Query 048351
Match_columns 850
No_of_seqs 875 out of 5378
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:44:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-72 2.5E-77 698.7 47.7 584 36-756 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.4E-58 9.5E-63 568.7 41.0 518 123-756 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.4E-38 7.4E-43 329.8 6.0 271 448-770 197-486 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 5.8E-41 1.3E-45 336.2 -14.1 473 125-729 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 6.9E-36 1.5E-40 312.6 8.6 357 151-592 81-439 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 1.6E-38 3.5E-43 318.7 -13.3 471 115-705 60-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.7E-37 8E-42 339.2 -5.3 482 128-727 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.7E-35 5.9E-40 324.6 -6.0 265 402-726 241-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.9E-34 1.1E-38 300.1 -0.9 399 120-734 4-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 5.7E-34 1.2E-38 299.6 -3.0 370 83-562 8-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.9E-21 6.3E-26 239.9 28.4 139 217-387 552-692 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.3E-21 7.2E-26 239.4 26.1 341 166-580 552-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.5E-26 225.3 18.0 261 353-734 203-463 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 8E-22 1.7E-26 226.7 16.4 260 334-714 208-467 (788)
15 KOG4237 Extracellular matrix p 99.9 2.5E-23 5.5E-28 209.7 -1.6 90 467-557 269-358 (498)
16 KOG4237 Extracellular matrix p 99.8 1.7E-22 3.6E-27 203.9 0.3 277 449-729 68-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.1E-19 2.4E-24 210.8 13.7 181 377-582 179-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.2E-20 1.8E-24 211.8 12.1 292 351-733 178-474 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.8E-23 188.1 2.9 213 468-728 77-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.4E-23 187.5 2.2 84 127-210 2-94 (319)
21 KOG0617 Ras suppressor protein 99.7 2.1E-18 4.6E-23 154.6 -3.7 85 494-582 31-115 (264)
22 KOG0617 Ras suppressor protein 99.7 4.8E-18 1E-22 152.4 -3.1 163 470-690 31-194 (264)
23 PLN03150 hypothetical protein; 99.6 5.4E-15 1.2E-19 171.6 12.5 117 646-762 420-538 (623)
24 PLN03150 hypothetical protein; 99.5 4.2E-14 9.1E-19 164.2 13.3 128 33-184 367-502 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 8.5E-14 1.9E-18 147.7 -1.9 195 471-727 74-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.6E-18 145.6 -2.2 196 446-703 73-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 8.2E-12 1.8E-16 139.0 7.4 199 452-711 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 138.2 7.3 200 475-735 96-296 (394)
29 KOG3207 Beta-tubulin folding c 99.1 2.8E-11 6E-16 125.2 0.6 190 120-324 118-315 (505)
30 KOG3207 Beta-tubulin folding c 99.0 4E-11 8.8E-16 124.0 0.9 64 146-210 119-185 (505)
31 KOG1259 Nischarin, modulator o 99.0 5.7E-11 1.2E-15 116.6 0.8 83 646-731 331-414 (490)
32 KOG1909 Ran GTPase-activating 99.0 3.9E-11 8.5E-16 120.9 -0.8 228 115-363 50-310 (382)
33 KOG1909 Ran GTPase-activating 99.0 2.9E-11 6.3E-16 121.8 -3.0 259 116-414 23-310 (382)
34 PF14580 LRR_9: Leucine-rich r 98.9 3.8E-10 8.3E-15 107.3 3.4 131 119-259 15-147 (175)
35 PF14580 LRR_9: Leucine-rich r 98.9 5.2E-10 1.1E-14 106.4 3.7 121 448-575 19-146 (175)
36 KOG1259 Nischarin, modulator o 98.9 4E-10 8.6E-15 110.8 2.1 139 511-707 275-414 (490)
37 PF08263 LRRNT_2: Leucine rich 98.8 3.8E-09 8.1E-14 75.3 4.4 40 37-78 2-43 (43)
38 KOG0531 Protein phosphatase 1, 98.8 4.6E-10 1E-14 125.1 -1.0 85 646-733 234-322 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 2.4E-09 5.3E-14 83.6 2.8 60 669-728 2-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 1.4E-09 3.1E-14 121.2 0.2 57 670-729 234-290 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 5E-09 1.1E-13 81.8 2.4 61 644-704 1-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.5 1.5E-07 3.2E-12 112.2 7.1 111 119-232 567-677 (889)
43 KOG1859 Leucine-rich repeat pr 98.4 7.7E-09 1.7E-13 113.4 -5.6 107 643-754 186-294 (1096)
44 KOG1859 Leucine-rich repeat pr 98.3 1.1E-08 2.5E-13 112.1 -6.9 180 489-731 102-294 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 7.9E-09 1.7E-13 101.9 -7.8 184 150-361 187-373 (419)
46 KOG4579 Leucine-rich repeat (L 98.3 2.5E-08 5.4E-13 87.2 -4.0 85 647-734 80-164 (177)
47 KOG4658 Apoptotic ATPase [Sign 98.3 5.7E-07 1.2E-11 107.2 5.6 129 423-556 523-653 (889)
48 KOG2982 Uncharacterized conser 98.3 2.4E-07 5.3E-12 91.6 2.0 86 173-264 46-133 (418)
49 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 83.4 -3.3 100 646-749 55-155 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.1 3.9E-07 8.4E-12 89.1 -1.8 199 119-324 26-256 (388)
51 KOG2120 SCF ubiquitin ligase, 98.0 3.9E-07 8.3E-12 90.3 -4.3 60 252-320 185-244 (419)
52 COG5238 RNA1 Ran GTPase-activa 97.8 1.1E-05 2.3E-10 79.2 3.0 93 144-236 26-133 (388)
53 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 56.4 2.5 17 688-704 20-36 (44)
54 KOG2982 Uncharacterized conser 97.7 4.4E-06 9.4E-11 83.0 -1.0 184 121-325 69-264 (418)
55 PRK15386 type III secretion pr 97.7 8.5E-05 1.8E-09 79.7 7.3 76 492-581 48-124 (426)
56 KOG1644 U2-associated snRNP A' 97.6 6.6E-05 1.4E-09 70.9 5.0 107 123-232 42-149 (233)
57 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 76.9 9.3 142 118-297 47-188 (426)
58 PF12799 LRR_4: Leucine Rich r 97.6 8E-05 1.7E-09 53.1 4.1 39 286-325 1-39 (44)
59 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.8E-10 90.8 2.3 155 148-316 122-281 (699)
60 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.8E-09 69.0 5.4 103 473-579 43-150 (233)
61 KOG2739 Leucine-rich acidic nu 97.5 6.7E-05 1.5E-09 74.1 3.1 97 113-212 33-131 (260)
62 KOG3665 ZYG-1-like serine/thre 97.3 0.00014 3E-09 84.9 3.2 146 122-271 121-269 (699)
63 PF13306 LRR_5: Leucine rich r 97.0 0.0013 2.9E-08 60.1 6.4 102 447-554 11-112 (129)
64 PF13306 LRR_5: Leucine rich r 96.9 0.0021 4.5E-08 58.8 6.8 124 465-595 5-128 (129)
65 KOG2123 Uncharacterized conser 96.7 5.4E-05 1.2E-09 74.7 -5.8 86 121-211 17-102 (388)
66 KOG2739 Leucine-rich acidic nu 96.4 0.0014 3E-08 65.0 1.7 63 469-533 40-104 (260)
67 KOG2123 Uncharacterized conser 96.1 0.00043 9.2E-09 68.6 -3.5 86 448-537 19-105 (388)
