.9 25 40-64 18-42 (197)
324 4e22_A Cytidylate kinase; P-lo 95.3 0.0086 2.9E-07 52.5 3.2 24 41-64 27-50 (252)
325 2grj_A Dephospho-COA kinase; T 95.3 0.011 3.7E-07 49.7 3.6 26 39-64 10-35 (192)
326 1qf9_A UMP/CMP kinase, protein 95.3 0.0099 3.4E-07 49.1 3.4 24 41-64 6-29 (194)
327 2qgz_A Helicase loader, putati 95.3 0.016 5.6E-07 52.3 5.0 39 26-64 136-175 (308)
328 2pbr_A DTMP kinase, thymidylat 95.3 0.0076 2.6E-07 50.0 2.6 22 43-64 2-23 (195)
329 1sq5_A Pantothenate kinase; P- 95.3 0.02 6.9E-07 51.7 5.6 26 39-64 78-103 (308)
330 1e6c_A Shikimate kinase; phosp 95.3 0.0063 2.2E-07 49.5 2.0 23 42-64 3-25 (173)
331 2pt5_A Shikimate kinase, SK; a 95.3 0.0085 2.9E-07 48.5 2.7 22 43-64 2-23 (168)
332 2iyv_A Shikimate kinase, SK; t 95.3 0.0068 2.3E-07 50.0 2.1 22 43-64 4-25 (184)
333 2f6r_A COA synthase, bifunctio 95.3 0.011 3.8E-07 52.7 3.7 23 40-62 74-96 (281)
334 2vli_A Antibiotic resistance p 95.2 0.0068 2.3E-07 49.8 2.1 24 41-64 5-28 (183)
335 1nn5_A Similar to deoxythymidy 95.2 0.009 3.1E-07 50.5 2.9 24 41-64 9-32 (215)
336 2ck3_D ATP synthase subunit be 95.2 0.015 5.2E-07 55.4 4.6 50 42-93 154-207 (482)
337 2pez_A Bifunctional 3'-phospho 95.2 0.012 4.1E-07 48.3 3.5 25 40-64 4-28 (179)
338 2v54_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 49.7 3.0 24 41-64 4-27 (204)
339 1s96_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 50.9 3.0 25 40-64 15-39 (219)
340 4a74_A DNA repair and recombin 95.2 0.011 3.9E-07 50.3 3.4 24 40-63 24-47 (231)
341 2ehv_A Hypothetical protein PH 95.2 0.01 3.5E-07 51.3 3.1 23 41-63 30-52 (251)
342 4a1f_A DNAB helicase, replicat 95.2 0.054 1.8E-06 49.5 8.0 65 27-94 33-97 (338)
343 2cdn_A Adenylate kinase; phosp 95.2 0.012 4.1E-07 49.3 3.4 25 40-64 19-43 (201)
344 1zd8_A GTP:AMP phosphotransfer 95.2 0.01 3.4E-07 51.0 2.9 24 41-64 7-30 (227)
345 1aky_A Adenylate kinase; ATP:A 95.1 0.0094 3.2E-07 50.8 2.7 24 41-64 4-27 (220)
346 1gtv_A TMK, thymidylate kinase 95.1 0.0052 1.8E-07 52.0 1.1 22 43-64 2-23 (214)
347 1vht_A Dephospho-COA kinase; s 95.1 0.013 4.4E-07 49.8 3.6 23 41-63 4-26 (218)
348 3b85_A Phosphate starvation-in 95.1 0.019 6.4E-07 48.8 4.5 23 42-64 23-45 (208)
349 3t15_A Ribulose bisphosphate c 95.1 0.0084 2.9E-07 53.8 2.4 25 40-64 35-59 (293)
350 1io0_A Tropomodulin; LRR prote 95.1 0.015 5E-07 48.3 3.7 58 267-326 93-162 (185)
351 2f1r_A Molybdopterin-guanine d 95.1 0.0072 2.5E-07 49.7 1.7 23 42-64 3-25 (171)
352 2wwf_A Thymidilate kinase, put 95.1 0.0096 3.3E-07 50.2 2.6 24 41-64 10-33 (212)
353 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.6E-07 49.2 2.8 22 43-64 2-23 (197)
354 2p5t_B PEZT; postsegregational 95.1 0.019 6.6E-07 50.1 4.6 26 39-64 30-55 (253)
355 2onk_A Molybdate/tungstate ABC 95.1 0.012 4E-07 51.3 3.1 25 39-64 23-47 (240)
356 1m7g_A Adenylylsulfate kinase; 95.0 0.015 5.1E-07 49.3 3.7 25 40-64 24-48 (211)
357 3lnc_A Guanylate kinase, GMP k 95.0 0.0077 2.6E-07 51.8 1.8 24 41-64 27-51 (231)
358 3tif_A Uncharacterized ABC tra 95.0 0.013 4.5E-07 50.8 3.1 24 41-64 31-54 (235)
359 1zak_A Adenylate kinase; ATP:A 95.0 0.0097 3.3E-07 50.8 2.3 24 41-64 5-28 (222)
360 1rj9_A FTSY, signal recognitio 94.9 0.013 4.3E-07 53.0 3.1 25 40-64 101-125 (304)
361 2pcj_A ABC transporter, lipopr 94.9 0.013 4.5E-07 50.4 3.0 23 42-64 31-53 (224)
362 1yrb_A ATP(GTP)binding protein 94.9 0.016 5.5E-07 50.6 3.7 26 39-64 12-37 (262)
363 3umf_A Adenylate kinase; rossm 94.9 0.015 5.1E-07 49.8 3.3 26 39-64 27-52 (217)
364 1g41_A Heat shock protein HSLU 94.9 0.012 4.2E-07 55.8 3.0 48 17-64 14-73 (444)
365 1q57_A DNA primase/helicase; d 94.9 0.1 3.5E-06 50.4 9.6 54 40-95 241-295 (503)
366 2i3b_A HCR-ntpase, human cance 94.9 0.012 4.1E-07 49.2 2.5 22 43-64 3-24 (189)
367 3b9q_A Chloroplast SRP recepto 94.8 0.017 5.8E-07 52.1 3.6 25 40-64 99-123 (302)
368 1np6_A Molybdopterin-guanine d 94.8 0.016 5.3E-07 47.9 3.0 24 41-64 6-29 (174)
369 3fb4_A Adenylate kinase; psych 94.8 0.014 4.7E-07 49.5 2.8 22 43-64 2-23 (216)
370 2ffh_A Protein (FFH); SRP54, s 94.8 0.046 1.6E-06 51.6 6.6 25 40-64 97-121 (425)
371 3gfo_A Cobalt import ATP-bindi 94.8 0.015 5.2E-07 51.6 3.1 23 42-64 35-57 (275)
372 1b0u_A Histidine permease; ABC 94.7 0.016 5.4E-07 51.2 3.1 24 41-64 32-55 (262)
373 3sb4_A Hypothetical leucine ri 94.7 0.057 2E-06 48.8 7.0 77 241-323 225-305 (329)
374 2cbz_A Multidrug resistance-as 94.7 0.017 5.7E-07 50.2 3.1 24 41-64 31-54 (237)
375 3lda_A DNA repair protein RAD5 94.7 0.071 2.4E-06 50.0 7.7 56 40-96 177-238 (400)
376 3nwj_A ATSK2; P loop, shikimat 94.7 0.013 4.3E-07 51.4 2.3 23 42-64 49-71 (250)
377 1ji0_A ABC transporter; ATP bi 94.7 0.017 5.8E-07 50.2 3.1 23 42-64 33-55 (240)
378 4g1u_C Hemin import ATP-bindin 94.7 0.016 5.6E-07 51.2 3.1 24 41-64 37-60 (266)
379 3be4_A Adenylate kinase; malar 94.7 0.013 4.3E-07 50.0 2.2 24 41-64 5-28 (217)
380 1g6h_A High-affinity branched- 94.7 0.017 5.9E-07 50.7 3.1 24 41-64 33-56 (257)
381 3d3q_A TRNA delta(2)-isopenten 94.7 0.018 6.3E-07 52.6 3.4 23 42-64 8-30 (340)
382 1mv5_A LMRA, multidrug resista 94.6 0.019 6.5E-07 50.0 3.3 24 41-64 28-51 (243)
383 3dl0_A Adenylate kinase; phosp 94.6 0.018 6.3E-07 48.8 3.2 22 43-64 2-23 (216)
384 3ake_A Cytidylate kinase; CMP 94.6 0.019 6.4E-07 48.1 3.2 22 43-64 4-25 (208)
385 1cr0_A DNA primase/helicase; R 94.6 0.036 1.2E-06 49.5 5.2 53 40-94 34-87 (296)
386 2olj_A Amino acid ABC transpor 94.6 0.018 6.2E-07 50.8 3.1 24 41-64 50-73 (263)
387 2pze_A Cystic fibrosis transme 94.6 0.018 6.3E-07 49.6 3.1 23 42-64 35-57 (229)
388 3a8t_A Adenylate isopentenyltr 94.6 0.024 8.1E-07 51.8 3.9 24 41-64 40-63 (339)
389 2yhs_A FTSY, cell division pro 94.6 0.033 1.1E-06 53.5 5.0 25 40-64 292-316 (503)
390 2d2e_A SUFC protein; ABC-ATPas 94.6 0.019 6.4E-07 50.3 3.2 23 42-64 30-52 (250)
391 3sb4_A Hypothetical leucine ri 94.6 0.093 3.2E-06 47.4 7.9 81 236-322 244-328 (329)
392 2ff7_A Alpha-hemolysin translo 94.6 0.019 6.5E-07 50.2 3.1 23 42-64 36-58 (247)
393 1tue_A Replication protein E1; 94.5 0.027 9.2E-07 47.6 3.9 37 27-64 45-81 (212)
394 1sgw_A Putative ABC transporte 94.5 0.016 5.4E-07 49.5 2.5 23 42-64 36-58 (214)
395 3k1j_A LON protease, ATP-depen 94.5 0.043 1.5E-06 54.4 6.0 43 18-64 41-83 (604)
396 1svm_A Large T antigen; AAA+ f 94.5 0.035 1.2E-06 51.6 5.0 26 39-64 167-192 (377)
397 1nij_A Hypothetical protein YJ 94.5 0.019 6.4E-07 52.2 3.1 25 40-64 3-27 (318)
398 1vpl_A ABC transporter, ATP-bi 94.5 0.019 6.6E-07 50.4 3.1 24 41-64 41-64 (256)
399 2zu0_C Probable ATP-dependent 94.5 0.019 6.6E-07 50.7 3.1 24 41-64 46-69 (267)
400 2vp4_A Deoxynucleoside kinase; 94.5 0.017 5.8E-07 49.7 2.7 26 39-64 18-43 (230)
401 2ra8_A Uncharacterized protein 94.5 0.016 5.4E-07 53.7 2.6 83 239-326 169-263 (362)
402 3pxi_A Negative regulator of g 94.5 0.03 1E-06 57.1 4.9 47 18-64 491-544 (758)
403 2wji_A Ferrous iron transport 94.5 0.029 9.9E-07 45.2 3.9 23 42-64 4-26 (165)
404 2p67_A LAO/AO transport system 94.5 0.043 1.5E-06 50.3 5.5 35 30-64 45-79 (341)
405 2dyk_A GTP-binding protein; GT 94.5 0.023 7.7E-07 45.1 3.2 23 42-64 2-24 (161)
406 2ghi_A Transport protein; mult 94.4 0.021 7E-07 50.3 3.1 24 41-64 46-69 (260)
407 1a7j_A Phosphoribulokinase; tr 94.4 0.0099 3.4E-07 53.3 1.0 25 40-64 4-28 (290)
408 2ixe_A Antigen peptide transpo 94.4 0.021 7.3E-07 50.6 3.1 24 41-64 45-68 (271)
409 2qi9_C Vitamin B12 import ATP- 94.4 0.022 7.4E-07 49.9 3.1 23 42-64 27-49 (249)
410 2yz2_A Putative ABC transporte 94.4 0.022 7.4E-07 50.4 3.1 24 41-64 33-56 (266)
411 3vr4_D V-type sodium ATPase su 94.4 0.018 6.1E-07 54.6 2.7 88 43-132 153-258 (465)
412 1fzq_A ADP-ribosylation factor 94.4 0.032 1.1E-06 45.7 4.0 26 39-64 14-39 (181)
413 2dr3_A UPF0273 protein PH0284; 94.3 0.036 1.2E-06 47.7 4.4 47 41-89 23-69 (247)
414 2og2_A Putative signal recogni 94.3 0.025 8.6E-07 52.2 3.6 25 40-64 156-180 (359)
415 2ihy_A ABC transporter, ATP-bi 94.3 0.022 7.6E-07 50.7 3.1 23 42-64 48-70 (279)
416 2nq2_C Hypothetical ABC transp 94.3 0.022 7.6E-07 49.9 3.0 23 42-64 32-54 (253)
417 3end_A Light-independent proto 94.3 0.025 8.7E-07 50.8 3.5 51 28-80 26-78 (307)
418 2wjg_A FEOB, ferrous iron tran 94.3 0.032 1.1E-06 45.7 3.9 25 40-64 6-30 (188)
419 1e4v_A Adenylate kinase; trans 94.3 0.021 7.2E-07 48.4 2.8 22 43-64 2-23 (214)
420 1oix_A RAS-related protein RAB 94.3 0.026 9E-07 46.8 3.3 25 40-64 28-52 (191)
421 1ak2_A Adenylate kinase isoenz 94.3 0.022 7.5E-07 49.1 2.9 24 41-64 16-39 (233)
422 1io0_A Tropomodulin; LRR prote 94.3 0.016 5.4E-07 48.1 1.9 86 238-326 32-134 (185)
423 2xb4_A Adenylate kinase; ATP-b 94.2 0.022 7.4E-07 48.8 2.7 22 43-64 2-23 (223)
424 2q6t_A DNAB replication FORK h 94.2 0.18 6.3E-06 47.8 9.5 55 39-95 198-253 (444)
425 2zej_A Dardarin, leucine-rich 94.2 0.024 8.3E-07 46.6 3.0 22 43-64 4-25 (184)
426 1q3t_A Cytidylate kinase; nucl 94.2 0.026 8.8E-07 48.7 3.2 26 39-64 14-39 (236)
427 2ocp_A DGK, deoxyguanosine kin 94.2 0.025 8.6E-07 48.9 3.1 24 41-64 2-25 (241)
428 3r20_A Cytidylate kinase; stru 94.2 0.026 8.8E-07 48.9 3.1 24 41-64 9-32 (233)
429 3llm_A ATP-dependent RNA helic 94.2 0.45 1.5E-05 40.7 11.2 91 42-133 77-187 (235)
430 3exa_A TRNA delta(2)-isopenten 94.1 0.026 8.8E-07 51.0 3.1 24 41-64 3-26 (322)
431 1tq4_A IIGP1, interferon-induc 94.1 0.029 1E-06 52.8 3.6 24 40-63 68-91 (413)
432 1ltq_A Polynucleotide kinase; 94.1 0.028 9.7E-07 50.2 3.4 23 42-64 3-25 (301)
433 2qm8_A GTPase/ATPase; G protei 94.1 0.053 1.8E-06 49.6 5.1 35 29-63 43-77 (337)
434 2r6a_A DNAB helicase, replicat 94.0 0.12 3.9E-06 49.4 7.7 51 40-91 202-252 (454)
435 2ged_A SR-beta, signal recogni 94.0 0.045 1.5E-06 45.1 4.2 25 40-64 47-71 (193)
436 3sop_A Neuronal-specific septi 94.0 0.028 9.5E-07 49.8 3.1 22 43-64 4-25 (270)
437 3def_A T7I23.11 protein; chlor 94.0 0.072 2.5E-06 46.7 5.8 37 29-65 24-60 (262)
438 3zvl_A Bifunctional polynucleo 94.0 0.025 8.7E-07 53.4 3.0 26 39-64 256-281 (416)
439 3crm_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 50.8 3.3 23 42-64 6-28 (323)
440 2eyu_A Twitching motility prot 94.0 0.035 1.2E-06 48.9 3.6 25 40-64 24-48 (261)
441 3l0o_A Transcription terminati 94.0 0.025 8.6E-07 52.5 2.7 35 29-64 164-198 (427)
442 2f9l_A RAB11B, member RAS onco 94.0 0.033 1.1E-06 46.3 3.3 24 41-64 5-28 (199)
443 2lkc_A Translation initiation 94.0 0.047 1.6E-06 44.1 4.2 25 40-64 7-31 (178)
444 1cp2_A CP2, nitrogenase iron p 93.9 0.032 1.1E-06 48.9 3.4 37 42-80 2-38 (269)
445 3cf2_A TER ATPase, transitiona 93.9 0.048 1.7E-06 55.6 4.9 99 13-133 472-581 (806)
446 1r6b_X CLPA protein; AAA+, N-t 93.9 0.061 2.1E-06 54.7 5.8 47 18-64 458-511 (758)
447 2ce2_X GTPase HRAS; signaling 93.9 0.028 9.6E-07 44.6 2.6 22 43-64 5-26 (166)
448 1p5z_B DCK, deoxycytidine kina 93.9 0.021 7.3E-07 50.1 2.0 26 39-64 22-47 (263)
449 2pjz_A Hypothetical protein ST 93.9 0.031 1.1E-06 49.3 3.1 23 42-64 31-53 (263)
450 3nh6_A ATP-binding cassette SU 93.9 0.026 8.8E-07 51.0 2.6 24 41-64 80-103 (306)
451 3m6a_A ATP-dependent protease 93.9 0.045 1.5E-06 53.5 4.5 46 19-64 82-131 (543)
452 1h65_A Chloroplast outer envel 93.9 0.081 2.8E-06 46.5 5.8 38 28-65 26-63 (270)
453 1z2a_A RAS-related protein RAB 93.8 0.04 1.4E-06 43.9 3.4 24 41-64 5-28 (168)
454 2afh_E Nitrogenase iron protei 93.8 0.037 1.3E-06 49.2 3.5 24 41-64 2-25 (289)
455 2v9p_A Replication protein E1; 93.8 0.053 1.8E-06 48.8 4.5 26 39-64 124-149 (305)
456 4eaq_A DTMP kinase, thymidylat 93.8 0.037 1.3E-06 47.7 3.3 25 40-64 25-49 (229)
457 3tw8_B RAS-related protein RAB 93.7 0.044 1.5E-06 44.3 3.6 27 39-65 7-33 (181)
458 1nlf_A Regulatory protein REPA 93.7 0.034 1.2E-06 49.2 3.1 24 41-64 30-53 (279)
459 3con_A GTPase NRAS; structural 93.7 0.032 1.1E-06 45.9 2.7 23 42-64 22-44 (190)
460 2v3c_C SRP54, signal recogniti 93.7 0.036 1.2E-06 52.5 3.3 24 41-64 99-122 (432)
461 4hlc_A DTMP kinase, thymidylat 93.7 0.043 1.5E-06 46.4 3.5 30 42-73 3-32 (205)
462 1svi_A GTP-binding protein YSX 93.6 0.042 1.4E-06 45.3 3.3 25 40-64 22-46 (195)
463 2bbs_A Cystic fibrosis transme 93.6 0.036 1.2E-06 49.6 3.1 24 41-64 64-87 (290)
464 2nzj_A GTP-binding protein REM 93.6 0.056 1.9E-06 43.5 4.0 24 41-64 4-27 (175)
465 3q72_A GTP-binding protein RAD 93.6 0.04 1.4E-06 44.0 3.0 22 43-64 4-25 (166)
466 2erx_A GTP-binding protein DI- 93.5 0.043 1.5E-06 43.9 3.1 23 42-64 4-26 (172)
467 3tui_C Methionine import ATP-b 93.5 0.039 1.3E-06 51.0 3.1 24 41-64 54-77 (366)
468 3foz_A TRNA delta(2)-isopenten 93.5 0.044 1.5E-06 49.4 3.3 25 40-64 9-33 (316)
469 3kta_A Chromosome segregation 93.4 0.044 1.5E-06 44.9 3.1 21 43-63 28-48 (182)
470 1lw7_A Transcriptional regulat 93.4 0.044 1.5E-06 50.6 3.5 24 41-64 170-193 (365)
471 1u8z_A RAS-related protein RAL 93.4 0.038 1.3E-06 43.9 2.7 24 41-64 4-27 (168)
472 3pqc_A Probable GTP-binding pr 93.4 0.046 1.6E-06 44.8 3.2 26 40-65 22-47 (195)
473 2fn4_A P23, RAS-related protei 93.4 0.056 1.9E-06 43.6 3.7 26 39-64 7-32 (181)
474 2gj8_A MNME, tRNA modification 93.4 0.046 1.6E-06 44.4 3.1 23 42-64 5-27 (172)
475 3fvq_A Fe(3+) IONS import ATP- 93.4 0.042 1.4E-06 50.7 3.1 24 41-64 30-53 (359)
476 3q85_A GTP-binding protein REM 93.3 0.064 2.2E-06 42.8 3.9 23 42-64 3-25 (169)
477 2c61_A A-type ATP synthase non 93.3 0.04 1.4E-06 52.5 2.9 90 42-131 153-258 (469)
478 3sr0_A Adenylate kinase; phosp 93.3 0.042 1.4E-06 46.5 2.8 86 43-140 2-93 (206)
479 1u0j_A DNA replication protein 93.3 0.073 2.5E-06 46.9 4.4 35 30-64 93-127 (267)
480 1c1y_A RAS-related protein RAP 93.3 0.042 1.4E-06 43.8 2.7 23 42-64 4-26 (167)
481 2qmh_A HPR kinase/phosphorylas 93.3 0.054 1.8E-06 45.5 3.4 23 42-64 35-57 (205)
482 1z08_A RAS-related protein RAB 93.3 0.042 1.4E-06 44.0 2.7 24 41-64 6-29 (170)
483 1m7b_A RND3/RHOE small GTP-bin 93.2 0.054 1.9E-06 44.3 3.4 25 40-64 6-30 (184)
484 2cxx_A Probable GTP-binding pr 93.2 0.05 1.7E-06 44.5 3.1 22 43-64 3-24 (190)
485 1ek0_A Protein (GTP-binding pr 93.2 0.044 1.5E-06 43.7 2.7 22 43-64 5-26 (170)
486 1f6b_A SAR1; gtpases, N-termin 93.2 0.055 1.9E-06 45.0 3.4 34 30-64 15-48 (198)
487 1ky3_A GTP-binding protein YPT 93.2 0.056 1.9E-06 43.7 3.4 25 40-64 7-31 (182)
488 1z0j_A RAB-22, RAS-related pro 93.2 0.044 1.5E-06 43.8 2.6 24 41-64 6-29 (170)
489 1nrj_B SR-beta, signal recogni 93.2 0.048 1.6E-06 45.9 3.0 25 40-64 11-35 (218)
490 1kao_A RAP2A; GTP-binding prot 93.1 0.046 1.6E-06 43.4 2.6 23 42-64 4-26 (167)
491 2yv5_A YJEQ protein; hydrolase 93.1 0.074 2.5E-06 47.8 4.3 22 42-64 166-187 (302)
492 1pzn_A RAD51, DNA repair and r 93.1 0.067 2.3E-06 49.2 4.0 26 39-64 129-154 (349)
493 1vg8_A RAS-related protein RAB 93.1 0.058 2E-06 44.8 3.4 25 40-64 7-31 (207)
494 1z47_A CYSA, putative ABC-tran 93.0 0.051 1.7E-06 50.1 3.2 23 42-64 42-64 (355)
495 1pui_A ENGB, probable GTP-bind 93.0 0.037 1.3E-06 46.3 2.1 25 40-64 25-49 (210)
496 2www_A Methylmalonic aciduria 93.0 0.061 2.1E-06 49.5 3.7 25 40-64 73-97 (349)
497 3ea0_A ATPase, para family; al 93.0 0.063 2.1E-06 46.2 3.5 25 40-64 3-28 (245)
498 3cmu_A Protein RECA, recombina 92.9 0.098 3.3E-06 58.3 5.7 87 39-132 1425-1515(2050)
499 2qu8_A Putative nucleolar GTP- 92.9 0.076 2.6E-06 45.2 4.0 26 39-64 27-52 (228)
500 3ihw_A Centg3; RAS, centaurin, 92.9 0.048 1.6E-06 44.8 2.6 25 40-64 19-43 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=5.7e-28 Score=239.63 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=153.2
Q ss_pred ccchhhHHHHHHHHHcc-CCCeEEEEEEcCCCChHHHHHHHHhC--CcccccCCCeeEEEEEe--C--CHHHHHHHHHHH
Q 048347 21 LDLEDKMEELLDLLIER-QPQLSLVAIIDTMGFDRTAFIGEAYN--SSYVKNYFDCCAWVYYQ--L--SLDMMLDAIMKS 93 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~--~--~~~~~~~~i~~~ 93 (351)
|||++++++|.++|..+ ++..++|+|+||||+||||||+++|+ +.+++.+|+.++||+++ + ++.++++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 56799999999999999 3 689999999999
Q ss_pred hCCCCC---CccCCCCCHHHHHHHHHHhcCCc-eEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccchh-----
Q 048347 94 LMPLSA---LSEILDNDFEMKKNTLHNYLKNK-RYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIVGL----- 163 (351)
Q Consensus 94 ~~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v~l----- 163 (351)
++.... ....+..+.+.+...+++.|+++ |+||||||||+.+++ .+.. .+||+||| ||++.|+.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 987532 12234456778899999999996 999999999998765 2221 16999999 99977711
Q ss_pred -------------------------------------------------------hc---cc-----------cCCCC--
Q 048347 164 -------------------------------------------------------SS---CR-----------LENDE-- 172 (351)
Q Consensus 164 -------------------------------------------------------L~---w~-----------l~~~~-- 172 (351)
++ |+ ...+.
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHH
Confidence 00 11 00000
Q ss_pred c-----------------e-----------EEccCCCCeEEeccchHHHHHHc--CCCC-----CCHHHHHHHHHHHHHH
Q 048347 173 K-----------------I-----------RLDLVPPKGKLRARQLYQLWIAE--AFIP-----DNCESTAEEYLKELID 217 (351)
Q Consensus 173 ~-----------------i-----------y~~~fp~~~~~~~~~l~~~w~~e--g~i~-----~~~~~~~~~~~~~L~~ 217 (351)
. . |||+||+++.++ +.+|+++ ||+. .+.++.++ ||++|++
T Consensus 365 ~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~ 439 (549)
T 2a5y_B 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSK 439 (549)
T ss_dssp CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTT
T ss_pred HHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHH
Confidence 0 1 999999999998 8999999 9996 34677777 9999999
Q ss_pred CCCceeecc
Q 048347 218 RGFIQVNKK 226 (351)
Q Consensus 218 ~~~l~~~~~ 226 (351)
+|++++...
T Consensus 440 rsLl~~~~~ 448 (549)
T 2a5y_B 440 RGALLSGKR 448 (549)
T ss_dssp BSSCSEEEC
T ss_pred cCCeeEecC
Confidence 999998753
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=8.9e-23 Score=219.55 Aligned_cols=201 Identities=19% Similarity=0.280 Sum_probs=155.9
Q ss_pred ccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccc-ccCC-CeeEEEEEe-C---CHHH
Q 048347 12 GLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYV-KNYF-DCCAWVYYQ-L---SLDM 85 (351)
Q Consensus 12 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~-~---~~~~ 85 (351)
+++.....+|||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++||+++ . ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 35566778999999999999999876667899999999999999999999999544 4556 457799998 2 3345
Q ss_pred HHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCc--eEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccch
Q 048347 86 MLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNK--RYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIVG 162 (351)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k--~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v~ 162 (351)
.+..++..+............+.+.+.+.++..+.++ |+||||||||+.++|..+ .+|++||+ ||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 5677888887654433334567888999999999887 999999999998765543 56899999 9999762
Q ss_pred h-----------------------------------------------------------hc-----c------------
Q 048347 163 L-----------------------------------------------------------SS-----C------------ 166 (351)
Q Consensus 163 l-----------------------------------------------------------L~-----w------------ 166 (351)
. ++ |
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCC
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhh
Confidence 0 00 1
Q ss_pred ccCCCC------c--------------------eEEccCCCCeEEeccchHHHHHHcCCCCCCHHHHHHHHHHHHHHCCC
Q 048347 167 RLENDE------K--------------------IRLDLVPPKGKLRARQLYQLWIAEAFIPDNCESTAEEYLKELIDRGF 220 (351)
Q Consensus 167 ~l~~~~------~--------------------iy~~~fp~~~~~~~~~l~~~w~~eg~i~~~~~~~~~~~~~~L~~~~~ 220 (351)
...... . .||++||+++.+++..++.+|.++ ++.+++++++|+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSL 423 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTS
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccc
Confidence 000000 0 199999999999999999999554 4678999999999999
Q ss_pred ceeecc
Q 048347 221 IQVNKK 226 (351)
Q Consensus 221 l~~~~~ 226 (351)
++....
T Consensus 424 ~~~~~~ 429 (1249)
T 3sfz_A 424 LFCNRN 429 (1249)
T ss_dssp CEEEES
T ss_pred eEEecC
Confidence 987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=1.8e-23 Score=214.06 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=147.9
Q ss_pred ccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCe-eEEEEEe--CCHHHHHHHHHHHhC
Q 048347 19 VDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC-CAWVYYQ--LSLDMMLDAIMKSLM 95 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~--~~~~~~~~~i~~~~~ 95 (351)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|++++ ++...++..|+..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34999999999999998643 4789999999999999999999988778999997 8999999 888888888877543
Q ss_pred CCC---CCcc----CCCCCHHHHHHHHHHhc---CCceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccch--
Q 048347 96 PLS---ALSE----ILDNDFEMKKNTLHNYL---KNKRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIVG-- 162 (351)
Q Consensus 96 ~~~---~~~~----~~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v~-- 162 (351)
... .... ....+.+.+.+.+++.| .+||+||||||||+.+.|+.+. .||+||| ||++.++
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 211 1000 00123455667777766 7899999999999988887652 6999999 9998762
Q ss_pred ----------------hhc-----------------------------------------------cccCCCCc------
Q 048347 163 ----------------LSS-----------------------------------------------CRLENDEK------ 173 (351)
Q Consensus 163 ----------------lL~-----------------------------------------------w~l~~~~~------ 173 (351)
.|. |.......
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLe 360 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHH
Confidence 111 21111100
Q ss_pred ---------------eEEccCCCCeEEeccchHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCceee
Q 048347 174 ---------------IRLDLVPPKGKLRARQLYQLWIAEAFIPDNCESTAEEYLKELIDRGFIQVN 224 (351)
Q Consensus 174 ---------------iy~~~fp~~~~~~~~~l~~~w~~eg~i~~~~~~~~~~~~~~L~~~~~l~~~ 224 (351)
.|||+||+++.+++..++.+|.++| ++.+..++++|+++||++..
