BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048351
(850 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 209 bits (531), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 203/660 (30%), Positives = 301/660 (45%), Gaps = 87/660 (13%)
Query: 147 LSKLEYLDLFAASFSGPIPP---LLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
L+ LE LDL A S SG L L++L++ NK+ +G++D +S+ +L +LD
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD-VSRCVNLEFLD 206
Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
+SS N S +L + + +L+ +L R+ S + L+ L +S N
Sbjct: 207 VSSNNFSTGIPFLGDCSALQ-----HLDISGNKLSGDFSRAIS---TCTELKLLNISSNQ 258
Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK-LEGLSLRGNSL 322
I P P+ SL+ L+L++N+ GEIP F L GL L GN
Sbjct: 259 FVGPIPPL------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 323 EGVISEHF------------FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
G + F +NFS G L + VLD+S S +P+
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFS----GELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430
++ S L L+ S N +G I N + P +L + L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGP-----------------ILPNLCQNPKNTLQE----LYL 401
Query: 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
N F+G I S + LV L LS N LSG +P + LR L L N G+IP
Sbjct: 402 QNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
Y++ + TL L N+ +GE+PS L N T+L ++L N ++G IP WIG L NL +L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAIL 519
Query: 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP--------KCFNNFTA-------- 594
L +N F G IP +L + LDL+ N +G IP K NF A
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 595 ---MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651
M +E + + F + L +I + G + G + +D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS 711
S N L G +P+EI + L LNL N+++G I ++G L+ L+ LDLS N+ G IP +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPA 771
+S + L+ +DLS+NNLSG IP Q ++F + + NP LCG PLP +C D +A G A
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNADGYA 757
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 203/660 (30%), Positives = 301/660 (45%), Gaps = 87/660 (13%)
Query: 147 LSKLEYLDLFAASFSGPIPP---LLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
L+ LE LDL A S SG L L++L++ NK+ +G++D +S+ +L +LD
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD-VSRCVNLEFLD 203
Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
+SS N S +L + + +L+ +L R+ S + L+ L +S N
Sbjct: 204 VSSNNFSTGIPFLGDCSALQ-----HLDISGNKLSGDFSRAIS---TCTELKLLNISSNQ 255
Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK-LEGLSLRGNSL 322
I P P+ SL+ L+L++N+ GEIP F L GL L GN
Sbjct: 256 FVGPIPPL------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 323 EGVISEHF------------FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
G + F +NFS G L + VLD+S S +P+
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFS----GELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430
++ S L L+ S N +G I N + P +L + L
Sbjct: 360 LTNLSASLLTLDLSSNNFSG-----------------PILPNLCQNPKNTLQE----LYL 398
Query: 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
N F+G I S + LV L LS N LSG +P + LR L L N G+IP
Sbjct: 399 QNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
Y++ + TL L N+ +GE+PS L N T+L ++L N ++G IP WIG L NL +L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAIL 516
Query: 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP--------KCFNNFTA-------- 594
L +N F G IP +L + LDL+ N +G IP K NF A
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 595 ---MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651
M +E + + F + L +I + G + G + +D+
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS 711
S N L G +P+EI + L LNL N+++G I ++G L+ L+ LDLS N+ G IP +
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPA 771
+S + L+ +DLS+NNLSG IP Q ++F + + NP LCG PLP +C D +A G A
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNADGYA 754
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 37/258 (14%)
Query: 506 NNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQL 565
NN G +P + T L + + ++SG IP ++ + + LV LD N G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSI 145
Query: 566 CHLADIQILDLSLNNISGNIPKCFNNF----TAMTQERSYNSSAITFSYAVPSRTTMLPV 621
L ++ + N ISG IP + +F T+MT R+ + I ++A +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------L 197
Query: 622 HIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681
++ F VDLS N L G+ ++L++N+L
Sbjct: 198 NLAF-----------------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL- 233
Query: 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSF 741
+ K+G ++L+ LDL N+ G +P L+Q+ L +++S NNL G+IP G LQ F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 742 NASVYDGNPELCGLPLPS 759
+ S Y N LCG PLP+
Sbjct: 294 DVSAYANNKCLCGSPLPA 311
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 31/261 (11%)
Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
N +Y+ +NL+ G +P + L L + + N SG IP+ ++ ++TL +N
Sbjct: 79 NFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL 568
SG LP + + +L + + N ISG IP G + + NR GKIP +L
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628
++ +DLS N + G+ F + TQ+ +++ F
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDL------------------ 237
Query: 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688
G KN GL DL +N++ G +P+ + L L LN+S NNL G I P+
Sbjct: 238 -----GKVGLSKNLNGL----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQG 287
Query: 689 GQLQSLDFLDLSRNQFSGGIP 709
G LQ D + N+ G P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP 308
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 33/239 (13%)
Query: 275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNF 334
V IP A + L L ++ + G IP F + L L N+L G +
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-------- 141
Query: 335 SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPN 394
P + + + + IS +IPD + S + S N++TG+ P
Sbjct: 142 ---------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 395 YISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFS---GPISFLCSFSGQ 448
+++ + +D+S N LEG + L N I L+KN + G + +
Sbjct: 193 TFANLNLAF---VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-----SK 244
Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
NL LDL +N + G LP Q L LN++ NN G+IP G LQ+ +S + NN
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANN 301