68 KOG4341 F-box protein containi 95.6 0.00059 1.3E-08 71.6 -5.2 36 173-208 139-175 (483)
69 PF00560 LRR_1: Leucine Rich R 95.0 0.0079 1.7E-07 35.6 0.4 11 695-705 3-13 (22)
70 PF00560 LRR_1: Leucine Rich R 94.7 0.01 2.3E-07 35.1 0.4 19 670-689 2-20 (22)
71 KOG4341 F-box protein containi 93.9 0.0038 8.2E-08 65.7 -4.5 88 120-207 161-252 (483)
72 KOG4308 LRR-containing protein 93.8 0.00089 1.9E-08 74.9 -10.2 92 172-264 87-184 (478)
73 KOG4308 LRR-containing protein 93.4 0.00063 1.4E-08 76.1 -12.1 98 221-325 202-305 (478)
74 KOG0473 Leucine-rich repeat pr 92.8 0.0067 1.5E-07 58.7 -4.5 83 644-729 42-124 (326)
75 KOG1947 Leucine rich repeat pr 91.7 0.041 8.9E-07 63.0 -0.8 39 349-387 241-280 (482)
76 PF13504 LRR_7: Leucine rich r 88.9 0.21 4.6E-06 27.3 0.9 13 124-136 2-14 (17)
77 smart00370 LRR Leucine-rich re 88.0 0.37 8E-06 29.7 1.7 14 692-705 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 88.0 0.37 8E-06 29.7 1.7 14 692-705 2-15 (26)
79 KOG0473 Leucine-rich repeat pr 87.4 0.025 5.4E-07 55.0 -5.7 86 468-557 38-123 (326)
80 smart00370 LRR Leucine-rich re 86.5 0.45 9.8E-06 29.3 1.5 21 520-541 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 86.5 0.45 9.8E-06 29.3 1.5 21 520-541 2-22 (26)
82 KOG1947 Leucine rich repeat pr 84.8 0.25 5.4E-06 56.5 -0.5 138 120-261 185-330 (482)
83 KOG3864 Uncharacterized conser 83.2 0.2 4.4E-06 48.0 -1.7 82 149-232 102-185 (221)
84 PF13516 LRR_6: Leucine Rich r 81.1 0.59 1.3E-05 28.1 0.4 17 286-302 2-18 (24)
85 KOG4242 Predicted myosin-I-bin 74.6 18 0.00039 39.7 9.2 61 449-509 414-481 (553)
86 KOG3864 Uncharacterized conser 69.8 0.97 2.1E-05 43.5 -1.2 34 544-577 150-184 (221)
87 smart00364 LRR_BAC Leucine-ric 69.4 3.3 7.2E-05 25.5 1.4 18 716-734 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 67.5 4 8.6E-05 25.2 1.5 14 692-705 2-15 (26)
89 KOG4242 Predicted myosin-I-bin 63.9 32 0.00069 37.8 8.4 22 350-371 164-185 (553)
90 smart00368 LRR_RI Leucine rich 58.0 8.5 0.00018 24.2 1.9 14 123-136 2-15 (28)
91 PF04478 Mid2: Mid2 like cell 45.5 4.6 0.0001 36.9 -1.1 9 823-831 80-88 (154)
92 KOG3763 mRNA export factor TAP 41.0 9.9 0.00022 42.5 0.3 68 222-300 217-284 (585)
93 TIGR00864 PCC polycystin catio 39.8 18 0.00039 48.6 2.3 32 674-705 1-32 (2740)
94 PF02439 Adeno_E3_CR2: Adenovi 35.7 42 0.0009 22.8 2.4 18 792-809 7-24 (38)
95 KOG3763 mRNA export factor TAP 34.4 30 0.00064 38.9 2.6 38 349-386 216-254 (585)
96 PF01102 Glycophorin_A: Glycop 29.1 34 0.00074 30.5 1.7 19 793-811 65-83 (122)
97 PF08374 Protocadherin: Protoc 28.4 25 0.00055 34.2 0.8 26 790-815 36-61 (221)
98 smart00367 LRR_CC Leucine-rich 24.5 26 0.00057 21.4 0.1 9 174-182 4-12 (26)
99 TIGR00864 PCC polycystin catio 21.6 49 0.0011 44.9 1.7 33 650-682 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-72 Score=698.74 Aligned_cols=584 Identities=33% Similarity=0.522 Sum_probs=507.4
Q ss_pred cHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCCcccc
Q 048351 36 IEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTL 115 (850)
Q Consensus 36 ~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~g~l 115 (850)
.++|++||++||+++.+|.+.+.+|. .+.+||.|.||+|++ .++|+.++|++ +.++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----------------~~i~~~~ 85 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----------------KNISGKI 85 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----------------CCccccC
Confidence 56899999999999988888889997 467899999999985 57999999998 5788999
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccc
Q 048351 116 NPALLKLHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS 194 (850)
Q Consensus 116 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~ 194 (850)
++++..+++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++|.+. ...+..++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~-~~~p~~~~ 161 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS-GEIPNDIG 161 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc-ccCChHHh
Confidence 99999999999999999999985 887655 899999999999999998885 56899999999999863 34455688
Q ss_pred cCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhc
Q 048351 195 QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN 274 (850)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 274 (850)
++++|++|++++|.+.+. +|..+.++++|++|++++|.+.+..| ..+.++ ++|++|++++|++++.+
T Consensus 162 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~~------ 228 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGK--IPNSLTNLTSLEFLTLASNQLVGQIP----RELGQM-KSLKWIYLGYNNLSGEI------ 228 (968)
T ss_pred cCCCCCEEECccCccccc--CChhhhhCcCCCeeeccCCCCcCcCC----hHHcCc-CCccEEECcCCccCCcC------
Confidence 999999999999988774 56788889999999999999888776 566666 88999999999888764
Q ss_pred CCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCC
Q 048351 275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS 354 (850)
Q Consensus 275 l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~ 354 (850)
|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+| ..+.++++|+
T Consensus 229 ----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------~~l~~l~~L~ 287 (968)
T PLN00113 229 ----PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----------------PSIFSLQKLI 287 (968)
T ss_pred ----ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----------------hhHhhccCcC
Confidence 4446778889999999999988888889999999999999888876544 3477788888
Q ss_pred EEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCc
Q 048351 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNK 434 (850)
Q Consensus 355 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~ 434 (850)
.|++++|.+.+.+|..+... ++|++|++++|.+.+..|..+ ... ++|+.|++++|.+++.+|..+
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~p~~l------------ 352 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL-TSL-PRLQVLQLWSNKFSGEIPKNL------------ 352 (968)
T ss_pred EEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH-hcC-CCCCEEECcCCCCcCcCChHH------------
Confidence 89998888888888877654 678888888888888877766 322 556666666665555444321
Q ss_pred CcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCch
Q 048351 435 FSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS 514 (850)
Q Consensus 435 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 514 (850)
. .+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|.