T Consensus 361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe
Confidence 1899999999999999999998886 24588999999999999875
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=184.98 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=109.0
Q ss_pred cCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccc-ccCCC-eeEEEEEe-CCHHHHHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYV-KNYFD-CCAWVYYQ-LSLDMMLDA 89 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~-~~~~~~~~~ 89 (351)
++.....+|||++++++|.++|.....+.++|+|+||||+||||||+++|++..+ +.+|. .++|++++ .+...++..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 4556778999999999999999865556899999999999999999999999655 78895 79999999 655555554
Q ss_pred H---HHHhCCCCCCccCCCCCHHHHHHHHHHhcCC--ceEEEEEeCCCChhhHHHHHhhcCCCCCCcEEEE-Eeeccc
Q 048347 90 I---MKSLMPLSALSEILDNDFEMKKNTLHNYLKN--KRYLIVIQDVWRGDIWDFLKEALPDHQNGSRILT-ALIHIV 161 (351)
Q Consensus 90 i---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~Iiv-TR~~~v 161 (351)
+ +..+............+.+.+...++..+.+ +++||||||+|+...+.. + ..|++||+ ||++.+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHH
Confidence 4 3455432211112455677888888888876 789999999998655432 2 46899999 999875
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.19 E-value=5.9e-11 Score=112.65 Aligned_cols=117 Identities=13% Similarity=0.017 Sum_probs=83.2
Q ss_pred cCCCCCccccchhhHHHHHHHH-Hcc--C--CCeEEEEE--EcCCCChHHHHHHHHhCCccccc-----CCCe-eEEEEE
Q 048347 13 LSWDNKVDLDLEDKMEELLDLL-IER--Q--PQLSLVAI--IDTMGFDRTAFIGEAYNSSYVKN-----YFDC-CAWVYY 79 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F~~-~~wv~~ 79 (351)
+......++||+++++++.+++ ..- + .....+.| +|++|+||||||+++++. ... .|.. .+|++.
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEG
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEEC
Confidence 3344578999999999999988 421 1 12344555 999999999999999987 433 2232 456654
Q ss_pred e--CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCh
Q 048347 80 Q--LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRG 134 (351)
Q Consensus 80 ~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~ 134 (351)
. .+..+++..++.+++.... ....+...+...+.+.+. +++++|||||++..
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 3 7788999999999866432 122345666777777775 67999999999764
No 6
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=1.4e-09 Score=101.80 Aligned_cols=143 Identities=12% Similarity=0.073 Sum_probs=93.6
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCC---eeEEEEEe--CCHHH
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD---CCAWVYYQ--LSLDM 85 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~--~~~~~ 85 (351)
+....+.++||+++++.+.+++... ......+.|+|++|+||||||+.+++. ....+. ..+|++.. .+...
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHH
Confidence 4445578999999999999988752 334568889999999999999999987 444432 24455544 67778
Q ss_pred HHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCh------hhHHHHHhhcCC-CCCCcEEEE-
Q 048347 86 MLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRG------DIWDFLKEALPD-HQNGSRILT- 155 (351)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~------~~~~~l~~~l~~-~~~gs~Iiv- 155 (351)
++..++.+++.... ....+..+..+.+.+.+. +++.++|||+++.. +.+..+...+.. ...+..+|+
T Consensus 93 ~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 93 VLADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 88888877754322 122345566666666664 45899999999653 233344333322 223445566
Q ss_pred Eeecc
Q 048347 156 ALIHI 160 (351)
Q Consensus 156 TR~~~ 160 (351)
|+...
T Consensus 170 ~~~~~ 174 (386)
T 2qby_A 170 TNDVK 174 (386)
T ss_dssp ESCGG
T ss_pred ECCCC
Confidence 76554
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=2.3e-09 Score=100.71 Aligned_cols=140 Identities=14% Similarity=0.004 Sum_probs=93.1
Q ss_pred CCccccchhhHHHHHHHHHc--cCCCeEEEEEEcCCCChHHHHHHHHhCCcccc----cCC--CeeEEEEEe--C-CHHH
Q 048347 17 NKVDLDLEDKMEELLDLLIE--RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVK----NYF--DCCAWVYYQ--L-SLDM 85 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F--~~~~wv~~~--~-~~~~ 85 (351)
.+.++||+++++++.+++.. .....+.+.|+|++|+|||+||+.+++...-. ..+ ...+|++.. . +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 47899999999999988865 23345688899999999999999999872111 112 234455544 5 8889
Q ss_pred HHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCChhh---HHH-HHhhcCCCCCCcEEEE-Eeec
Q 048347 86 MLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGDI---WDF-LKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~---~~~-l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
++..++.++...... ....+...+.+.+.+.++.++.++||||++.... .+. +...+... .+.++|. |+..
T Consensus 99 ~~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 999999888432110 1233446677788888877777999999976432 222 22222222 5667777 7655
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.96 E-value=2.6e-09 Score=100.21 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=84.4
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC-----C-eeEEEEEe--CC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF-----D-CCAWVYYQ--LS 82 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~-~~~wv~~~--~~ 82 (351)
+....+.++||+++++++.+++..- ......+.|+|++|+||||+|+.+++. ....+ . ..+|++.. .+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCC
Confidence 3444578999999999999988542 334567889999999999999999987 32211 1 23444443 67
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc--CCceEEEEEeCCCCh
Q 048347 83 LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL--KNKRYLIVIQDVWRG 134 (351)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~ 134 (351)
...++..++.++..... ....+..++.+.+.+.+ .+++.+++||+++..
T Consensus 92 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 78899999999966433 12344666677777776 356899999999765
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.93 E-value=2.1e-09 Score=99.37 Aligned_cols=136 Identities=9% Similarity=0.088 Sum_probs=89.3
Q ss_pred ccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-C-------CH
Q 048347 12 GLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-L-------SL 83 (351)
Q Consensus 12 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~-------~~ 83 (351)
.+......++||++++++|.+++..+ +++.|+|++|+|||||++++++. . . .+|++.. . +.
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 45556778999999999999998653 58889999999999999999877 3 1 4555544 2 56
Q ss_pred HHHHHHHHHHhCCC--------------CCCccCCCCCHHHHHHHHHHhcCC-ceEEEEEeCCCChhh---------HHH
Q 048347 84 DMMLDAIMKSLMPL--------------SALSEILDNDFEMKKNTLHNYLKN-KRYLIVIQDVWRGDI---------WDF 139 (351)
Q Consensus 84 ~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~~---------~~~ 139 (351)
..+.+.+.+.+... .........+..++.+.+.+..+. ++.++||||++..+. +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 67777777665430 000001124556666777666643 389999999976432 333
Q ss_pred HHhhcCCCCCCcEEEE-Eeec
Q 048347 140 LKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 140 l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
+....... .+.++|+ ++..
T Consensus 155 L~~~~~~~-~~~~~il~g~~~ 174 (350)
T 2qen_A 155 FAYAYDSL-PNLKIILTGSEV 174 (350)
T ss_dssp HHHHHHHC-TTEEEEEEESSH
T ss_pred HHHHHHhc-CCeEEEEECCcH
Confidence 33322222 3667777 6554
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=1.3e-08 Score=95.55 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=96.5
Q ss_pred CCCCCccccchhhHHHHHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCC-CeeEEEEEe--CCHHHH
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYF-DCCAWVYYQ--LSLDMM 86 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~--~~~~~~ 86 (351)
....+.++||+++++++..++... ....+.+.|+|+.|+||||||+.+++. ..... ...++++.. .+...+
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHH
Confidence 334478999999999999998752 222347889999999999999999987 43332 233455544 667889
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCh--hhHHHHHhhcCCCC----CCcEEEE-Ee
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK--NKRYLIVIQDVWRG--DIWDFLKEALPDHQ----NGSRILT-AL 157 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--~~~~~l~~~l~~~~----~gs~Iiv-TR 157 (351)
...++.+++.... ....+...+.+.+.+.+. +++.+++||+++.. +....+...+.... .+..+|+ |+
T Consensus 91 ~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 91 IGEIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 9999988865432 123355666666666664 56889999999764 44555555554321 3566666 77
Q ss_pred ecc
Q 048347 158 IHI 160 (351)
Q Consensus 158 ~~~ 160 (351)
+..
T Consensus 168 ~~~ 170 (389)
T 1fnn_A 168 NDA 170 (389)
T ss_dssp STH
T ss_pred Cch
Confidence 653
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=5.9e-09 Score=96.53 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=83.4
Q ss_pred ccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-C------CHH
Q 048347 12 GLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-L------SLD 84 (351)
Q Consensus 12 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~------~~~ 84 (351)
.+......++||+++++.|.+ +.. +++.|+|++|+|||+|++++++. ... ..+|++.. . +..
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 344566789999999999999 643 58999999999999999999987 332 24666654 3 345
Q ss_pred HHHHHHHHHhCC-------------CC---CCcc----C-----CCCCHHHHHHHHHHhcCCceEEEEEeCCCChh----
Q 048347 85 MMLDAIMKSLMP-------------LS---ALSE----I-----LDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGD---- 135 (351)
Q Consensus 85 ~~~~~i~~~~~~-------------~~---~~~~----~-----~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---- 135 (351)
.+...+.+.+.. .. ..+. . .......+.+.+.+.-+ ++.+|||||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555544311 00 0000 0 12345556666655433 48999999997632
Q ss_pred -h-HHHHHhhcCCCCCCcEEEE-Eeecc
Q 048347 136 -I-WDFLKEALPDHQNGSRILT-ALIHI 160 (351)
Q Consensus 136 -~-~~~l~~~l~~~~~gs~Iiv-TR~~~ 160 (351)
+ +..+....... .+.++|+ +|...
T Consensus 155 ~~~~~~l~~~~~~~-~~~~~i~~g~~~~ 181 (357)
T 2fna_A 155 VNLLPALAYAYDNL-KRIKFIMSGSEMG 181 (357)
T ss_dssp CCCHHHHHHHHHHC-TTEEEEEEESSHH
T ss_pred hhHHHHHHHHHHcC-CCeEEEEEcCchH
Confidence 2 23333222222 3667777 77543
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.77 E-value=8.8e-09 Score=95.00 Aligned_cols=88 Identities=27% Similarity=0.335 Sum_probs=56.0
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.++.+++|++|+++.+. +..+|..++.+++|++|++++|...+.+|..++.+++|++|++++|...+.+|.+++++++
T Consensus 201 ~l~~l~~L~~L~L~~N~--l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSP--LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GGGGCTTCCEEEEESSC--CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred hhcCCCCCCEEEccCCC--CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 34556666666663322 2245555666666777777766555666666666777777777766666667766777777
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|++|++++++
T Consensus 279 L~~L~L~~n~ 288 (328)
T 4fcg_A 279 LEKLDLRGCV 288 (328)
T ss_dssp CCEEECTTCT
T ss_pred CCEEeCCCCC
Confidence 7777776643
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.73 E-value=1.9e-08 Score=85.51 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=54.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+.+..+++|++|+++.+. .....|..++.+++|++|++++|......|..++.+++|++|++++|..+..+| .+.+++
T Consensus 82 ~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp GGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred hhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC
Confidence 345566677777773322 222244556667777777777763223455566777777777777755466666 567777
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|+++++.
T Consensus 160 ~L~~L~l~~n~ 170 (197)
T 4ezg_A 160 ELKSLNIQFDG 170 (197)
T ss_dssp SCCEEECTTBC
T ss_pred CCCEEECCCCC
Confidence 77777776654
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.71 E-value=2e-08 Score=92.61 Aligned_cols=88 Identities=24% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+.+..+++|++|++ .++.....+|..++.+++|++|++++|...+.+|..++.+++|++|+|++|..++.+|+++++|+
T Consensus 223 ~~l~~l~~L~~L~L-s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 223 PAIHHLPKLEELDL-RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp GGGGGCTTCCEEEC-TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred hhhccCCCCCEEEC-cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 45678999999999 55556668898899999999999999988899999999999999999999999999999999999
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|+.+++..
T Consensus 302 ~L~~l~l~~ 310 (328)
T 4fcg_A 302 ANCIILVPP 310 (328)
T ss_dssp TTCEEECCG
T ss_pred CceEEeCCH
Confidence 999998874
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.69 E-value=7.9e-08 Score=82.43 Aligned_cols=120 Identities=8% Similarity=0.007 Sum_probs=73.0
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe----CCHHHHHHHHHH
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ----LSLDMMLDAIMK 92 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~~~~i~~ 92 (351)
-.+++|+++.++.+.+++.... ...+.|+|++|+|||++|+.+++. .........++.+. .....+...+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIK- 90 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHH-
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHH-
Confidence 3568999999999999997653 223789999999999999999876 32222222334443 12211111111
Q ss_pred HhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 93 SLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
.+..... .-.+++.++|+||++.. +..+.+...+.....+.++|+ |+..
T Consensus 91 ~~~~~~~------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 91 EFARTAP------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HHHTSCC------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHhcccC------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 1111000 01257889999999765 445566655554455667777 6544
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.67 E-value=9.3e-08 Score=83.00 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=74.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~ 97 (351)
.+++|+++.++.+..++..+. ....+.|+|++|+||||||+.+++. ....+....+-+ ..... ...+.......
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~ 96 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITATPC--GVCDN-CREIEQGRFVD 96 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSSCC--SCSHH-HHHHHTTCCSS
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCC--cccHH-HHHHhccCCcc
Confidence 469999999999999997653 2347889999999999999999876 322221100000 00000 01111000000
Q ss_pred CC-CccCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCC--hhhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 98 SA-LSEILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWR--GDIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
.. .........+.+.+.+... ..+++.++|+||++. .+.++.+...+.....+.++|+ |+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred eEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00 0000011112222222221 135678999999965 3567777776655555677777 7654
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.61 E-value=3.5e-08 Score=101.29 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=79.4
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhc
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
..+.++.+++|++|+++.+... ..+|..++.+++|++|+|++|...+.+|..++.|++|++|+|++|...+.+|..+++
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred CchhhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 3456778899999999655444 478999999999999999999656699999999999999999998877899999999
Q ss_pred CCCCCEEEecCC
Q 048347 314 IKALRKLESWWP 325 (351)
Q Consensus 314 L~~L~~L~l~~~ 325 (351)
|++|++|++++.
T Consensus 703 l~~L~~L~ls~N 714 (768)
T 3rgz_A 703 LTMLTEIDLSNN 714 (768)
T ss_dssp CCCCSEEECCSS
T ss_pred CCCCCEEECcCC
Confidence 999999999875
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.59 E-value=1e-07 Score=80.92 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=72.8
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcC
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
++.+..+++|++|+++ ++ .+..++ .+..+++|++|++++|......|..++.+++|++|++++|......|..++++
T Consensus 59 l~~l~~l~~L~~L~l~-~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 59 LTGIEYAHNIKDLTIN-NI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp CTTGGGCTTCSEEEEE-SC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred hHHHhcCCCCCEEEcc-CC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 3467889999999995 44 444444 68889999999999994333578889999999999999976555678899999
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|++|+++++.
T Consensus 136 ~~L~~L~L~~n~ 147 (197)
T 4ezg_A 136 PKVNSIDLSYNG 147 (197)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEEccCCC
Confidence 999999999986
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.55 E-value=4.2e-08 Score=98.60 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=44.8
Q ss_pred eeeCCCCCCcccEEEEecCCcccc------------------cccccc--ccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 259 LVCGHGGFPRQEILHLKSMLWLEE------------------WKMETG--AMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 259 lp~~~~~l~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
+|..++.+++|++|+|++|. +.. +|..++ ++++|++|++++|...+.+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 55566666777777777763 444 676666 677777777776666666777777777777
Q ss_pred EEEecCCC
Q 048347 319 KLESWWPR 326 (351)
Q Consensus 319 ~L~l~~~~ 326 (351)
+|+++++.
T Consensus 277 ~L~Ls~n~ 284 (636)
T 4eco_A 277 LINVACNR 284 (636)
T ss_dssp EEECTTCT
T ss_pred EEECcCCC
Confidence 77776654
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.5e-07 Score=83.57 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=75.9
Q ss_pred cccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCccccc---CCCeeEEEEEe----CCHHHHHHHH
Q 048347 20 DLDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN---YFDCCAWVYYQ----LSLDMMLDAI 90 (351)
Q Consensus 20 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~----~~~~~~~~~i 90 (351)
+.|||++.+++...|... +.+..-+-|+|+.|+|||++|+.|++..+-.. ......++++. .+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 789999999999888652 33556778999999999999999998832111 11134556666 6778899999
Q ss_pred HHHhCCCCCCccCCCCCHHHHHHHHHHh--cCCceEEEEEeCCCChh
Q 048347 91 MKSLMPLSALSEILDNDFEMKKNTLHNY--LKNKRYLIVIQDVWRGD 135 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--L~~k~~LlVLDdv~~~~ 135 (351)
++++...... .......+.+.+... -.+++++++||+++...
T Consensus 102 ~~~L~g~~~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 102 WFAISKENLC---GDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhcCCCCC---chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 9999764321 122333344433332 24678999999998653
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.54 E-value=6e-08 Score=88.71 Aligned_cols=89 Identities=11% Similarity=-0.019 Sum_probs=43.6
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.+..+++|++|+++.++.....+|..++.+++|++|++++|...+.+|..++.+++|++|++++|.....+|..++++++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 34455555555553111122234544555555555555555222245555555555555555554332345555555555
Q ss_pred CCEEEecCC
Q 048347 317 LRKLESWWP 325 (351)
Q Consensus 317 L~~L~l~~~ 325 (351)
|++|++++.
T Consensus 151 L~~L~L~~N 159 (313)
T 1ogq_A 151 LVGITFDGN 159 (313)
T ss_dssp CCEEECCSS
T ss_pred CCeEECcCC
Confidence 555555543
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.53 E-value=2.7e-07 Score=80.45 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccCh-hhhcCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPE-ELWRIK 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~ 315 (351)
+..+++|++|+|+.+ .+..+|.. +..+++|++|++++| .+..+|..++.+++|++|+|++| .+..+|. .+.+++
T Consensus 84 ~~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTN--QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCT
T ss_pred cccCCCcCEEECCCC--cCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCC
Confidence 345555666666322 22233332 355566666666665 45566655666666666666653 4555553 245566
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|+.|++++
T Consensus 160 ~L~~L~l~~ 168 (229)
T 3e6j_A 160 SLTHAYLFG 168 (229)
T ss_dssp TCCEEECTT
T ss_pred CCCEEEeeC
Confidence 666666654
No 23
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.53 E-value=2e-07 Score=76.85 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccc-ccccccccCCccEEeecCCccccccC--hhhhc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEE-WKMETGAMQKLKSLIVNPCAYLRKFP--EELWR 313 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~lP--~~i~~ 313 (351)
.+..+++|++|+++.+. +..+ ..+..+++|++|++++| .+.. +|..++.+++|++|++++| .+..+| ..+.+
T Consensus 44 ~~~~l~~L~~L~l~~n~--l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVG--LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp CCGGGGGCCEEEEESSC--CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred HHHhCCCCCEEeCcCCC--CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 34788999999995443 3344 56888999999999999 5665 7777778999999999986 678877 78899
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|++++++
T Consensus 119 l~~L~~L~l~~N~ 131 (168)
T 2ell_A 119 LECLKSLDLFNCE 131 (168)
T ss_dssp CSCCCEEECCSSG
T ss_pred CCCCCEEEeeCCc
Confidence 9999999999875
No 24
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.52 E-value=1.5e-07 Score=76.09 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=69.9
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccc-ccccccccCCccEEeecCCccccccC--hhhh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEE-WKMETGAMQKLKSLIVNPCAYLRKFP--EELW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~lP--~~i~ 312 (351)
+.+..+++|++|+++.+ .+..+ ..++.+++|++|++++| .+.. +|..++.+++|++|++++| .+..+| ..++
T Consensus 36 ~~~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~ 110 (149)
T 2je0_A 36 GLTDEFEELEFLSTINV--GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK 110 (149)
T ss_dssp SCCTTCTTCCEEECTTS--CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGG
T ss_pred HHHhhcCCCcEEECcCC--CCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHh
Confidence 45578999999999433 33344 56888999999999999 5665 8877888999999999986 577765 7899
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++++
T Consensus 111 ~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 111 KLENLKSLDLFNCE 124 (149)
T ss_dssp GCTTCCEEECTTCG
T ss_pred hCCCCCEEeCcCCc
Confidence 99999999999875
No 25
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=1.2e-07 Score=93.85 Aligned_cols=87 Identities=18% Similarity=0.111 Sum_probs=75.0
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccccc--Chhhh
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKF--PEELW 312 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l--P~~i~ 312 (351)
++.++.+++|+.|+|+.+ .+..+|..++.+++|++|+|++| .+..+| .++.|++|++|+|++| .+..+ |..++
T Consensus 456 lp~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~ 530 (567)
T 1dce_A 456 LCHLEQLLLVTHLDLSHN--RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 530 (567)
T ss_dssp CCCGGGGTTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred CcCccccccCcEeecCcc--cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence 455788899999999544 33478989999999999999999 688899 8999999999999985 57777 89999
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
+|++|+.|++++.+
T Consensus 531 ~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 531 SCPRLVLLNLQGNS 544 (567)
T ss_dssp GCTTCCEEECTTSG
T ss_pred cCCCCCEEEecCCc
Confidence 99999999999865
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.49 E-value=4.5e-08 Score=99.87 Aligned_cols=86 Identities=20% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.+..+++|++|+|+.+ .+..+|..++.+++|++|+|++| .+..+|..++.|.+|++|+|++| .+..+|.++++|++
T Consensus 242 ~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGN--SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCN 317 (727)
T ss_dssp GGGGCCSCSCCBCTTS--CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTT
T ss_pred hhcCCCCCCEEEeeCC--cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence 4457899999999433 33378888899999999999999 68899999999999999999985 68899999999999
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|++|++++.+
T Consensus 318 L~~L~L~~N~ 327 (727)
T 4b8c_D 318 LQFLGVEGNP 327 (727)
T ss_dssp CCCEECTTSC
T ss_pred ccEEeCCCCc
Confidence 9999998865
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.48 E-value=6.8e-08 Score=98.54 Aligned_cols=87 Identities=16% Similarity=0.037 Sum_probs=73.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
..+..+++|+.|+|+ ++ .+..+|..+..+++|++|+|++| .+..+|..++.|++|++|+|++| .+..+|.++++|+
T Consensus 218 ~~~~~l~~L~~L~Ls-~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLS-NL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECT-TS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred hhhccCCCCcEEECC-CC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 456788999999994 33 34478888889999999999999 68899999999999999999996 5779999999999
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|+++++.
T Consensus 294 ~L~~L~L~~N~ 304 (727)
T 4b8c_D 294 QLKYFYFFDNM 304 (727)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 99999999864
No 28
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=2.6e-07 Score=76.96 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCCCC-CceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccc-cccCCccEEeecCCccccccCh--hhhc
Q 048347 238 PEKLP-HLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMET-GAMQKLKSLIVNPCAYLRKFPE--ELWR 313 (351)
Q Consensus 238 l~~l~-~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~c~~l~~lP~--~i~~ 313 (351)
+..+. +|++|+++.+ .+..+ ..+..+++|++|++++| .+..+|..+ +.+++|++|++++| .+..+|. .+++
T Consensus 37 ~~~~~~~L~~L~Ls~N--~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~ 111 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDN--EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLAS 111 (176)
T ss_dssp GGGGTTCCSEEECCSS--CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGG
T ss_pred hhhcCCCCCEEECCCC--CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhc
Confidence 33443 7888888433 23344 45677788888888887 577777654 77888888888874 5677776 6777
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|++++.+
T Consensus 112 l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 112 LKSLTYLCILRNP 124 (176)
T ss_dssp CTTCCEEECCSSG
T ss_pred CCCCCEEEecCCC
Confidence 8888888887765
No 29
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.47 E-value=2.7e-07 Score=76.99 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=68.6
Q ss_pred CCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRIKAL 317 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~L 317 (351)
.++|++|+++.+. +..+ |..+..+++|++|+|++| .+..+|.. ++.+++|++|+|++ ..+..+|.+ ++++++|
T Consensus 32 ~~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp CTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCC
Confidence 3789999994333 3344 566889999999999999 79999987 58999999999998 468889986 8899999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|++++.+
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998854
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.47 E-value=1.1e-07 Score=78.37 Aligned_cols=88 Identities=23% Similarity=0.238 Sum_probs=73.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccc--ccccccCCccEEeecCCccccccCh----
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWK--METGAMQKLKSLIVNPCAYLRKFPE---- 309 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lP~---- 309 (351)
+.+..+++|++|+++.+.... .+|..+..+++|++|++++| .+..+| ..++.+++|++|++++| .+..+|.
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 141 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRES 141 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHH
T ss_pred hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHH
Confidence 677889999999995444332 36766667999999999999 688877 67899999999999996 5777886
Q ss_pred hhhcCCCCCEEEecCCC
Q 048347 310 ELWRIKALRKLESWWPR 326 (351)
Q Consensus 310 ~i~~L~~L~~L~l~~~~ 326 (351)
.+.++++|++|+++++.
T Consensus 142 ~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHTTCSSCCEETTEETT
T ss_pred HHHhCccCcEecCCCCC
Confidence 78899999999999876
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.46 E-value=2.2e-07 Score=78.68 Aligned_cols=87 Identities=21% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhhcCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
+..+++|++|+++.+ ......|..+..+++|++|+|++| .+..+|.. ++.+++|++|+|++|......|..++.+++
T Consensus 50 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 50 FGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp GGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred cccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 678899999999443 333234667889999999999999 67777665 889999999999996544455778899999
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|++|++++.+
T Consensus 128 L~~L~L~~N~ 137 (192)
T 1w8a_A 128 LTSLNLASNP 137 (192)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEeCCCC
Confidence 9999998754
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.45 E-value=5.4e-07 Score=78.46 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhh
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELW 312 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~ 312 (351)
...+..+++|++|+|+.+. +..+|.. +..+++|++|+|++| .+..+|.. ++.+++|++|+|++| .+..+|.++.
T Consensus 57 ~~~~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 132 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIE 132 (229)
T ss_dssp TTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGG
T ss_pred HHHhhCccCCcEEECCCCC--CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccc
Confidence 3456789999999994443 3466654 688999999999999 68888876 689999999999984 6889999999
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++..
T Consensus 133 ~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 133 RLTHLTHLALDQNQ 146 (229)
T ss_dssp GCTTCSEEECCSSC
T ss_pred cCCCCCEEECCCCc
Confidence 99999999998754
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.44 E-value=4.3e-07 Score=78.63 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=38.6
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCcccccc-ChhhhcCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKF-PEELWRIK 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~ 315 (351)
+..+++|++|+|+ ++......|..+..+++|++|+|++| .+..+|.. ++.+++|++|+|++| .+..+ |..+.+++
T Consensus 52 ~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 52 FSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLH 128 (220)
T ss_dssp STTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred hhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCC
Confidence 3445555555552 22111112334555555555555555 34555544 344555555555553 23333 33344555
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|++|++++
T Consensus 129 ~L~~L~L~~ 137 (220)
T 2v9t_B 129 NLNLLSLYD 137 (220)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 555555544
No 34
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.43 E-value=2.1e-07 Score=77.58 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=75.4
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCC-CCCCcccEEEEecCCccccccc--cccccCCccEEeecCCccccccChh--
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGH-GGFPRQEILHLKSMLWLEEWKM--ETGAMQKLKSLIVNPCAYLRKFPEE-- 310 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lP~~-- 310 (351)
+.+..+++|++|+++.+ .+..+|... ..+++|++|++++| .++.+|. .++.+++|++|++++| .+..+|..
T Consensus 58 ~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~ 133 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNN--RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRL 133 (176)
T ss_dssp CCCCCCSSCCEEECCSS--CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHH
T ss_pred cccccCCCCCEEECCCC--cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHH
Confidence 56788999999999433 344677554 78999999999999 6899997 7899999999999995 57788986
Q ss_pred --hhcCCCCCEEEecCCChhH
Q 048347 311 --LWRIKALRKLESWWPRPEL 329 (351)
Q Consensus 311 --i~~L~~L~~L~l~~~~~~~ 329 (351)
++.+++|+.|++++...+-
T Consensus 134 ~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHHCTTCSEETTEECCHHH
T ss_pred HHHHHCCccceeCCCcCCHHH
Confidence 8999999999999887443
No 35
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.43 E-value=4.1e-07 Score=73.39 Aligned_cols=84 Identities=19% Similarity=0.093 Sum_probs=69.5
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccc-cChhhhcCCCCC
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRK-FPEELWRIKALR 318 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~-lP~~i~~L~~L~ 318 (351)
..++|+.|+++.+......+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++++++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence 34789999994443332478888899999999999999 68877 679999999999999965 555 888888899999
Q ss_pred EEEecCCC
Q 048347 319 KLESWWPR 326 (351)
Q Consensus 319 ~L~l~~~~ 326 (351)
+|+++++.
T Consensus 92 ~L~ls~N~ 99 (149)
T 2je0_A 92 HLNLSGNK 99 (149)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 99999876
No 36
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=2.2e-07 Score=84.79 Aligned_cols=116 Identities=9% Similarity=0.107 Sum_probs=71.6
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~ 96 (351)
.+++|+++.++.+.+++..+.. ..+.++|++|+|||++|+.+++. +........++.+. .+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~-------------- 82 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASD-------------- 82 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTS--------------
T ss_pred HHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCcc--------------
Confidence 5689999999999999976542 22789999999999999999887 32211111223332 11
Q ss_pred CCCCccCCCCCHHHHHHHHHHh------c-CCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 97 LSALSEILDNDFEMKKNTLHNY------L-KNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~------L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
....+.+.+.+... + .+++.++|+||++.. +.++.+...+.....+.++|+ |+..
T Consensus 83 --------~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 83 --------DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp --------CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred --------ccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 01122222222221 1 356889999999764 455555555554445677777 7543
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.40 E-value=9.6e-07 Score=73.44 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=69.0
Q ss_pred CCCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhh-h
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEEL-W 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i-~ 312 (351)
..+..+++|++|+++.+ .+..+|.. +..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|..+ .
T Consensus 46 ~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 121 (177)
T 2o6r_A 46 GVFDKLTQLTKLSLSQN--QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFD 121 (177)
T ss_dssp TTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred HHhcCcccccEEECCCC--cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhc
Confidence 34578899999999433 33455544 578999999999998 68888776 688999999999985 678888875 7
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++.+
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 79999999998765
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.39 E-value=1.8e-07 Score=85.56 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=63.8
Q ss_pred CCCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhc
Q 048347 234 PMPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
....+..+++|++|+++.+. ....+|..+..+++|++|++++|...+.+|..++.+++|++|++++|.....+|..+++
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred CChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 33456777888888884333 22356767777888888888887433367777888888888888876544477877777
Q ss_pred CC-CCCEEEecCCC
Q 048347 314 IK-ALRKLESWWPR 326 (351)
Q Consensus 314 L~-~L~~L~l~~~~ 326 (351)
++ +|++|++++..