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 134/364 (36%), Gaps = 86/364 (23%)
Query: 35 CIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN--WRGVRCSN--QTGHVKVLDLH 90
C ++++ALL+ K+ L + LSSW DCCN W GV C QT V LDL
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 91 GTGRVKVLDIQTRVMSGNASLRGTLNPAXXXXXXXXXXXXSFNNFSGSQIPMFIGSLSKL 150
G K I + + + NN G IP I L++L
Sbjct: 59 GLNLPKPYPIPSSLAN--------------LPYLNFLYIGGINNLVGP-IPPAIAKLTQL 103
Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNL 209
YL + + SG IP L + L L YN L +G L IS L +L + +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRI 161
Query: 210 SKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY 269
S + P + SFS L +S + +S N LT I
Sbjct: 162 SGAI-------------------------PDSYGSFSKLFTS-----MTISRNRLTGKIP 191
Query: 270 PWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEH 329
P N ++L + LS N L+G+ F + + + L NSL
Sbjct: 192 PTFAN-----------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA------ 234
Query: 330 FFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT 389
F K+G K+ + LD+ + I ++P + L LN S N +
Sbjct: 235 ----FDLGKVG--------LSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLC 281
Query: 390 GRFP 393
G P
Sbjct: 282 GEIP 285
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 113/277 (40%), Gaps = 44/277 (15%)
Query: 285 MISLRTLTLSDNELDGEI--PKFFQNMFKLEGLSLRGNSLEGVISEHFFSN---FSYLKM 339
+ +L LTL+ LDG + FF+ + LE L LR N+++ + FF N F L +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 340 GPHFPKWLQTQ-------KHFSVLDISSAGISDSIPDW---------FSDTSHKLADL-- 381
+ K + + KHF++L +SS + D W F +TS DL
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 382 NFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF 441
N M RF + I+ I + +S+++ G S F P +F
Sbjct: 222 NGFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSS-----------FGHTNFKDPDNF 267
Query: 442 LCSFSG---QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM 498
+F G + DLS + + L + F L L LA N + N+ L +
Sbjct: 268 --TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 499 LTLSLHHNNFSGELPS-LLKNFTHLRVVALEENSISG 534
L L+L NF G + S + +N L V+ L N I
Sbjct: 326 LKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 141/356 (39%), Gaps = 64/356 (17%)
Query: 419 PSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLR-- 475
P LP++ Y+DLS N + SFS Q+L +L + + P ++ N R
Sbjct: 26 PELPAHVNYVDLSLNSIAELNE--TSFSRLQDLQFLKVEQ-----QTPGLVIRNNTFRGL 78
Query: 476 ----ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS--LLKNFTHLRVVALEE 529
IL L N F + L + L+L N G + S K T L ++ L +
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 530 NSISGNIPAWIGESLLNLVVLDLRSNR-----------FYGKIPFQLCHLADIQILDLSL 578
N+I PA ++ VLDL N+ F GK F L L+ I + D+
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK-HFTLLRLSSITLQDM-- 195
Query: 579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW------ 632
N KC N F T + + S F ++ R FFD + T
Sbjct: 196 NEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKR--------FFDAIAGTKIQSLIL 246
Query: 633 -----KGSEYEYKNTL--------GL----VKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
GS + + N GL VK+ DLS +K+ + L L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 676 SRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL-SQVNRLSVMDLSHNNLSG 730
++N + L L L+LS+N F G I S + +++L V+DLS+N++
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 134/575 (23%), Positives = 234/575 (40%), Gaps = 109/575 (18%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
IP L N + ++L +N L N + S+L +L +LDL+ C + +W+ E D
Sbjct: 24 IPDTLPNTT--EFLEFSFNFLPTIHNRTF-SRLMNLTFLDLTRCQI----NWIHE-DTFQ 75
Query: 224 S---LKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT-------------AS 267
S L TL L P I + + LN SL+ L L ++ S
Sbjct: 76 SHHQLSTLVLTG-----NPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLES 130
Query: 268 IYPWLFNVSSIPDAPG-PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSL--RGNSLEG 324
+Y ++SSI P +L+ L +N + + +++ + LSL GN+++G
Sbjct: 131 LYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKG 190
Query: 325 VISEHFFSN-FSYLKMG--PHFPK-------------WLQTQKHFSVLDISSA---GISD 365
+ F S F L G P+ WL T + DISSA G+ +
Sbjct: 191 IELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCE 250
Query: 366 SIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNA 425
+ + H+ +D++ + Q + +D+++ HL+G LPS
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQE------------LDLTATHLKG----LPSGM 294
Query: 426 FYIDLSKNKFSGPISF--LCSFSGQN---LVYLDLSSNLLSGKL-PDCWLQFNMLRILNL 479
++L K F LC S N L +L + N+ L C + L+ L+L
Sbjct: 295 KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDL 354
Query: 480 ANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW 539
++N+ + C LQ LKN +HL+ + L N G + +
Sbjct: 355 SHNDIEA---SDCCSLQ-------------------LKNLSHLQTLNLSHNEPLG-LQSQ 391
Query: 540 IGESLLNLVVLDLRSNRFY---GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT 596
+ L +LDL R + + PFQ H +Q+L+L+ + + +
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHF--LQVLNLTYCFLDTSNQHLLAGLPVL- 448
Query: 597 QERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKG---SEYEYKNTLGLVKSVDLSS 653
R N F ++T +L ++++L+ G + + ++LG + VDLS
Sbjct: 449 --RHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSH 506
Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688
N L + + + L G I LNL+ N++ I+P++
Sbjct: 507 NSLTCDSIDSLSHLKG-IYLNLAANSI-NIISPRL 539
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 130/337 (38%), Gaps = 90/337 (26%)
Query: 148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC 207
++L+ LDL A G +P + L+ L+ L L N + D + Q+ + +
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVN------HFDQLCQISAANF------ 321
Query: 208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
PSL LY+ +L H L +L+TL LS+N++ AS
Sbjct: 322 ---------------PSLTHLYIRGNVKKL----HLGVGCLEKLGNLQTLDLSHNDIEAS 362
Query: 268 --IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV 325
L N+S L+TL LS NE G + F+ +LE L L L
Sbjct: 363 DCCSLQLKNLS----------HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 326 ISEHFFSNFSYLKM----------------------------GPHF-------PKWLQTQ 350
+ F N +L++ G HF LQT
Sbjct: 413 APQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTV 472
Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDIS 410
VL +SS G+ SI + K++ ++ SHN +T + I S+ L+ ++++
Sbjct: 473 GSLEVLILSSCGLL-SIDQQAFHSLGKMSHVDLSHNSLTC---DSIDSLSHLKGIYLNLA 528
Query: 411 SNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCS 444
