BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048349
         (94 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q948T9|RBOHB_SOLTU Respiratory burst oxidase homolog protein B OS=Solanum tuberosum
          GN=RBOHB PE=1 SV=1
          Length = 867

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 7  IEQPLENDKSRSKALKIVGGM-PGVESVAFKGDDRSQIEVTGDGMDAIVLFMSLRKKLRY 65
          IE   ++D  R   +   G +  G +S  FK DD S +E+T D  D  V   +++     
Sbjct: 3  IENTRDSDSMRGSRVGFSGSLVSGKKSARFK-DDESYVEITLDVRDDSVSVQNIKGADHE 61

Query: 66 ATFIASKLRRKVFLSDRSLVSHHVYHI 92
          A  +AS+L ++   +  S +S H+  +
Sbjct: 62 AALLASRLEKRPNNTLGSQLSFHLRQV 88


>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum
            demissum GN=R1B-14 PE=3 SV=1
          Length = 1317

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 13   NDKSRSKALKIVGGMPGVESVAFKGDDRSQIEVTG--DGMDAIVLFMSLRKK 62
            +DK R +  K +  +PGV+SV F  D++ ++ VTG  D  +  ++   LRK+
Sbjct: 1264 HDKGRLETFKKLVPLPGVKSVRFDMDEK-KVTVTGVMDANEVQLVVSKLRKR 1314


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,319,670
Number of Sequences: 539616
Number of extensions: 1104575
Number of successful extensions: 2384
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2383
Number of HSP's gapped (non-prelim): 5
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)