T Consensus 172 l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 172 FSKLFTSMTISRNR 185 (313)
T ss_dssp CCTTCCEEECCSSE
T ss_pred hhhcCcEEECcCCe
Confidence 77 77888777643
No 39
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.37 E-value=6.7e-07 Score=74.16 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRIKAL 317 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~L 317 (351)
.++|++|+++.+ .+..+ |..+..+++|++|+|++| .+..+|.. ++.+++|++|+|++| .+..+|.+ +.++++|
T Consensus 29 ~~~l~~L~L~~N--~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 29 PTTTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp CTTCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCC--cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence 478999999433 33344 556889999999999999 68888887 589999999999984 68888875 7899999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|++++.+
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998853
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.6e-07 Score=97.25 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=52.6
Q ss_pred eeeCCCCCCcccEEEEecCCcccc------------------cccccc--ccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 259 LVCGHGGFPRQEILHLKSMLWLEE------------------WKMETG--AMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 259 lp~~~~~l~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
+|..++.+++|++|+|++|. +.. +|..++ ++++|++|+|++|.....+|..+++|++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 66677788888888888884 554 787777 888888888888777778888888888888
Q ss_pred EEEecCCC
Q 048347 319 KLESWWPR 326 (351)
Q Consensus 319 ~L~l~~~~ 326 (351)
.|+++++.
T Consensus 519 ~L~Ls~N~ 526 (876)
T 4ecn_A 519 SLNIACNR 526 (876)
T ss_dssp EEECTTCT
T ss_pred EEECcCCC
Confidence 88887764
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.36 E-value=6.8e-07 Score=80.78 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=38.5
Q ss_pred CCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChhh-hcCCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEEL-WRIKA 316 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i-~~L~~ 316 (351)
..+++|++|+++.+ .+..+|..+..+++|++|++++| .+..+|. .++.+++|++|++++| .+..+|.++ .++++
T Consensus 74 ~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN--QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPK 149 (290)
T ss_dssp SCCTTCCEEECCSS--CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred CCCCcCCEEECCCC--cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccC
Confidence 34455555555222 22244444455555555555555 3444442 2455555555555543 344444432 34555
Q ss_pred CCEEEecC
Q 048347 317 LRKLESWW 324 (351)
Q Consensus 317 L~~L~l~~ 324 (351)
|+.|++++
T Consensus 150 L~~L~L~~ 157 (290)
T 1p9a_G 150 LEKLSLAN 157 (290)
T ss_dssp CCEEECTT
T ss_pred CCEEECCC
Confidence 55555544
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.35 E-value=2e-07 Score=93.59 Aligned_cols=90 Identities=8% Similarity=0.055 Sum_probs=59.2
Q ss_pred CCCCCCCCceEEEEecccccCce-----------------eeeCCC--CCCcccEEEEecCCccccccccccccCCccEE
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRK-----------------LVCGHG--GFPRQEILHLKSMLWLEEWKMETGAMQKLKSL 296 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~-----------------lp~~~~--~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 296 (351)
+.++++++|++|+|+.+...+ . +|..++ .+++|++|++++|...+.+|..++++++|++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 346677777777774443222 1 676666 77777777777775566777777777777777
Q ss_pred eecCCcccc--ccChhhhcC------CCCCEEEecCCC
Q 048347 297 IVNPCAYLR--KFPEELWRI------KALRKLESWWPR 326 (351)
Q Consensus 297 ~l~~c~~l~--~lP~~i~~L------~~L~~L~l~~~~ 326 (351)
++++|..+. .+|.++++| ++|++|+++++.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 777765233 477777665 677777776643
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.33 E-value=9.1e-07 Score=76.55 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=52.2
Q ss_pred CCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCcccccc-Chhhhc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKF-PEELWR 313 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~l-P~~i~~ 313 (351)
.+..+++|++|+++.+. . ..++ ..+..+++|++|+|++| .+..+ |..++.+++|++|+|++| .+..+ |..+..
T Consensus 76 ~~~~l~~L~~L~Ls~N~-l-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 151 (220)
T 2v70_A 76 AFEGASGVNEILLTSNR-L-ENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDT 151 (220)
T ss_dssp TTTTCTTCCEEECCSSC-C-CCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTT
T ss_pred HhCCCCCCCEEECCCCc-c-CccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcC
Confidence 45566677777773222 2 2333 33666777777777777 45544 445667777777777764 34444 566677
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|+.|++++.+
T Consensus 152 l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 LHSLSTLNLLANP 164 (220)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEecCcC
Confidence 7777777776643
No 44
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.33 E-value=8.4e-07 Score=75.18 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=65.8
Q ss_pred CCCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChh-hh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEE-LW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~-i~ 312 (351)
..+..+++|++|+++.+. +..++ ..+..+++|++|+|++| .+..+|. .++.+++|++|+|++| .+..+|.+ +.
T Consensus 48 ~~~~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~ 123 (193)
T 2wfh_A 48 KELSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFN 123 (193)
T ss_dssp GGGGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT
T ss_pred HHhhcccCCCEEECCCCc--CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhh
Confidence 345678889999994332 33444 45788899999999998 5777765 4888999999999984 67788875 67
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|+.|++++.+
T Consensus 124 ~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 124 DLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCccccEEEeCCCC
Confidence 88999999998743
No 45
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=76.00 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=69.6
Q ss_pred CCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCcccccc-ChhhhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKF-PEELWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~l-P~~i~~L 314 (351)
+..+++|++|+++.+ .+..++. .+..+++|++|+|++| .+..+|.. ++.+++|++|+|++| .+..+ |..+.++
T Consensus 53 ~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 128 (220)
T 2v70_A 53 FKKLPQLRKINFSNN--KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGL 128 (220)
T ss_dssp GGGCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTC
T ss_pred hccCCCCCEEECCCC--cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCC
Confidence 578999999999433 3445554 6889999999999999 67777665 889999999999996 45555 6788999
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|++|++++..
T Consensus 129 ~~L~~L~L~~N~ 140 (220)
T 2v70_A 129 SSVRLLSLYDNQ 140 (220)
T ss_dssp TTCSEEECTTSC
T ss_pred ccCCEEECCCCc
Confidence 999999998864
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.32 E-value=1.6e-06 Score=76.38 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccCh-hhhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPE-ELWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L 314 (351)
+..+++|++|+++.+ .+..+|.. +..+++|++|++++| .+..+|. .++.+++|++|+|++| .+..+|. .+.++
T Consensus 103 ~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 178 (251)
T 3m19_A 103 FDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRL 178 (251)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred hcccCCCCEEEcCCC--cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCC
Confidence 345566666666322 22234433 355666666666666 4555555 3566666666666664 3444544 45566
Q ss_pred CCCCEEEecCC
Q 048347 315 KALRKLESWWP 325 (351)
Q Consensus 315 ~~L~~L~l~~~ 325 (351)
++|++|++++.
T Consensus 179 ~~L~~L~l~~N 189 (251)
T 3m19_A 179 GKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEEeeCC
Confidence 66666666653
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.31 E-value=1.9e-06 Score=73.50 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=39.4
Q ss_pred CCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRIK 315 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~ 315 (351)
..+++|++|+++.+ .+..+|.. +..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|.. +.+++
T Consensus 73 ~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 73 NKLTSLTYLNLSTN--QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLT 148 (208)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CCCCCcCEEECCCC--cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCC
Confidence 44555555555222 12223322 345555555555555 34444443 455555555555553 34444443 34555
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|+.|++++
T Consensus 149 ~L~~L~l~~ 157 (208)
T 2o6s_A 149 SLQYIWLHD 157 (208)
T ss_dssp TCCEEECCS
T ss_pred CccEEEecC
Confidence 555555554
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.30 E-value=2.2e-06 Score=73.15 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=70.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~ 312 (351)
..+..+++|++|+++.+ .+..+|.. +..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|.. +.
T Consensus 46 ~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 121 (208)
T 2o6s_A 46 GVFDELTSLTQLYLGGN--KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFD 121 (208)
T ss_dssp TTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred hhhcccccCcEEECCCC--ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhc
Confidence 34678999999999433 33456554 578999999999999 68888876 689999999999985 67788876 68
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++..
T Consensus 122 ~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQ 135 (208)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCcCCEEECCCCc
Confidence 99999999998754
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=6.7e-07 Score=81.69 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=71.9
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHH--HHHHHHHHh
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDM--MLDAIMKSL 94 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~--~~~~i~~~~ 94 (351)
.+++|+++.++.+.+++..+. ..-+.++|+.|+||||+|+.+++. +........++.+. .+... ..+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVIREKV--- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTTHHHH---
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHHHHHH---
Confidence 459999999999999987653 333789999999999999999887 32221112233333 22111 011111
Q ss_pred CCCCCCccCCCCCHHHHHHHHHH-hc-CCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 95 MPLSALSEILDNDFEMKKNTLHN-YL-KNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~-~L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
.+.... .+ .+++.++|+|+++.. +.++.+...+.....+.++|+ |...
T Consensus 98 -----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 98 -----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 111100 01 256789999999754 456667666655455677777 6543
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.27 E-value=1.7e-06 Score=86.04 Aligned_cols=89 Identities=20% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCcccc-ccChhhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLR-KFPEELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~-~lP~~i~~ 313 (351)
..+..+++|++|+++ ++......|..++.+++|++|++++| .+..+| ..++++.+|++|++++|.... .+|..+++
T Consensus 74 ~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 74 KAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred HHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhh
Confidence 345677888888883 33322233666788888888888888 566665 558888888888888854322 57888888
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|+++++.
T Consensus 152 l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 152 LTNLVHVDLSYNY 164 (606)
T ss_dssp CTTCCEEECCSSC
T ss_pred cCCCCEEEccCCc
Confidence 8888888888754
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.27 E-value=1.1e-06 Score=87.31 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccC-hhhh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFP-EELW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP-~~i~ 312 (351)
..+..+++|++|+++ ++ .+..+ |..++.+++|++|++++| .+..+ |..++.+++|++|++++| .+..+| ..++
T Consensus 50 ~~~~~l~~L~~L~Ls-~n-~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 125 (606)
T 3vq2_A 50 YSFSNFSELQWLDLS-RC-EIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIG 125 (606)
T ss_dssp TTTTTCTTCCEEECT-TC-CCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCT
T ss_pred hhccCCccCcEEeCC-CC-cccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCC-ccccccccccC
Confidence 457789999999994 33 33455 556889999999999999 56666 777999999999999996 465666 6789
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|+++++.
T Consensus 126 ~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 126 QLITLKKLNVAHNF 139 (606)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEeCCCCc
Confidence 99999999998864
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.27 E-value=2.7e-06 Score=74.94 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCCCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccCh-hh
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPE-EL 311 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~-~i 311 (351)
...+..+++|++|+++ ++. +..+| ..+..+++|++|++++| .+..+|.. ++.+++|++|+|++| .+..+|. .+
T Consensus 76 ~~~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 151 (251)
T 3m19_A 76 AGVFDDLTELGTLGLA-NNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAF 151 (251)
T ss_dssp TTTTTTCTTCCEEECT-TSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred HhHhccCCcCCEEECC-CCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHc
Confidence 3446789999999994 333 33455 44689999999999999 68888876 689999999999995 6888887 58
Q ss_pred hcCCCCCEEEecCCC
Q 048347 312 WRIKALRKLESWWPR 326 (351)
Q Consensus 312 ~~L~~L~~L~l~~~~ 326 (351)
+++++|++|++++..
T Consensus 152 ~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CcCcCCCEEECCCCc
Confidence 899999999998864
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=1.1e-06 Score=87.10 Aligned_cols=78 Identities=18% Similarity=0.104 Sum_probs=67.9
Q ss_pred CceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEe
Q 048347 243 HLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLES 322 (351)
Q Consensus 243 ~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l 322 (351)
.|++|+++.+ .+..+|. ++.+++|++|+|++| .+..+|..++.|++|++|+|++| .+..+| ++++|++|+.|++
T Consensus 442 ~L~~L~Ls~n--~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHK--DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTS--CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCC--CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEEC
Confidence 5889999433 4445786 899999999999999 68899999999999999999985 677899 8999999999999
Q ss_pred cCCC
Q 048347 323 WWPR 326 (351)
Q Consensus 323 ~~~~ 326 (351)
++..
T Consensus 516 s~N~ 519 (567)
T 1dce_A 516 CNNR 519 (567)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.26 E-value=8.3e-07 Score=91.09 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=48.6
Q ss_pred CCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
..+++|++|+++ ++.....+|..+..+++|++|++++|...+.+|..++.+++|++|++++|...+.+|..++++++|+
T Consensus 463 ~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 463 MYVKTLETLILD-FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGCTTCCEEECC-SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred cCCCCceEEEec-CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 344555555552 2222224455555666666666666643335666666666666666666555456666666666666
Q ss_pred EEEecCC
Q 048347 319 KLESWWP 325 (351)
Q Consensus 319 ~L~l~~~ 325 (351)
.|+++++
T Consensus 542 ~L~Ls~N 548 (768)
T 3rgz_A 542 WLDLNTN 548 (768)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666543
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.26 E-value=1.5e-06 Score=79.08 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.+..+++|++|+++.+ .+..++. +..+++|++|++++| .+..+| .++.+++|++|++++| .+..+|. +.++++
T Consensus 58 ~~~~l~~L~~L~L~~n--~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~ 130 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDN--QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSN 130 (308)
T ss_dssp TGGGCTTCCEEECCSS--CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTT
T ss_pred hhhccCCCCEEEccCC--cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCC
Confidence 3444555555555222 2223333 445555555555555 344444 3444555555555543 2333432 444444
Q ss_pred CCEEEecC
Q 048347 317 LRKLESWW 324 (351)
Q Consensus 317 L~~L~l~~ 324 (351)
|++|++++
T Consensus 131 L~~L~l~~ 138 (308)
T 1h6u_A 131 LQVLYLDL 138 (308)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 44444444
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.26 E-value=2.4e-06 Score=77.82 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=53.5
Q ss_pred CCCCCceEEEEecccccCceeeeCCCCC-----CcccEEEEecCCcccccc-ccccccCCccEEeecCCccccc--cChh
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCGHGGF-----PRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRK--FPEE 310 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~~~~l-----~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~--lP~~ 310 (351)
..+++|++|+++.+.... +|..++.+ ++|++|++++| .+..+| ..++.+++|++|++++|...+. +|..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred hcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 667777777774433222 24434444 67777777777 455555 4577777777777777543333 4555
Q ss_pred h--hcCCCCCEEEecCCC
Q 048347 311 L--WRIKALRKLESWWPR 326 (351)
Q Consensus 311 i--~~L~~L~~L~l~~~~ 326 (351)
+ +++++|++|+++++.
T Consensus 195 ~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SCTTSCTTCCEEECTTSC
T ss_pred HHhccCCCCCEEECCCCc
Confidence 5 677777777777754
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=4.3e-07 Score=94.13 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=64.3
Q ss_pred CCCCCCCCceEEEEecccccCc----------------eeeeCCC--CCCcccEEEEecCCccccccccccccCCccEEe
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGR----------------KLVCGHG--GFPRQEILHLKSMLWLEEWKMETGAMQKLKSLI 297 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~----------------~lp~~~~--~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 297 (351)
+.++++++|++|+|+.+...+. .+|..++ .+++|++|+|++|...+.+|..+++|++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 3567788888888854443331 2677777 888888888888866677887788888888888
Q ss_pred ecCCcccc--ccChhhhcCC-------CCCEEEecCCC
Q 048347 298 VNPCAYLR--KFPEELWRIK-------ALRKLESWWPR 326 (351)
Q Consensus 298 l~~c~~l~--~lP~~i~~L~-------~L~~L~l~~~~ 326 (351)
|++|..+. .+|.++++++ +|++|+++++.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 88765243 4777776665 77777777654
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.25 E-value=1.8e-06 Score=89.42 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChh--h
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEE--L 311 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~--i 311 (351)
..+..+++|++|+++ ++.....+ |..++++++|++|+|++| .+..+ |..++.+++|++|+|++|.....+|.+ +
T Consensus 42 ~~~~~l~~L~~LdLs-~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 42 SSFPFLEQLQLLELG-SQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSCSSCCSCSEEEEC-TTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hHCcccccCeEEeCC-CCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 344556666666663 33223344 344556666666666665 34333 445566666666666654333334443 5
Q ss_pred hcCCCCCEEEecCC
Q 048347 312 WRIKALRKLESWWP 325 (351)
Q Consensus 312 ~~L~~L~~L~l~~~ 325 (351)
++|++|++|+++++
T Consensus 120 ~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 120 RNLKALTRLDLSKN 133 (844)
T ss_dssp SSCSSCCEEEEESC
T ss_pred cccCCCCEEECCCC
Confidence 55566666665553
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.24 E-value=1.7e-06 Score=85.91 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=44.3
Q ss_pred CCCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWR 313 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~ 313 (351)
.+..+++|++|+|+ ++ .+..+|. .+.++++|++|+|++| .+..+|.. ++.|.+|++|++++| .+..+|.. +++
T Consensus 71 ~f~~l~~L~~L~Ls-~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~ 146 (635)
T 4g8a_A 71 SFFSFPELQVLDLS-RC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH 146 (635)
T ss_dssp TTTTCTTCCEEECT-TC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTT
T ss_pred HHhCCCCCCEEECC-CC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhc
Confidence 34555666666662 22 2334433 3455566666666665 45555543 455666666666653 34445442 455
Q ss_pred CCCCCEEEecC
Q 048347 314 IKALRKLESWW 324 (351)
Q Consensus 314 L~~L~~L~l~~ 324 (351)
|++|++|++++
T Consensus 147 L~~L~~L~Ls~ 157 (635)
T 4g8a_A 147 LKTLKELNVAH 157 (635)
T ss_dssp CTTCCEEECCS
T ss_pred CcccCeecccc
Confidence 55566665554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.24 E-value=2.2e-06 Score=76.79 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChh-hhc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEE-LWR 313 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~ 313 (351)
.+..+++|++|+++ ++.....+ |..+..+++|++|++++| .+..+ |..++.+++|++|++++| .+..+|.. +++
T Consensus 75 ~~~~l~~L~~L~l~-~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 151 (285)
T 1ozn_A 75 AFTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRD 151 (285)
T ss_dssp TTTTCTTCCEEECC-SCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hcCCccCCCEEeCC-CCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhcc
Confidence 45566667777763 33223333 445666677777777776 35444 344666777777777764 45555543 566
Q ss_pred CCCCCEEEecCC
Q 048347 314 IKALRKLESWWP 325 (351)
Q Consensus 314 L~~L~~L~l~~~ 325 (351)
+++|++|++++.
T Consensus 152 l~~L~~L~l~~n 163 (285)
T 1ozn_A 152 LGNLTHLFLHGN 163 (285)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCccEEECCCC
Confidence 777777777664
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.23 E-value=2.2e-06 Score=83.49 Aligned_cols=86 Identities=16% Similarity=0.023 Sum_probs=67.0
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccc-ccChhhhcCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLR-KFPEELWRIK 315 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~-~lP~~i~~L~ 315 (351)
.+..+++|++|+++ ++......|..++.+++|++|++++| .+..+|.. .+++|++|++++|.... .+|..+++++
T Consensus 40 ~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 40 DILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp HHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred hccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEeccCCccccccchhhhccCC
Confidence 35678899999994 33333233667889999999999998 68888876 88999999999865333 4678999999
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|++++..
T Consensus 116 ~L~~L~L~~n~ 126 (520)
T 2z7x_B 116 QLKFLGLSTTH 126 (520)
T ss_dssp TCCEEEEEESS
T ss_pred cceEEEecCcc
Confidence 99999998865
No 62
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=1.4e-06 Score=72.59 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=39.4
Q ss_pred CCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-+.++||++.++++.+.+.... .+.+.|+|+.|+|||++|+.+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 34669999999999999987643 345678999999999999999877
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.21 E-value=1.3e-06 Score=82.06 Aligned_cols=87 Identities=15% Similarity=0.019 Sum_probs=54.5
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.+..+++|+.|+++ ++......|..+..+++|++|++++| .+..+|..++.+++|++|++++| .+..+|..++++++
T Consensus 243 ~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 243 WLLNYPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR 319 (390)
T ss_dssp GGGGCTTCSEEECC-SSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTT
T ss_pred HHcCCCCccEEECC-CCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCc
Confidence 34556677777773 33222233555666777777777776 56666666666777777777764 46666766666666
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|++|++++.+
T Consensus 320 L~~L~L~~N~ 329 (390)
T 3o6n_A 320 LENLYLDHNS 329 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCc
Confidence 7776666654
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.21 E-value=3.3e-06 Score=75.65 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=45.9
Q ss_pred CCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccCh-hhhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPE-ELWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L 314 (351)
+..+++|++|+++ ++ .+..+|. .+..+++|++|++++| .+..+ |..++.+++|+.|++++| .+..+|. .+.++
T Consensus 149 ~~~l~~L~~L~l~-~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 224 (285)
T 1ozn_A 149 FRDLGNLTHLFLH-GN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPL 224 (285)
T ss_dssp TTTCTTCCEEECC-SS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTC
T ss_pred hccCCCccEEECC-CC-cccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccC
Confidence 4455666666662 22 2234443 2555666666666666 34433 545666666666666664 3444553 35666
Q ss_pred CCCCEEEecCC
Q 048347 315 KALRKLESWWP 325 (351)
Q Consensus 315 ~~L~~L~l~~~ 325 (351)
++|+.|++++.
T Consensus 225 ~~L~~L~l~~N 235 (285)
T 1ozn_A 225 RALQYLRLNDN 235 (285)
T ss_dssp TTCCEEECCSS
T ss_pred cccCEEeccCC
Confidence 66666666654
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.21 E-value=2.1e-06 Score=85.42 Aligned_cols=88 Identities=17% Similarity=0.021 Sum_probs=66.3
Q ss_pred CCCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
..++.+++|++|+|+ ++. +..+| ..++.+++|++|+|++| .+..+|.. ++.+++|++|+|++|......|..+++
T Consensus 93 ~~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 93 YAFAYAHTIQKLYMG-FNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp TTTTTCTTCCEEECC-SSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred HHhcCCCCCCEEECC-CCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 467788999999994 333 33344 44688899999999998 68888877 488999999999986543444456888
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|+++++.
T Consensus 170 l~~L~~L~L~~N~ 182 (597)
T 3oja_B 170 TTSLQNLQLSSNR 182 (597)
T ss_dssp CTTCCEEECTTSC
T ss_pred CCcCcEEECcCCC
Confidence 9999999988764
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.21 E-value=4.1e-06 Score=74.73 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=39.7
Q ss_pred CCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L 314 (351)
+..+++|++|+++.+ .+..+|.. ++.+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|.. ++++
T Consensus 129 ~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 204 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHN--QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRL 204 (272)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred hccCCCCCEEECCCC--ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCC
Confidence 344555555555222 12233322 345555555555555 34444433 355555555555553 23334332 3555
Q ss_pred CCCCEEEecC
Q 048347 315 KALRKLESWW 324 (351)
Q Consensus 315 ~~L~~L~l~~ 324 (351)
++|+.|++++
T Consensus 205 ~~L~~L~l~~ 214 (272)
T 3rfs_A 205 TSLQYIWLHD 214 (272)
T ss_dssp TTCCEEECCS
T ss_pred cCCCEEEccC
Confidence 5555555554
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.20 E-value=4.3e-06 Score=74.55 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCCCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~ 312 (351)
..+..+++|++|+++ ++. +..+|. .++.+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|.. ++
T Consensus 103 ~~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 178 (272)
T 3rfs_A 103 GVFDKLTNLKELVLV-ENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFD 178 (272)
T ss_dssp TTTTTCTTCCEEECT-TSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred hHhcCCcCCCEEECC-CCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhc
Confidence 346789999999994 333 334554 3788999999999999 68888766 689999999999996 56677765 58
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|+++++.
T Consensus 179 ~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQ 192 (272)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCccCCEEECCCCc
Confidence 99999999998764
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.20 E-value=3.1e-06 Score=75.52 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccc--cChhhh
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRK--FPEELW 312 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~--lP~~i~ 312 (351)
.+..+++|++|+++ ++. +..++ ..+..+++|++|++++| .+..++. .++.+++|++|++++| .+.. +|..++
T Consensus 71 ~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~ 146 (276)
T 2z62_A 71 AYQSLSHLSTLILT-GNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFS 146 (276)
T ss_dssp TTTTCTTCCEEECT-TCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGG
T ss_pred HccCCcCCCEEECC-CCc-cCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCC-ccceecCchhhc
Confidence 45677888888883 332 33343 45777888888888888 5666655 5788888888888885 4544 688888
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++..
T Consensus 147 ~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 147 NLTNLEHLDLSSNK 160 (276)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCC
Confidence 88899999888754
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.19 E-value=3.4e-06 Score=76.17 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
+..+++|++|+++.+ .+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++| .+..+| .+.++++|
T Consensus 64 ~~~l~~L~~L~L~~n--~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L 136 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGN--KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQL 136 (291)
T ss_dssp GGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTC
T ss_pred HhcCCCCCEEEccCC--ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCC
Confidence 444555555555222 1222332 445555555555554 3444442 444455555555543 233332 34444444
Q ss_pred CEEEecC
Q 048347 318 RKLESWW 324 (351)
Q Consensus 318 ~~L~l~~ 324 (351)
+.|++++
T Consensus 137 ~~L~l~~ 143 (291)
T 1h6t_A 137 ESLYLGN 143 (291)
T ss_dssp CEEECCS
T ss_pred CEEEccC
Confidence 4444444
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.19 E-value=4.4e-06 Score=74.39 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcCC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRIK 315 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~ 315 (351)
..+++|++|+++.+ .+..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++| .+..+|.+ +.+++
T Consensus 130 ~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 130 DSLTKLTYLSLGYN--ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLE 205 (270)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CcCcCCCEEECCCC--cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhcccc
Confidence 34455555555221 12223322 344555555555555 34444433 445555555555553 34444443 34455
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|+.|++++
T Consensus 206 ~L~~L~l~~ 214 (270)
T 2o6q_A 206 KLKMLQLQE 214 (270)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEecC
Confidence 555555544
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.19 E-value=1.9e-06 Score=82.45 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccc-ccccc--ccccCCccEEeecCCcccccc-Chh-hh
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLE-EWKME--TGAMQKLKSLIVNPCAYLRKF-PEE-LW 312 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~-~lp~~--i~~L~~L~~L~l~~c~~l~~l-P~~-i~ 312 (351)
+..+++|++|+++ ++......|..++.+++|++|++++|. +. ..|.. ++.+++|++|++++|. +..+ |.. ++
T Consensus 75 ~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 151 (455)
T 3v47_A 75 FRGLSSLIILKLD-YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFL 151 (455)
T ss_dssp TTTCTTCCEEECT-TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGG
T ss_pred ccccccCCEEeCC-CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccC
Confidence 4555666666662 222222234455566666666666663 33 23433 5566666666666643 3333 443 55
Q ss_pred cCCCCCEEEecCC
Q 048347 313 RIKALRKLESWWP 325 (351)
Q Consensus 313 ~L~~L~~L~l~~~ 325 (351)
++++|++|++++.
T Consensus 152 ~l~~L~~L~L~~n 164 (455)
T 3v47_A 152 NMRRFHVLDLTFN 164 (455)
T ss_dssp GCTTCCEEECTTC
T ss_pred CCCcccEEeCCCC
Confidence 6666666666654
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.19 E-value=2.2e-06 Score=72.60 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=68.0
Q ss_pred CCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccCh-hhhcCCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPE-ELWRIKALR 318 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~L~ 318 (351)
.++|+.|+++.+ .+..+|..+..+++|++|+|++| .+..+|. .++.+++|++|+|++| .+..+|. .+.++++|+
T Consensus 30 ~~~l~~L~L~~n--~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGN--QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSS--CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCC--cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCC
Confidence 368999999433 34478888899999999999999 6887775 4899999999999995 5777765 688999999
Q ss_pred EEEecCCC
Q 048347 319 KLESWWPR 326 (351)
Q Consensus 319 ~L~l~~~~ 326 (351)
+|++++..
T Consensus 106 ~L~L~~N~ 113 (193)
T 2wfh_A 106 LLSLHGND 113 (193)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99998754
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.19 E-value=3.2e-06 Score=83.10 Aligned_cols=87 Identities=23% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCcccc--ccChhh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLR--KFPEEL 311 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~--~lP~~i 311 (351)
..+..+++|++|+++ ++. +..+| ..++.+++|++|++++| .+..+|. .++.+++|++|++++|. +. .+|..+
T Consensus 70 ~~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~ 145 (570)
T 2z63_A 70 GAYQSLSHLSTLILT-GNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF 145 (570)
T ss_dssp TTTTTCTTCCEEECT-TCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGG
T ss_pred ccccCchhCCEEeCc-CCc-CCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhh
Confidence 346678888888883 332 33444 45778888888888888 5777765 58888899999998854 44 478888
Q ss_pred hcCCCCCEEEecCCC
Q 048347 312 WRIKALRKLESWWPR 326 (351)
Q Consensus 312 ~~L~~L~~L~l~~~~ 326 (351)
+++++|++|+++++.
T Consensus 146 ~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 146 SNLTNLEHLDLSSNK 160 (570)
T ss_dssp GGCTTCCEEECTTSC
T ss_pred cccCCCCEEeCcCCc
Confidence 999999999988764
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.19 E-value=4.8e-06 Score=71.95 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=71.0
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChh-h
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEE-L 311 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~-i 311 (351)
...+..+++|++|+|+.+ .+..+|.. +..+++|++|+|++| .+..+ |..++.+++|++|+|++| .+..+|.+ +
T Consensus 73 ~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 148 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGN--KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTF 148 (220)
T ss_dssp TTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred HHHhhCCcCCCEEECCCC--cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHH
Confidence 356788999999999443 34466665 578999999999999 57766 456899999999999995 57777764 7
Q ss_pred hcCCCCCEEEecCCC
Q 048347 312 WRIKALRKLESWWPR 326 (351)
Q Consensus 312 ~~L~~L~~L~l~~~~ 326 (351)
..+++|++|++++.+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 889999999998754
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.18 E-value=2.9e-06 Score=79.59 Aligned_cols=87 Identities=17% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCcccccc-Chhhh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKF-PEELW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~l-P~~i~ 312 (351)
..+..+++|++|+++ ++. +..+ |..++.+++|++|++++| .+..+|.. ++.+++|++|++++|. +..+ |..++
T Consensus 87 ~~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 162 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMG-FNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ 162 (390)
T ss_dssp TTTTTCTTCCEEECC-SSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTS
T ss_pred hhccCCCCcCEEECC-CCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhcc
Confidence 456778888888883 332 3334 444778888888888888 67888877 4788888888888854 4455 44578
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++..