+N + SP L S I+LS N P+ CS
Sbjct: 529 ANSINIISPRLLPILSQQSTINLSHN----PLDCTCS 561
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 160/381 (41%), Gaps = 44/381 (11%)
Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGY-LQKMLTLSLHHN 506
++L L+L+ N ++ + + + L++LNL+ N G++ +S Y L K+ + L N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348
Query: 507 NFSGELPSLLKNFTHLRVVALEENSISG-----NIPAWI--GESLLNLVVLDLRSNRFYG 559
+ + K L+ + L +N+++ +IP G L+ L ++L +N
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN---- 404
Query: 560 KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTML 619
L HL++ ++ +L + +P + Q R + S PS +
Sbjct: 405 -----LIHLSENRLENLDILYFLLRVPHL--QILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 620 PVHIFFDIVLLTWKGSE-YEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRN 678
+++ L W+ ++ L ++ + L+ N L P L L GL+L+ N
Sbjct: 458 LGE---NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514
Query: 679 NLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQL 738
LT + +L+ LD+SRNQ P LSV+D++HN K +L
Sbjct: 515 RLT--VLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHN----KFICECEL 565
Query: 739 QSFNASVYDGNPELCGLPLPSKCWDEESAPGPAI----TKGRDDADT--SEDEDQFI--- 789
+F + N + G P C +S G ++ T+G D+ + S FI
Sbjct: 566 STFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCT 625
Query: 790 -TLGFFVTLILGFIVGFWGVC 809
TL F+ IL + F G C
Sbjct: 626 VTLTLFLMTILT-VTKFRGFC 645
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSR 701
TL +K ++L+ NK+ E L L LNLS N L + L + ++DL +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 702 NQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
N + + + +L +DL N L+
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 666 DLVGLIGLNLSRNNLTG-YITPKIGQLQSLDFLDLSRNQFSGGIPSSLS--QVNRLSVMD 722
+L L L+LS+N + Y+ P G+L SL +D S NQ L Q LS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 723 LSHNNLSGKI 732
L+ N+L ++
Sbjct: 181 LAANSLYSRV 190
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 134/361 (37%), Gaps = 110/361 (30%)
Query: 138 SQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSL-GYNKLLRAGNLDWISQL 196
S++P + LS L+ L L A F N L +LS+ G K L G + L
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENL 349
Query: 197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLET 256
+LR LDLS ++ S + C+LQL R+ SHL S
Sbjct: 350 ENLRELDLSHDDIETS------------------DCCNLQL-----RNLSHLQS------ 380
Query: 257 LGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNEL---DGEIPKFFQNMFKLE 313
L LSYN P + + P L L L+ L D + P FQN+ L+
Sbjct: 381 LNLSYNE------PLSLKTEAFKECP----QLELLDLAFTRLKVKDAQSP--FQNLHLLK 428
Query: 314 GLSLRGNSLEGVISEHFFSNFSYLK----MGPHFPKW-------LQTQKHFSVLDISSAG 362
L+L +SL + SE F L+ G HFPK LQT +L +S
Sbjct: 429 VLNL-SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 363 ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLP 422
+S SI D + TS K+ +
Sbjct: 488 LS-SI-DQHAFTSLKMMN------------------------------------------ 503
Query: 423 SNAFYIDLSKNKF-SGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLAN 481
++DLS N+ S I L G +YL+L+SN +S LP + R +NL
Sbjct: 504 ----HVDLSHNRLTSSSIEALSHLKG---IYLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 482 N 482
N
Sbjct: 557 N 557
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 42/279 (15%)
Query: 285 MISLRTLTLSDNELDGEI--PKFFQNMFKLEGLSLRGNSLEGVISEHFFSN---FSYLKM 339
+ +L LTL+ LDG + FF+ + LE L LR N+++ + FF N F L +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 340 GPHFPKWLQTQ-------KHFSVLDISSAGISDSIPDW---------FSDTSHKLADL-- 381
+ K + + KHF++L +SS + D W F +TS DL
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 382 NFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF 441
N M RF + I+ I + +S+++ G S F P +F
Sbjct: 222 NGFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSS-----------FGHTNFKDPDNF 267
Query: 442 LCSFSG---QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM 498
+F G + DLS + + L + F L L LA N + N+ L +
Sbjct: 268 --TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
L+L N + T L+ + L N + P
Sbjct: 326 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 138/360 (38%), Gaps = 43/360 (11%)
Query: 419 PSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLR-- 475
P LP++ Y+DLS N + SFS Q+L +L + + P ++ N R
Sbjct: 26 PELPAHVNYVDLSLNSIAELNE--TSFSRLQDLQFLKVEQ-----QTPGLVIRNNTFRGL 78
Query: 476 ----ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS--LLKNFTHLRVVALEE 529
IL L N F + L + L+L N G + S K T L ++ L +
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 530 NSISGNIPAWIGESLLNLVVLDLRSNR-----------FYGKIPFQLCHLADIQILDLSL 578
N+I PA ++ VLDL N+ F GK F L L+ I + D +
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK-HFTLLRLSSITLQD--M 195
Query: 579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYE 638
N KC N F T + + S F ++ R FFD + T K
Sbjct: 196 NEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKR--------FFDAIAGT-KIQSLI 245
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLD 698
N+ + S ++ K + ++ G+ +LS++ + + L+ L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305
Query: 699 LSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT--QLQSFNASVYDGNPELCGLP 756
L++N+ + ++ + L + L N L +P G +L S NP C P
Sbjct: 306 LAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 172/430 (40%), Gaps = 107/430 (24%)
Query: 209 LSKSTDWLQEVDKIP-SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
L S + L E+ ++P SLK+L ++ +L ++ S L P LE LG+S N L
Sbjct: 96 LVASCNSLTELPELPQSLKSLLVDNNNL-------KALSDL--PPLLEYLGVSNNQLEK- 145
Query: 268 IYPWLFNVS-------------SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEG 314
P L N S +PD P SL + +N+L+ E+P+ QN+ L
Sbjct: 146 -LPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLE-ELPEL-QNLPFLTA 199
Query: 315 LSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDT 374
+ NSL K P P L++ ++ I + +P+
Sbjct: 200 IYADNNSL---------------KKLPDLPLSLESI-------VAGNNILEELPE----- 232
Query: 375 SHKLADLNF-----SHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID 429
L +L F + N + P+ S+ +++ N+L P LP + ++D
Sbjct: 233 ---LQNLPFLTTIYADNNLLKTLPDLPPSLE-----ALNVRDNYLTD-LPELPQSLTFLD 283
Query: 430 LSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP 489
+S+N FSG S NL YL+ SSN + C L + L LN++NN ++P
Sbjct: 284 VSENIFSG-----LSELPPNLYYLNASSNEIRSL---CDLPPS-LEELNVSNNKL-IELP 333
Query: 490 NSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS--GNIPAWIGESLLNL 547