T Consensus 353 ---------~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 353 ---------G-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred ---------h-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 1 347899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCccc
Q 048351 515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA 594 (850)
Q Consensus 515 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 594 (850)
.+..+++|+.|++++|.+++.+|..+. .+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.+++.
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc
Confidence 999999999999999999988888776 69999999999999999888765 4689999999999999998887766655
Q ss_pred CccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEe
Q 048351 595 MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN 674 (850)
Q Consensus 595 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 674 (850)
| +.|+|++|++++.+|..++.+++|++|+
T Consensus 501 L---------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 501 L---------------------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred c---------------------------------------------------CEEECcCCcceeeCChHHcCccCCCEEE
Confidence 5 8899999999999999999999999999
Q ss_pred cCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCC
Q 048351 675 LSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCG 754 (850)
Q Consensus 675 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~ 754 (850)
|++|.+++.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..+++.++...++.|||.+||
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 048351 755 LP 756 (850)
Q Consensus 755 ~~ 756 (850)
.+
T Consensus 610 ~~ 611 (968)
T PLN00113 610 GD 611 (968)
T ss_pred Cc
Confidence 64
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.4e-58 Score=568.65 Aligned_cols=518 Identities=33% Similarity=0.438 Sum_probs=446.8
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccC-CCCCCcEEEccCCCCCCCCCccccccCCCccE
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLG-NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRY 201 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 201 (850)
.+++.|||++|.+++. +|..+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+....+ .+.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence 4789999999999996 888899999999999999999999998754 99999999999998643221 256889999
Q ss_pred EeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCC
Q 048351 202 LDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA 281 (850)
Q Consensus 202 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~ 281 (850)
|++++|.+++. ++..++.+++|++|++++|.+.+..| ..+.++ ++|++|++++|++++. +|..
T Consensus 145 L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~~----------~p~~ 207 (968)
T PLN00113 145 LDLSNNMLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIP----NSLTNL-TSLEFLTLASNQLVGQ----------IPRE 207 (968)
T ss_pred EECcCCccccc--CChHHhcCCCCCEEECccCcccccCC----hhhhhC-cCCCeeeccCCCCcCc----------CChH
Confidence 99999999864 66788999999999999999888777 566666 8999999999998876 4445
Q ss_pred CCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCC
Q 048351 282 PGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSA 361 (850)
Q Consensus 282 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n 361 (850)
++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+| ..+.++++|+.|++++|
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-----------------SSLGNLKNLQYLFLYQN 270 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-----------------hhHhCCCCCCEEECcCC
Confidence 6788899999999999999999999999999999999998876544 34788889999999999
Q ss_pred cCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcccc
Q 048351 362 GISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF 441 (850)
Q Consensus 362 ~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 441 (850)
.+.+.+|..+... ++|++|++++|.+.+.+|..+ ... .+++.|++++|.+++..|..+.
T Consensus 271 ~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~-~~l-~~L~~L~l~~n~~~~~~~~~~~------------------ 329 (968)
T PLN00113 271 KLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELV-IQL-QNLEILHLFSNNFTGKIPVALT------------------ 329 (968)
T ss_pred eeeccCchhHhhc-cCcCEEECcCCeeccCCChhH-cCC-CCCcEEECCCCccCCcCChhHh------------------
Confidence 9988888887664 688888998888888888776 322 5566666666655554443221
Q ss_pred ccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCC
Q 048351 442 LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTH 521 (850)
Q Consensus 442 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 521 (850)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++
T Consensus 330 ----~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 330 ----SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred ----cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351 522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY 601 (850)
Q Consensus 522 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 601 (850)
|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .
T Consensus 406 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~--------- 474 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S--------- 474 (968)
T ss_pred CCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c---------
Confidence 99999999999999998877 799999999999999999999999999999999999999988876542 1
Q ss_pred CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 681 (850)
+.|+.||+++|++++.+|..+.++++|+.|+|++|+++
T Consensus 475 ------------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 475 ------------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred ------------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 23489999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCCCCCC
Q 048351 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 756 (850)
+.+|..++++++|++|+|++|++++.+|..+..+++|++||+++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus 513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999999975 344556666788888776444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-38 Score=329.79 Aligned_cols=271 Identities=23% Similarity=0.257 Sum_probs=194.4
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.---.|.++++|+.|.|..|++...-...|..+.++++|+|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 56777788888887666667777888888888888776333456777888888888888887666677778888888888
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAIT 607 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 607 (850)
+.|+++..-..|++ ++++|+.|++++|.|...-++.+..+++|++|||++|+|+...+..|..+..|
T Consensus 277 ~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------ 343 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------ 343 (873)
T ss_pred ccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh------------
Confidence 88888744445666 68888888888888877777777778888888888888875555555444433
Q ss_pred cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc-
Q 048351 608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP- 686 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~- 686 (850)
+.|+|++|.+...-...|..+++|++|||++|.+++.|.+
T Consensus 344 ---------------------------------------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 344 ---------------------------------------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred ---------------------------------------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 6778888888766666777788888888888888776654
Q ss_pred --cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCC------
Q 048351 687 --KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLP------ 758 (850)
Q Consensus 687 --~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~------ 758 (850)
.|..|++|+.|+|.+|+|..+....|.++..|++|||.+|.+-..-|....--.+....+..-..+|+|.+.
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence 366678888888888888877777788888888888888877644443322224444455556677877543
Q ss_pred ----------CCCCCCCCCCCC
Q 048351 759 ----------SKCWDEESAPGP 770 (850)
Q Consensus 759 ----------~~c~~~~~~~~~ 770 (850)
..|.+|+...+.