T Consensus 163 ~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 163 ATTSLQNLQLSSNR 176 (390)
T ss_dssp SCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc
Confidence 88888888888754
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.18 E-value=1.9e-06 Score=79.77 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=45.9
Q ss_pred CCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccCh--hhh
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPE--ELW 312 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~--~i~ 312 (351)
.+..+++|++|+++ ++ .+..+ |..+..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|. .++
T Consensus 71 ~~~~l~~L~~L~L~-~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 146 (353)
T 2z80_A 71 DLQRCVNLQALVLT-SN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFS 146 (353)
T ss_dssp TTTTCTTCCEEECT-TS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCT
T ss_pred HhccCCCCCEEECC-CC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhc
Confidence 34556666666662 22 22233 233555666666666665 45555554 555666666666653 4555554 455
Q ss_pred cCCCCCEEEecCC
Q 048347 313 RIKALRKLESWWP 325 (351)
Q Consensus 313 ~L~~L~~L~l~~~ 325 (351)
++++|++|+++++
T Consensus 147 ~l~~L~~L~l~~n 159 (353)
T 2z80_A 147 HLTKLQILRVGNM 159 (353)
T ss_dssp TCTTCCEEEEEES
T ss_pred cCCCCcEEECCCC
Confidence 5666666666554
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.17 E-value=4.9e-07 Score=82.96 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=52.4
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccc--ccChhhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLR--KFPEELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~--~lP~~i~~ 313 (351)
+.+..+++|++|+++.+......+|..+..+++|++|++++|......|..++.+++|++|++++|..+. .+|..+.+
T Consensus 87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 3345667777777733222212255556666677777777663222455556666677777776664444 35555666
Q ss_pred CCCCCEEEecCC
Q 048347 314 IKALRKLESWWP 325 (351)
Q Consensus 314 L~~L~~L~l~~~ 325 (351)
+++|++|+++++
T Consensus 167 ~~~L~~L~l~~~ 178 (336)
T 2ast_B 167 CSRLDELNLSWC 178 (336)
T ss_dssp CTTCCEEECCCC
T ss_pred CCCCCEEcCCCC
Confidence 666666666665
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.17 E-value=5.6e-06 Score=73.68 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=57.5
Q ss_pred CCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L 314 (351)
+..+++|++|+++.+ .+..+|. .+..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|.+ ++++
T Consensus 81 ~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 156 (270)
T 2o6q_A 81 FKELKNLETLWVTDN--KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKL 156 (270)
T ss_dssp TSSCTTCCEEECCSS--CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hcCCCCCCEEECCCC--cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCC
Confidence 355677777777322 2334443 3567778888888877 56666554 677888888888874 56677765 5778
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|++|++++..
T Consensus 157 ~~L~~L~L~~n~ 168 (270)
T 2o6q_A 157 TSLKELRLYNNQ 168 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cccceeEecCCc
Confidence 888888887653
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.17 E-value=2.6e-06 Score=81.78 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=27.6
Q ss_pred CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhhcCCCCCEEEecCC
Q 048347 263 HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWP 325 (351)
Q Consensus 263 ~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~ 325 (351)
+..+++|++|++++|..++.+|.. ++.+++|++|++++| .+..+| .+..+++|+.|++++.
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTS
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCC
Confidence 334444444444443334444432 444445555555442 344444 2445555555555543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.16 E-value=5.1e-06 Score=74.98 Aligned_cols=86 Identities=22% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
..+..+++|++|+++.+ .+..+|.. +..+++|++|++++| .+..+|.. +..+++|++|+|++| .+..+|.++..
T Consensus 118 ~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~ 193 (290)
T 1p9a_G 118 GALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFG 193 (290)
T ss_dssp STTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred HHHcCCCCCCEEECCCC--CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcc
Confidence 34567788888888333 23345443 567788888888888 67788876 467888888888874 67788888888
Q ss_pred CCCCCEEEecCC
Q 048347 314 IKALRKLESWWP 325 (351)
Q Consensus 314 L~~L~~L~l~~~ 325 (351)
+.+|+.|++++.
T Consensus 194 ~~~L~~l~L~~N 205 (290)
T 1p9a_G 194 SHLLPFAFLHGN 205 (290)
T ss_dssp TCCCSEEECCSC
T ss_pred cccCCeEEeCCC
Confidence 888888888763
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.16 E-value=1.7e-06 Score=86.22 Aligned_cols=88 Identities=15% Similarity=0.020 Sum_probs=55.8
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+.+..+++|+.|+++ ++......|..++.+++|++|+|++| .+..+|..++.+++|++|+|++| .+..+|..++.++
T Consensus 248 ~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~ 324 (597)
T 3oja_B 248 AWLLNYPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 324 (597)
T ss_dssp GGGGGCTTCSEEECC-SSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred hhhccCCCCCEEECC-CCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCC
Confidence 334566777777773 33333334555667777777777776 56666666666777777777764 4556776666666
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|+.|+++++.
T Consensus 325 ~L~~L~L~~N~ 335 (597)
T 3oja_B 325 RLENLYLDHNS 335 (597)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 67766666644
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.15 E-value=2.8e-06 Score=74.08 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=39.3
Q ss_pred CCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEec-CCccccccc-cccccCCccEEeecCCccccccChhhhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKS-MLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~-~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
+..+++|++|+++ ++..+..++. .+..+++|++|++++ | .+..+|. .++.+++|++|++++| .+..+|. ++++
T Consensus 51 ~~~l~~L~~L~l~-~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l 126 (239)
T 2xwt_C 51 FSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKV 126 (239)
T ss_dssp TTTCTTCCEEEEE-CCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTC
T ss_pred ccCCCCCcEEeCC-CCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccc
Confidence 4445555555552 2222333433 244555555555555 3 4555443 2445555555555553 3444443 4444
Q ss_pred CCCC---EEEecCC
Q 048347 315 KALR---KLESWWP 325 (351)
Q Consensus 315 ~~L~---~L~l~~~ 325 (351)
++|+ .|++++.
T Consensus 127 ~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 127 YSTDIFFILEITDN 140 (239)
T ss_dssp CBCCSEEEEEEESC
T ss_pred cccccccEEECCCC
Confidence 4444 5544443
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.15 E-value=3.4e-06 Score=83.24 Aligned_cols=85 Identities=20% Similarity=0.106 Sum_probs=65.5
Q ss_pred CCCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccccc--Chhhh
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKF--PEELW 312 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l--P~~i~ 312 (351)
..+..+++|++|+++ ++ .+..+ |..+..+++|++|++++| .+..+|.. .+++|++|++++| .+..+ |..++
T Consensus 70 ~~~~~l~~L~~L~Ls-~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~ 143 (562)
T 3a79_B 70 PDISFLSELRVLRLS-HN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFG 143 (562)
T ss_dssp GGTTTCTTCCEEECC-SC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGG
T ss_pred hhhccCCCccEEECC-CC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCC-CccccCchHhhc
Confidence 356788899999994 33 33344 556888899999999998 58888876 7899999999985 45554 47888
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++..
T Consensus 144 ~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 144 NLTKLTFLGLSAAK 157 (562)
T ss_dssp GCTTCCEEEEECSB
T ss_pred ccCcccEEecCCCc
Confidence 99999999998754
No 84
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.15 E-value=4.1e-06 Score=75.80 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=39.8
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChhhhcC-C
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEELWRI-K 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L-~ 315 (351)
+..+++|++|+++ ++......|..+..+++|++|++++| .+..+|. .++.+++|++|++++|......|..+.++ +
T Consensus 171 ~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 171 FTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp CTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred HhhCcCCCEEECC-CCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 3445555555552 22111112334445555555555555 3444433 34555555555555543333344445555 3
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|++|++++
T Consensus 249 ~L~~L~L~~ 257 (306)
T 2z66_A 249 SLAFLNLTQ 257 (306)
T ss_dssp TCCEEECTT
T ss_pred cCCEEEccC
Confidence 555555555
No 85
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.14 E-value=5.9e-06 Score=76.89 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=41.7
Q ss_pred ccccccCCCCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 8 DNFRGLSWDNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 8 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++...+ .+++|+++.++.+...+..+. ....+.|+|+.|+||||+|+.+.+.
T Consensus 8 ~k~rp~~~--~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 8 RKWRPQTF--ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp HHTCCCST--TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhhCCCch--hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444433 459999999999999997653 2346779999999999999999775
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.14 E-value=4.3e-06 Score=76.97 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=47.1
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+.+..+++|++|+++ ++ ....++. +..+++|++|++++| .+..+| .++.+++|++|++++| .+..+|. +.+++
T Consensus 60 ~~~~~~~~L~~L~l~-~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLN-GN-QITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNED-NISDISP-LANLT 132 (347)
T ss_dssp TTGGGCTTCCEEECC-SS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCT
T ss_pred hhhhhcCCccEEEcc-CC-ccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCC-cccCchh-hccCC
Confidence 345556667777773 22 2333443 566666666666666 455555 4666666666666653 3555554 55566
Q ss_pred CCCEEEecCC
Q 048347 316 ALRKLESWWP 325 (351)
Q Consensus 316 ~L~~L~l~~~ 325 (351)
+|++|+++++
T Consensus 133 ~L~~L~l~~n 142 (347)
T 4fmz_A 133 KMYSLNLGAN 142 (347)
T ss_dssp TCCEEECTTC
T ss_pred ceeEEECCCC
Confidence 6666666554
No 87
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.14 E-value=5.1e-06 Score=76.61 Aligned_cols=88 Identities=13% Similarity=-0.055 Sum_probs=70.5
Q ss_pred CCCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChhhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~ 313 (351)
|.++.+++|+.|+|+ +.-.+..+| ..+..+++|++|+|++| .+..+|. .++.|++|++|+|++ ..+..+|.++..
T Consensus 25 p~l~~~~~L~~L~l~-~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~ 101 (347)
T 2ifg_A 25 HHLPGAENLTELYIE-NQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ 101 (347)
T ss_dssp TTSCSCSCCSEEECC-SCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred CCCCCCCCeeEEEcc-CCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence 337888999999993 323444666 56899999999999999 6877766 479999999999998 578899988766
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
..+|+.|++.+.+
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 5559999998743
No 88
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.13 E-value=3.7e-06 Score=80.36 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=39.8
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
++.+++|++|+++ ++......|..+..+++|++|++++| .+..+ |..++.+++|++|++++|......|..++++++
T Consensus 295 ~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 4455555555552 22222122334455555555555555 33433 333455555555555554322222444555555
Q ss_pred CCEEEecC
Q 048347 317 LRKLESWW 324 (351)
Q Consensus 317 L~~L~l~~ 324 (351)
|++|++++
T Consensus 373 L~~L~L~~ 380 (455)
T 3v47_A 373 LKELALDT 380 (455)
T ss_dssp CCEEECCS
T ss_pred ccEEECCC
Confidence 55555554
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.13 E-value=3.9e-06 Score=80.89 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChhhhcCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+..+++|++|+|+.+ .+..+|.. +..+++|++|++++|. +..+ |..++.+++|++|++++|......|..+.+++
T Consensus 76 ~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 76 FNNLFNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTCTTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhCCccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 344455555555211 12233322 3445555555555552 3322 33345555555555555322222233455566
Q ss_pred CCCEEEecCC
Q 048347 316 ALRKLESWWP 325 (351)
Q Consensus 316 ~L~~L~l~~~ 325 (351)
+|++|+++++
T Consensus 153 ~L~~L~l~~n 162 (477)
T 2id5_A 153 SLEQLTLEKC 162 (477)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 6666666554
No 90
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.13 E-value=2.5e-06 Score=83.57 Aligned_cols=85 Identities=20% Similarity=0.098 Sum_probs=46.4
Q ss_pred CCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCcccc--ccChhhh
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLR--KFPEELW 312 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~--~lP~~i~ 312 (351)
.+..+++|++|+++ ++. +..++ ..++.+++|++|++++| .+..+|.. ++.+++|++|++++|. +. ..|..++
T Consensus 45 ~~~~l~~L~~L~Ls-~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 120 (549)
T 2z81_A 45 DLRACANLQVLILK-SSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFP 120 (549)
T ss_dssp TTSSCTTCCEEECT-TSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCT
T ss_pred hhhcCCcccEEECC-CCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhh
Confidence 44566666666662 222 22332 34566666666666666 35544443 6666666666666542 33 2345556
Q ss_pred cCCCCCEEEecCC
Q 048347 313 RIKALRKLESWWP 325 (351)
Q Consensus 313 ~L~~L~~L~l~~~ 325 (351)
++++|++|+++++
T Consensus 121 ~l~~L~~L~L~~n 133 (549)
T 2z81_A 121 NLTNLQTLRIGNV 133 (549)
T ss_dssp TCTTCCEEEEEES
T ss_pred ccCCccEEECCCC
Confidence 6666666666554
No 91
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.12 E-value=3.3e-06 Score=76.48 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=59.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccCh-hhhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPE-ELWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~ 313 (351)
..+..+++|++|+++.+......+|..+..+++|++|++++| .+..+ |..++.+++|++|++++| .+..+|. .+.+
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 221 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKC 221 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccC
Confidence 345667777777774333322246666777788888888887 45555 555777888888888875 3555544 5677
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|+.|++++..
T Consensus 222 l~~L~~L~L~~N~ 234 (306)
T 2z66_A 222 LNSLQVLDYSLNH 234 (306)
T ss_dssp CTTCCEEECTTSC
T ss_pred cccCCEeECCCCC
Confidence 7888888887654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.11 E-value=5.3e-06 Score=75.48 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=45.5
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
+..+++|++|+++.+ .+..++. +..+++|++|++++| .+..+|. ++.+++|+.|++++| .+..+|. +.++++|
T Consensus 125 l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L 197 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLN--QITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNL 197 (308)
T ss_dssp GTTCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTC
T ss_pred hcCCCCCCEEECCCC--ccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCC
Confidence 455666666666322 2222332 455566666666666 4555554 566666666666653 3555553 5566666
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|+++++.
T Consensus 198 ~~L~L~~N~ 206 (308)
T 1h6u_A 198 IEVHLKNNQ 206 (308)
T ss_dssp CEEECTTSC
T ss_pred CEEEccCCc
Confidence 666666544
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.11 E-value=5e-06 Score=73.89 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=35.1
Q ss_pred CcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 267 PRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 267 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
++|++|++++| .+..+| .++.+++|+.|++++| .+..+| .++++++|++|+++++.
T Consensus 106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC
T ss_pred CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc
Confidence 45555555555 455554 4666777777777764 466665 56777777777777654
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.10 E-value=5.5e-06 Score=74.78 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=42.9
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
+..+++|++|+++.+ .+..++ .+..+++|++|++++| .+..++ .++.+++|+.|++++| .+..+|. +.++++|
T Consensus 108 l~~l~~L~~L~L~~n--~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHN--GISDIN-GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKL 180 (291)
T ss_dssp GTTCTTCCEEECTTS--CCCCCG-GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTC
T ss_pred hccCCCCCEEECCCC--cCCCCh-hhcCCCCCCEEEccCC-cCCcch-hhccCCCCCEEEccCC-ccccchh-hcCCCcc
Confidence 455566666666222 122232 3445556666666665 455542 4555666666666653 3444544 5566666
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|+++++.
T Consensus 181 ~~L~L~~N~ 189 (291)
T 1h6t_A 181 QNLYLSKNH 189 (291)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 666665543
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.10 E-value=5.2e-06 Score=79.91 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=59.4
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcC
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
++.+..+++|++|+++.+ ....+|. +..+++|++|++++| .+..+|. ++++++|++|++++| .+..+|. +.++
T Consensus 61 l~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l 133 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNN--QLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNL 133 (466)
T ss_dssp CTTGGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred CcchhhhcCCCEEECCCC--ccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCC
Confidence 445667788888888332 3334554 777888888888887 5666665 778888888888875 5666665 7777
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|++|+++++.
T Consensus 134 ~~L~~L~l~~n~ 145 (466)
T 1o6v_A 134 TNLNRLELSSNT 145 (466)
T ss_dssp TTCSEEEEEEEE
T ss_pred CCCCEEECCCCc
Confidence 888888777654
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.10 E-value=4e-06 Score=83.58 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=31.1
Q ss_pred CCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecCCC
Q 048347 263 HGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 263 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
+..+++|++|+|++| .+..+| .++.|++|+.|+|++| .+..+ ..+++|++|+.|+++++.
T Consensus 105 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp STTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSC
T ss_pred hccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCc
Confidence 445555555555555 344443 3555555555555553 34444 345555666666665543
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.09 E-value=8e-06 Score=72.58 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=29.2
Q ss_pred CCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecC
Q 048347 263 HGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWW 324 (351)
Q Consensus 263 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 324 (351)
+..+++|++|++++| .+..+| .++.+++|++|++++| .+..+ ..+.++++|+.|++++
T Consensus 124 l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 124 LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEE
T ss_pred hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCC
Confidence 445555555555555 344444 3555555555555553 33333 3445555555555544
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.08 E-value=5.5e-06 Score=75.58 Aligned_cols=82 Identities=15% Similarity=0.002 Sum_probs=66.5
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCE
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRK 319 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 319 (351)
.+++|++|+++ ++ .+..++. ...+++|++|++++| .+..+|..++.+++|++|++++| .+..+|..+..+++|+.
T Consensus 167 ~l~~L~~L~L~-~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 SSDTLEHLNLQ-YN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GTTTCCEEECT-TS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCE
T ss_pred ccCcCCEEECC-CC-cCccccc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCE
Confidence 57888888883 32 3445554 345889999999998 68888888999999999999985 67889999999999999
Q ss_pred EEecCCC
Q 048347 320 LESWWPR 326 (351)
Q Consensus 320 L~l~~~~ 326 (351)
|++++.+
T Consensus 242 L~l~~N~ 248 (317)
T 3o53_A 242 FDLRGNG 248 (317)
T ss_dssp EECTTCC
T ss_pred EEccCCC
Confidence 9998865
No 99
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.08 E-value=4.6e-06 Score=79.69 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChhhhcC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
.+..+++|++|+++ ++ .+..+|. .+..+++|++|++++|..+..+|.. ++.+++|++|++++| .+..+| .+.++
T Consensus 131 ~~~~l~~L~~L~L~-~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l 206 (440)
T 3zyj_A 131 AFVYLSKLKELWLR-NN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPL 206 (440)
T ss_dssp TSCSCSSCCEEECC-SC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTC
T ss_pred HhhccccCceeeCC-CC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCC
Confidence 35566777777773 22 2334443 4666777777777776566666653 667777777777774 566676 46777
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|+.|++++..
T Consensus 207 ~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 207 IKLDELDLSGNH 218 (440)
T ss_dssp SSCCEEECTTSC
T ss_pred cccCEEECCCCc
Confidence 777788777654
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.08 E-value=5.6e-06 Score=73.78 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCccccccCh-hhhc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRKFPE-ELWR 313 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~ 313 (351)
.+..+++|++|+++ ++ .+..++. .+..+++|++|++++| .+..+| ..++.+++|++|++++| .+..+|. .+++
T Consensus 47 ~~~~l~~L~~L~l~-~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 122 (276)
T 2z62_A 47 SFFSFPELQVLDLS-RC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH 122 (276)
T ss_dssp TTTTCTTCSEEECT-TC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTT
T ss_pred HhccccCCcEEECC-CC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCC-CccccCchhccc
Confidence 56788999999993 33 3445554 5788999999999999 577666 45889999999999985 4666665 6889
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|++++..
T Consensus 123 l~~L~~L~l~~n~ 135 (276)
T 2z62_A 123 LKTLKELNVAHNL 135 (276)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECcCCc
Confidence 9999999998754
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.08 E-value=1.2e-06 Score=80.42 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred CCCCCCCceEEEEecccccCc--eeeeCCCCCCcccEEEEecCCcccc--ccccccccC-CccEEeecCCc-cc--cccC
Q 048347 237 APEKLPHLKVLKLKRSSYSGR--KLVCGHGGFPRQEILHLKSMLWLEE--WKMETGAMQ-KLKSLIVNPCA-YL--RKFP 308 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~L~-~L~~L~l~~c~-~l--~~lP 308 (351)
.+..+++|++|++ .++.... .++..+..+++|++|++++|..+.. +|..++.++ +|++|++++|. .+ ..+|
T Consensus 137 ~l~~~~~L~~L~L-~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 137 TLAKNSNLVRLNL-SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp HHTTCTTCSEEEC-TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred HHhcCCCCCEEEC-CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 3456788888888 3442222 3555566778888888888844553 666677888 88888888864 23 5667
Q ss_pred hhhhcCCCCCEEEecCCC---hhHHhhccccccCceeeE
Q 048347 309 EELWRIKALRKLESWWPR---PELRQSLHKFEEIDRLDM 344 (351)
Q Consensus 309 ~~i~~L~~L~~L~l~~~~---~~~~~~l~~~~~~~~~~~ 344 (351)
..+.++++|++|+++++. .+....+..+...+...+
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 777788888888888876 233444444444433333
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.08 E-value=6.7e-06 Score=71.66 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=68.5
Q ss_pred CCceEEEEecccccCceeee-CCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccCh-hhhcCCCCC
Q 048347 242 PHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPE-ELWRIKALR 318 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~L~ 318 (351)
++|++|+++.+ .+..+|. .+..+++|++|++++|..++.+|. .++.+++|++|++++|..+..+|. .+.++++|+
T Consensus 31 ~~l~~L~l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIET--HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESC--CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCC--cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 48999999433 3556665 588999999999999944888887 588999999999998667888885 568999999
Q ss_pred EEEecCCC
Q 048347 319 KLESWWPR 326 (351)
Q Consensus 319 ~L~l~~~~ 326 (351)
+|+++++.
T Consensus 109 ~L~l~~n~ 116 (239)
T 2xwt_C 109 FLGIFNTG 116 (239)
T ss_dssp EEEEEEEC
T ss_pred EEeCCCCC
Confidence 99998764
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.08 E-value=5.7e-06 Score=76.98 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChhh---
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEEL--- 311 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~i--- 311 (351)
.+..+++|++|+|+.+ .+..++. .+..+++|++|+|++| .+..+ |..++.+++|+.|+|++| .+..+|..+
T Consensus 83 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 158 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSN--HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKD 158 (361)
T ss_dssp TTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC-
T ss_pred hccCCCCCCEEECCCC--cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcC
Confidence 3556666777777322 2334443 3566677777777776 45554 344666777777777763 566666655
Q ss_pred -hcCCCCCEEEecCC
Q 048347 312 -WRIKALRKLESWWP 325 (351)
Q Consensus 312 -~~L~~L~~L~l~~~ 325 (351)
.++++|+.|++++.
T Consensus 159 ~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 159 GNKLPKLMLLDLSSN 173 (361)
T ss_dssp ---CTTCCEEECCSS
T ss_pred cccCCcCCEEECCCC
Confidence 45677777777654
No 104
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.07 E-value=5.4e-06 Score=81.48 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=42.8
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccCh-hhhcCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPE-ELWRIK 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~ 315 (351)
+..+++|++|+++.+......+|..+..+++|++|++++| .+..+ |..++.+++|++|++++| .+..+|. .+.+++
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLT 518 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhccc
Confidence 3445555555552222221245555555566666666655 33333 445555666666666654 3333433 345566
Q ss_pred CCCEEEecC
Q 048347 316 ALRKLESWW 324 (351)
Q Consensus 316 ~L~~L~l~~ 324 (351)
+|+.|++++
T Consensus 519 ~L~~L~l~~ 527 (570)
T 2z63_A 519 SLQKIWLHT 527 (570)
T ss_dssp TCCEEECCS
T ss_pred CCcEEEecC
Confidence 666666655
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.07 E-value=7.2e-06 Score=76.29 Aligned_cols=82 Identities=18% Similarity=0.117 Sum_probs=50.2
Q ss_pred CCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCcccccc-ChhhhcCCC
Q 048347 240 KLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKF-PEELWRIKA 316 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~l-P~~i~~L~~ 316 (351)
.+++|++|+|+.+ .+..++ ..+..+++|++|+|++| .+..+|.. +..+++|++|+|++|. +..+ |..+.++++
T Consensus 62 ~l~~L~~L~L~~N--~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~ 137 (361)
T 2xot_A 62 RLTNLHSLLLSHN--HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQ 137 (361)
T ss_dssp CCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred cccccCEEECCCC--cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCccc
Confidence 5667777777322 233444 34666777777777776 46666553 5667777777777643 4444 455667777
Q ss_pred CCEEEecCC
Q 048347 317 LRKLESWWP 325 (351)
Q Consensus 317 L~~L~l~~~ 325 (351)
|++|++++.
T Consensus 138 L~~L~L~~N 146 (361)
T 2xot_A 138 LQKLYLSQN 146 (361)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 777777654
No 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.06 E-value=9e-06 Score=74.53 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChh-hhc
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEE-LWR 313 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~ 313 (351)
..+..+++|++|+++ ++. +..+ |..++.+++|++|++++| .+..+|..+. ++|++|++++| .+..+|.. +.+
T Consensus 72 ~~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~ 145 (332)
T 2ft3_A 72 DDFKGLQHLYALVLV-NNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSG 145 (332)
T ss_dssp TTTTTCTTCCEEECC-SSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSS
T ss_pred hHhhCCCCCcEEECC-CCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCC
Confidence 356778888888883 333 3344 666888888888888888 6778887665 78888888874 56667754 678
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|++++..
T Consensus 146 l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 146 LRNMNCIEMGGNP 158 (332)
T ss_dssp CSSCCEEECCSCC
T ss_pred CccCCEEECCCCc
Confidence 8889999888765
No 107
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.06 E-value=9.4e-06 Score=74.30 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=49.1
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccCh-hhhcCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPE-ELWRIK 315 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~ 315 (351)
.+..+++|++|+++ ++......|..+..+++|++|++++| .+..+|..+. ++|++|++++| .+..+|. .+++++
T Consensus 71 ~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 71 DFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLN 145 (330)
T ss_dssp TTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCT
T ss_pred hhccCCCCCEEECC-CCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCc
Confidence 45667777777773 32222223555667777777777776 4666665543 56666666654 3444443 345666
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|++++..
T Consensus 146 ~L~~L~l~~n~ 156 (330)
T 1xku_A 146 QMIVVELGTNP 156 (330)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECCCCc
Confidence 66666666543
No 108
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.05 E-value=8e-06 Score=78.31 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCCCCCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChh-hhc
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEE-LWR 313 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~-i~~ 313 (351)
.+..+++|++|+|+.+ .+..+|.. +..+++|++|+|++| .+..+|. .++.+++|++|++++|..+..+|.. +.+
T Consensus 118 ~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 118 AFNGLASLNTLELFDN--WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTCTTCCEEECCSS--CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hccCcccCCEEECCCC--cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 3455666666666322 22234332 555666666666666 4555554 3566666666666666666666653 566
Q ss_pred CCCCCEEEecCCC
Q 048347 314 IKALRKLESWWPR 326 (351)
Q Consensus 314 L~~L~~L~l~~~~ 326 (351)
+++|++|+++++.
T Consensus 195 l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 195 LFNLKYLNLGMCN 207 (452)
T ss_dssp CTTCCEEECTTSC
T ss_pred CCCCCEEECCCCc
Confidence 7777777776654
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.05 E-value=8.2e-06 Score=84.56 Aligned_cols=86 Identities=15% Similarity=0.079 Sum_probs=70.1
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChhhhcCCCCC
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALR 318 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~ 318 (351)
..++|++|+|+.+ ......|..+..+++|++|+|++|.....+ |..++++++|++|+|++|......|..++++++|+
T Consensus 22 lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 4579999999543 333334667999999999999999667788 66699999999999999654444588999999999
Q ss_pred EEEecCCC
Q 048347 319 KLESWWPR 326 (351)
Q Consensus 319 ~L~l~~~~ 326 (351)
+|+++++.
T Consensus 101 ~L~Ls~n~ 108 (844)
T 3j0a_A 101 ELRLYFCG 108 (844)
T ss_dssp CEECTTCC
T ss_pred EeeCcCCC
Confidence 99999875
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.05 E-value=7.2e-06 Score=75.46 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=39.7
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL 317 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 317 (351)
+..+++|++|+++.+ ....+| .+..+++|++|++++| .+..+|. ++.+++|++|++++|..+..+| .+.++++|
T Consensus 84 ~~~l~~L~~L~L~~n--~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN--KITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSS--CCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTC
T ss_pred hhcCCcCCEEEccCC--cccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCC
Confidence 445555666666222 222333 2455555555555555 3445543 5555555555555544333333 24444455
Q ss_pred CEEEecCC
Q 048347 318 RKLESWWP 325 (351)
Q Consensus 318 ~~L~l~~~ 325 (351)
++|+++++
T Consensus 158 ~~L~l~~~ 165 (347)
T 4fmz_A 158 NYLTVTES 165 (347)
T ss_dssp CEEECCSS
T ss_pred cEEEecCC
Confidence 55554443
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.04 E-value=2.2e-07 Score=78.97 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=42.5
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccCh--hhhcC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPE--ELWRI 314 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~--~i~~L 314 (351)
.+..+++|++|+++.+. +..+|..+..+++|++|++++| .+..+| .++.+++|++|++++| .+..+|. .+.++
T Consensus 65 ~~~~l~~L~~L~l~~n~--l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l 139 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNL--IKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAAL 139 (198)
T ss_dssp CHHHHTTCCEEEEEEEE--ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTT
T ss_pred ccccCCCCCEEECCCCC--cccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcC
Confidence 33444555555552221 1134433334455555555555 444554 4555555666666553 3444443 45566
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|++|++++.+
T Consensus 140 ~~L~~L~l~~N~ 151 (198)
T 1ds9_A 140 DKLEDLLLAGNP 151 (198)
T ss_dssp TTCSEEEECSCH
T ss_pred CCCCEEEecCCc
Confidence 666666666554
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.04 E-value=8.5e-06 Score=80.85 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCCCCCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChhhhcC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
.+..+++|++|+|+ ++ .+..+ |..+.++++|++|+|++| .+..+|. .++.+++|++|+|++|......|..+.++
T Consensus 489 ~~~~l~~L~~L~Ls-~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 489 IFTELRNLTFLDLS-QC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CCTTCTTCCEEECT-TS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred hhhhccccCEEECC-CC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 34556667777773 32 23333 444666777777777776 4665544 36667777777777654333334455665
Q ss_pred -CCCCEEEecC
Q 048347 315 -KALRKLESWW 324 (351)
Q Consensus 315 -~~L~~L~l~~ 324 (351)
++|+.|++++
T Consensus 566 ~~~L~~L~L~~ 576 (635)
T 4g8a_A 566 PSSLAFLNLTQ 576 (635)
T ss_dssp CTTCCEEECTT
T ss_pred hCcCCEEEeeC
Confidence 5677777765
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.03 E-value=6.8e-06 Score=81.93 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcC
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRI 314 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L 314 (351)
++.+..+++|+.|+|+.+. +..++ .+..+++|+.|+|++| .+..+ ..++.+++|+.|+|++| .+..+|. +.++
T Consensus 102 l~~l~~l~~L~~L~Ls~N~--l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l 174 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNG--ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGL 174 (605)
T ss_dssp CTTSTTCTTCCEEECTTSC--CCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTC
T ss_pred ChhhccCCCCCEEEecCCC--CCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccC
Confidence 3456667777777773222 22333 3566677777777776 46655 35667777777777764 3555544 6667
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|+.|+++++.