L++++ S +H E+P L +N L V E N + +IP +
Sbjct: 334 ALPPRLERLIA-SFNH---LAEVPELPQNLKQLHV---EYNPLREFPDIPESVE------ 380
Query: 548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAIT 607
DLR N ++P +L + + N + F + ++ NS +
Sbjct: 381 ---DLRMNSHLAEVPELPQNLKQLH--------VETNPLREFPDIPESVEDLRMNSERVV 429
Query: 608 FSYAVPSRTT 617
Y TT
Sbjct: 430 DPYEFAHETT 439
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Query: 421 LPSNAFYIDLSKN--KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
LPS F +DLS+N F G S F +L YLDLS N + + +L L L+
Sbjct: 370 LPSLEF-LDLSRNGLSFKGCCS-QSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 426
Query: 479 LANNNFSGKIPNSCGY-LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
++N S L+ ++ L + H + + + L V+ + NS N
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 538 AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG--NIP-KCFNNFTA 594
I L NL LDL + P L+ +Q+L++S NN P KC N+
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 595 M 595
+
Sbjct: 547 L 547
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 667 LVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725
L L L ++ N+ P I +L++L FLDLS+ Q P++ + ++ L V+++SH
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 726 NN 727
NN
Sbjct: 528 NN 529
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 34/182 (18%)
Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
++D + F S +NL+YLD+S + + L +L +A N+F
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-- 481
Query: 487 KIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN 546
NF ++ + L+N T L + + +S P SL +
Sbjct: 482 ------------------QENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFN-SLSS 519
Query: 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606
L VL++ N F+ F L +Q+LD SLN+I T+ QE + S++
Sbjct: 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI----------MTSKKQELQHFPSSL 569
Query: 607 TF 608
F
Sbjct: 570 AF 571
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 133 NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDW 192
N+F + +P L L +LDL P +LS LQ L++ +N +
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 193 ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP-SLKTLYLEQCDLQLQPTIHRSF 245
L SL+ LD S ++ S QE+ P SL L L Q D H+SF
Sbjct: 539 -KCLNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQNDFACTCE-HQSF 588
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 33/135 (24%)
Query: 138 SQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF 197
S+ +F+ SL L YLD+ + LS L+ L + N D ++L
Sbjct: 436 SEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494
Query: 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
+L +LDLS C L QL PT NS SL+ L
Sbjct: 495 NLTFLDLSQCQLE-------------------------QLSPTA------FNSLSSLQVL 523
Query: 258 GLSYNN-LTASIYPW 271
+S+NN + +P+
Sbjct: 524 NMSHNNFFSLDTFPY 538
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 6/180 (3%)
Query: 421 LPSNAFYIDLSKN--KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
LPS F +DLS+N F G S F +L YLDLS N + + +L L L+
Sbjct: 346 LPSLEF-LDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402
Query: 479 LANNNFSGKIPNSCGY-LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
++N S L+ ++ L + H + + + L V+ + NS N
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 538 AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ 597
I L NL LDL + P L+ +Q+L+++ N + F+ T++ +
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Query: 421 LPSNAFYIDLSKN--KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
LPS F +DLS+N F G S F +L YLDLS N + + +L L L+
Sbjct: 346 LPSLEF-LDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402
Query: 479 LANNNFSGKIPNSCGY-LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
++N S L+ ++ L + H + + + L V+ + NS N
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 538 AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG--NIP-KCFNNFTA 594
I L NL LDL + P L+ +Q+L++S NN P KC N+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 595 M 595
+
Sbjct: 523 L 523
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 667 LVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725
L L L ++ N+ P I +L++L FLDLS+ Q P++ + ++ L V+++SH
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 726 NN 727
NN
Sbjct: 504 NN 505
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 34/182 (18%)
Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
++D + F S +NL+YLD+S + + L +L +A N+F
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-- 457
Query: 487 KIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN 546
NF ++ + L+N T L + + +S P SL +
Sbjct: 458 ------------------QENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFN-SLSS 495
Query: 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606
L VL++ N F+ F L +Q+LD SLN+I T+ QE + S++
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI----------MTSKKQELQHFPSSL 545
Query: 607 TF 608
F
Sbjct: 546 AF 547
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 133 NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDW 192
N+F + +P L L +LDL P +LS LQ L++ +N +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 193 ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP-SLKTLYLEQCDLQLQPTIHRSF 245
L SL+ LD S ++ S QE+ P SL L L Q D H+SF
Sbjct: 515 KC-LNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQNDFACTCE-HQSF 564
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 33/135 (24%)
Query: 138 SQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF 197
S+ +F+ SL L YLD+ + LS L+ L + N D ++L
Sbjct: 412 SEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
+L +LDLS C L QL PT NS SL+ L
Sbjct: 471 NLTFLDLSQCQLE-------------------------QLSPTA------FNSLSSLQVL 499
Query: 258 GLSYNN-LTASIYPW 271
+S+NN + +P+
Sbjct: 500 NMSHNNFFSLDTFPY 514
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 31/310 (10%)
Query: 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG 534
R+L+L N + + L L+ N S P N +LR + L N +
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 535 NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN---ISGNIPKCFNN 591
IP + L NL LD+ N+ + + L +++ L++ N+ IS N+
Sbjct: 95 -IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 592 FTAMTQERSYNSSAITFSYAVPSRTTMLPV-HIFFDIVLLTWKGSEYEYKNTLGLVKSVD 650
+T E+ +S T + + +L + H+ + + +Y +K L +K ++
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI------RDYSFKR-LYRLKVLE 206
Query: 651 LSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPS 710