T Consensus 465 ~~~~lq~sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 465 YRRKLQSSVIAKCAYPEPLADQ 486 (873)
T ss_pred HhcccccceeeeccCCcccccc
Confidence 468887776554
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.8e-41 Score=336.21 Aligned_cols=473 Identities=23% Similarity=0.328 Sum_probs=248.7
Q ss_pred CCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeC
Q 048351 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDL 204 (850)
Q Consensus 125 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L 204 (850)
|+.|++++|.+. .+.+.+.++..|.+|++++|+++ ..|.+++.+.+++.|+.++|++ ...++.+..+.+|+.+++
T Consensus 47 l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 47 LQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccHHHhhhhhhhhhhc
Confidence 444455555544 23344444555555555555554 3444455555555555555543 222333444445555555
Q ss_pred CCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCC
Q 048351 205 SSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGP 284 (850)
Q Consensus 205 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~ 284 (850)
++|.+.. .+++++.+..|+.++..+|+++..++ +++.+ .+|..+++.+|++.. +|+..-+
T Consensus 122 s~n~~~e---l~~~i~~~~~l~dl~~~~N~i~slp~-----~~~~~-~~l~~l~~~~n~l~~-----------l~~~~i~ 181 (565)
T KOG0472|consen 122 SSNELKE---LPDSIGRLLDLEDLDATNNQISSLPE-----DMVNL-SKLSKLDLEGNKLKA-----------LPENHIA 181 (565)
T ss_pred cccceee---cCchHHHHhhhhhhhccccccccCch-----HHHHH-HHHHHhhccccchhh-----------CCHHHHH
Confidence 5554444 23444445555555555555554443 33333 455555555555443 2222223
Q ss_pred CCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364 (850)
Q Consensus 285 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (850)
++.|++||...|.+. .+|..++.+.+|+.|+|.+|++... | .|..+..|.++.++.|++.
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l------------------P-ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL------------------P-EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC------------------C-CCCccHHHHHHHhcccHHH
Confidence 455555555555544 4455555555555555555554421 1 1344444444444444443
Q ss_pred CCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccc
Q 048351 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS 444 (850)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 444 (850)
.+|....+.++++..||+.+|+++ ..|..+ ... .++..||+++|.+++.++ ...
T Consensus 242 -~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clL-rsL~rLDlSNN~is~Lp~---------------------sLg- 295 (565)
T KOG0472|consen 242 -MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLL-RSLERLDLSNNDISSLPY---------------------SLG- 295 (565)
T ss_pred -hhHHHHhcccccceeeeccccccc-cCchHH-HHh-hhhhhhcccCCccccCCc---------------------ccc-
Confidence 234444434445555555555555 344333 221 223333333333332222 111
Q ss_pred cCCCCccEEEccCCCCCCCCCcccccCC---CCCEEE-------cCCCc---c-ccc-CC---CccccccCccEEeccCC
Q 048351 445 FSGQNLVYLDLSSNLLSGKLPDCWLQFN---MLRILN-------LANNN---F-SGK-IP---NSCGYLQKMLTLSLHHN 506 (850)
Q Consensus 445 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~---~L~~L~-------Ls~N~---l-~~~-~p---~~~~~l~~L~~L~Ls~N 506 (850)
++ .|+.|.+.+|.+... -..+-+.. -|++|. ++.-. - .+. .+ .......+.+.|++++-
T Consensus 296 -nl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 296 -NL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred -cc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 11 455555555554311 11110000 011110 00000 0 000 00 11223456667777777
Q ss_pred ccccCCchhhcCCCC---cCeeccccccceeecchhHHhcCCCCCEE-EccCCccccccCcCcCCCCCcceeecccccCc
Q 048351 507 NFSGELPSLLKNFTH---LRVVALEENSISGNIPAWIGESLLNLVVL-DLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582 (850)
Q Consensus 507 ~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~ip~~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 582 (850)
+++ .+|+....... ....+++.|++. ++|..+. .+..+.+. ++++|.+ +.+|..++.+++|..|+|++|.+.
T Consensus 373 qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 373 QLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred ccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh
Confidence 776 44544333333 666777777776 7776655 24444433 3444444 466777777777777777777665
Q ss_pred ccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChh
Q 048351 583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPE 662 (850)
Q Consensus 583 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 662 (850)
.+|..++.+-. |+.||+|+|+|. .+|.
T Consensus 449 -~LP~e~~~lv~---------------------------------------------------Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 449 -DLPEEMGSLVR---------------------------------------------------LQTLNLSFNRFR-MLPE 475 (565)
T ss_pred -hcchhhhhhhh---------------------------------------------------hheecccccccc-cchH
Confidence 55555444333 378888999887 7888
Q ss_pred hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351 663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 663 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 729 (850)
.+-.+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|++.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888888887777788888777777888999999999999988 77888999999999999999987
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-36 Score=312.56 Aligned_cols=357 Identities=25% Similarity=0.249 Sum_probs=202.6
Q ss_pred CEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEc
Q 048351 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230 (850)
Q Consensus 151 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 230 (850)
+.||+++|.++..-+..|.++++|+.+++.+|.+... |...+...+|+.|+|.+|.|+.+. .+++..++.|+.|||
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I--P~f~~~sghl~~L~L~~N~I~sv~--se~L~~l~alrslDL 156 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI--PRFGHESGHLEKLDLRHNLISSVT--SEELSALPALRSLDL 156 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhc--ccccccccceeEEeeecccccccc--HHHHHhHhhhhhhhh
Confidence 4466666666655555666666666666666654221 111222334666666666666552 255666666666666
Q ss_pred cCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCC
Q 048351 231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310 (850)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 310 (850)
+.|.++..+. .++-.. .++++|+|++|+|+.. -...|..+.+|..|.|+.|+++...+..|.+++
T Consensus 157 SrN~is~i~~----~sfp~~-~ni~~L~La~N~It~l----------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 157 SRNLISEIPK----PSFPAK-VNIKKLNLASNRITTL----------ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP 221 (873)
T ss_pred hhchhhcccC----CCCCCC-CCceEEeecccccccc----------ccccccccchheeeecccCcccccCHHHhhhcc
Confidence 6666665544 334343 6788888888887753 223466777888888888888876667778888
Q ss_pred CCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcc
Q 048351 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG 390 (850)
Q Consensus 311 ~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 390 (850)
+|+.|+|..|+|.-.--.+ |..+++|+.|.+..|++...-...|+.+ .++++|+|+.|++..