T Consensus 175 ~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 175 TKLQNLYLSKNH 186 (605)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECcCCC
Confidence 777777776654
No 114
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.03 E-value=4.5e-06 Score=75.97 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCceEEEEecccccCceeeeCC--CCCCcccEEEEecCCcccccccccccc-----CCccEEeecCCccccccC-hhhh
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCGH--GGFPRQEILHLKSMLWLEEWKMETGAM-----QKLKSLIVNPCAYLRKFP-EELW 312 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~~--~~l~~L~~L~L~~~~~l~~lp~~i~~L-----~~L~~L~l~~c~~l~~lP-~~i~ 312 (351)
+++|++|+++.+... ..+|..+ ..+++|++|++++| .+..+|..++.+ ++|++|++++|. +..+| ..++
T Consensus 94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 455555555322221 2344433 45555555555555 344445444444 555555555532 33333 4455
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|++++..
T Consensus 171 ~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 171 VFPALSTLDLSDNP 184 (312)
T ss_dssp CCSSCCEEECCSCT
T ss_pred cCCCCCEEECCCCC
Confidence 55555555555543
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=7.8e-06 Score=68.96 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=64.9
Q ss_pred CCceEEEEecccccCceeeeC--CCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChh-hhcCCCC
Q 048347 242 PHLKVLKLKRSSYSGRKLVCG--HGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEE-LWRIKAL 317 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~L 317 (351)
++|++|+++.+ .+..++.. ++.+++|++|+|++| .+..+ |..++.+++|++|+|++| .+..+|.. +.++++|
T Consensus 29 ~~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTC
T ss_pred CCCCEEECCCC--cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCC
Confidence 48999999433 34455543 789999999999999 57666 667999999999999995 56666654 7899999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|++++..
T Consensus 105 ~~L~L~~N~ 113 (192)
T 1w8a_A 105 KTLNLYDNQ 113 (192)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 999999864
No 116
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.01 E-value=8.5e-06 Score=80.86 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=41.5
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCcccccc--ChhhhcC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKF--PEELWRI 314 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~l--P~~i~~L 314 (351)
+..+++|++|+++ ++......|..++.+++|++|++++| .+..+ |..++.+++|++|++++|. +..+ |.. ..+
T Consensus 77 ~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 152 (606)
T 3t6q_A 77 FQSQHRLDTLVLT-ANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKG-FPT 152 (606)
T ss_dssp TTTCTTCCEEECT-TCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTT-CCC
T ss_pred ccCccccCeeeCC-CCcccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccc-cCC
Confidence 4455555555552 22222222444555555555555555 34444 3445556666666666532 3333 322 236
Q ss_pred CCCCEEEecCC
Q 048347 315 KALRKLESWWP 325 (351)
Q Consensus 315 ~~L~~L~l~~~ 325 (351)
++|++|++++.
T Consensus 153 ~~L~~L~L~~n 163 (606)
T 3t6q_A 153 EKLKVLDFQNN 163 (606)
T ss_dssp TTCCEEECCSS
T ss_pred cccCEEEcccC
Confidence 66666666554
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=1.5e-05 Score=66.06 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-hhcCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-LWRIKAL 317 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~L 317 (351)
.++|+.|+++.+. +..+|.. +..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|.. ++++++|
T Consensus 27 ~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCccc
Confidence 4789999994333 3355543 688999999999999 68888876 689999999999985 67788876 5899999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|++++..
T Consensus 103 ~~L~l~~N~ 111 (177)
T 2o6r_A 103 KELALDTNQ 111 (177)
T ss_dssp CEEECCSSC
T ss_pred CEEECcCCc
Confidence 999998754
No 118
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.98 E-value=7.5e-06 Score=74.35 Aligned_cols=119 Identities=8% Similarity=-0.028 Sum_probs=69.5
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~ 96 (351)
.+++|+++..+.+.+++..+. ...+.++|+.|+|||++|+.+++. +........++.+. .+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~------------- 79 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDE------------- 79 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTST-------------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccc-------------
Confidence 458999999999999886643 223789999999999999999876 31111011122222 110
Q ss_pred CCCCccCCCCCHHHHHHHHHHh--c-CCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 97 LSALSEILDNDFEMKKNTLHNY--L-KNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~--L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
. ............... + .+++.++|+|+++.. +..+.+...+.....+.++|+ |...
T Consensus 80 --~----~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 80 --R----GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp --T----CTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred --c----ChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 0 001111112222111 2 256789999999754 445666666665555666666 6543
No 119
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.98 E-value=1.3e-05 Score=64.40 Aligned_cols=46 Identities=9% Similarity=-0.120 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++|+++..+++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888543222234569999999999999999987
No 120
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.97 E-value=1.6e-05 Score=73.51 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=68.0
Q ss_pred CCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCccccccChh-hhcCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRKFPEE-LWRIKAL 317 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~L 317 (351)
.++|++|+++ ++ .+..+|. .+..+++|++|++++| .+..++ ..++.+++|++|++++| .+..+|.. ++++++|
T Consensus 51 ~~~L~~L~l~-~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLS-NN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECT-TS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTC
T ss_pred cccCcEEECC-CC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccC
Confidence 3689999993 33 3456665 6889999999999999 677765 45999999999999985 68888887 7899999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|++++..
T Consensus 127 ~~L~L~~n~ 135 (353)
T 2z80_A 127 TFLNLLGNP 135 (353)
T ss_dssp SEEECTTCC
T ss_pred CEEECCCCC
Confidence 999999865
No 121
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.96 E-value=1.8e-05 Score=78.43 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChh-hhcC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEE-LWRI 314 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L 314 (351)
.+..+++|++|+++ ++ .+..+|..+..+++|++|++++| .+..+ |..++.+++|++|++++|.....+|.+ ++++
T Consensus 273 ~~~~l~~L~~L~l~-~n-~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLT-AT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTCTTCSEEECT-TS-CCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HhccccCCCEEecc-CC-ccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 35667778888873 22 34467777777777777777777 35444 445666777777777765444455543 5566
Q ss_pred CCCCEEEecCC
Q 048347 315 KALRKLESWWP 325 (351)
Q Consensus 315 ~~L~~L~l~~~ 325 (351)
++|++|+++++
T Consensus 350 ~~L~~L~l~~n 360 (606)
T 3t6q_A 350 ENLRELDLSHD 360 (606)
T ss_dssp TTCCEEECCSS
T ss_pred CcCCEEECCCC
Confidence 66666666554
No 122
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.96 E-value=1.1e-05 Score=73.86 Aligned_cols=82 Identities=18% Similarity=0.102 Sum_probs=58.5
Q ss_pred CCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChhhhcCCCCCEE
Q 048347 242 PHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKL 320 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L 320 (351)
++|++|+++ ++......|..+..+++|++|++++| .+..+|. .++.+++|++|++++| .+..+|.++.++++|++|
T Consensus 192 ~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 192 PSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV 268 (330)
T ss_dssp TTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred ccCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEE
Confidence 567777773 33222222456778888888888888 5666554 5778888888888885 577888888888888888
Q ss_pred EecCCC
Q 048347 321 ESWWPR 326 (351)
Q Consensus 321 ~l~~~~ 326 (351)
++++.+
T Consensus 269 ~l~~N~ 274 (330)
T 1xku_A 269 YLHNNN 274 (330)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 887754
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.95 E-value=3e-07 Score=78.09 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.+..+++|++|+++.+. +..+| .+..+++|++|++++| .+..+|..++.+++|++|++++| .+..+| .++++++
T Consensus 43 ~~~~l~~L~~L~ls~n~--l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN--IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEE--ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCC--Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence 45678999999994433 33477 7788899999999999 68899988888999999999985 677888 7899999
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|++|++++..
T Consensus 117 L~~L~l~~N~ 126 (198)
T 1ds9_A 117 LRVLYMSNNK 126 (198)
T ss_dssp SSEEEESEEE
T ss_pred CCEEECCCCc
Confidence 9999998864
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.94 E-value=1.4e-05 Score=66.30 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=61.8
Q ss_pred ceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChhh-hcCCCCCEEE
Q 048347 244 LKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEEL-WRIKALRKLE 321 (351)
Q Consensus 244 L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~i-~~L~~L~~L~ 321 (351)
-+.++++ ...+..+|..+. ++|++|+|++| .+..+ |..++.+++|++|+|++| .+..+|.++ .++++|++|+
T Consensus 14 ~~~l~~~--~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQ--NIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECC--SSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeC--CCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEE
Confidence 3677883 334457787553 89999999999 67777 556899999999999995 788999875 7999999999
Q ss_pred ecCCC
Q 048347 322 SWWPR 326 (351)
Q Consensus 322 l~~~~ 326 (351)
+++..
T Consensus 88 L~~N~ 92 (174)
T 2r9u_A 88 LNDNH 92 (174)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 98754
No 125
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.93 E-value=1.5e-05 Score=78.05 Aligned_cols=82 Identities=15% Similarity=0.072 Sum_probs=67.0
Q ss_pred CCCceEEEEecccccCcee-eeCCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCccccccChh-hhcCCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKL-VCGHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRKFPEE-LWRIKAL 317 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~L 317 (351)
.++|++|+++ ++. +..+ |..+..+++|++|++++| .+..+| ..++.+++|++|++++| .+..+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls-~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLS-FNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECC-SSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTC
T ss_pred CCCccEEECc-CCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCC
Confidence 3789999994 333 3344 567899999999999999 577665 56999999999999996 56667765 9999999
Q ss_pred CEEEecCCC
Q 048347 318 RKLESWWPR 326 (351)
Q Consensus 318 ~~L~l~~~~ 326 (351)
++|+++++.
T Consensus 101 ~~L~Ls~n~ 109 (549)
T 2z81_A 101 KYLNLMGNP 109 (549)
T ss_dssp CEEECTTCC
T ss_pred cEEECCCCc
Confidence 999999875
No 126
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.92 E-value=5.9e-06 Score=75.37 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=66.3
Q ss_pred CCCCCCCceEEEEecccccCceeeeCC-CCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGH-GGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
.+..+++|++|+++ ++......+..+ ..+++|++|++++| .+..+|. ...+++|++|++++| .+..+|.++.+++
T Consensus 139 ~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~ 214 (317)
T 3o53_A 139 DEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (317)
T ss_dssp CTGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred hhhccCCCCEEECC-CCCCCcccHHHHhhccCcCCEEECCCC-cCccccc-ccccccCCEEECCCC-cCCcchhhhcccC
Confidence 45668899999994 333222223333 46889999999999 6888874 446899999999985 6888999999999
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|+.|++++..
T Consensus 215 ~L~~L~L~~N~ 225 (317)
T 3o53_A 215 GVTWISLRNNK 225 (317)
T ss_dssp TCSEEECTTSC
T ss_pred cccEEECcCCc
Confidence 99999999875
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.92 E-value=1.5e-05 Score=77.35 Aligned_cols=82 Identities=15% Similarity=0.003 Sum_probs=64.7
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCE
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRK 319 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 319 (351)
.+++|++|+|+.+. +..+|. ...+++|++|+|++| .+..+|..++.+++|+.|+|++| .+..+|..++.+++|+.
T Consensus 167 ~l~~L~~L~Ls~N~--l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 167 SSDTLEHLNLQYNF--IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEH 241 (487)
T ss_dssp GTTTCCEEECTTSC--CCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCE
T ss_pred hCCcccEEecCCCc--cccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCE
Confidence 57888888884332 334443 446888999999998 68888888889999999999985 57789988889999999
Q ss_pred EEecCCC
Q 048347 320 LESWWPR 326 (351)
Q Consensus 320 L~l~~~~ 326 (351)
|++++.+
T Consensus 242 L~l~~N~ 248 (487)
T 3oja_A 242 FDLRGNG 248 (487)
T ss_dssp EECTTCC
T ss_pred EEcCCCC
Confidence 9998865
No 128
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.91 E-value=5.3e-06 Score=83.56 Aligned_cols=86 Identities=21% Similarity=0.106 Sum_probs=64.5
Q ss_pred CCCCCCceEEEEecccccCceeee-CCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCccccccChhhhcCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVC-GHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
+..+++|++|+++.+ .+..+|. .++.+++|++|++++| .+..+| ..++.+++|++|++++|......|..+++++
T Consensus 69 ~~~l~~L~~L~L~~n--~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHN--ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp HHHCTTCCEEECCSS--CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred HhcccCcCEEECCCC--ccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence 456788888888433 3445665 4788889999999988 567776 4588899999999998755455566778899
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|++++..
T Consensus 146 ~L~~L~L~~n~ 156 (680)
T 1ziw_A 146 NLQELLLSNNK 156 (680)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEEccCCc
Confidence 99999988753
No 129
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.88 E-value=1.1e-05 Score=81.20 Aligned_cols=87 Identities=17% Similarity=0.028 Sum_probs=63.6
Q ss_pred CCCCCCCceEEEEecccccCceee-eCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChh-hh--
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLV-CGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEE-LW-- 312 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~-i~-- 312 (351)
.+..+++|++|+++ ++. ...+| ..++.+++|++|++++|......|..++.+++|++|++++| .+..+|.. ++
T Consensus 92 ~~~~l~~L~~L~L~-~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 92 TFAFCTNLTELHLM-SNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIF 168 (680)
T ss_dssp TTTTCTTCSEEECC-SSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGG
T ss_pred hhccCCCCCEEECC-CCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhcc
Confidence 47788999999994 333 33454 56888999999999998433344556889999999999985 45666543 33
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|+++++.
T Consensus 169 ~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 169 ANSSLKKLELSSNQ 182 (680)
T ss_dssp TTCEESEEECTTCC
T ss_pred ccccccEEECCCCc
Confidence 56889999998763
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.88 E-value=1.1e-05 Score=78.22 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=66.4
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCC-CCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHG-GFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
.++.+++|++|+++ ++......|..+. .+++|++|+|++| .+..+|. ...+++|++|+|++| .+..+|.++++++
T Consensus 139 ~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~ 214 (487)
T 3oja_A 139 DEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (487)
T ss_dssp CGGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred hhcCCCCCCEEECC-CCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCC
Confidence 45678899999994 3333333455554 6889999999998 5777764 446899999999985 6888988899999
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|+.|++++..
T Consensus 215 ~L~~L~Ls~N~ 225 (487)
T 3oja_A 215 GVTWISLRNNK 225 (487)
T ss_dssp TCSEEECTTSC
T ss_pred CccEEEecCCc
Confidence 99999998865
No 131
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.87 E-value=2.5e-05 Score=76.06 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=61.5
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChh-hhcCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEE-LWRIKA 316 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~ 316 (351)
+..+++|+.|+++ ++......|..+. ++|++|++++| .+..+|..+..+++|++|++++| .+..+|.. +.++++
T Consensus 395 ~~~l~~L~~L~Ls-~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 395 CSWTKSLLSLNMS-SNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp CCCCTTCCEEECC-SSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hccCccCCEEECc-CCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 4566778888884 3332233443322 67888888888 67788888888889999999885 57788887 788888
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|++|++++.+
T Consensus 470 L~~L~l~~N~ 479 (520)
T 2z7x_B 470 LQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCC
Confidence 9999988754
No 132
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.86 E-value=2.2e-05 Score=75.53 Aligned_cols=79 Identities=20% Similarity=0.067 Sum_probs=41.3
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKA 316 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~ 316 (351)
.++.+++|++|+++.+. +..+| ++.+++|++|++++| .+..+| ++.+++|++|++++| .+..+| ++++++
T Consensus 59 ~l~~l~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNN--ITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSC--CSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTT
T ss_pred hhcccCCCCEEEccCCc--CCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCc
Confidence 45556666666663222 22233 455566666666665 355443 555556666666553 344444 455555
Q ss_pred CCEEEecCC
Q 048347 317 LRKLESWWP 325 (351)
Q Consensus 317 L~~L~l~~~ 325 (351)
|++|+++++
T Consensus 129 L~~L~l~~N 137 (457)
T 3bz5_A 129 LTYLNCARN 137 (457)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 555555543
No 133
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.85 E-value=2.8e-05 Score=74.84 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccCh-hhhcC
Q 048347 237 APEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPE-ELWRI 314 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L 314 (351)
.+..+++|++|+++ ++......|..+..+++|++|++++| .+..+ |..++.+++|+.|++++| .+..+|. .+.++
T Consensus 99 ~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l 175 (477)
T 2id5_A 99 VFTGLSNLTKLDIS-ENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHL 175 (477)
T ss_dssp SSTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTC
T ss_pred cccCCCCCCEEECC-CCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC-cCcccChhHhccc
Confidence 35677888888883 33333233555777788888888887 45544 445777888888888875 4666664 46778
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|+.|++++..
T Consensus 176 ~~L~~L~l~~n~ 187 (477)
T 2id5_A 176 HGLIVLRLRHLN 187 (477)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCcEEeCCCCc
Confidence 888888887654
No 134
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.84 E-value=3.6e-05 Score=73.46 Aligned_cols=89 Identities=13% Similarity=0.133 Sum_probs=61.8
Q ss_pred CCCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCccccccChh-hh
Q 048347 235 MPAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRKFPEE-LW 312 (351)
Q Consensus 235 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lP~~-i~ 312 (351)
++.+..+++|+.|+++ ++......|..+..+++|++|++++| .+..++ ..++.+++|+.|+|++| .+..+|.. +.
T Consensus 200 ~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 276 (440)
T 3zyj_A 200 IPNLTPLIKLDELDLS-GNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFT 276 (440)
T ss_dssp CCCCTTCSSCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTS
T ss_pred ccccCCCcccCEEECC-CCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhc
Confidence 3456677788888883 33222223556778888888888888 466554 34778888888888885 56677765 46
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|+.|++++.+
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 78888888887744
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.83 E-value=2.9e-05 Score=64.13 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=62.4
Q ss_pred CceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccChhh-hcCCCCCEE
Q 048347 243 HLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFPEEL-WRIKALRKL 320 (351)
Q Consensus 243 ~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP~~i-~~L~~L~~L 320 (351)
..+.++++ ...+..+|..+ .++|++|+|++| .+..+ |..++.+++|++|+|++| .+..+|.++ .++++|++|
T Consensus 10 ~~~~l~~s--~n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCS--GKSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECT--TSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeC--CCCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEE
Confidence 35678883 33455677654 488999999999 68777 556899999999999985 688898875 799999999
Q ss_pred EecCCC
Q 048347 321 ESWWPR 326 (351)
Q Consensus 321 ~l~~~~ 326 (351)
++++..
T Consensus 84 ~L~~N~ 89 (170)
T 3g39_A 84 SLNDNQ 89 (170)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 998754
No 136
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.83 E-value=3.1e-05 Score=76.31 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=59.7
Q ss_pred CCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChh-hhcCCC
Q 048347 238 PEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEE-LWRIKA 316 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~ 316 (351)
+..+++|++|+++.+.. ....|..+. ++|++|++++| .+..+|..++.+++|++|++++| .+..+|.+ +.++++
T Consensus 424 ~~~l~~L~~L~l~~n~l-~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 424 CAWAESILVLNLSSNML-TGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCCTTCCEEECCSSCC-CGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred hcCcccCCEEECCCCCC-Ccchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence 45566677777733322 223333222 57888888888 68888888888888999999885 57788887 788888
Q ss_pred CCEEEecCCC
Q 048347 317 LRKLESWWPR 326 (351)
Q Consensus 317 L~~L~l~~~~ 326 (351)
|+.|++++.+
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 9999888754
No 137
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=2.5e-05 Score=69.93 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=40.1
Q ss_pred CCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.-++++|.++.++++.+.+... -...+-+.|+|+.|+|||+||+.+++.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344567999999999998887431 123345779999999999999999887
No 138
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.82 E-value=1.2e-05 Score=73.73 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=26.9
Q ss_pred CCCCCcccEEEEecCCccccccc-cccccCCccEEeecCCccccccChhhhcCCCCCEEEecC
Q 048347 263 HGGFPRQEILHLKSMLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWW 324 (351)
Q Consensus 263 ~~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 324 (351)
+..+++|++|++++| .+..+|. .++.+++|+.|++++| .+..+|.+++++++|++|++++
T Consensus 213 l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCC
Confidence 444444444444444 2333332 3444444444444442 3444444444444444444443
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.82 E-value=4e-05 Score=69.38 Aligned_cols=46 Identities=7% Similarity=-0.027 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHHcc-------------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIER-------------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++|.++.++.+.+++..- .....-+.|+|+.|+|||++|+.+++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999988776421 233446779999999999999988776
No 140
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.81 E-value=2.1e-05 Score=75.60 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCE
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRK 319 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~ 319 (351)
.+++++.|.++ ......+|. +..+++|++|++++| .+..+|. ++.+++|++|++++| .+..+|. ++++++|++
T Consensus 44 ~l~~l~~L~l~--~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQAD--RLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECC--SSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecC--CCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCE
Confidence 46789999993 334445663 778999999999999 6888886 999999999999986 5777776 999999999
Q ss_pred EEecCCC
Q 048347 320 LESWWPR 326 (351)
Q Consensus 320 L~l~~~~ 326 (351)
|+++++.
T Consensus 117 L~L~~n~ 123 (466)
T 1o6v_A 117 LTLFNNQ 123 (466)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 9999875
No 141
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.80 E-value=8e-06 Score=74.21 Aligned_cols=89 Identities=24% Similarity=0.189 Sum_probs=51.4
Q ss_pred CCCCCCCCceEEEEecccccC-ceeee--CCCCCCcccEEEEecCCcccccccc----ccccCCccEEeecCCcccccc-
Q 048347 236 PAPEKLPHLKVLKLKRSSYSG-RKLVC--GHGGFPRQEILHLKSMLWLEEWKME----TGAMQKLKSLIVNPCAYLRKF- 307 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~-~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~c~~l~~l- 307 (351)
..+..+++|++|+++.+.... ..++. ....+++|++|++++| .+..+|.. ++.+++|++|+|++|. +..+
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~ 240 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATV 240 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccc
Confidence 455677788888884433221 01222 2356677777777777 45555442 3566777777777654 3333
Q ss_pred ChhhhcC---CCCCEEEecCCC
Q 048347 308 PEELWRI---KALRKLESWWPR 326 (351)
Q Consensus 308 P~~i~~L---~~L~~L~l~~~~ 326 (351)
|..++.+ ++|++|++++..
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSC
T ss_pred hhhHHhccCcCcCCEEECCCCC
Confidence 6666655 477777776543
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=3.3e-05 Score=64.23 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHccC-CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCcc
Q 048347 24 EDKMEELLDLLIERQ-PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSE 102 (351)
Q Consensus 24 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (351)
.+..+.+.+++..-. ++-..+.|+|+.|+||||||+.+++.......+. +.++ +..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~----~~~~~~~~~~~~~~~~~~--- 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF----DTKDLIFRLKHLMDEGKD--- 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE----EHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE----EHHHHHHHHHHHhcCchH---
Confidence 334444444443321 2346889999999999999999988732122222 2333 344555555443322211
Q ss_pred CCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 103 ILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
. ...+.+. +.-++||||+..
T Consensus 92 ----~--~~~~~~~-----~~~llilDE~~~ 111 (180)
T 3ec2_A 92 ----T--KFLKTVL-----NSPVLVLDDLGS 111 (180)
T ss_dssp ----S--HHHHHHH-----TCSEEEEETCSS
T ss_pred ----H--HHHHHhc-----CCCEEEEeCCCC
Confidence 1 2222222 445889999973
No 143
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.77 E-value=5.5e-05 Score=69.06 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=68.7
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLM 95 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~ 95 (351)
-++++|.++.++.+.+++..+. ...++-+.|+.|+|||++|+.+.+. ... ..+.++.+ .... ..+.++..+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~~~~-~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDCKID-FVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTCCHH-HHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccccCHH-HHHHHHHHHH
Confidence 3679999999999999998653 2356667788999999999999877 321 12222222 2221 1121111111
Q ss_pred CCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCChh---hHHHHHhhcCCCCCCcEEEE-Eee
Q 048347 96 PLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRGD---IWDFLKEALPDHQNGSRILT-ALI 158 (351)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~~~l~~~l~~~~~gs~Iiv-TR~ 158 (351)
... ...+++.++++|++.... ..+.+...+.....+.++|. |..
T Consensus 98 ~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 98 SAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp HBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred hhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 100 012477899999998653 45555555443333456666 543
No 144
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=7.2e-05 Score=63.33 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=53.9
Q ss_pred Cccccchh----hHHHHHHHHHccCCC--eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 18 KVDLDLED----KMEELLDLLIERQPQ--LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 18 ~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
+++++.+. ..+.+.+++...... ...+.|+|++|+|||+||+.+++. .......+++++. .++...+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~----~~~~~~~~ 98 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV----PELFRELK 98 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH----HHHHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh----HHHHHHHH
Confidence 44665443 344455555543221 157789999999999999999987 4444444555543 34444444
Q ss_pred HHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 92 KSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
..... .......+.+. +. -+|||||++.
T Consensus 99 ~~~~~---------~~~~~~~~~~~----~~-~~lilDei~~ 126 (202)
T 2w58_A 99 HSLQD---------QTMNEKLDYIK----KV-PVLMLDDLGA 126 (202)
T ss_dssp HC------------CCCHHHHHHHH----HS-SEEEEEEECC
T ss_pred HHhcc---------chHHHHHHHhc----CC-CEEEEcCCCC
Confidence 32211 11223333333 22 3899999954
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.71 E-value=9e-05 Score=65.24 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=37.0
Q ss_pred CCCccccchhhHHHHHHHHHc---cC-------CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIE---RQ-------PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.=++++|.++.++.+.+++.. .. ...+-+.++|+.|+|||++|+.+++.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346789999988888776532 11 22345679999999999999999886
No 146
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.68 E-value=3.7e-05 Score=73.92 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=68.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCC
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIK 315 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~ 315 (351)
..++.+++|++|+++.+ .+..+| .++.+++|++|++++| .+..+| ++.+++|++|++++| .+..+| +++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n--~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS--SITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSS--CCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred cChhHcCCCCEEEccCC--CcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence 34567899999999443 333456 6889999999999999 688887 899999999999996 577776 88999
Q ss_pred CCCEEEecCCC
Q 048347 316 ALRKLESWWPR 326 (351)
Q Consensus 316 ~L~~L~l~~~~ 326 (351)
+|++|+++++.
T Consensus 107 ~L~~L~L~~N~ 117 (457)
T 3bz5_A 107 KLTYLNCDTNK 117 (457)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 99999999875
No 147
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.68 E-value=0.0001 Score=73.60 Aligned_cols=76 Identities=20% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEE
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKL 320 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L 320 (351)
+++|+.|+++.+ .+..+| ..+++|++|++++| .+..+|. .+++|++|+|++| .+..+|.+++++++|+.|
T Consensus 220 ~~~L~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 220 PSGLKELIVSGN--RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTV 289 (622)
T ss_dssp CTTCCEEECCSS--CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEE
T ss_pred CCCCCEEEccCC--ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEE
Confidence 478888998433 333466 56788999999999 6888987 6789999999996 678999999999999999
Q ss_pred EecCCC
Q 048347 321 ESWWPR 326 (351)
Q Consensus 321 ~l~~~~ 326 (351)
++++.+
T Consensus 290 ~L~~N~ 295 (622)
T 3g06_A 290 NLEGNP 295 (622)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 999876
No 148
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.68 E-value=6.4e-05 Score=68.16 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCCCCceEEEEecccccCceee----eCCCCCCcccEEEEecCCcccccc-ccccccCCccEEeecCCccccc--cChh-
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLV----CGHGGFPRQEILHLKSMLWLEEWK-METGAMQKLKSLIVNPCAYLRK--FPEE- 310 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp----~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~--lP~~- 310 (351)
..+++|++|+++.+.... ..+ ..+..+++|++|++++| .+..+| ..++.+++|++|+|++|..... +|..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 789999999996554332 222 23457899999999999 566655 5689999999999999753321 4333
Q ss_pred -hhcCCCCCEEEecCCC
Q 048347 311 -LWRIKALRKLESWWPR 326 (351)
Q Consensus 311 -i~~L~~L~~L~l~~~~ 326 (351)
++++++|++|+++++.
T Consensus 192 ~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTG 208 (310)
T ss_dssp CTTSSCCCCSCBCCSSC
T ss_pred hhhcCCCCCEEECCCCC
Confidence 3789999999999875
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=3.7e-05 Score=70.87 Aligned_cols=46 Identities=11% Similarity=-0.031 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+++.++.+..++..+... -+.++|+.|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998765322 2789999999999999999887
No 150
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.64 E-value=0.00034 Score=64.82 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=36.1
Q ss_pred CCccccchhhHHHH---HHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEEL---LDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|++..++.+ ...+..+....+.+-|+|+.|+|||++|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999887774 4444443322357779999999999999999987
No 151
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.64 E-value=3e-05 Score=64.16 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|+++.++.+.+.+.... ..-+.|+|+.|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999987643 345679999999999999999876
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.63 E-value=6.6e-05 Score=69.09 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred EEEEecccccCceeeeCCCCCCcccEEEEec-CCccccccc-cccccCCccEEeecCCccccccCh-hhhcCCCCCEEEe
Q 048347 246 VLKLKRSSYSGRKLVCGHGGFPRQEILHLKS-MLWLEEWKM-ETGAMQKLKSLIVNPCAYLRKFPE-ELWRIKALRKLES 322 (351)
Q Consensus 246 ~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~-~~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~L~~L~l 322 (351)
.++++ +...+..+|. +..+.+|++|+|++ | .+..+|. .++.|.+|+.|+|++| .+..+|. .+++|++|+.|+|
T Consensus 12 ~v~~~-~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCT-RDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECC-SSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcC-CCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeC
Confidence 34662 2214567888 99999999999997 7 7888885 5999999999999996 5776765 5699999999999
Q ss_pred cCCC
Q 048347 323 WWPR 326 (351)
Q Consensus 323 ~~~~ 326 (351)
++..