+S + + + L L+++ NLT + L L FL+LS N S S
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 711 SLSQVNRLSVMDLSHNNLSGKIP--------------TGTQLQSFNASVYD--GNPELCG 754
L ++ RL + L L+ P +G QL + SV+ GN E
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
Query: 755 L---PLPSKC 761
L PL C
Sbjct: 327 LDSNPLACDC 336
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETN 113
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 25/268 (9%)
Query: 354 SVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH 413
++LD+ + IS+ D F H A L +N+++ S + L+ + IS NH
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYA-LVLVNNKISKIHEKAFSPLRKLQK--LYISKNH 113
Query: 414 LEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLL--SGKLPDCW-- 468
L P+LPS+ + + N+ + FSG +N+ +++ N L SG P +
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 469 LQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG-ELPSLLKNFTHLRVVAL 527
L+ N LRI +P + L L HN EL LL+ ++ L + L
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELH------LDHNKIQAIELEDLLR-YSKLYRLGL 224
Query: 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPK 587
N I I L L L L +N+ ++P L L +Q++ L NNI+
Sbjct: 225 GHNQIRM-IENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITK---V 279
Query: 588 CFNNF--TAMTQERSYNSSAITFSYAVP 613
N+F +R+Y + F+ VP
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVP 307
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 113
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNS----SPSLETLGL-SYNNLTA--SIYPWLFN 274
P L+ L L +C++Q ++ ++S SHL++ +++L L +++ L++ + N
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 275 VSSIPDAP-GPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGV 325
++S+ + P G + +L+ L ++ N + ++P++F N+ LE L L N ++ +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 667 LVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725
L L L ++ N+ P I +L++L FLDLS+ Q P++ + ++ L V+++SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 726 NN 727
NN
Sbjct: 209 NN 210
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 34/182 (18%)
Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
++D + F S +NL+YLD+S + + L +L +A N+F
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-- 162
Query: 487 KIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN 546
NF ++ + L+N T L + + +S P SL +
Sbjct: 163 ------------------QENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFN-SLSS 200
Query: 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606
L VL++ N F+ F L +Q+LD SLN+I T+ QE + S++
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI----------MTSKKQELQHFPSSL 250
Query: 607 TF 608
F
Sbjct: 251 AF 252
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 18/206 (8%)
Query: 406 GIDISSNHLEGPS---PSLPSNAF-------YIDLSKN--KFSGPISFLCSFSGQNLVYL 453
GI S+ LE S SLP F + LS N F G S F +L YL
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKYL 83
Query: 454 DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGY-LQKMLTLSLHHNNFSGEL 512
DLS N + + +L L L+ ++N S L+ ++ L + H +
Sbjct: 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 513 PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572
+ + L V+ + NS N I L NL LDL + P L+ +Q
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 573 ILDLSLNNISG--NIP-KCFNNFTAM 595
+L++S NN P KC N+ +
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVL 228
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 133 NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDW 192
N+F + +P L L +LDL P +LS LQ L++ +N +
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Query: 193 ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP-SLKTLYLEQCDLQLQPTIHRSF 245
L SL+ LD S ++ S QE+ P SL L L Q D H+SF
Sbjct: 220 KC-LNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQNDFAC-TCEHQSF 269
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 33/135 (24%)
Query: 138 SQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF 197
S+ +F+ SL L YLD+ + LS L+ L + N D ++L
Sbjct: 117 SEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
+L +LDLS C L QL PT NS SL+ L
Sbjct: 176 NLTFLDLSQCQLE-------------------------QLSPTA------FNSLSSLQVL 204
Query: 258 GLSYNN-LTASIYPW 271
+S+NN + +P+
Sbjct: 205 NMSHNNFFSLDTFPY 219
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 68/160 (42%), Gaps = 25/160 (15%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 25 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 77
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAP 282
L TL L LQ P + ++ P+L L +S+N LT S+P A
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLT-----------SLPLGAL 120
Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
+ L+ L L NEL P KLE LSL N+L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 26 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 78
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
L TL L LQ P + ++ P+L L +S+N LT+ L +
Sbjct: 79 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLTSLPLGALRGLGE------ 126
Query: 284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
L+ L L NEL P KLE LSL N+L
Sbjct: 127 ----LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 25 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 77
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAP 282
L TL L LQ P + ++ P+L L +S+N LT S+P A
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLT-----------SLPLGAL 120
Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
+ L+ L L NEL P KLE LSL N L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 25 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 77
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAP 282
L TL L LQ P + ++ P+L L +S+N LT S+P A
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLT-----------SLPLGAL 120
Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
+ L+ L L NEL P KLE LSL N L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 25 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 77
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAP 282
L TL L LQ P + ++ P+L L +S+N LT S+P A
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLT-----------SLPLGAL 120
Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
+ L+ L L NEL P KLE LSL N L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 25 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 77
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
L TL L LQ P + ++ P+L L +S+N LT+ L +