T Consensus 222 ~L~~LdLnrN~irive~lt-----------------FqgL~Sl~nlklqrN~I~kL~DG~Fy~l-~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLT-----------------FQGLPSLQNLKLQRNDISKLDDGAFYGL-EKMEHLNLETNRLQA 283 (873)
T ss_pred hhhhhhccccceeeehhhh-----------------hcCchhhhhhhhhhcCcccccCcceeee-cccceeecccchhhh
Confidence 8888888888876332111 6677777777777777776555555443 567777777776664
Q ss_pred cCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCccccc
Q 048351 391 RFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ 470 (850)
Q Consensus 391 ~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 470 (850)
.-..++. ++++|+.|+||+|.|...-++.+..
T Consensus 284 vn~g~lf------------------------------------------------gLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 284 VNEGWLF------------------------------------------------GLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhccccc------------------------------------------------ccchhhhhccchhhhheeecchhhh
Confidence 3333321 2244555555555554444445555
Q ss_pred CCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchh--HHhcCCCCC
Q 048351 471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW--IGESLLNLV 548 (850)
Q Consensus 471 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~--~~~~l~~L~ 548 (850)
+++|++|+|++|+++...+.+|..+..|++|+|++|+++..-...|..+++|+.|||++|.++..|.+. .+.++++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 555555555555555444444555555555555555554433444455555555555555555444321 223445555
Q ss_pred EEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCc
Q 048351 549 VLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF 592 (850)
Q Consensus 549 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 592 (850)
.|++.+|++..+.-.+|.++++|++|||.+|.|..+.|..|..+
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 55555555554434445555555555555555554555554444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-38 Score=318.71 Aligned_cols=471 Identities=25% Similarity=0.384 Sum_probs=317.9
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccc
Q 048351 115 LNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS 194 (850)
Q Consensus 115 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~ 194 (850)
+.+.+.++..|.+|++++|+++ +.|++++.+..++.|+.++|+++ .+|+.++.+.+|+.|+.++|.+ ...++.++
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~ 134 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL--KELPDSIG 134 (565)
T ss_pred ccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce--eecCchHH
Confidence 3455777888888888888887 57888888888888888888887 6788888888888888888875 33455677
Q ss_pred cCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhc
Q 048351 195 QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN 274 (850)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 274 (850)
.+..|..++..+|+++. .|..+..+.+|..+++.+|++...++ ...++ +.|++||...|.++.
T Consensus 135 ~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~-----~~i~m-~~L~~ld~~~N~L~t-------- 197 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPE-----NHIAM-KRLKHLDCNSNLLET-------- 197 (565)
T ss_pred HHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCH-----HHHHH-HHHHhcccchhhhhc--------
Confidence 88888888888888887 46677788888888888888887776 33334 788888888887764
Q ss_pred CCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCC
Q 048351 275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS 354 (850)
Q Consensus 275 l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~ 354 (850)
+|..++.+.+|+.|+|..|++. ..| .|.++..|++++++.|+|.-...+ ....++++.
T Consensus 198 ---lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae-----------------~~~~L~~l~ 255 (565)
T KOG0472|consen 198 ---LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAE-----------------HLKHLNSLL 255 (565)
T ss_pred ---CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHH-----------------Hhcccccce
Confidence 6666778888888888888887 566 678888888888888887633222 134778888
Q ss_pred EEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC-----CCCCcEEE
Q 048351 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL-----PSNAFYID 429 (850)
Q Consensus 355 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~-----~~~L~~L~ 429 (850)
+||+..|+++. .|+.+... .+|.+||+|+|.+++ .|..+ +. ..++.|.+.+|.+...--.. ..-|++|.
T Consensus 256 vLDLRdNklke-~Pde~clL-rsL~rLDlSNN~is~-Lp~sL-gn--lhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 256 VLDLRDNKLKE-VPDEICLL-RSLERLDLSNNDISS-LPYSL-GN--LHLKFLALEGNPLRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred eeecccccccc-CchHHHHh-hhhhhhcccCCcccc-CCccc-cc--ceeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence 88888888874 55555443 568888888888874 45444 33 35666777777654211100 00011110
Q ss_pred c--cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCcccccc---CccEEecc
Q 048351 430 L--SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ---KMLTLSLH 504 (850)
Q Consensus 430 L--s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~Ls 504 (850)
= ..-.++.. .. ..-..-+. ..+..| ......+.+.|+++.-+++ .+|+...... -....+++
T Consensus 330 s~~~~dglS~s--e~-----~~e~~~t~----~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 330 SKIKDDGLSQS--EG-----GTETAMTL----PSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HhhccCCCCCC--cc-----cccccCCC----CCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecc
Confidence 0 00000000 00 00000000 011111 1223455677777777776 4554432222 26677888
Q ss_pred CCccccCCchhhcCCCCcCe-eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcc
Q 048351 505 HNNFSGELPSLLKNFTHLRV-VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG 583 (850)
Q Consensus 505 ~N~l~~~~p~~l~~l~~L~~-L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 583 (850)
.|++. ++|..+..++.+.+ +++++|.++ .+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|.
T Consensus 397 kNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr- 471 (565)
T KOG0472|consen 397 KNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR- 471 (565)
T ss_pred cchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-
Confidence 88887 67776666665544 455555554 6776666 5888888888888876 67888888888888888888886
Q ss_pred cCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhh
Q 048351 584 NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEE 663 (850)
Q Consensus 584 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 663 (850)
.+|.++..+..+ +.+-.++|++....|+.
T Consensus 472 ~lP~~~y~lq~l---------------------------------------------------Etllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 472 MLPECLYELQTL---------------------------------------------------ETLLASNNQIGSVDPSG 500 (565)
T ss_pred cchHHHhhHHHH---------------------------------------------------HHHHhccccccccChHH
Confidence 666665443333 44555668887666666
Q ss_pred hhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351 664 IMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705 (850)
Q Consensus 664 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 705 (850)
+.+|.+|..|||.+|.+. .||+.++++++|++|++++|.+.
T Consensus 501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 888899999999999888 67888999999999999999888
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-37 Score=339.23 Aligned_cols=482 Identities=25% Similarity=0.276 Sum_probs=321.6
Q ss_pred EeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCC
Q 048351 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC 207 (850)
Q Consensus 128 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n 207 (850)
+|.+...+. .||..+-.-..++.|+++.|.+-...-+.....-+|+.||+++|++... +..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f--p~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF--PIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc--ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC--CchhhhHHHHhhcccchh
Confidence 456666655 4665554444466666666655432222333444466666666554221 222444555555555555
Q ss_pred CCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCC
Q 048351 208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287 (850)
Q Consensus 208 ~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~ 287 (850)
.|... |.+..++.+|++|.|.+|.+...+. ++..+ ++|++||++.|++.. +|..+..++.