T Consensus 88 ~~N~ 91 (347)
T 2ifg_A 88 SFNA 91 (347)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 8754
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=4.7e-05 Score=63.21 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=59.3
Q ss_pred CCceEEEEecccccCc-eeeeCCCCCCcccEEEEecCCccccccc-ccccc----CCccEEeecCCcccccc-ChhhhcC
Q 048347 242 PHLKVLKLKRSSYSGR-KLVCGHGGFPRQEILHLKSMLWLEEWKM-ETGAM----QKLKSLIVNPCAYLRKF-PEELWRI 314 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~L----~~L~~L~l~~c~~l~~l-P~~i~~L 314 (351)
.+|+.|+++ ++.-.. .+ ..+.++++|+.|+|++|..+++--. .++.+ ++|++|+|++|+.+..- -..+.++
T Consensus 61 ~~L~~LDLs-~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDAT-DSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEE-SCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCc-CCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 369999995 443221 22 2367899999999999977764322 24444 47999999999877531 1245688
Q ss_pred CCCCEEEecCCC
Q 048347 315 KALRKLESWWPR 326 (351)
Q Consensus 315 ~~L~~L~l~~~~ 326 (351)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999997
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00015 Score=66.91 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHH-HccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLL-IERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.++..+.+.+++ ..+. ... +.|+|+.|+||||+|+.+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998888 4432 223 889999999999999988663
No 155
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.59 E-value=7.9e-05 Score=71.27 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=57.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLK 120 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 120 (351)
..-+.|+|+.|+||||||+.+++. ....+...-+++++ ..++..++...+... . ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~--~~~~~~~~~~~~~~~---------~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT--SEKFLNDLVDSMKEG---------K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEE--HHHHHHHHHHHHHTT---------C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee--HHHHHHHHHHHHHcc---------c----HHHHHHHhc
Confidence 556889999999999999999987 54444332233333 223344444333221 1 122334444
Q ss_pred CceEEEEEeCCCChh----hHHHHHhhcCC-CCCCcEEEE-Eee
Q 048347 121 NKRYLIVIQDVWRGD----IWDFLKEALPD-HQNGSRILT-ALI 158 (351)
Q Consensus 121 ~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gs~Iiv-TR~ 158 (351)
.+.-+++|||+.... ..+.+...+.. ...|..||+ |.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356789999996442 23344443321 234667777 664
No 156
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.58 E-value=0.0002 Score=65.42 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=39.7
Q ss_pred cCCCCCccccchhhHHHHHHHHHc----------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIE----------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.+.=++++|.++.++.+.+.+.. .....+-+-++|+.|+|||+||+.+++.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 334446789999999999988831 1122345779999999999999999887
No 157
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.58 E-value=9.6e-05 Score=73.00 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=60.2
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCc-------cEEeecCCccccccChhhh
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKL-------KSLIVNPCAYLRKFPEELW 312 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L-------~~L~l~~c~~l~~lP~~i~ 312 (351)
.+++|++|+++.|. +..+|. +. ++|++|+|++| .+..+|. ++. +| +.|+|++| .+..+|.++.
T Consensus 158 ~l~~L~~L~Ls~N~--L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~ 227 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQ--LTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENIL 227 (571)
T ss_dssp CCTTCCEEECCSSC--CSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGG
T ss_pred cCCCcCEEECCCCC--CCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHh
Confidence 46788888884332 334666 44 88999999999 6889997 655 77 99999985 6889999999
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|+.|++++.+
T Consensus 228 ~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 228 SLDPTCTIILEDNP 241 (571)
T ss_dssp GSCTTEEEECCSSS
T ss_pred cCCCCCEEEeeCCc
Confidence 99999999999876
No 158
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.57 E-value=0.00017 Score=69.22 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=24.0
Q ss_pred CCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCCCEEEecC
Q 048347 263 HGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKALRKLESWW 324 (351)
Q Consensus 263 ~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L~~L~l~~ 324 (351)
++.+++|++|++++| .+..+|..+ .+|++|++++| .+..+| +++++++|++|++++
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 444444555554444 343444322 24444444442 233344 344444444444443
No 159
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.00082 Score=61.38 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=60.1
Q ss_pred CCCCCccccchhhHHHHHHHHHcc----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIER----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LS 82 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~ 82 (351)
.+.=++++|.++.++.|.+.+... ....+-+-++|+.|+|||+||+.+++. .. ..-++.++ .+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~----~~~~~~i~~~~ 81 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD 81 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TT----SCEEEEEECCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cC----CCcEEEEEhHH
Confidence 344467899999999998877421 112356779999999999999999987 31 12344444 11
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh
Q 048347 83 LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG 134 (351)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~ 134 (351)
. .... .......+...+...-..+..+|+||+++..
T Consensus 82 l-----------~~~~-----~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 82 L-----------VSKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp S-----------CCSS-----CCSCHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred H-----------Hhhh-----hhHHHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 1 0110 1112333333333333467889999999754
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.54 E-value=3.2e-05 Score=70.53 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|+++..+.+..++..- ......+.|+|+.|+|||++|+.+++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999988887531 122356778999999999999999886
No 161
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.53 E-value=1.8e-05 Score=74.08 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=64.0
Q ss_pred CCCCCCCceEEEEeccccc---CceeeeCCCCCCcccEEEEecCCcccc-----ccccc--cccCCccEEeecCCccccc
Q 048347 237 APEKLPHLKVLKLKRSSYS---GRKLVCGHGGFPRQEILHLKSMLWLEE-----WKMET--GAMQKLKSLIVNPCAYLRK 306 (351)
Q Consensus 237 ~l~~l~~L~~L~l~~~~~~---~~~lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~i--~~L~~L~~L~l~~c~~l~~ 306 (351)
.+..+++|++|+|+.+... ...+|..+..+++|++|+|++|. +.. +|..+ +.+++|++|+|++|. +..
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH
Confidence 5667888999999433321 14567677788889999999884 543 45555 458889999998864 554
Q ss_pred -----cChhh-hcCCCCCEEEecCCC
Q 048347 307 -----FPEEL-WRIKALRKLESWWPR 326 (351)
Q Consensus 307 -----lP~~i-~~L~~L~~L~l~~~~ 326 (351)
+|..+ .++++|++|++++++
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCc
Confidence 88888 678999999988754
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.51 E-value=0.00013 Score=69.96 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=38.4
Q ss_pred CCCccccchhhH---HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKM---EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-++++|.+..+ ..+...+..+. ...+.++|+.|+||||+|+.+++.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 346689998888 67777776653 467789999999999999999987
No 163
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.49 E-value=9.2e-05 Score=71.09 Aligned_cols=88 Identities=23% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccc--ccChhhhcC-----
Q 048347 242 PHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLR--KFPEELWRI----- 314 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~--~lP~~i~~L----- 314 (351)
++|++|+++.+. ...+|. .+++|++|++++| .+..+|. .+++|++|++++|.... .+|.++++|
T Consensus 317 ~~L~~L~Ls~N~--l~~lp~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 317 PSLEELNVSNNK--LIELPA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp TTCCEEECCSSC--CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred CcCCEEECCCCc--cccccc---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 367777773322 223443 3577888888888 5777886 47888899998865444 677888887
Q ss_pred --------CCCCEEEecCCCh----hHHhhcccccc
Q 048347 315 --------KALRKLESWWPRP----ELRQSLHKFEE 338 (351)
Q Consensus 315 --------~~L~~L~l~~~~~----~~~~~l~~~~~ 338 (351)
++|+.|++++.+- .+...+..+..
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~ 423 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRM 423 (454)
T ss_dssp ------------------------------------
T ss_pred ccccccccCcCCEEECCCCcCCccccchhhHhheeC
Confidence 7888888887542 34444444443
No 164
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.48 E-value=0.00014 Score=67.18 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=25.1
Q ss_pred ccEEEEecCCccccccccccccCCccEEeecCCccccccChhh-hcCCCCCEEEecC
Q 048347 269 QEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEEL-WRIKALRKLESWW 324 (351)
Q Consensus 269 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i-~~L~~L~~L~l~~ 324 (351)
+++|++++| .++.+|.......+|+.|++.++..+..+|.++ .++++|+.|++++
T Consensus 156 l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 156 SVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp CEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 444444444 344444444444444444444444444444432 4444444444444
No 165
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.46 E-value=0.00037 Score=63.06 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=60.9
Q ss_pred CCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLS 82 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 82 (351)
.+.-++++|.++.++++.+++... -...+.+.++|+.|+|||+||+.+++. ... -++.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~-- 81 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK-- 81 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE--
Confidence 334456999999999988877531 123456789999999999999999987 322 233333
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 83 LDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
..++..... +.. ...+...+.........++++|++..
T Consensus 82 ~~~l~~~~~---g~~----------~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 82 GPELLTMWF---GES----------EANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHHHH---TTC----------TTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred hHHHHhhhc---Cch----------HHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 333332221 111 11233334444445678999999964
No 166
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.46 E-value=5.4e-05 Score=70.80 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=46.3
Q ss_pred CCCCCceEEEEecccccCc---eeeeCCCCCCcccEEEEecCCcccc-----cccccccc---------CCccEEeecCC
Q 048347 239 EKLPHLKVLKLKRSSYSGR---KLVCGHGGFPRQEILHLKSMLWLEE-----WKMETGAM---------QKLKSLIVNPC 301 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~---~lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L---------~~L~~L~l~~c 301 (351)
..+++|++|+|+.+..... .+|..+..+++|++|+|++|. ++. ++..+..+ ++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4556666666633322211 244455566667777776663 332 22223333 66777777665
Q ss_pred ccc-cccC---hhhhcCCCCCEEEecCCC
Q 048347 302 AYL-RKFP---EELWRIKALRKLESWWPR 326 (351)
Q Consensus 302 ~~l-~~lP---~~i~~L~~L~~L~l~~~~ 326 (351)
..- ..+| ..+.++++|++|+++++.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 321 2344 455666777777777665
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00013 Score=71.15 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=39.9
Q ss_pred CCccccchhhHHHHHHHHHccC---------------CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQ---------------PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|+++.++++.+++.... ...+.+.|+|+.|+||||+|+.+++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997510 12467889999999999999999987
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.44 E-value=0.00066 Score=60.22 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHH-------HHc-cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDL-------LIE-RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~-------L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.++..+++... +.. ......-+-|+|+.|+|||++|+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678888877776662 321 1345677889999999999999999887
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.43 E-value=0.00025 Score=65.86 Aligned_cols=49 Identities=6% Similarity=-0.057 Sum_probs=38.9
Q ss_pred CCCccccchhhHHHHHHHHHc----------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIE----------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-++++|.++.++.+.+.+.. .....+-+.|+|+.|+|||+||+.+++.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999988753 1123456779999999999999999877
No 170
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.42 E-value=0.00021 Score=65.93 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=50.9
Q ss_pred CCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCccEEeecCCccccccCh-hhhcCCCCC
Q 048347 242 PHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPE-ELWRIKALR 318 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~L~ 318 (351)
++++.|+|+.+ .+..+|.. +.++++|++|+|++|...+.+|.. +.++++|..+...++..+..+|. .+.++++|+
T Consensus 30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 46777777332 34566653 577777777777777444556653 56676666554444456666644 346677777
Q ss_pred EEEecCC
Q 048347 319 KLESWWP 325 (351)
Q Consensus 319 ~L~l~~~ 325 (351)
+|++++.
T Consensus 108 ~L~l~~n 114 (350)
T 4ay9_X 108 YLLISNT 114 (350)
T ss_dssp EEEEEEE
T ss_pred ccccccc
Confidence 7777654
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.00039 Score=63.93 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|.++-++.+...+..+. ..-+.++|+.|+||||+|+.+...
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 447898888888888887653 222789999999999999998876
No 172
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.35 E-value=0.00038 Score=69.52 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=30.8
Q ss_pred CCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccCh
Q 048347 242 PHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPE 309 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~ 309 (351)
++|++|+++.+ .+..+|. .+++|++|+|++| .+..+|. .+++|++|++++| .+..+|.
T Consensus 61 ~~L~~L~L~~N--~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDN--NLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA 118 (622)
T ss_dssp TTCSEEEECSC--CCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC
T ss_pred CCCcEEEecCC--CCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC
Confidence 56666666322 2334444 4556666666666 4555654 4455555555553 3444443
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.32 E-value=0.00032 Score=64.03 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+..++.........+.|+|+.|+||||||+.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34455555443323456779999999999999999987
No 174
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.31 E-value=0.0014 Score=62.65 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=38.6
Q ss_pred CCCCccccchhhHHHHHHHHHc---------c-CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIE---------R-QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.=++++|.++.++.|.+.+.. + ....+-+.++|+.|+|||+||+.+++.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3345689999999999887731 0 122356779999999999999999987
No 175
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.30 E-value=0.00033 Score=63.31 Aligned_cols=47 Identities=9% Similarity=0.175 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHHccC-------CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQ-------PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.+..++.+...+.... .....+.++|+.|+|||++|+.++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 457899999999888886531 12357889999999999999999887
No 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.29 E-value=0.00028 Score=63.42 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=39.2
Q ss_pred CCCCccccchhhHHHHHHHHHcc----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIER----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..-++++|.++.++.+.+.+... ....+-+.|+|+.|+||||+|+.+++.
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34467999999999998887431 112456779999999999999999887
No 177
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.26 E-value=0.00097 Score=61.78 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=38.1
Q ss_pred CCCCccccchhhHHHHHHHHHcc----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIER----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.=++++|.++.++.|.+.+... ....+-|.++|+.|+|||+||+.+++.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 33456899999999998887321 112234678999999999999999987
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.25 E-value=0.00077 Score=63.23 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHHcc----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|.+..++.+...+... ....+-+-|+|..|+|||+||+.+++.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999888321 112356779999999999999999876
No 179
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.25 E-value=0.00092 Score=60.56 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++|.+....++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 56899999999998888653222334568999999999999999885
No 180
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.21 E-value=0.00043 Score=71.77 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-+.++||+++++.+.+.+..... .-+.++|..|+|||++|+.++..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~--~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999876532 23568999999999999999876
No 181
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.16 E-value=0.00058 Score=67.42 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=45.2
Q ss_pred CCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCccccccChhhhcCCCC--
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLRKFPEELWRIKAL-- 317 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L-- 317 (351)
.+++|+.|+++.+. +..+|. .+++|++|++++| .+..+|. ++ ++|++|+|++| .+..+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 138 LPALLEYINADNNQ--LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHH 204 (571)
T ss_dssp CCTTCCEEECCSSC--CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC-------
T ss_pred cCccccEEeCCCCc--cCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhc
Confidence 45677777773332 223554 4567777777777 5666776 55 77777777774 5667776 543 55
Q ss_pred -----CEEEecCCC
Q 048347 318 -----RKLESWWPR 326 (351)
Q Consensus 318 -----~~L~l~~~~ 326 (351)
+.|++++..
T Consensus 205 ~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 205 SEETEIFFRCRENR 218 (571)
T ss_dssp ---CCEEEECCSSC
T ss_pred ccccceEEecCCCc
Confidence 777777643
No 182
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.14 E-value=0.0011 Score=67.67 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++||+++++.+.+.|.... ..-+.++|..|+|||++|+.++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999887653 233568999999999999999876
No 183
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.00087 Score=58.87 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=35.6
Q ss_pred CCCccccchhhHHHHHHHHHc---c-------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIE---R-------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-++++|.++.++++.+.+.. . ....+-+.|+|+.|+||||||+.+++.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 335689999888887765432 1 011233779999999999999999887
No 184
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.0025 Score=57.68 Aligned_cols=115 Identities=11% Similarity=-0.040 Sum_probs=65.3
Q ss_pred cchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC-cccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCC
Q 048347 22 DLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS-SYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPL 97 (351)
Q Consensus 22 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~ 97 (351)
|-++-.+.+.+.+..+. ....-++|+.|+||||+|+.+.+. ......+.....+..+ ..+ +-.+++...+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~i-d~ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI-DDIRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH-HHHHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCH-HHHHHHHHHHhhc
Confidence 34555667777776553 678889999999999999998763 1111112222333211 111 1112222222211
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 98 SALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
. ..+++-++|+|+++.. ++.+.+...+......+++|+ |.+.
T Consensus 78 p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 78 P--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp C--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred c--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 0 1245678899999754 567778877776666777777 6543
No 185
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.05 E-value=0.00027 Score=62.75 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCCceEEEEecccccC-ceeeeCCCCCCcccEEEEecCCccccccccccccC--CccEEeecCCccccccCh-------
Q 048347 240 KLPHLKVLKLKRSSYSG-RKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQ--KLKSLIVNPCAYLRKFPE------- 309 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~c~~l~~lP~------- 309 (351)
++++|+.|+|+.|.... ..+|..+..+++|++|+|++| .+..+. .++.+. +|+.|+|.+|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35677777774333221 123333446777777777777 465552 344444 777777777554444542
Q ss_pred hhhcCCCCCEEEecCCC
Q 048347 310 ELWRIKALRKLESWWPR 326 (351)
Q Consensus 310 ~i~~L~~L~~L~l~~~~ 326 (351)
-+..+++|+.||-...+
T Consensus 246 il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 246 IRERFPKLLRLDGHELP 262 (267)
T ss_dssp HHHHCTTCCEESSCBCC
T ss_pred HHHHCcccCeECCcCCC
Confidence 24566777777655443
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.02 E-value=0.0017 Score=53.77 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred eeeCCCCCCcccEEEEecCCccccc-cccccccCCccEEeecCCccccccC-hhhhcC----CCCCEEEecCCC---hhH
Q 048347 259 LVCGHGGFPRQEILHLKSMLWLEEW-KMETGAMQKLKSLIVNPCAYLRKFP-EELWRI----KALRKLESWWPR---PEL 329 (351)
Q Consensus 259 lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lP-~~i~~L----~~L~~L~l~~~~---~~~ 329 (351)
+|.....-.+|+.|++++|. ++.. -..+..+++|+.|+|++|..+..-- ..+..+ ++|++|++++|+ ..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 45433233579999999995 5432 2246789999999999998765321 123333 369999999986 333
Q ss_pred HhhccccccCceeeEEecC
Q 048347 330 RQSLHKFEEIDRLDMQIYP 348 (351)
Q Consensus 330 ~~~l~~~~~~~~~~~~~~P 348 (351)
...+.+...+....+...|
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 4455666666666666655
No 187
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.01 E-value=0.00019 Score=57.42 Aligned_cols=47 Identities=11% Similarity=-0.047 Sum_probs=34.0
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-+++|.++..+++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46889999999988887542111233668999999999999999988
No 188
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.00 E-value=0.0026 Score=54.09 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCC-------CCcc-CCCCCHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLS-------ALSE-ILDNDFE 109 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~-------~~~~-~~~~~~~ 109 (351)
.-.++.|.|.+|+||||||..+.. . .-..++|++.. ++...+.. +...+.... .... .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446899999999999999999987 1 12346666654 45544443 333322210 0000 0111123
Q ss_pred HHHHHHHHhcCCceEEEEEeCCC
Q 048347 110 MKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 110 ~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
+....++..++.+.-++|+|..-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34445555554456788899874
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.00 E-value=0.00031 Score=64.38 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=39.2
Q ss_pred CCccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|+++.++++..++... ......+.|+|+.|+|||++|+.+++.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999999988652 233455789999999999999999776
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.91 E-value=0.0053 Score=56.21 Aligned_cols=128 Identities=9% Similarity=-0.012 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCccccc--CCCeeEEEEEeCCHHHHHHHHHHHhCCCC---
Q 048347 24 EDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN--YFDCCAWVYYQLSLDMMLDAIMKSLMPLS--- 98 (351)
Q Consensus 24 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~i~~~~~~~~--- 98 (351)
++..+.+.+.+..+. -...+-++|+.|+|||++|+.+........ .+..+- .-..-+.+...-..+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~-------~c~~c~~~~~~~~~d~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG-------HCRGCQLMQAGTHPDYYTL 79 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCS-------CSHHHHHHHHTCCTTEEEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCC-------CCHHHHHHhcCCCCCEEEE
Confidence 455666677665442 345677899999999999998865411110 000000 0000111110000000
Q ss_pred CCc-cCCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Eeec
Q 048347 99 ALS-EILDNDFEMKKNTLHNY----LKNKRYLIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-ALIH 159 (351)
Q Consensus 99 ~~~-~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR~~ 159 (351)
... .......+++.+.+... ..+++-++|+|+++.. +..+.+...+.....+..+|+ |.+.
T Consensus 80 ~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 80 APEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred eccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 000 00112333333322221 1356778999999754 566777777776665677776 7654
No 191
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.90 E-value=0.00051 Score=62.39 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=46.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
-+++.|+|++|+|||+||.++... .-..+.|++.. ... + .. -..+.+...+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~----------v--~~-----~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEP----------L--SG-----YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCS----------S--TT-----CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhh----------h--hh-----hhcCHHHHHHHHHHHH
Confidence 456789999999999999999765 11134566662 000 0 00 0134566666677777
Q ss_pred CCceEEEEEeCCCCh
Q 048347 120 KNKRYLIVIQDVWRG 134 (351)
Q Consensus 120 ~~k~~LlVLDdv~~~ 134 (351)
+..+ ++|+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 6666 9999999643
No 192
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.88 E-value=0.0016 Score=57.49 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=34.1
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++|.+....++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999999888777542222245668999999999999999987
No 193
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.002 Score=61.22 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=39.5
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|.+.=+++.|.++.+++|.+.+... -...+=|-++|++|.|||+||+++++.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4444466789999999988877431 122355668999999999999999998
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0015 Score=61.17 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=37.0
Q ss_pred CCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
=+++.|.++.+++|.+.+.-. -+..+=|-++|++|.|||.||+++++.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 355789999999988777431 122344668999999999999999988
No 195
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.82 E-value=0.00091 Score=56.89 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=29.4
Q ss_pred hHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 26 KMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 26 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.++|.+.+....++-.+|+|+|..|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555433345689999999999999999998776
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.82 E-value=0.00088 Score=64.49 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.+||++++++.+...+..... . -+.++|..|+|||++|+.++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~-~-~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK-N-NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS-C-EEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCC-C-CeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999876432 2 3458999999999999999877
No 197
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.82 E-value=0.0019 Score=55.58 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=38.9
Q ss_pred CCccccc---hhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 17 NKVDLDL---EDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 17 ~~~~vGr---~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
-++++|. ++.++.+..++... ....+.|+|+.|+||||||+.+++. .......+.+++..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 3567763 34455566655443 3467789999999999999999887 43333344555543
No 198
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0022 Score=60.96 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=38.0
Q ss_pred CCCCccccchhhHHHHHHHHHc-----------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIE-----------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.=+++.|.++.+++|.+.+.. +-...+=|-++|+.|.|||+||+++++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3335688999999999887632 1123445668999999999999999988
No 199
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0024 Score=60.51 Aligned_cols=52 Identities=13% Similarity=-0.000 Sum_probs=39.2
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|.+.-+++.|.++.+++|.+.+... -+..+=|-++|++|.|||+||+++++.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344466889999999998877421 122344678999999999999999988
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.76 E-value=0.0016 Score=55.00 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHcc-CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 23 LEDKMEELLDLLIER-QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 23 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|++..+++.+.+... ..+..+|+|.|..|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456677787777653 245689999999999999999998765
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.73 E-value=0.0013 Score=63.66 Aligned_cols=93 Identities=9% Similarity=0.042 Sum_probs=57.7
Q ss_pred CccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMM 86 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 86 (351)
++++|.++.++++.+++... ....+-|-|+|..|+|||++|+.+++. ... -++.+. ..++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~-----~fv~vn--~~~l 274 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA-----FFFLIN--GPEI 274 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS-----EEEEEE--HHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC-----CEEEEE--chHh
Confidence 45899999999998887532 123345779999999999999999877 322 233333 1111
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVW 132 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~ 132 (351)
. ..+. ..........+.....++..+|+||+++
T Consensus 275 ~----~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 275 M----SKLA---------GESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp H----TSCT---------THHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred h----hhhc---------chhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 1 0000 1112233444444555677899999993
No 202
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.68 E-value=0.00064 Score=66.92 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCCCceEEEEecccccCce--eeeCCCCCCcccEEEEecCCcccc-----ccccccccCCccEEeecCCc-cc--cccCh
Q 048347 240 KLPHLKVLKLKRSSYSGRK--LVCGHGGFPRQEILHLKSMLWLEE-----WKMETGAMQKLKSLIVNPCA-YL--RKFPE 309 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~c~-~l--~~lP~ 309 (351)
.+++|++|+++ ++..... ++.....+++|++|++++|. +.. ++.-...+++|+.|++++|. .+ ..++.
T Consensus 128 ~~~~L~~L~L~-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 128 SFKNFKVLVLS-SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HCTTCCEEEEE-SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred hCCCCcEEeCC-CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 46788888883 4322222 44444467888888888874 332 33333466788888888764 11 12222
Q ss_pred hhhcCCCCCEEEecCC
Q 048347 310 ELWRIKALRKLESWWP 325 (351)
Q Consensus 310 ~i~~L~~L~~L~l~~~ 325 (351)
-+.++++|++|+++++
T Consensus 206 l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHCTTCCEEECCTT
T ss_pred HHHhCCCCcEEecCCC
Confidence 3355788888888887
No 203
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.67 E-value=0.003 Score=64.49 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=58.8
Q ss_pred CccccchhhHHHHHHHHHc---cC--------CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHH
Q 048347 18 KVDLDLEDKMEELLDLLIE---RQ--------PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMM 86 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~---~~--------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 86 (351)
+++.|.++.+++|.+.+.- .. ...+=|-++|+.|.|||+||+++++. ...+| +.++ ..++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~-----~~v~--~~~l 274 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF-----FLIN--GPEI 274 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE-----EEEE--HHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE-----EEEE--hHHh
Confidence 4578899999998887632 11 22345778999999999999999998 43332 2332 1111
Q ss_pred HHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 87 LDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
. ... .......+.+.+....+...++|+||+++.
T Consensus 275 ----~----sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 275 ----M----SKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ----H----SSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ----h----ccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1 111 112233444455555567889999999963
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.64 E-value=0.0011 Score=60.80 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHHcc---CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIER---QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.+..++.+...+... +.....+.++|+.|+||||||+.++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45789888778777666542 233457889999999999999999887
No 205
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.60 E-value=0.00044 Score=65.88 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCCCceEEEEecccccC---ceeeeCCCCCCcccEEEEecCCcccc-ccccc-cccC----CccEEeecCCcccc----
Q 048347 239 EKLPHLKVLKLKRSSYSG---RKLVCGHGGFPRQEILHLKSMLWLEE-WKMET-GAMQ----KLKSLIVNPCAYLR---- 305 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~---~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~i-~~L~----~L~~L~l~~c~~l~---- 305 (351)
..+++|++|+++.+.... ..++..+..+++|++|++++| .+.. -+..+ ..+. +|++|++++|. +.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHH
Confidence 467899999995443221 145666777899999999998 4554 23333 3355 69999999975 44
Q ss_pred -ccChhhhcCCCCCEEEecCCC
Q 048347 306 -KFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 306 -~lP~~i~~L~~L~~L~l~~~~ 326 (351)
.+|..+.++++|++|+++++.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc
Confidence 678889999999999999876
No 206
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.0034 Score=53.71 Aligned_cols=89 Identities=16% Similarity=0.030 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCc---------c---------
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALS---------E--------- 102 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~---------~--------- 102 (351)
-.+++|.|..|+|||||++.+... ....-..+.|+.......++...+. ++....... .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSSCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcccCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCcee
Confidence 368999999999999999999865 2222123455543344444444332 333211000 0
Q ss_pred -CCCCCHHHHHHHHHHhcCC-c--eEEEEEeCCC
Q 048347 103 -ILDNDFEMKKNTLHNYLKN-K--RYLIVIQDVW 132 (351)
Q Consensus 103 -~~~~~~~~~~~~l~~~L~~-k--~~LlVLDdv~ 132 (351)
....+..++...+...+.. + ..++|+|..-
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0112555665555555432 2 3489999986
No 207
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0023 Score=60.65 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=38.4
Q ss_pred CCCCCccccchhhHHHHHHHHHc----c-------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIE----R-------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.=+++.|.++.+++|.+.+.. . -+..+=|-++|++|.|||+||+++++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 33345688999999998877532 1 123455668999999999999999988
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.56 E-value=0.0012 Score=59.31 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHHcc------------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIER------------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.++.++.+...+... .....-+-++|..|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999998887541 112345668999999999999999887
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.56 E-value=0.002 Score=61.94 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHHHHc--c--------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIE--R--------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.++.++++.+.+.. . ..-.+-|.++|+.|+|||+||+.+++.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999988888776532 1 011123679999999999999999987
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.54 E-value=0.0025 Score=65.51 Aligned_cols=47 Identities=6% Similarity=-0.001 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHHc-----------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIE-----------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.++.++++.+++.. .-....-|.|+|..|+||||||+.+...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999999999888853 1123456889999999999999999887
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.52 E-value=0.0047 Score=57.07 Aligned_cols=99 Identities=14% Similarity=-0.004 Sum_probs=59.6
Q ss_pred HHHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCc-c
Q 048347 27 MEELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALS-E 102 (351)
Q Consensus 27 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~-~ 102 (351)
...|-..|- .+=++-.++.|.|..|+||||||.++... ....-..++|++.. ++.. .+++++...... -
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLI 118 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhh
Confidence 344555453 22244579999999999999999999876 33322345677655 4432 455555432110 0
Q ss_pred CCCCCHHHHHHHHHHhcC-CceEEEEEeCCC
Q 048347 103 ILDNDFEMKKNTLHNYLK-NKRYLIVIQDVW 132 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~ 132 (351)
....+.+++...+...++ .+.-++|+|.+-
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 119 SQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 134456666666666554 445588899874
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.52 E-value=0.0057 Score=58.01 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988765
No 213
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.52 E-value=0.0028 Score=56.93 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=49.8
Q ss_pred hHHHHHHHHHc----cCCCeEEEEEEcCCCChHHHHHHHHhCCccccc-CCCeeEEEEEe--CCHHHHHHHHHHHhC---
Q 048347 26 KMEELLDLLIE----RQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN-YFDCCAWVYYQ--LSLDMMLDAIMKSLM--- 95 (351)
Q Consensus 26 ~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~--~~~~~~~~~i~~~~~--- 95 (351)
-.+.|.+.+.. ...+..+|+|.|..|+||||||+.+........ .......|+.. +-..+....+.....
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNK 91 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccc
Confidence 34444444433 345678999999999999999999877622211 12233333444 222344444443311
Q ss_pred ---CCCCCccCCCCCHHHHHHHHHHhcCC
Q 048347 96 ---PLSALSEILDNDFEMKKNTLHNYLKN 121 (351)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~~~l~~~L~~ 121 (351)
.... ++..+...+.+.+...-.+
T Consensus 92 l~~~~g~---p~a~d~~~l~~~l~~l~~g 117 (290)
T 1odf_A 92 LLQGRGL---PGTHDMKLLQEVLNTIFNN 117 (290)
T ss_dssp GGSSSCS---TTSBCHHHHHHHHHHHTC-
T ss_pred hhhhccC---cchhHHHHHHHHHHHhhcc
Confidence 1111 2445566666666655444
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.49 E-value=0.0032 Score=55.81 Aligned_cols=60 Identities=23% Similarity=0.089 Sum_probs=48.4
Q ss_pred CCCCcccEEEEecCCccccc---cccccccCCccEEeecCCccccccChhhhcCC--CCCEEEecCCC
Q 048347 264 GGFPRQEILHLKSMLWLEEW---KMETGAMQKLKSLIVNPCAYLRKFPEELWRIK--ALRKLESWWPR 326 (351)
Q Consensus 264 ~~l~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~--~L~~L~l~~~~ 326 (351)
..+++|++|+|++| .+..+ |..++.+++|+.|+|++| .+..+ .++..++ +|++|++++.+
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCc
Confidence 46889999999999 56654 456779999999999984 57666 4566666 99999999866
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.48 E-value=0.0021 Score=65.62 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-+.+||+++.++.+...+..... .. +.++|..|+|||++|+.+...