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLTSLPLGALRGLGE------ 125
Query: 284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
L+ L L NEL P KLE LSL N L
Sbjct: 126 ----LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
+PP L + + +LS LL +L + L L+L C L+K LQ +P
Sbjct: 25 LPPDLPKDTTILHLS---ENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLP 77
Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAP 282
L TL L LQ P + ++ P+L L +S+N LT S+P A
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTL------PALTVLDVSFNRLT-----------SLPLGAL 120
Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
+ L+ L L NEL P KLE LSL N L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCN 208
E LDL + + L++L +L+L YN+L L AG D +++L +L + +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 209 LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI 268
L L D + L LYL L+ P+ F L L+ L L+ N L
Sbjct: 98 LP-----LGVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTK---LKELRLNTNQL---- 143
Query: 269 YPWLFNVSSIP-DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVIS 327
SIP A + +L+TL+LS N+L F + KL+ ++L GN +
Sbjct: 144 -------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 328 EHFF 331
E +
Sbjct: 197 ETLY 200
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 165 PPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKI 222
P + +L++L YLSLGYN+L L G D +L SL+ L L + L + + DK+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFD---KLTSLKELRLYNNQLKRVPEG--AFDKL 180
Query: 223 PSLKTLYLEQCDLQLQP 239
LKTL L+ L+ P
Sbjct: 181 TELKTLKLDNNQLKRVP 197
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 170/416 (40%), Gaps = 104/416 (25%)
Query: 198 SLRYLDLSSCNLS----KSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS 253
+L LDLS NL+ S WL P L+ +LE ++Q FSH S
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWL------PQLEYFFLEYNNIQ------HLFSH-----S 301
Query: 254 LETL-GLSYNNLTASIYPWLFNVSSIPDAPGP----MISLRTLTLSDNELDGEIPKFFQN 308
L L + Y NL S +++S+P + L L + DN++ G F
Sbjct: 302 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 361
Query: 309 MFKLEGLSLRGN--SLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
+ L+ LSL + SL + +E F S L P +L+++ IS
Sbjct: 362 LINLKYLSLSNSFTSLRTLTNETFVS----LAHSP-----------LHILNLTKNKISKI 406
Query: 367 IPDWFSDTSH-KLADLNFSH--NQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPS 423
D FS H ++ DL + ++TG+ E G++
Sbjct: 407 ESDAFSWLGHLEVLDLGLNEIGQELTGQ-----------EWRGLE--------------- 440
Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
N F I LS NK YL L+ N +P LQ MLR + L N +
Sbjct: 441 NIFEIYLSYNK-----------------YLQLTRNSF-ALVPS--LQRLMLRRVALKNVD 480
Query: 484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG-------NI 536
S P+ L+ + L L +NN + +L+ L ++ L+ N+++
Sbjct: 481 SS---PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 537
Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCH-LADIQILDLSLNNISGNIPKCFNN 591
P + + L +L +L+L SN F +IP ++ L +++I+DL LNN++ FNN
Sbjct: 538 PIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 592
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 107/420 (25%), Positives = 172/420 (40%), Gaps = 104/420 (24%)
Query: 198 SLRYLDLSSCNLS----KSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS 253
+L LDLS NL+ S WL P L+ +LE ++Q FSH S
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWL------PQLEYFFLEYNNIQ------HLFSH-----S 291
Query: 254 LETL-GLSYNNLTASIYPWLFNVSSIPDAPGP----MISLRTLTLSDNELDGEIPKFFQN 308
L L + Y NL S +++S+P + L L + DN++ G F
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 309 MFKLEGLSLRGN--SLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
+ L+ LSL + SL + +E F S L P +L+++ IS
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVS----LAHSP-----------LHILNLTKNKISKI 396
Query: 367 IPDWFSDTSH-KLADLNFSH--NQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPS 423
D FS H ++ DL + ++TG+ E G++
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQ-----------EWRGLE--------------- 430
Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
N F I LS NK YL L+ N +P LQ MLR + L N +
Sbjct: 431 NIFEIYLSYNK-----------------YLQLTRNSF-ALVPS--LQRLMLRRVALKNVD 470
Query: 484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG-------NI 536
S P+ L+ + L L +NN + +L+ L ++ L+ N+++
Sbjct: 471 SS---PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCH-LADIQILDLSLNNISGNIPKCFNNFTAM 595
P + + L +L +L+L SN F +IP ++ L +++I+DL LNN++ FNN ++
Sbjct: 528 PIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 10/171 (5%)
Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
+ S L SLPS +DLS N S + NL L LS N L+ +
Sbjct: 23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
++ LR L+L++N+ LQ + L L++N+ + ++ L+ +
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142
Query: 527 LEENSISGNIPAWI---GESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL 574
L +N IS P + G L L++LDL SN+ K+P L D+Q L
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL-KKLP-----LTDLQKL 186
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 170/416 (40%), Gaps = 104/416 (25%)
Query: 198 SLRYLDLSSCNLS----KSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS 253
+L LDLS NL+ S WL P L+ +LE ++Q FSH S
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWL------PQLEYFFLEYNNIQ------HLFSH-----S 296
Query: 254 LETL-GLSYNNLTASIYPWLFNVSSIPDAPGP----MISLRTLTLSDNELDGEIPKFFQN 308
L L + Y NL S +++S+P + L L + DN++ G F
Sbjct: 297 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 356
Query: 309 MFKLEGLSLRGN--SLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
+ L+ LSL + SL + +E F S L P +L+++ IS
Sbjct: 357 LINLKYLSLSNSFTSLRTLTNETFVS----LAHSP-----------LHILNLTKNKISKI 401
Query: 367 IPDWFSDTSH-KLADLNFSH--NQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPS 423
D FS H ++ DL + ++TG+ E G++
Sbjct: 402 ESDAFSWLGHLEVLDLGLNEIGQELTGQ-----------EWRGLE--------------- 435
Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
N F I LS NK YL L+ N +P LQ MLR + L N +
Sbjct: 436 NIFEIYLSYNK-----------------YLQLTRNSF-ALVPS--LQRLMLRRVALKNVD 475
Query: 484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG-------NI 536
S P+ L+ + L L +NN + +L+ L ++ L+ N+++
Sbjct: 476 SS---PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 532
Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCH-LADIQILDLSLNNISGNIPKCFNN 591
P + + L +L +L+L SN F +IP ++ L +++I+DL LNN++ FNN