T Consensus 79 ~i~~v---p~s~~~~~~l~~lnL~~n~l~~lP~-----~~~~l-knl~~LdlS~N~f~~-----------~Pl~i~~lt~ 138 (1081)
T KOG0618|consen 79 YIRSV---PSSCSNMRNLQYLNLKNNRLQSLPA-----SISEL-KNLQYLDLSFNHFGP-----------IPLVIEVLTA 138 (1081)
T ss_pred hHhhC---chhhhhhhcchhheeccchhhcCch-----hHHhh-hcccccccchhccCC-----------CchhHHhhhH
Confidence 55542 3444445555555555554444332 23333 444444554444432 3333344444
Q ss_pred CcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCC
Q 048351 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSI 367 (850)
Q Consensus 288 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 367 (850)
++.++.++|.... .++... ++.+++..|.+ .+.++..+..++. .|||.+|.+.. .
T Consensus 139 ~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l-----------------~~~~~~~i~~l~~--~ldLr~N~~~~-~ 193 (1081)
T KOG0618|consen 139 EEELAASNNEKIQ----RLGQTS-IKKLDLRLNVL-----------------GGSFLIDIYNLTH--QLDLRYNEMEV-L 193 (1081)
T ss_pred HHHHhhhcchhhh----hhcccc-chhhhhhhhhc-----------------ccchhcchhhhhe--eeecccchhhh-h
Confidence 4444444441111 111111 44444444444 3444445666666 79999998862 1
Q ss_pred chhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC-CCCCcEEEccCCcCcCccccccccC
Q 048351 368 PDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL-PSNAFYIDLSKNKFSGPISFLCSFS 446 (850)
Q Consensus 368 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~ 446 (850)
.+ ..+++|+.+....|++.... ...++++.|+.++|.++...+.. +.+++++++++|++++.....+ .
T Consensus 194 --dl-s~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~--~ 262 (1081)
T KOG0618|consen 194 --DL-SNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG--A 262 (1081)
T ss_pred --hh-hhccchhhhhhhhcccceEE------ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHH--h
Confidence 11 22367888888888887432 12277888999999998554443 7789999999999998775544 4
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCch-hhcCCCC-cCe
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS-LLKNFTH-LRV 524 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~-L~~ 524 (850)
+.+|+.++..+|+++ .+|..+....+|+.|++.+|.+. .+|...++++.|++|+|..|++. .+|+ .+.-... |+.
T Consensus 263 ~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 263 CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT 339 (1081)
T ss_pred cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence 589999999999996 78888888999999999999998 67778888999999999999998 4554 3333333 788
Q ss_pred eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS 604 (850)
Q Consensus 525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 604 (850)
|..+.|++. ..|..-....+.|+.|++.+|.++...-..+.+.+.|++|+|++|++......++.++..
T Consensus 340 ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~---------- 408 (1081)
T KOG0618|consen 340 LNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE---------- 408 (1081)
T ss_pred Hhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH----------
Confidence 888889887 677544445678999999999999877667888999999999999997433334444443
Q ss_pred ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351 605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 684 (850)
|+.|+||+|+++ .+|..+..+..|++|...+|++.. .
T Consensus 409 -----------------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-f 445 (1081)
T KOG0618|consen 409 -----------------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-F 445 (1081)
T ss_pred -----------------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-c
Confidence 488999999998 788999999999999999999984 5
Q ss_pred CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc
Q 048351 685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN 727 (850)
Q Consensus 685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 727 (850)
| .+.++++|+.+|+|.|+|+...-.....-++|++||+++|.
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5 89999999999999999985443333333899999999996
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=2.7e-35 Score=324.56 Aligned_cols=265 Identities=26% Similarity=0.296 Sum_probs=172.4
Q ss_pred CCcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEE
Q 048351 402 LESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478 (850)
Q Consensus 402 ~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 478 (850)
.+++.+++++|++++.+ .+ +.+++.++..+|.++....... ..++|+.|.+..|.++ -+|.....+++|++|+
T Consensus 241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 34444555555554443 22 4455566666666543322222 2367788888888887 5666677788888888
Q ss_pred cCCCcccccCCC-cccccc-CccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCc
Q 048351 479 LANNNFSGKIPN-SCGYLQ-KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR 556 (850)
Q Consensus 479 Ls~N~l~~~~p~-~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 556 (850)
|..|++. ..|+ .+..+. .|..|+.+.|++....-..=...+.|+.|.+.+|.+++..-+-+. +...|++|+|++|+
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNR 394 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccc
Confidence 8888887 3444 333333 367777777777632211223456688888888888754433333 57788888888888
Q ss_pred cccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcc
Q 048351 557 FYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSE 636 (850)
Q Consensus 557 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (850)
+.......+.+++.|+.|+||+|+++ .+|.++.++..|
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L----------------------------------------- 432 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL----------------------------------------- 432 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh-----------------------------------------
Confidence 87444445677888888888888887 666777666655
Q ss_pred cccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351 637 YEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716 (850)
Q Consensus 637 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (850)
++|...+|++. ..| ++.++++|+.+|+|.|+++...-..-..-++|++|||++|.-....-..|..+.
T Consensus 433 ----------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 433 ----------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLK 500 (1081)
T ss_pred ----------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhh
Confidence 56667777776 566 788888888888888888755332222237888999998875445556677777
Q ss_pred CCCEEEcCCC
Q 048351 717 RLSVMDLSHN 726 (850)
Q Consensus 717 ~L~~L~ls~N 726 (850)
++..+++.-|
T Consensus 501 ~l~~~~i~~~ 510 (1081)
T KOG0618|consen 501 SLSQMDITLN 510 (1081)
T ss_pred hhhheecccC
Confidence 7777777766
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.9e-34 Score=300.10 Aligned_cols=399 Identities=26% Similarity=0.379 Sum_probs=254.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351 120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL 199 (850)
Q Consensus 120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 199 (850)
+-|+..+-.|+++|.|+|...|.....+++++.|.|....+. .+|+.++.|.+|++|.+++|++...