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~-~~-vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTK-NN-PVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSS-CE-EEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCC-CC-eEEECCCCCCHHHHHHHHHHH
Confidence 35699999999999999976432 23 568999999999999999876
No 216
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.48 E-value=0.00097 Score=61.68 Aligned_cols=85 Identities=14% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCCC-CceEEEEecccccCceeeeCCCC-----CCcccEEEEecCCccccc-cccccc----c-CCccEEeecCCccccc
Q 048347 239 EKLP-HLKVLKLKRSSYSGRKLVCGHGG-----FPRQEILHLKSMLWLEEW-KMETGA----M-QKLKSLIVNPCAYLRK 306 (351)
Q Consensus 239 ~~l~-~L~~L~l~~~~~~~~~lp~~~~~-----l~~L~~L~L~~~~~l~~l-p~~i~~----L-~~L~~L~l~~c~~l~~ 306 (351)
..++ +|++|+++.+.... ..+..+.. +++|++|++++| .++.. +..++. + ++|++|++++|. +..
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 123 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSS 123 (362)
T ss_dssp HTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred HhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCc
Confidence 3566 78888884332221 22222222 267888888887 35543 333333 3 678888888754 444
Q ss_pred cCh-hh----hc-CCCCCEEEecCCC
Q 048347 307 FPE-EL----WR-IKALRKLESWWPR 326 (351)
Q Consensus 307 lP~-~i----~~-L~~L~~L~l~~~~ 326 (351)
.+. .+ .. .++|++|+++++.
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCc
Confidence 443 22 23 2578888888765
No 217
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.47 E-value=0.0074 Score=55.14 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998766
No 218
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.44 E-value=0.0047 Score=55.90 Aligned_cols=89 Identities=9% Similarity=0.043 Sum_probs=47.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe-CCHHH--HHHHHHHHhCCCCCCccCCCCCHHH-HHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ-LSLDM--MLDAIMKSLMPLSALSEILDNDFEM-KKNTL 115 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l 115 (351)
...+++|+|.+|+||||++..+... .+..-..+..+... +.... -+...++......- .+....+... ..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI-SHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE-CCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEE-ecCCccCHHHHHHHHH
Confidence 4579999999999999999999876 33332234455544 33321 22334444432211 0111112222 23345
Q ss_pred HHhcCCceEEEEEeCC
Q 048347 116 HNYLKNKRYLIVIQDV 131 (351)
Q Consensus 116 ~~~L~~k~~LlVLDdv 131 (351)
...+..+.-++++|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 5545444457777865
No 219
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.0015 Score=53.26 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=47.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCC-cc-----CCCCCHHHHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSAL-SE-----ILDNDFEMKKNTL 115 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~-~~-----~~~~~~~~~~~~l 115 (351)
.+|+|.|+.|+||||+|+.+ .. . .|. +++ ..++++.....-...... .. ..........+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~--~--g~~---~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE--R--GAK---VIV----MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLC 69 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH--T--TCE---EEE----HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH--C--CCc---EEE----HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHH
Confidence 47899999999999999999 33 1 121 222 234444443332210000 00 0000111223344
Q ss_pred HHhc-CCceEEEEEeCCCChhhHHHHHhhcC
Q 048347 116 HNYL-KNKRYLIVIQDVWRGDIWDFLKEALP 145 (351)
Q Consensus 116 ~~~L-~~k~~LlVLDdv~~~~~~~~l~~~l~ 145 (351)
.+.+ ......+|+|++....+...+.....
T Consensus 70 ~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 70 VEELGTSNHDLVVFDGVRSLAEVEEFKRLLG 100 (179)
T ss_dssp HHHHCSCCCSCEEEECCCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC
Confidence 4455 23344578899966666666666553
No 220
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.41 E-value=0.00096 Score=65.64 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCCcccEEEEecCCccc--cccccccccCCccEEeecCCccc-cccChhhhcCCCCCEEEecCCC
Q 048347 265 GFPRQEILHLKSMLWLE--EWKMETGAMQKLKSLIVNPCAYL-RKFPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 265 ~l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~c~~l-~~lP~~i~~L~~L~~L~l~~~~ 326 (351)
.+++|++|++++|. +. .+|..+..+++|++|++++|..- ..+|..+.++++|+.|++++++
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 36677777777773 43 24544567788888888887621 2245555678888888888776
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.41 E-value=0.0013 Score=58.11 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=36.5
Q ss_pred CCCccccchhhHHHHHHHHHc----------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIE----------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-++++|.++.++.+.+.+.. +....+-+.++|+.|+|||+||+.+++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 346799999998888877641 0011223668999999999999999987
No 222
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.41 E-value=0.00063 Score=64.77 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCceEEEEecccccCc---eeeeCCCCCCcccEEEEecCCccccc-cccccc-----cCCccEEeecCCcccc-----cc
Q 048347 242 PHLKVLKLKRSSYSGR---KLVCGHGGFPRQEILHLKSMLWLEEW-KMETGA-----MQKLKSLIVNPCAYLR-----KF 307 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~---~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~-----L~~L~~L~l~~c~~l~-----~l 307 (351)
++|++|+++.+..... .++..+..+++|++|++++| .+... +..+.. .++|++|++++|. +. .+
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l 390 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL 390 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHH
Confidence 4677777732222111 13444556678888888888 45543 333332 5688999998864 54 78
Q ss_pred ChhhhcCCCCCEEEecCCC
Q 048347 308 PEELWRIKALRKLESWWPR 326 (351)
Q Consensus 308 P~~i~~L~~L~~L~l~~~~ 326 (351)
|..+.++++|++|++++++
T Consensus 391 ~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHCCCCCEEECCSSS
T ss_pred HHHHHhCCCccEEECCCCC
Confidence 8888888999999998875
No 223
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0051 Score=57.95 Aligned_cols=52 Identities=13% Similarity=0.012 Sum_probs=38.6
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.+.=+++.|.|+.+++|.+.+... -+..+=|-++|+.|.|||.||+++++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3333355788999999988876421 122345668999999999999999988
No 224
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.30 E-value=0.012 Score=56.90 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=36.9
Q ss_pred CCCCCccccchhhHHHHHHHHHc--cC--------CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIE--RQ--------PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.-++++|.++.++++.+.+.. .. .-.+=+.|+|+.|+||||||+.++..
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34446789999888887776532 10 00112789999999999999999987
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.0087 Score=51.55 Aligned_cols=93 Identities=4% Similarity=-0.027 Sum_probs=50.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccc----CCCeeEEEEEe--CCHHHHHHHHHHHhCCCC-----CCccCCCCCH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKN----YFDCCAWVYYQ--LSLDMMLDAIMKSLMPLS-----ALSEILDNDF 108 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~ 108 (351)
.-.++.|+|..|+||||||..+........ .-..++|++.. +....+ ..+++.+.... ...-....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999999876411211 12356676655 344443 34445554321 0000012223
Q ss_pred HHH---HHHHHHhcC-CceEEEEEeCCCC
Q 048347 109 EMK---KNTLHNYLK-NKRYLIVIQDVWR 133 (351)
Q Consensus 109 ~~~---~~~l~~~L~-~k~~LlVLDdv~~ 133 (351)
.+. .+.+.+.+. .+.-++|+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 332 233444443 4667888998853
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.29 E-value=0.0025 Score=53.04 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.28 E-value=0.0091 Score=56.66 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999999999999888765
No 228
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.26 E-value=0.0023 Score=59.38 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=61.3
Q ss_pred CCCCceEEEEecc--cccCc----eeee--CCCCCCcccEEEEecCCccccccccc---cccCCccEEeecCCccccc--
Q 048347 240 KLPHLKVLKLKRS--SYSGR----KLVC--GHGGFPRQEILHLKSMLWLEEWKMET---GAMQKLKSLIVNPCAYLRK-- 306 (351)
Q Consensus 240 ~l~~L~~L~l~~~--~~~~~----~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~i---~~L~~L~~L~l~~c~~l~~-- 306 (351)
.+|+|+.|+|+.+ .+.+. .+.. ....+++|++|+|++|......+..+ +.+++|++|+|+.| .+..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHH
Confidence 5788888888421 11111 1111 12468999999999884322233222 46889999999875 4543
Q ss_pred ---cChhhhcCCCCCEEEecCCC--hhHHhhccc
Q 048347 307 ---FPEELWRIKALRKLESWWPR--PELRQSLHK 335 (351)
Q Consensus 307 ---lP~~i~~L~~L~~L~l~~~~--~~~~~~l~~ 335 (351)
++.++.++++|+.|+++++. .+....+.+
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 67777889999999998764 455555554
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.22 E-value=0.0022 Score=52.17 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.22 E-value=0.011 Score=53.18 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998766
No 231
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.21 E-value=0.002 Score=52.92 Aligned_cols=23 Identities=0% Similarity=0.039 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999887
No 232
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.19 E-value=0.0015 Score=64.29 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=58.7
Q ss_pred CCCCceEEEEecccccCceeeeCCC-CCCcccEEEEecCCcccc--ccccccccCCccEEeecCCcccc----ccChhhh
Q 048347 240 KLPHLKVLKLKRSSYSGRKLVCGHG-GFPRQEILHLKSMLWLEE--WKMETGAMQKLKSLIVNPCAYLR----KFPEELW 312 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~c~~l~----~lP~~i~ 312 (351)
.+++|++|+++.+. .....+..+. .+++|++|++++|..++. ++.-..++++|++|++++|..-. .++.-..
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 57889999995433 2222222232 578999999999865654 56556689999999999875211 2333334
Q ss_pred cCCCCCEEEecCCC
Q 048347 313 RIKALRKLESWWPR 326 (351)
Q Consensus 313 ~L~~L~~L~l~~~~ 326 (351)
++++|++|+++++.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 67799999999886
No 233
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.0025 Score=55.86 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999775
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.17 E-value=0.0025 Score=52.82 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999764
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.16 E-value=0.0026 Score=53.55 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++|.|+|+.|+||||+|+.+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 236
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.13 E-value=0.015 Score=53.01 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=52.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccC----CCeeEEEEEe--CCHHHHHHHHHHHhCCCCC-----CccCCCCCH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY----FDCCAWVYYQ--LSLDMMLDAIMKSLMPLSA-----LSEILDNDF 108 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~ 108 (351)
.-.++.|.|..|+||||||.++......... -..++|++.. ++.+.+. .++..++.... ..-....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468899999999999999998765221111 2356777766 5566554 34555543211 000012233
Q ss_pred H---HHHHHHHHhcC--CceEEEEEeCCC
Q 048347 109 E---MKKNTLHNYLK--NKRYLIVIQDVW 132 (351)
Q Consensus 109 ~---~~~~~l~~~L~--~k~~LlVLDdv~ 132 (351)
+ ++.+.+...++ .+--++|+|.+-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 3 23445555553 456788888884
No 237
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.10 E-value=0.011 Score=54.76 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=58.2
Q ss_pred HHHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCC-cc
Q 048347 27 MEELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSAL-SE 102 (351)
Q Consensus 27 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~-~~ 102 (351)
...|-.+|. .+=++-.++.|.|.+|+||||||.++... ....-..++|++.. ++.. .++.++..... .-
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLV 131 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHcee
Confidence 334444443 12133467888999999999999988776 32222357788776 3332 24444432110 00
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 103 ILDNDFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
.+..+.+++.+.+....+. +--+||+|.+-
T Consensus 132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 1234566777777666653 34588999884
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.09 E-value=0.026 Score=51.76 Aligned_cols=57 Identities=5% Similarity=0.018 Sum_probs=37.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccc----CCCeeEEEEEe--CCHHHHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN----YFDCCAWVYYQ--LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~--~~~~~~~~~i~~~~~~ 96 (351)
+.-.++.|.|..|+||||||.+++....... .-..++|++.. ++...+. .++..++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 4567899999999999999999876522211 12356777766 5665554 34455443
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.08 E-value=0.0047 Score=53.96 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=34.7
Q ss_pred CCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-++++|.++..+++.++...- ..... +.|+|+.|+||||||+.++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 3356889887777776654321 01123 889999999999999999987
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.08 E-value=0.0032 Score=58.33 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHHc-------------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIE-------------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.++.++.+...+.. ......-+.++|+.|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 479999999998888731 1112345778999999999999999987
No 241
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.05 E-value=0.0038 Score=52.52 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+|+|+|+.|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999887
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.03 E-value=0.0037 Score=51.22 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5788999999999999999987
No 243
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.02 E-value=0.0023 Score=51.49 Aligned_cols=24 Identities=4% Similarity=0.069 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-..++|+|..|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458889999999999999999887
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.01 E-value=0.0053 Score=54.62 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=33.8
Q ss_pred CCCCccccchhhHHHHHHHHHcc------------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 15 WDNKVDLDLEDKMEELLDLLIER------------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 15 ~~~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.=+++.|.++-+++|.+.+... ..... +.++|+.|+||||||+.++..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 33456888888888887765211 11223 889999999999999999886
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.01 E-value=0.0047 Score=50.57 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.+++|.|+.|+||||+|+.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998765
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.99 E-value=0.0055 Score=54.44 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=36.2
Q ss_pred CCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 14 SWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 14 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.-++++|.++.++++.++...- ..... +.|+|+.|+||||||+.++..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 344456899988877776655321 01123 789999999999999999987
No 247
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.99 E-value=0.0018 Score=59.81 Aligned_cols=82 Identities=15% Similarity=0.011 Sum_probs=56.3
Q ss_pred CCceEEEEecccccCceeee----CCCCC-CcccEEEEecCCcccccccc-cc----cc-CCccEEeecCCcccc-----
Q 048347 242 PHLKVLKLKRSSYSGRKLVC----GHGGF-PRQEILHLKSMLWLEEWKME-TG----AM-QKLKSLIVNPCAYLR----- 305 (351)
Q Consensus 242 ~~L~~L~l~~~~~~~~~lp~----~~~~l-~~L~~L~L~~~~~l~~lp~~-i~----~L-~~L~~L~l~~c~~l~----- 305 (351)
++|++|+++.+.... ..+. .+..+ ++|++|++++| .++..+.. ++ .+ .+|++|+|++|. +.
T Consensus 80 ~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH
T ss_pred CCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH
Confidence 899999995443222 2222 13344 78999999999 56665542 33 32 589999999864 44
Q ss_pred ccChhhhcCC-CCCEEEecCCC
Q 048347 306 KFPEELWRIK-ALRKLESWWPR 326 (351)
Q Consensus 306 ~lP~~i~~L~-~L~~L~l~~~~ 326 (351)
.++..+..+. +|++|+++++.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhcCCccccEeeecCCC
Confidence 5666677776 99999999876
No 248
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.97 E-value=0.0028 Score=51.78 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.97 E-value=0.0039 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.96 E-value=0.012 Score=54.20 Aligned_cols=99 Identities=15% Similarity=0.004 Sum_probs=57.5
Q ss_pred HHHHHHHHH-ccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCcc-
Q 048347 27 MEELLDLLI-ERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALSE- 102 (351)
Q Consensus 27 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~- 102 (351)
...|-.+|. .+=++-.++.|.|..|+||||||.++... ....=..++|++.. ++.. .++.++.......
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i 118 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLV 118 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEE
Confidence 334444443 22234568999999999999999998866 33232356787766 4332 2445543211000
Q ss_pred CCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 048347 103 ILDNDFEMKKNTLHNYLKN-KRYLIVIQDVW 132 (351)
Q Consensus 103 ~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 132 (351)
....+.++..+.++...+. +.-++|+|.+-
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred ecCCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence 1233556666655555543 45688999884
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.95 E-value=0.0042 Score=51.62 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.+++|.|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 252
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.95 E-value=0.011 Score=58.13 Aligned_cols=84 Identities=12% Similarity=-0.096 Sum_probs=52.8
Q ss_pred CCCCCceEEEEeccccc--CceeeeCCCCCCcccEEEEecCCccccccccccccCCccEEeecCCcccc--ccChhhhcC
Q 048347 239 EKLPHLKVLKLKRSSYS--GRKLVCGHGGFPRQEILHLKSMLWLEEWKMETGAMQKLKSLIVNPCAYLR--KFPEELWRI 314 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~--~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~c~~l~--~lP~~i~~L 314 (351)
..+++|+.|.++..... ....+..+..+++|+.|+++++ ....+|..+..+++|++|++++|. +. .++..+.++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC 317 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC
Confidence 34566666666211111 0123344566677778877775 466777777788888888888876 32 223345778
Q ss_pred CCCCEEEecC
Q 048347 315 KALRKLESWW 324 (351)
Q Consensus 315 ~~L~~L~l~~ 324 (351)
++|++|++++
T Consensus 318 ~~L~~L~L~~ 327 (592)
T 3ogk_B 318 PNLEVLETRN 327 (592)
T ss_dssp TTCCEEEEEG
T ss_pred cCCCEEeccC
Confidence 8888888874
No 253
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.94 E-value=0.0048 Score=52.09 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...+|+|.|+.|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999876
No 254
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.94 E-value=0.0048 Score=56.18 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|+++.++.+...+..+. -+-++|..|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHH
Confidence 578999999999888887642 4668999999999999999876
No 255
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.92 E-value=0.0066 Score=58.13 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHH---HccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLL---IERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.++.++.+..++ ..+....+-+-++|+.|+|||++|+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 67899999888665544 333222244668999999999999999988
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.92 E-value=0.0039 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 257
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.92 E-value=0.0038 Score=51.74 Aligned_cols=23 Identities=4% Similarity=0.172 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999887
No 258
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.92 E-value=0.0039 Score=52.50 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.+++|.|+.|+||||+|+.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.91 E-value=0.0046 Score=52.30 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|+|.|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998775
No 260
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.89 E-value=0.0025 Score=59.43 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=52.2
Q ss_pred CCCceEEEEecccccCc---eeeeCC-CCCCcccEEEEecCCcccc-----ccccccccCCccEEeecCCcccc-----c
Q 048347 241 LPHLKVLKLKRSSYSGR---KLVCGH-GGFPRQEILHLKSMLWLEE-----WKMETGAMQKLKSLIVNPCAYLR-----K 306 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~---~lp~~~-~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~c~~l~-----~ 306 (351)
+++|+.|+|+.+..... .+...+ ...++|++|+|++| .++. ++..+...++|++|+|++|. +. .
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~ 202 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLEL 202 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHH
Confidence 45677888843322110 111111 24567888888888 4543 44445677888888888864 43 3
Q ss_pred cChhhhcCCCCCEEEecCCC
Q 048347 307 FPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 307 lP~~i~~L~~L~~L~l~~~~ 326 (351)
++..+.+.++|++|+++++.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCCcCeEECCCCC
Confidence 45667777888888888875
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.89 E-value=0.0031 Score=52.44 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999865
No 262
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.89 E-value=0.028 Score=53.35 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.3
Q ss_pred HHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++.+++... ..+.++|.++|.+|+||||+|..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666432 134689999999999999999888765
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.87 E-value=0.0041 Score=51.41 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.|.++|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999876
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.86 E-value=0.022 Score=51.27 Aligned_cols=38 Identities=13% Similarity=-0.009 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
..+++++|.+|+||||++..+... ....-..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 579999999999999999998766 32222234455444
No 265
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.85 E-value=0.0021 Score=59.86 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=62.1
Q ss_pred CCCCceEEEEecccccC---ceeeeCCCCCCcccEEEEecCCcccc-----ccccccccCCccEEeecCCcccc-----c
Q 048347 240 KLPHLKVLKLKRSSYSG---RKLVCGHGGFPRQEILHLKSMLWLEE-----WKMETGAMQKLKSLIVNPCAYLR-----K 306 (351)
Q Consensus 240 ~l~~L~~L~l~~~~~~~---~~lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~c~~l~-----~ 306 (351)
..++|+.|+|+.+.... ..++..+...++|++|+|++| .++. ++..+...++|+.|+|++|. +. .
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~ 230 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALA 230 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHH
Confidence 46789999995443211 224444567888999999999 4653 35556778899999999974 43 4
Q ss_pred cChhhhcCCCCCEEEecCCC
Q 048347 307 FPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 307 lP~~i~~L~~L~~L~l~~~~ 326 (351)
++..+...++|++|++++++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 55667788999999999876
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.83 E-value=0.0055 Score=50.84 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999876
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.82 E-value=0.0051 Score=51.50 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35689999999999999999999875
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.82 E-value=0.0048 Score=52.37 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999876
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.81 E-value=0.0097 Score=54.13 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|..|+||||||+.+..-
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998655
No 270
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.80 E-value=0.0039 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6889999999999999999876
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.80 E-value=0.0034 Score=52.82 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999776
No 272
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.78 E-value=0.025 Score=51.28 Aligned_cols=93 Identities=8% Similarity=0.075 Sum_probs=53.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccc---------CC-----CeeEEEEEe--CCHHHHHHHHHHHhCCCCC---
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKN---------YF-----DCCAWVYYQ--LSLDMMLDAIMKSLMPLSA--- 99 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~--~~~~~~~~~i~~~~~~~~~--- 99 (351)
+.-.++.|.|..|+||||||.+++....... .. ..++|++.. ++.+++.+ ++..++....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 3457899999999999999998875422211 11 356677666 55666553 4555543211
Q ss_pred --CccCCCCCHH---HHHHHHHHhcC--CceEEEEEeCCC
Q 048347 100 --LSEILDNDFE---MKKNTLHNYLK--NKRYLIVIQDVW 132 (351)
Q Consensus 100 --~~~~~~~~~~---~~~~~l~~~L~--~k~~LlVLDdv~ 132 (351)
..-....+.+ ++.+.+.+.++ .+--++|+|.+-
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0001122333 23444555554 345688889884
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.78 E-value=0.011 Score=54.97 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-..++|+|..|+|||||++.+.+.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHH
Confidence 358889999999999999998775
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.77 E-value=0.0052 Score=51.65 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999776
No 275
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.76 E-value=0.0055 Score=55.68 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+||+|.|-|||||||.|..+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 35899999999999999987766544
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.76 E-value=0.0042 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.74 E-value=0.016 Score=52.73 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
+..+++|+|.+|+||||++..+... ....-..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 4679999999999999999998776 33332234454444
No 278
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.74 E-value=0.0059 Score=51.46 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 279
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.72 E-value=0.016 Score=55.28 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=32.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCC-CeeEEEEEe---CCHHHHHHHHHH
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYF-DCCAWVYYQ---LSLDMMLDAIMK 92 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~---~~~~~~~~~i~~ 92 (351)
.++|+|..|+||||||+.+... ....+ +.++++-+. ....+++.++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 5889999999999999999887 33333 334454444 445566665543
No 280
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.70 E-value=0.0053 Score=50.88 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998765
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.69 E-value=0.012 Score=54.14 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=31.8
Q ss_pred ccchhhHHHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 21 LDLEDKMEELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 21 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
|+.++-.+++.+.+... ......|.|+|+.|+||||+|+.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44555666666666432 234567889999999999999988776
No 282
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.68 E-value=0.0095 Score=51.87 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 25 DKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 25 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....++.........+..+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444443333335678999999999999999999765
No 283
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.68 E-value=0.012 Score=54.31 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++.+.+.....+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 33445555444456789999999999999999998654
No 284
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.68 E-value=0.016 Score=53.53 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=50.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCC-ccCCCCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSAL-SEILDNDFEMKKNTLH 116 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~ 116 (351)
+-+++.|.|.+|+||||||.++... ....-..++|++.. ++.. .+..++..... .-.+..+.+++.+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 4468889999999999999998776 33232356787766 4432 24444432110 0012234555555555
Q ss_pred HhcC-CceEEEEEeCCC
Q 048347 117 NYLK-NKRYLIVIQDVW 132 (351)
Q Consensus 117 ~~L~-~k~~LlVLDdv~ 132 (351)
...+ .+--++|+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4432 344588889873
No 285
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.68 E-value=0.007 Score=50.83 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
No 286
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.67 E-value=0.053 Score=49.03 Aligned_cols=83 Identities=8% Similarity=0.080 Sum_probs=50.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccC--CCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCc-cCCCCCHHHH-HHHHH
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNY--FDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALS-EILDNDFEMK-KNTLH 116 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~-~~~l~ 116 (351)
++-|.|..|+||||||-++... .... =..++||+.. ++.. -+++++.+...- -....+.+++ .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888776 3332 2356787755 4442 366676543210 0123455555 33332
Q ss_pred Hh--c-CCceEEEEEeCCC
Q 048347 117 NY--L-KNKRYLIVIQDVW 132 (351)
Q Consensus 117 ~~--L-~~k~~LlVLDdv~ 132 (351)
.. + +++.-++|+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 3 4567899999884
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.67 E-value=0.0058 Score=51.40 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.66 E-value=0.0054 Score=50.88 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999775
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.66 E-value=0.0097 Score=57.56 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.++.++.+...+..+. -|-++|+.|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 568999999988888777653 4668999999999999999987
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.65 E-value=0.0059 Score=50.16 Aligned_cols=25 Identities=4% Similarity=0.111 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++++|.|..|+|||||+.++...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999876
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.65 E-value=0.0045 Score=52.14 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998653
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.65 E-value=0.0052 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.|.|+.|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999866
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.65 E-value=0.0063 Score=53.42 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|.|.|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999876
No 294
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.64 E-value=0.008 Score=62.20 Aligned_cols=46 Identities=7% Similarity=0.150 Sum_probs=36.4
Q ss_pred ccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.++.++.+...+... ......+.|+|+.|+|||++|+.+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999888888877532 112357889999999999999999876
No 295
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.62 E-value=0.0042 Score=53.52 Aligned_cols=110 Identities=12% Similarity=-0.062 Sum_probs=60.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhc
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYL 119 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 119 (351)
+-.++.|.|..|+||||++..+..+ ...+-..++.+....+.. ....|+++++.... ........++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~--~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLP--SVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSC--CEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch-HHHHHHHhcCCCcc--ccccCCHHHHHHHHHHHh
Confidence 3578888999999999999888877 333322333333333322 22334444432211 112234456677777666
Q ss_pred CCceE-EEEEeCCCCh--hhHHHHHhhcCCCCCCcEEEE-Ee
Q 048347 120 KNKRY-LIVIQDVWRG--DIWDFLKEALPDHQNGSRILT-AL 157 (351)
Q Consensus 120 ~~k~~-LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TR 157 (351)
.+.++ +|++|.+-.. +..+.+.... +. |..||+ -+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~-~~--gi~Vil~Gl 124 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILA-EN--GFVVIISGL 124 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHH-HT--TCEEEEECC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHH-hC--CCeEEEEec
Confidence 55544 8999998532 3333333222 21 556665 54
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.62 E-value=0.0033 Score=52.58 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|.|+|++|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45779999999999999999765
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.0076 Score=49.92 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+|.|.|+.|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999887
No 298
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.61 E-value=0.013 Score=49.85 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 24 EDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 24 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++..+.+...+.. .+..+|.|+|.+|+|||||+.++...
T Consensus 23 ~~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455555433 35788999999999999999998766
No 299
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.60 E-value=0.04 Score=49.91 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHh
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSL 94 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~ 94 (351)
.-.++.|.|.+|+||||||.++..+...++ ..++|++.-.+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHHH
Confidence 346888899999999999999876622222 45667665577777777776654
No 300
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.60 E-value=0.012 Score=50.04 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 20 DLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 20 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-+.++..+.+.+.+... +..+|+|+|.+|+|||||+.++...
T Consensus 11 l~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555666666665433 5789999999999999999998766
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.60 E-value=0.005 Score=51.98 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.|+|+.|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467889999999999999999776
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.60 E-value=0.0057 Score=50.90 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 303
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.59 E-value=0.0095 Score=55.35 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHHc----------------------------cCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIE----------------------------RQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.++-++.+...+.. ......-+.++|+.|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999988877721 0112345779999999999999999887
No 304
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.57 E-value=0.016 Score=52.12 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998876
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.56 E-value=0.0066 Score=51.89 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999765
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.56 E-value=0.0075 Score=54.72 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|..|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45689999999999999999998775
No 307
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.56 E-value=0.0068 Score=51.30 Aligned_cols=24 Identities=4% Similarity=0.043 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998654
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.55 E-value=0.0064 Score=52.91 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|+|+.|+|||||++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999844
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.54 E-value=0.0066 Score=50.32 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998765
No 310
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.54 E-value=0.0062 Score=55.70 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=33.4
Q ss_pred CCCccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 16 DNKVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 16 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.=++++|.+..++.+...+.... ..-+-++|..|+|||++|+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 33568999886665544443322 123778999999999999999876
No 311
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.52 E-value=0.0077 Score=53.00 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.50 E-value=0.0061 Score=49.57 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.50 E-value=0.0084 Score=52.19 Aligned_cols=25 Identities=4% Similarity=0.049 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+|+|.|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998764
No 314
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.49 E-value=0.043 Score=53.01 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.++|.|+|.+|+||||++.++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998854
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.47 E-value=0.015 Score=52.12 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....+|.|.|+.|+||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578889999999999999999765
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.46 E-value=0.0084 Score=49.49 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+|++.|+.|+||||+|+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999865
No 317
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.46 E-value=0.0089 Score=48.49 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.+++++|..|+|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998765
No 318
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.45 E-value=0.019 Score=54.92 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=37.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccc-cCCCeeEEEEEe---CCHHHHHHHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVK-NYFDCCAWVYYQ---LSLDMMLDAIMKS 93 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~---~~~~~~~~~i~~~ 93 (351)
..++|.|..|+|||+|+..+.+. +. .+-+.++++-+. -.+.++..++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~--~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHH--TTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHH--HHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 46888999999999999988776 32 334667777666 5667777777654
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.44 E-value=0.0079 Score=50.64 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368899999999999999999886
No 320
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.42 E-value=0.0061 Score=52.19 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998764
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.40 E-value=0.0063 Score=49.89 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|.|.|+.|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999876
No 322
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.38 E-value=0.0069 Score=50.51 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.35 E-value=0.0083 Score=50.56 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999998765
No 324
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.34 E-value=0.0086 Score=52.46 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+|+|.|+.|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999865
No 325
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.33 E-value=0.011 Score=49.68 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999775
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.33 E-value=0.0099 Score=49.14 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 327
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.32 E-value=0.016 Score=52.33 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=28.1
Q ss_pred hHHHHHHHHHccCC-CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 26 KMEELLDLLIERQP-QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 26 ~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+.+.+++....+ ...-+.++|..|+|||+||..+++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455566654221 2356779999999999999999987
No 328
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.31 E-value=0.0076 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999886
No 329
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.30 E-value=0.02 Score=51.68 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|..|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998775
No 330
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.29 E-value=0.0063 Score=49.53 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999876
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.28 E-value=0.0085 Score=48.54 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.26 E-value=0.0068 Score=50.02 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|.|.|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 333
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.26 E-value=0.011 Score=52.69 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHh
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAY 62 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~ 62 (351)
+..+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999998
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.24 E-value=0.0068 Score=49.84 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999999999765
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.24 E-value=0.009 Score=50.46 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999877
No 336
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.23 E-value=0.015 Score=55.41 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=36.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccc-ccCCCeeEEEEEe---CCHHHHHHHHHHH
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYV-KNYFDCCAWVYYQ---LSLDMMLDAIMKS 93 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~---~~~~~~~~~i~~~ 93 (351)
..++|.|..|+|||+|+..+.+. + +.+-+.++++-+. -.+.++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~--~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINN--VAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--TTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHh--hHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 57889999999999999998776 3 2233556665555 6667777777654
No 337
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.21 E-value=0.012 Score=48.32 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999875
No 338
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.19 E-value=0.01 Score=49.75 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.19 E-value=0.01 Score=50.92 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998765
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.18 E-value=0.011 Score=50.34 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999975
No 341
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.18 E-value=0.01 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.16 E-value=0.054 Score=49.54 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=41.6
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHh
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSL 94 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~ 94 (351)
...|-.++ .+=..-.++.|.|.+|+||||||..++.+ ....=..++|++.-.+..++...++...