Sbjct: 533 PIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 587
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCN 208
E LDL + + L++L +L+L YN+L L AG D +++L +L + +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 209 LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI 268
L L D + L LYL L+ P+ F L L+ L L+ N L
Sbjct: 98 LP-----LGVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTK---LKELRLNTNQL---- 143
Query: 269 YPWLFNVSSIP-DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVIS 327
SIP A + +L+TL+LS N+L F + KL+ ++L GN +
Sbjct: 144 -------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 328 EHFF 331
E +
Sbjct: 197 EILY 200
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 217 QEVDKIPS---LKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF 273
+E+ ++P+ + T YL + +Q +F HL LE L LS NL I F
Sbjct: 24 RELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH---LEILQLS-KNLVRKIEVGAF 79
Query: 274 NVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHF 330
N +P SL TL L DN L + F+ + KL L LR N +E + S F
Sbjct: 80 N--GLP-------SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 217 QEVDKIPS---LKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF 273
+E+ ++P+ + T YL + +Q +F HL LE L LS NL I F
Sbjct: 24 RELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH---LEILQLS-KNLVRKIEVGAF 79
Query: 274 NVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHF 330
N +P SL TL L DN L + F+ + KL L LR N +E + S F
Sbjct: 80 N--GLP-------SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 106/486 (21%), Positives = 191/486 (39%), Gaps = 78/486 (16%)
Query: 135 FSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS 194
S S++ + I S ++++YLD+ F+ L+YL L +NKL++
Sbjct: 42 LSLSKLRILIISHNRIQYLDISVFKFN----------QELEYLDLSHNKLVKIS----CH 87
Query: 195 QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL 254
+L++LDL S N + +E + LK L L L+ + +HLN S L
Sbjct: 88 PTVNLKHLDL-SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL--PIAHLNISKVL 144
Query: 255 ETLGLSYNNLTASIYPWLFNVSSIPDA-PGP-----MISLRTLTLSDNEL--------DG 300
LG +Y FN S+ P ++ + T+++ EL D
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204
Query: 301 EIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS 360
+ F + KL+ N I + S L++ H W +FS+ ++
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW-----YFSISNVKL 259
Query: 361 AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPS-- 418
G D +S TS K ++ + + G +YI +F ++I + + G
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF----SNMNIKNFTVSGTRMV 315
Query: 419 ----PSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS--GKLPDCWLQFN 472
PS S ++D S N + + C + L L L N L K+ + Q
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMK 374
Query: 473 MLRILNLANNNFS-GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS 531
L+ L+++ N+ S + C + + +L+L++ N + ++
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT--------------------DT 414
Query: 532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN 591
I +P I VLDL SN+ IP Q+ L +Q L+++ N + F+
Sbjct: 415 IFRCLPPRIK-------VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDR 466
Query: 592 FTAMTQ 597
T++ +
Sbjct: 467 LTSLQK 472
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 171 LSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
L ++YL+LG NKL ++ + +L +L YL L+ L + + DK+ +LK L L
Sbjct: 62 LPNVRYLALGGNKL---HDISALKELTNLTYLILTGNQLQSLPNGV--FDKLTNLKELVL 116
Query: 231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN--VSSIPDAP-GPMIS 287
+ LQ P G+ ++ LT Y +L++ + S+P + +
Sbjct: 117 VENQLQSLPD-----------------GV-FDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV 325
L L L +N+L F + +L+ LSL N L+ V
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN 506
++++ L+LSSN+L+G + C +++L+L NN IP +LQ + L++ N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483
Query: 507 NFSGELPSLLKNFTHLRVVALEENSISGNIPA 538
+ T L+ + L +N P
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT 389
WLQ F++ +SS + P + +TS LAD +H + T
Sbjct: 157 WLQADAAFTLAQLSSGVRGQTAPAFLPETSDALADWYLAHPEAT 200
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT 389
WLQ F++ +SS + P + +TS LAD +H + T
Sbjct: 157 WLQADAAFTLAQLSSGVRGQTAPAFLPETSDALADWYLAHPEAT 200
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 479 LANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNI 536
L N+N G+I + G L ++ L L N +G P+ + +H++ + L EN I I
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EI 93
Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT 596
+ L L L+L N+ +P HL + L+L+ N + N + F
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW--FAEWL 151
Query: 597 QERSYNSSAITFSYAVPSRT 616
+++S N A PS+
Sbjct: 152 RKKSLNGGAA--RCGAPSKV 169
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Query: 645 LVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
LVK ++L N+L G P + L L N + L L L+L NQ
Sbjct: 56 LVK-LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 705 SGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP 756
S +P S +N L+ ++L+ N + + +G CG P
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 199 LRYLDLSSCNLSKSTDWLQEVD-KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
+ Y L+ NL ++ +VD +P L TL L LQ P + ++ P+L L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL------PALTVL 105
Query: 258 GLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSL 317
+S+N LT+ L + L+ L L NEL P KLE LSL
Sbjct: 106 DVSFNRLTSLPLGALRGLGE----------LQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 318 RGNSL 322
N+L
Sbjct: 156 ANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 199 LRYLDLSSCNLSKSTDWLQEVD-KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
+ Y L+ NL ++ +VD +P L TL L LQ P + ++ P+L L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL------PALTVL 105
Query: 258 GLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSL 317
+S+N LT+ L + L+ L L NEL P KLE LSL
Sbjct: 106 DVSFNRLTSLPLGALRGLGE----------LQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 318 RGNSL 322
N+L
Sbjct: 156 ANNNL 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 199 LRYLDLSSCNLSKSTDWLQEVD-KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
+ Y L+ NL ++ +VD +P L TL L LQ P + ++ P+L L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL------PALTVL 105
Query: 258 GLSYNNLTASIYPWLFNVSSIP-DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLS 316
+S+N LT S+P A + L+ L L NEL P KLE LS
Sbjct: 106 DVSFNRLT-----------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 317 LRGNSL 322