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v------------ 70 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV------------ 70 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh------------
Confidence 345667778889999987778888888888888888888776 5788888888888888888775321
Q ss_pred cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCC
Q 048351 200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP 279 (850)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip 279 (850)
...+..+|.|+.+.+..|++ ... .+|
T Consensus 71 ----------------hGELs~Lp~LRsv~~R~N~L-----------------------------Kns---------GiP 96 (1255)
T KOG0444|consen 71 ----------------HGELSDLPRLRSVIVRDNNL-----------------------------KNS---------GIP 96 (1255)
T ss_pred ----------------hhhhccchhhHHHhhhcccc-----------------------------ccC---------CCC
Confidence 12233333333333333332 211 033
Q ss_pred CCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEcc
Q 048351 280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS 359 (850)
Q Consensus 280 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls 359 (850)
..+..+..|..||||+|++. ..|..+..-+++-.|+|++|+|..+
T Consensus 97 ~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetI---------------------------------- 141 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETI---------------------------------- 141 (1255)
T ss_pred chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccC----------------------------------
Confidence 33334444444444444444 3444444444444444444444321
Q ss_pred CCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcc
Q 048351 360 SAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPI 439 (850)
Q Consensus 360 ~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~ 439 (850)
|..++-.+..|-+||||+|++.. +|+.+ .
T Consensus 142 --------Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~-R----------------------------------------- 170 (1255)
T KOG0444|consen 142 --------PNSLFINLTDLLFLDLSNNRLEM-LPPQI-R----------------------------------------- 170 (1255)
T ss_pred --------CchHHHhhHhHhhhccccchhhh-cCHHH-H-----------------------------------------
Confidence 11111111223333333333331 11111 0
Q ss_pred ccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccc-ccCCCccccccCccEEeccCCccccCCchhhcC
Q 048351 440 SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS-GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKN 518 (850)
Q Consensus 440 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 518 (850)
.+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|+.+.+
T Consensus 171 ------RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 171 ------RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred ------HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 0123444444444443222222334556666666665432 257778888888888888888887 78888888
Q ss_pred CCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcc-cCCccccCcccCcc
Q 048351 519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG-NIPKCFNNFTAMTQ 597 (850)
Q Consensus 519 l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~ 597 (850)
+++|+.|+|++|+|+ .+..... ...+|++|++|.|+++ .+|.+++.++.|+.|.+.+|+++- -+|..++.+..|
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-- 318 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-- 318 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh--
Confidence 889999999999888 6766666 3678999999999998 789999999999999999998862 355555554444
Q ss_pred ccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCC
Q 048351 598 ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSR 677 (850)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 677 (850)
+.+..++|++. ..|+.++.+..|+.|.|++
T Consensus 319 -------------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 319 -------------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred -------------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 77888888887 8999999999999999999
Q ss_pred CcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC-----cCcccCCC
Q 048351 678 NNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN-----NLSGKIPT 734 (850)
Q Consensus 678 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N-----~l~g~iP~ 734 (850)
|++- ..|+.+.-++.|+.||+..|.---..|.--..-++|+.-|+..- ++-|..|.
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 9998 68999999999999999999755344443333356666555432 45565553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.7e-34 Score=299.60 Aligned_cols=370 Identities=25% Similarity=0.299 Sum_probs=278.7
Q ss_pred CEEEEEcCCCCCcccchhhhhccCCCCCCc-ccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 048351 83 HVKVLDLHGTGRVKVLDIQTRVMSGNASLR-GTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFS 161 (850)
Q Consensus 83 ~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~-g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~ 161 (850)
-|.++|+++ +.++ +.+|.....+++++.|.|...++. ++|+.++.|.+|++|.+++|++.
T Consensus 8 FVrGvDfsg-----------------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 8 FVRGVDFSG-----------------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI 68 (1255)
T ss_pred eeecccccC-----------------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH
Confidence 477888887 5677 578999999999999999999998 69999999999999999999988
Q ss_pred CCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCc
Q 048351 162 GPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTI 241 (850)
Q Consensus 162 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (850)
.+-..+..|+.|+.+++..|++...+.++.+..+..|+.||||+|++.. .|..+..-+++-.|+|++|+|...+.
T Consensus 69 -~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn- 143 (1255)
T KOG0444|consen 69 -SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPN- 143 (1255)
T ss_pred -hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCc-
Confidence 4556788999999999999999888888889999999999999999988 45677777777888888888776654
Q ss_pred cccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCc
Q 048351 242 HRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNS 321 (850)
Q Consensus 242 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 321 (850)
.-+.++ +.|-.||||+|++.. +|..+..+..|++|+|++|.+...--..+..+++|+.|.+++.+
T Consensus 144 ---~lfinL-tDLLfLDLS~NrLe~-----------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 144 ---SLFINL-TDLLFLDLSNNRLEM-----------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred ---hHHHhh-HhHhhhccccchhhh-----------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 333344 666777777777664 34445566677777777776654322334445556666666554
Q ss_pred cccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhcc
Q 048351 322 LEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401 (850)
Q Consensus 322 l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~ 401 (850)
-+-. .+|..+..+.+|..+|+|.|.+. ..|+.+.+. ++|+.|+||+|+|+..-.
T Consensus 209 RTl~----------------N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~iteL~~-------- 262 (1255)
T KOG0444|consen 209 RTLD----------------NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKITELNM-------- 262 (1255)
T ss_pred chhh----------------cCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCceeeeec--------
Confidence 3211 34555566666666666666654 345554443 355555555555542100
Q ss_pred CCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCC
Q 048351 402 LESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLAN 481 (850)
Q Consensus 402 ~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 481 (850)
... ...+|++|++|+|+++ .+|++++.++.|+.|.+.+
T Consensus 263 ---------------------------------------~~~--~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 263 ---------------------------------------TEG--EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ---------------------------------------cHH--HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 000 1267899999999998 8899999999999999999
Q ss_pred Ccccc-cCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccc
Q 048351 482 NNFSG-KIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK 560 (850)
Q Consensus 482 N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 560 (850)
|+++- -+|..++++..|+.+..++|.+. ..|+.+..|.+|+.|.|+.|++. ++|+.+- -++.|++||+..|.---.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCccC
Confidence 98762 47889999999999999999997 88999999999999999999998 8999887 589999999999875434
Q ss_pred cC
Q 048351 561 IP 562 (850)
Q Consensus 561 ~p 562 (850)
.|
T Consensus 378 PP 379 (1255)
T KOG0444|consen 378 PP 379 (1255)
T ss_pred CC
Confidence 44
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.9e-21 Score=239.89 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=71.3
Q ss_pred hhhcCCCCCcEEEccCCCCCCC--CCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEcc
Q 048351 217 QEVDKIPSLKTLYLEQCDLQLQ--PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLS 294 (850)
Q Consensus 217 ~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls 294 (850)
..|..+++|+.|.+..+..... .....+.++.....+|+.|++.++.+.. +|..+ ...+|+.|+++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----------lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----------MPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----------CCCcC-CccCCcEEECc
Confidence 4566667777776655432110 0000112333333456666666665542 34444 34566666666
Q ss_pred CCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhc
Q 048351 295 DNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDT 374 (850)
Q Consensus 295 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 374 (850)
+|++. .++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+...