T Consensus 33 ~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 33 FVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLEMSAEQLALRALSDL 97 (338)
T ss_dssp CHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESSSCHHHHHHHHHHHH
T ss_pred ChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 44444444 23233468888999999999999998877 3222234566554466777777765543
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.16 E-value=0.012 Score=49.35 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+|.|.|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999999876
No 344
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.15 E-value=0.01 Score=50.95 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999875
No 345
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.15 E-value=0.0094 Score=50.82 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999876
No 346
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.13 E-value=0.0052 Score=51.95 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999766
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.13 E-value=0.013 Score=49.83 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 348
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.12 E-value=0.019 Score=48.80 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998653
No 349
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.11 E-value=0.0084 Score=53.81 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+.+.++|+.|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457778999999999999999988
No 350
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.10 E-value=0.015 Score=48.31 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=27.0
Q ss_pred CcccEEEEecCCcccc-----ccccccccCCccEEee--cCCccccc-----cChhhhcCCCCCEEEecCCC
Q 048347 267 PRQEILHLKSMLWLEE-----WKMETGAMQKLKSLIV--NPCAYLRK-----FPEELWRIKALRKLESWWPR 326 (351)
Q Consensus 267 ~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l--~~c~~l~~-----lP~~i~~L~~L~~L~l~~~~ 326 (351)
++|++|+|++| .++. +...+...++|++|+| ++| .+.. +.+.+...++|++|+++++.
T Consensus 93 ~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 93 NTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 44555555555 3332 2333444455555555 432 2221 33334444555555555554
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.0072 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998766
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.09 E-value=0.0096 Score=50.21 Aligned_cols=24 Identities=0% Similarity=-0.212 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.07 E-value=0.011 Score=49.23 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999876
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.07 E-value=0.019 Score=50.14 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...+|.+.|+.|+||||+|+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999776
No 355
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.06 E-value=0.012 Score=51.33 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+. .+++|+|+.|+|||||.+.+.--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 79999999999999999998654
No 356
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.03 E-value=0.015 Score=49.26 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 357
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.02 E-value=0.0077 Score=51.83 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHh-CC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAY-NS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~-~~ 64 (351)
-.+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998 54
No 358
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.96 E-value=0.013 Score=50.79 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||.+.+.--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999654
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.96 E-value=0.0097 Score=50.83 Aligned_cols=24 Identities=8% Similarity=-0.176 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999876
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.95 E-value=0.013 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|++|+||||+++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999998754
No 361
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.94 E-value=0.013 Score=50.38 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999654
No 362
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.93 E-value=0.016 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 46788899999999999999999754
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.90 E-value=0.015 Score=49.80 Aligned_cols=26 Identities=4% Similarity=0.093 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+.++|.|.|++|+||+|.|+.+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999877
No 364
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.88 E-value=0.012 Score=55.79 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCccccchhhHHHHHHHHHcc------------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 17 NKVDLDLEDKMEELLDLLIER------------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 17 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.+++|.++-++.+...+... ....+-+.++|+.|+||||+|+.+...
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999888887776321 112344778999999999999999877
No 365
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.88 E-value=0.1 Score=50.40 Aligned_cols=54 Identities=6% Similarity=0.001 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
.-.++.|.|.+|+||||||.++..+ .... =..++|++...+..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEESVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccCCHHHHHHHHHHHHc
Confidence 3467888999999999999998776 3322 2345666555667777777665543
No 366
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.85 E-value=0.012 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6889999999999999998765
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.83 E-value=0.017 Score=52.11 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|..|+||||+++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998765
No 368
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.81 E-value=0.016 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+++|.|..|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999876
No 369
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.81 E-value=0.014 Score=49.53 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999766
No 370
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.77 E-value=0.046 Score=51.61 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+++|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998766
No 371
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.77 E-value=0.015 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||++.+.--
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998653
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.74 E-value=0.016 Score=51.17 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||.+.+.--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999654
No 373
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.73 E-value=0.057 Score=48.84 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=38.7
Q ss_pred CCCceEEEEecccccCceeeeC-CCCCCcccEEEEecCCcccccccc-ccccCCcc-EEeecCCccccccCh-hhhcCCC
Q 048347 241 LPHLKVLKLKRSSYSGRKLVCG-HGGFPRQEILHLKSMLWLEEWKME-TGAMQKLK-SLIVNPCAYLRKFPE-ELWRIKA 316 (351)
Q Consensus 241 l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~-~L~l~~c~~l~~lP~-~i~~L~~ 316 (351)
+++|+.++++ ...+..+|.. +.++.+|+.+++.++ +..++.. +..+.+|+ .+++.+ .+..+++ ...++++
T Consensus 225 ~~~L~~l~L~--~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDIS--KTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECT--TBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred cCCCeEEECC--CCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 4555555551 1123344442 445555666655553 5555543 45555565 555554 3444443 3345555
Q ss_pred CCEEEec
Q 048347 317 LRKLESW 323 (351)
Q Consensus 317 L~~L~l~ 323 (351)
|+.+++.
T Consensus 299 L~~l~l~ 305 (329)
T 3sb4_A 299 LRYVLAT 305 (329)
T ss_dssp EEEEEEC
T ss_pred CCEEEeC
Confidence 6555553
No 374
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.71 E-value=0.017 Score=50.20 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999776
No 375
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.71 E-value=0.071 Score=49.96 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccc----CCCeeEEEEEe--CCHHHHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKN----YFDCCAWVYYQ--LSLDMMLDAIMKSLMP 96 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~--~~~~~~~~~i~~~~~~ 96 (351)
.-.++.|.|..|+|||||+..++-...... .-..++|++.. +.... ++.+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCC
Confidence 346899999999999999997652211111 22346777655 44443 3446666554
No 376
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.71 E-value=0.013 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 377
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.69 E-value=0.017 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||.+.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999664
No 378
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.68 E-value=0.016 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999764
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.67 E-value=0.013 Score=49.98 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999876
No 380
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.66 E-value=0.017 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||.+.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.65 E-value=0.018 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|+|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999876
No 382
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.64 E-value=0.019 Score=49.99 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998653
No 383
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.63 E-value=0.018 Score=48.75 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999765
No 384
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.61 E-value=0.019 Score=48.15 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999775
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.60 E-value=0.036 Score=49.47 Aligned_cols=53 Identities=6% Similarity=0.102 Sum_probs=34.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCC-eeEEEEEeCCHHHHHHHHHHHh
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFD-CCAWVYYQLSLDMMLDAIMKSL 94 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~i~~~~ 94 (351)
.-.+++|.|..|+|||||++.+... ...... .++|++......++.+.+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEESVEETAEDLIGLH 87 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcCCHHHHHHHHHHHH
Confidence 3468999999999999999998877 332222 3455543344555555555544
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.60 E-value=0.018 Score=50.83 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||++.+.--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 368999999999999999998654
No 387
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.59 E-value=0.018 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999876
No 388
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.58 E-value=0.024 Score=51.79 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999987
No 389
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.57 E-value=0.033 Score=53.52 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|..|+|||||++.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998765
No 390
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.57 E-value=0.019 Score=50.26 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 391
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.55 E-value=0.093 Score=47.42 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=64.5
Q ss_pred CCCCCCCCceEEEEecccccCceeeeC-CCCCCccc-EEEEecCCcccccccc-ccccCCccEEeecCCccccccChh-h
Q 048347 236 PAPEKLPHLKVLKLKRSSYSGRKLVCG-HGGFPRQE-ILHLKSMLWLEEWKME-TGAMQKLKSLIVNPCAYLRKFPEE-L 311 (351)
Q Consensus 236 ~~l~~l~~L~~L~l~~~~~~~~~lp~~-~~~l~~L~-~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lP~~-i 311 (351)
..+..+++|+.+.+. +. +..++.. +.++.+|+ .+.+.. .+..++.. +..+.+|+.+++.+ ..+..++.. +
T Consensus 244 ~aF~~~~~L~~l~l~-~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF 317 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLP-HN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELF 317 (329)
T ss_dssp TTTTTCTTCCEEECC-TT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTT
T ss_pred hhhhCCCCCCEEECC-cc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhh
Confidence 346788999999994 32 6677654 77888999 999987 58888754 88999999999987 578888874 5
Q ss_pred hcCCCCCEEEe
Q 048347 312 WRIKALRKLES 322 (351)
Q Consensus 312 ~~L~~L~~L~l 322 (351)
.++++|+.++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 68899998864
No 392
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.55 E-value=0.019 Score=50.16 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||++.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999665
No 393
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.55 E-value=0.027 Score=47.64 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 27 MEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 27 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+..++..- ++..-+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555432 23345789999999999999888776
No 394
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.54 E-value=0.016 Score=49.53 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999765
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.53 E-value=0.043 Score=54.37 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++|.+.-++.+...+..+ ..+.|+|+.|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 34789888888877777654 37889999999999999999887
No 396
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.53 E-value=0.035 Score=51.64 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.-.+++|+|+.|+|||||++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44579999999999999999999864
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.52 E-value=0.019 Score=52.19 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++.+++|.|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999855
No 398
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.52 E-value=0.019 Score=50.42 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||.+.++--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
No 399
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.51 E-value=0.019 Score=50.73 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 400
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.50 E-value=0.017 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++-.+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998765
No 401
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.48 E-value=0.016 Score=53.72 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCCCCceEEEEecccccCceeeeCCCCCCcccEEEEecCCccc-ccccccc--ccCCccEEeecCCcc-------ccccC
Q 048347 239 EKLPHLKVLKLKRSSYSGRKLVCGHGGFPRQEILHLKSMLWLE-EWKMETG--AMQKLKSLIVNPCAY-------LRKFP 308 (351)
Q Consensus 239 ~~l~~L~~L~l~~~~~~~~~lp~~~~~l~~L~~L~L~~~~~l~-~lp~~i~--~L~~L~~L~l~~c~~-------l~~lP 308 (351)
..+|+|+.|.++ ++... .++. + .+++|+.|+|..|. +. +-...++ .+++|+.|+|..+.. +..+-
T Consensus 169 ~~~P~L~~L~L~-g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIK-GTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEE-CCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEe-CCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 567999999994 43222 3443 3 37899999999874 43 2222333 789999999863211 22222
Q ss_pred hhh--hcCCCCCEEEecCCC
Q 048347 309 EEL--WRIKALRKLESWWPR 326 (351)
Q Consensus 309 ~~i--~~L~~L~~L~l~~~~ 326 (351)
..+ +.+++|++|+++++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT
T ss_pred HHHhcCCCCCcCEEeCCCCC
Confidence 222 357899999998876
No 402
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.48 E-value=0.03 Score=57.08 Aligned_cols=47 Identities=6% Similarity=0.119 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHHccC-------CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIERQ-------PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.++.++.+...+.... .....+-++|+.|+|||++|+.+++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999988888886421 22346889999999999999999887
No 403
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.48 E-value=0.029 Score=45.19 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999875
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.47 E-value=0.043 Score=50.26 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 30 LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 30 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..-+.....+..+|+|+|.+|+|||||+..+...
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 33333333356789999999999999999998643
No 405
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.46 E-value=0.023 Score=45.15 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..|.|+|.+|+|||||++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999766
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.45 E-value=0.021 Score=50.34 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999765
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.43 E-value=0.0099 Score=53.31 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=19.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999775
No 408
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.40 E-value=0.021 Score=50.58 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
No 409
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.39 E-value=0.022 Score=49.89 Aligned_cols=23 Identities=4% Similarity=0.276 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999765
No 410
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.38 E-value=0.022 Score=50.38 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||.+.++--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998764
No 411
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.38 E-value=0.018 Score=54.62 Aligned_cols=88 Identities=7% Similarity=0.105 Sum_probs=50.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCC----eeEEEEEe---CCHHHHHHHHHHHhCCCCC--CccCCCCCHH-HH-
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFD----CCAWVYYQ---LSLDMMLDAIMKSLMPLSA--LSEILDNDFE-MK- 111 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~---~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~-~~- 111 (351)
.++|.|..|+|||+|+.++.+.. ..+-+ .++++-+. -.+.++..++...=..+.. .....+.+.. ..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 46788999999999999998873 33222 34455555 6666777776543100000 0000111111 11
Q ss_pred ----HHHHHHhcC---CceEEEEEeCCC
Q 048347 112 ----KNTLHNYLK---NKRYLIVIQDVW 132 (351)
Q Consensus 112 ----~~~l~~~L~---~k~~LlVLDdv~ 132 (351)
.-.+.++++ ++..|+++||+-
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 123344443 789999999994
No 412
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.38 E-value=0.032 Score=45.69 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++...|+|+|.+|+|||||.+++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999876
No 413
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.33 E-value=0.036 Score=47.67 Aligned_cols=47 Identities=11% Similarity=-0.035 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHH
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDA 89 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 89 (351)
-.++.|.|..|+||||||.++... ....=..++|++......++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEHPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCCHHHHHHH
Confidence 468899999999999999888655 22222345666544444444443
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.33 E-value=0.025 Score=52.23 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+++|+|..|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3579999999999999999998765
No 415
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.33 E-value=0.022 Score=50.70 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999764
No 416
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.32 E-value=0.022 Score=49.92 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999765
No 417
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.32 E-value=0.025 Score=50.78 Aligned_cols=51 Identities=8% Similarity=-0.055 Sum_probs=27.5
Q ss_pred HHHHHHHHcc--CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 28 EELLDLLIER--QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 28 ~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
..+...+... ..+.++|+|+|-||+||||+|..+... ....=..++-|...
T Consensus 26 ~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D 78 (307)
T 3end_A 26 GSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 78 (307)
T ss_dssp --------------CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred chhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 3444444333 246789999999999999999887665 32222234445544
No 418
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.31 E-value=0.032 Score=45.72 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|+|+|..|+|||||.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999875
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.30 E-value=0.021 Score=48.40 Aligned_cols=22 Identities=0% Similarity=-0.112 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 420
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.28 E-value=0.026 Score=46.77 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999999765
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.28 E-value=0.022 Score=49.06 Aligned_cols=24 Identities=4% Similarity=-0.038 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999877
No 422
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.27 E-value=0.016 Score=48.12 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=60.6
Q ss_pred CCCCCCceEEEEeccc-ccC----ceeeeCCCCCCcccEEEEecCCcccc-----ccccccccCCccEEeecCCccccc-
Q 048347 238 PEKLPHLKVLKLKRSS-YSG----RKLVCGHGGFPRQEILHLKSMLWLEE-----WKMETGAMQKLKSLIVNPCAYLRK- 306 (351)
Q Consensus 238 l~~l~~L~~L~l~~~~-~~~----~~lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~c~~l~~- 306 (351)
+...+.|+.|+|+ ++ ... ..+...+...++|++|+|++| .++. +...+...++|++|+|++| .+..
T Consensus 32 l~~~~~L~~L~L~-~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLN-NIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HTTCTTCCEEECT-TCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HhcCCCCCEEEec-CCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 3467899999994 43 222 123444566788999999999 4543 3334555689999999986 3443
Q ss_pred ----cChhhhcCCCCCEEEe--cCCC
Q 048347 307 ----FPEELWRIKALRKLES--WWPR 326 (351)
Q Consensus 307 ----lP~~i~~L~~L~~L~l--~~~~ 326 (351)
+...+.+.++|++|++ ++..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC
Confidence 5667788899999999 5544
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.25 E-value=0.022 Score=48.80 Aligned_cols=22 Identities=9% Similarity=-0.015 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999876
No 424
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.24 E-value=0.18 Score=47.79 Aligned_cols=55 Identities=15% Similarity=-0.060 Sum_probs=38.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccC-CCeeEEEEEeCCHHHHHHHHHHHhC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNY-FDCCAWVYYQLSLDMMLDAIMKSLM 95 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~i~~~~~ 95 (351)
++-.++.|.|.+|+||||||..++.. +... =..++|++...+..++...++....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECCCCHHHHHHHHHHHHc
Confidence 34468889999999999999998877 3321 2245666554667777777665443
No 425
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.23 E-value=0.024 Score=46.55 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999875
No 426
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.23 E-value=0.026 Score=48.69 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+..+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999875
No 427
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.025 Score=48.92 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|.|.|+.|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367899999999999999999876
No 428
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.20 E-value=0.026 Score=48.86 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 429
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.19 E-value=0.45 Score=40.66 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=47.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC-cccccCCCeeEEEEEe---CCHHHHHHHHHHHhCCCCCC----------------c
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS-SYVKNYFDCCAWVYYQ---LSLDMMLDAIMKSLMPLSAL----------------S 101 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~---~~~~~~~~~i~~~~~~~~~~----------------~ 101 (351)
+.+.|.|..|+||||+.....-+ ...........-+... ....++.+.+...+...... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 57889999999999866554322 1111122222222222 23334445555444332110 0
Q ss_pred cCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 102 EILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 102 ~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
.+-..+.+.+...+...+.+-+ ++|+|+++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 1222455666666766565544 678999976
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.14 E-value=0.026 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368899999999999999999876
No 431
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.13 E-value=0.029 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.10 E-value=0.028 Score=50.20 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999873
No 433
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.06 E-value=0.053 Score=49.61 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhC
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 63 (351)
.+.+.+...-.+..+++|+|..|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444443334678999999999999999999874
No 434
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.04 E-value=0.12 Score=49.36 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=35.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHH
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIM 91 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~ 91 (351)
+-.++.|.|.+|+||||||..+....... .-..++|++...+..++...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHHHHH
Confidence 34688899999999999999988773221 1224666665555566666654
No 435
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.045 Score=45.06 Aligned_cols=25 Identities=8% Similarity=0.036 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999999876
No 436
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.03 E-value=0.028 Score=49.81 Aligned_cols=22 Identities=9% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 437
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.03 E-value=0.072 Score=46.67 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
++.+.+.....+...|+|+|..|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444444456778899999999999999998763
No 438
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.02 E-value=0.025 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....+|.|+|+.|+||||+|+.+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999876
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.02 E-value=0.03 Score=50.84 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999876
No 440
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.00 E-value=0.035 Score=48.90 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.+++|+|+.|+|||||++.+..-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3479999999999999999998765
No 441
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.98 E-value=0.025 Score=52.52 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 29 ELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 29 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
++++.+..=. +-..++|+|..|+|||+|+..+.+.
T Consensus 164 raID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 164 RLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhhccccc-CCceEEEecCCCCChhHHHHHHHHH
Confidence 4555554322 2347789999999999999998886
No 442
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.97 E-value=0.033 Score=46.35 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999765
No 443
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.96 E-value=0.047 Score=44.11 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|+|+|..|+|||||..++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999765
No 444
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.95 E-value=0.032 Score=48.90 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=25.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ 80 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 80 (351)
++|+|.|-||+||||+|..+... ....=..++-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCC
Confidence 67888999999999999888766 33222234555554
No 445
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.92 E-value=0.048 Score=55.61 Aligned_cols=99 Identities=10% Similarity=0.032 Sum_probs=60.6
Q ss_pred cCCCCCccccchhhHHHHHHHHHcc-----------CCCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeC
Q 048347 13 LSWDNKVDLDLEDKMEELLDLLIER-----------QPQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQL 81 (351)
Q Consensus 13 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 81 (351)
+.+.-.++.|.++.+++|.+.+... -...+-+-++|+.|.|||.+|+++++. .... ++.++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~- 543 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK- 543 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECC-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEec-
Confidence 3444456778888888887776431 012234668999999999999999998 3222 23332
Q ss_pred CHHHHHHHHHHHhCCCCCCccCCCCCHHHHHHHHHHhcCCceEEEEEeCCCC
Q 048347 82 SLDMMLDAIMKSLMPLSALSEILDNDFEMKKNTLHNYLKNKRYLIVIQDVWR 133 (351)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~ 133 (351)
..++ +..- -..++..+.+.+...-+...+.|++|+++.
T Consensus 544 -~~~l----~s~~---------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 544 -GPEL----LTMW---------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -HHHH----HTTT---------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -cchh----hccc---------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1121 1111 112344455555555566789999999963
No 446
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.90 E-value=0.061 Score=54.74 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHHcc-------CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 18 KVDLDLEDKMEELLDLLIER-------QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 18 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.++.++.+...+... ......+-++|+.|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999888888777532 122346889999999999999999887
No 447
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.89 E-value=0.028 Score=44.59 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|.++|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4779999999999999999765
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.88 E-value=0.021 Score=50.11 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+...|.|.|+.|+||||+|+.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999998877
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.031 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|..|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999754
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.88 E-value=0.026 Score=50.97 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 368999999999999999998654
No 451
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.87 E-value=0.045 Score=53.54 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=34.4
Q ss_pred ccccchhhHHHHHHHHHcc----CCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 19 VDLDLEDKMEELLDLLIER----QPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 19 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+++|.++-.+.+.+.+.-. .-+...+.++|+.|+||||||+.++..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4788877777775544321 123568899999999999999999887
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.86 E-value=0.081 Score=46.55 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 28 EELLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 28 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
.++.+.+...+.+...|.++|..|+|||||...++...
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444344444446678899999999999999998763
No 453
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.81 E-value=0.04 Score=43.94 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.|.|+|.+|+|||||.+.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456779999999999999998765
No 454
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.79 E-value=0.037 Score=49.22 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 478888999999999999888766
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.78 E-value=0.053 Score=48.83 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.-.+++|+|+.|+|||||++.+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34568999999999999999998654
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.76 E-value=0.037 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+-.+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999887
No 457
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.75 E-value=0.044 Score=44.30 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
+..-.|+|+|..|+|||||...+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998763
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.74 E-value=0.034 Score=49.24 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.++.|+|..|+||||||..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998754
No 459
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.68 E-value=0.032 Score=45.85 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46779999999999999999765
No 460
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.67 E-value=0.036 Score=52.54 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..+|.|+|.+|+||||+|..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988765
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.67 E-value=0.043 Score=46.40 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCCCe
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDC 73 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 73 (351)
+.|+|-|+.|+||||+++.+.+. ....++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCE
Confidence 57889999999999999999887 4444443
No 462
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.63 E-value=0.042 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|+|+|..|+|||||..++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999876
No 463
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.63 E-value=0.036 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|..|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999776
No 464
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.62 E-value=0.056 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.--|+|+|..|+|||||.+++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456789999999999999999776
No 465
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.56 E-value=0.04 Score=43.98 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4678999999999999999765
No 466
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.043 Score=43.86 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
--|.|+|.+|+|||||.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45779999999999999999875
No 467
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.48 E-value=0.039 Score=50.97 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||.+.+.--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 368999999999999999998653
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.45 E-value=0.044 Score=49.36 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..++|.|.|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3468899999999999999999866
No 469
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.43 E-value=0.044 Score=44.91 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYN 63 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~ 63 (351)
+.+|+|..|+|||||+++++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999854
No 470
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.43 E-value=0.044 Score=50.62 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...++|+|..|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988654
No 471
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.43 E-value=0.038 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..-|+|+|..|+|||||.+.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999765
No 472
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.38 E-value=0.046 Score=44.82 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCc
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNSS 65 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 65 (351)
....|.|+|..|+|||||..++....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34567899999999999999998763
No 473
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.38 E-value=0.056 Score=43.64 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+...|+|+|..|+|||||.+++...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999998766
No 474
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.37 E-value=0.046 Score=44.43 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..|+|+|..|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999875
No 475
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.37 E-value=0.042 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-.+++|+|+.|+|||||.+.+.--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999998653
No 476
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.32 E-value=0.064 Score=42.85 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
--|+|+|..|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999998654
No 477
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.31 E-value=0.04 Score=52.48 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=50.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccccCC--CeeEEEEEe---CCHHHHHHHHHHHhCCCCC--CccCCCCCHHH----
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNSSYVKNYF--DCCAWVYYQ---LSLDMMLDAIMKSLMPLSA--LSEILDNDFEM---- 110 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~---~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~---- 110 (351)
..++|.|..|+|||+|+.++.......+.- +.++++-+. -.+.++..++...=..+.. .....+.+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 356778999999999999998874432211 245555555 6667777777643111100 00001111111
Q ss_pred --HHHHHHHhcC---CceEEEEEeCC
Q 048347 111 --KKNTLHNYLK---NKRYLIVIQDV 131 (351)
Q Consensus 111 --~~~~l~~~L~---~k~~LlVLDdv 131 (351)
..-.+.++++ ++..|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1223344443 69999999997
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.29 E-value=0.042 Score=46.54 Aligned_cols=86 Identities=7% Similarity=0.034 Sum_probs=47.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEeCCHHHHHHHHHHHhCCCCC-----CccCCCCCHHHHHHHHHH
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQLSLDMMLDAIMKSLMPLSA-----LSEILDNDFEMKKNTLHN 117 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~l~~ 117 (351)
+|.|.|++|+||+|.|+.+..+..+ ..++ .-+++++-+..-+.-.. ..+-..-+.+-..+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~-------~~is----tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~ 70 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF-------VHIS----TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEE 70 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-------EEEE----HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-------eEEc----HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHH
Confidence 5778999999999999999877221 2222 23444332221100000 000122344556777788
Q ss_pred hcCCceEEEEEeCCCCh-hhHHHH
Q 048347 118 YLKNKRYLIVIQDVWRG-DIWDFL 140 (351)
Q Consensus 118 ~L~~k~~LlVLDdv~~~-~~~~~l 140 (351)
.+..... +|||+.=.. .+.+.+
T Consensus 71 ~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 71 VFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HCCSSSC-EEEESCCCSHHHHHHH
T ss_pred hhccCCc-eEecCCchhHHHHHHH
Confidence 8866554 678988433 343433
No 479
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.29 E-value=0.073 Score=46.88 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 30 LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 30 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+..|+....++..-+.++|++|.|||++|..+.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44444443233445789999999999999999875
No 480
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.28 E-value=0.042 Score=43.75 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
--|+|+|..|+|||||.+++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35779999999999999999765
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.27 E-value=0.054 Score=45.54 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.|.|.|..|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999877
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.26 E-value=0.042 Score=43.98 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-.|.|+|..|+|||||.+++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998765
No 483
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.22 E-value=0.054 Score=44.29 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
..-.|.|+|.+|+|||||++++...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456779999999999999998765
No 484
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.19 E-value=0.05 Score=44.48 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4678999999999999999876
No 485
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.19 E-value=0.044 Score=43.75 Aligned_cols=22 Identities=0% Similarity=0.141 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 048347 43 LVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 43 vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
-|.|+|..|+|||||..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4778999999999999998765
No 486
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.18 E-value=0.055 Score=45.05 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHHHccCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 30 LLDLLIERQPQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 30 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.+.+.-.. +...|+|+|.+|+|||||.+++...
T Consensus 15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 444443322 2345789999999999999999765
No 487
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.17 E-value=0.056 Score=43.68 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|.|+|..|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998765
No 488
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.15 E-value=0.044 Score=43.79 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 048347 41 LSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 41 ~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.--|.|+|..|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998766
No 489
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.15 E-value=0.048 Score=45.93 Aligned_cols=25 Identities=8% Similarity=0.036 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+...|.|+|.+|+|||||+.++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999876
No 490
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.09 E-value=0.046 Score=43.41 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
--|+|+|..|+|||||..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998755
No 491
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.07 E-value=0.074 Score=47.80 Aligned_cols=22 Identities=5% Similarity=0.214 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++++|+.|+|||||.+.+. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 588999999999999999998 6
No 492
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.05 E-value=0.067 Score=49.17 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.-.++.|+|..|+|||||+..++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45589999999999999999998765
No 493
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.05 E-value=0.058 Score=44.84 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
....|+|+|..|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999998765
No 494
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.05 E-value=0.051 Score=50.08 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 048347 42 SLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 42 ~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+++|+|+.|+|||||.+.+.--
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998653
No 495
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.04 E-value=0.037 Score=46.31 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998765
No 496
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.03 E-value=0.061 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
...+|+|+|..|+|||||.+.+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999998753
No 497
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.96 E-value=0.063 Score=46.16 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=20.6
Q ss_pred CeEEEEEEcC-CCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDT-MGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~-gGiGKTtLa~~v~~~ 64 (351)
..++|+|++. ||+||||+|..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 4678888855 999999999888665
No 498
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.94 E-value=0.098 Score=58.29 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=53.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCcccccCCCeeEEEEEe--CCHHHHHHHHHHHhCCCCCCcc-CCCCCHHHHHHHH
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNSSYVKNYFDCCAWVYYQ--LSLDMMLDAIMKSLMPLSALSE-ILDNDFEMKKNTL 115 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~l 115 (351)
++-+.+-|+|+.|+|||+||.++... ...+=..++|+++. ++... ++.++.+...-. ....+.+++.+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 34578889999999999999999776 33333345676655 33333 445543211000 1233445666666
Q ss_pred HHhcC-CceEEEEEeCCC
Q 048347 116 HNYLK-NKRYLIVIQDVW 132 (351)
Q Consensus 116 ~~~L~-~k~~LlVLDdv~ 132 (351)
+...+ .+..+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 65543 456799999994
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.94 E-value=0.076 Score=45.24 Aligned_cols=26 Identities=8% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 39 PQLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 39 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
.+...|.|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999876
No 500
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.94 E-value=0.048 Score=44.84 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 048347 40 QLSLVAIIDTMGFDRTAFIGEAYNS 64 (351)
Q Consensus 40 ~~~vv~I~G~gGiGKTtLa~~v~~~ 64 (351)
+.--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456779999999999999887665
Done!