L N+L
Sbjct: 155 LANNNL 160
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
L ++ + L N L + DL L L L N ++ L SLD L L +N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG--TQLQSFNASVYDGNPELC 753
+ + P + + RL + L NNLS +PT L++ + NP +C
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC 238
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
L ++ + L N L + DL L L L N ++ L SLD L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG--TQLQSFNASVYDGNPELC 753
+ + P + + RL + L NNLS +PT L++ + NP +C
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC 239
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552
G + + L L N F+ +P L N+ HL ++ L N IS + ++ L+ L L
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLIL 85
Query: 553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ 597
NR P L +++L L N+IS FN+ +A++
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYL 337
M L TL LS N L P+ F + L LSL GN + V+ E F++ S L
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 665 MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN--QFSGGIPSSLSQVNRLSVMD 722
+DL L L L+ N G I+ K L SL +LDLSRN FSG S N L +D
Sbjct: 320 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 377
Query: 723 LSHN 726
LS N
Sbjct: 378 LSFN 381
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 665 MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN--QFSGGIPSSLSQVNRLSVMD 722
+DL L L L+ N G I+ K L SL +LDLSRN FSG S N L +D
Sbjct: 325 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 723 LSHN 726
LS N
Sbjct: 383 LSFN 386
>pdb|1PV3|A Chain A, Nmr Solution Structure Of The Avian Fat-Domain Of Focal
Adhesion Kinase
Length = 146
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 19 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 55
>pdb|1QVX|A Chain A, Solution Structure Of The Fat Domain Of Focal Adhesion
Kinase
Length = 134
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 7 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 43
>pdb|2L6H|A Chain A, Fat Domain Of Focal Adhesion Kinase Tethered To Ld4 Motif
Of Paxillin Via Ggs Linker
Length = 180
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 12 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 48
>pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of Focal Adhesion
Kinase
Length = 126
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 5 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 41
>pdb|1KTM|A Chain A, Solution Structure Of Fat Domain Of Focal Adhesion Kinase
Length = 139
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 12 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 48
>pdb|1OW6|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW6|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW6|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|A Chain A, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|B Chain B, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|C Chain C, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
Length = 161
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 34 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 70
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 458 NLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN 506
N L GKLP + L LNLA N + N CG+ +++ LS HN
Sbjct: 340 NQLEGKLPAFGSEI-KLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 162 GPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDK 221
G + L L L +L+L NKL L+ + +L L+ LDL +C ++ D+ + V K
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144
Query: 222 -IPSLKTLYLEQCDLQLQ 238
+P L YL+ D + Q
Sbjct: 145 LLPQLT--YLDGYDREDQ 160
>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|3B71|A Chain A, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
pdb|3B71|B Chain B, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
pdb|3B71|C Chain C, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
Length = 162
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 35 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 71
>pdb|3S9O|A Chain A, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
pdb|3S9O|B Chain B, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
pdb|3S9O|C Chain C, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
Length = 164
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 37 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 73
>pdb|2L6F|A Chain A, Nmr Solution Structure Of Fat Domain Of Fak Complexed With
Ld2 And Ld4 Motifs Of Paxillin
Length = 215
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 12 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 48
>pdb|2L6G|A Chain A, Fat-Ld2 Double Labeled Construct With Free Ld4 Peptide
Length = 176
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
Y+N GLVK+V S+K+ PEE + +V +GL L
Sbjct: 12 YENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLAL 48
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
VKS+DLS+N++ ++ V L L L+ N + L SL+ LDLS N S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 706 GGIPSSLSQVNRLSVMDL 723
S ++ L+ ++L
Sbjct: 114 NLSSSWFKPLSSLTFLNL 131
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
VKS+DLS+N++ ++ V L L L+ N + L SL+ LDLS N S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 706 G 706
Sbjct: 88 N 88
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 279 PDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
P A P LR + LS+N++ P FQ + L L L GN +
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 279 PDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
P A P LR + LS+N++ P FQ + L L L GN +
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 272 LFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFF 331
+ N+ IP+ P+I L L LS N L P FQ + L+ L + + ++ VI + F
Sbjct: 194 MCNLREIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAF 251
Query: 332 SNFSYL 337
N L
Sbjct: 252 DNLQSL 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,332,252
Number of Sequences: 62578
Number of extensions: 1073861
Number of successful extensions: 2745
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 427
length of query: 850
length of database: 14,973,337
effective HSP length: 107
effective length of query: 743
effective length of database: 8,277,491
effective search space: 6150175813
effective search space used: 6150175813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)