T Consensus 620 ~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~------------------ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 620 GSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD------------------LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred Ccccc-ccccccccCCCCCEEECCCCCCcCcCCc------------------cccCCcccEEEecCCCCccccchhhhcc
Confidence 66665 4555556666666666666543332221 4445566666666655545555554332
Q ss_pred CcCCCEEecccCc
Q 048351 375 SHKLADLNFSHNQ 387 (850)
Q Consensus 375 ~~~L~~L~Ls~N~ 387 (850)
++|+.|++++|.
T Consensus 681 -~~L~~L~L~~c~ 692 (1153)
T PLN03210 681 -NKLEDLDMSRCE 692 (1153)
T ss_pred -CCCCEEeCCCCC
Confidence 355555555543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.3e-21 Score=239.39 Aligned_cols=341 Identities=21% Similarity=0.229 Sum_probs=200.0
Q ss_pred cccCCCCCCcEEEccCCCCCC-----CCCccccccC-CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCC
Q 048351 166 PLLGNLSRLQYLSLGYNKLLR-----AGNLDWISQL-FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQP 239 (850)
Q Consensus 166 ~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 239 (850)
.+|.++++|+.|.+..+.... ...+..+..+ .+|+.|++.++.+... |..+ ...+|++|++.+|.+....
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l---P~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM---PSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC---CCcC-CccCCcEEECcCccccccc
Confidence 446666667766665543110 0111223333 2466666666655553 2223 3455666666665554432
Q ss_pred CccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccC
Q 048351 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRG 319 (850)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 319 (850)
. +...+ ++|+.|+|+++..... +|. ++.+++|++|+|++|.....+|..++++++|+.|++++
T Consensus 628 ~-----~~~~l-~~Lk~L~Ls~~~~l~~----------ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 628 D-----GVHSL-TGLRNIDLRGSKNLKE----------IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred c-----ccccC-CCCCEEECCCCCCcCc----------CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 2 22233 5566666655442222 221 44455566666665554445555555666666666655
Q ss_pred CccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhh
Q 048351 320 NSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSM 399 (850)
Q Consensus 320 N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~ 399 (850)
|...+.+|. .+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+
T Consensus 691 c~~L~~Lp~-----------------~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~--- 744 (1153)
T PLN03210 691 CENLEILPT-----------------GI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL--- 744 (1153)
T ss_pred CCCcCccCC-----------------cC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc---
Confidence 432222221 11 3455555555555443333321 234555555555543 233222
Q ss_pred ccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCc---Ccc---ccccccCCCCccEEEccCCCCCCCCCcccccCCC
Q 048351 400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFS---GPI---SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNM 473 (850)
Q Consensus 400 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~---~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 473 (850)
.+++|++|++.++... +.. ........++|+.|++++|...+.+|..++++++
T Consensus 745 ---------------------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 745 ---------------------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred ---------------------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 1334444444432211 100 0001112368999999999887788999999999
Q ss_pred CCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR 553 (850)
Q Consensus 474 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 553 (850)
|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++. .+++|++|+++
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~ 877 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMN 877 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECC
Confidence 9999999986555777766 6889999999998766566653 367889999999998 8898887 69999999999
Q ss_pred CCccccccCcCcCCCCCcceeeccccc
Q 048351 554 SNRFYGKIPFQLCHLADIQILDLSLNN 580 (850)
Q Consensus 554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 580 (850)
+|+--..+|..+..+++|+.+++++|.
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCc
Confidence 855444677788888999999998875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.2e-21 Score=225.30 Aligned_cols=261 Identities=25% Similarity=0.347 Sum_probs=152.3
Q ss_pred CCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccC
Q 048351 353 FSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432 (850)
Q Consensus 353 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~ 432 (850)
-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. .+++|++|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--------------------------lp~~Lk~LdLs~ 251 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--------------------------LPPELRTLEVSG 251 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--------------------------CCCCCcEEEecC
Confidence 445666666665 3444432 245555665555552 332 334445555555
Q ss_pred CcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC
Q 048351 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL 512 (850)
Q Consensus 433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 512 (850)
|+++.. |.. .++|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|. .+++|+.|++++|++++ +
T Consensus 252 N~LtsL-P~l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 252 NQLTSL-PVL----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred CccCcc-cCc----ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-C
Confidence 554432 111 145666666666665 33332 244666666666666 3343 23566677777776663 3
Q ss_pred chhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCc
Q 048351 513 PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF 592 (850)
Q Consensus 513 p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 592 (850)
|.. ..+|+.|++++|+++ .+|.. ..+|++|++++|++++ +|.. ..+|+.|++++|++++ +|...
T Consensus 318 p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~--- 381 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP--- 381 (788)
T ss_pred CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---
Confidence 432 234666677777776 46631 2467777777777763 4432 2456677777777763 33211
Q ss_pred ccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCe
Q 048351 593 TAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIG 672 (850)
Q Consensus 593 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 672 (850)
..|+.|++++|+|++ +|.. .++|+.
T Consensus 382 ---------------------------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~ 406 (788)
T PRK15387 382 ---------------------------------------------------SGLKELIVSGNRLTS-LPVL---PSELKE 406 (788)
T ss_pred ---------------------------------------------------cccceEEecCCcccC-CCCc---ccCCCE
Confidence 123677778887774 4433 246777
Q ss_pred EecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351 673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 673 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
|++++|++++ +|... .+|+.|++++|+|+ .+|..+.+++.|++|++++|+|+|.+|.
T Consensus 407 LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 407 LMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred EEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 8888888774 55432 45677888888887 6777777788888888888888877664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=8e-22 Score=226.65 Aligned_cols=260 Identities=25% Similarity=0.344 Sum_probs=152.6
Q ss_pred cccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351 334 FSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH 413 (850)
Q Consensus 334 l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~ 413 (850)
++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|... .+|+.|++++|.
T Consensus 208 Ls~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~lp-----~sL~~L~Ls~N~ 273 (788)
T PRK15387 208 VGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVLP-----PGLLELSIFSNP 273 (788)
T ss_pred cCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCcc-----cccceeeccCCc
Confidence 3455555 5777665 489999999999986 443 24689999999999984 45433 566677777777
Q ss_pred CcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccc
Q 048351 414 LEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCG 493 (850)
Q Consensus 414 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 493 (850)
++.. |..+.+ |+.|++++|+++ .+|. ..++|+.|++++|++++ +|..
T Consensus 274 L~~L-p~lp~~-------------------------L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l-- 320 (788)
T PRK15387 274 LTHL-PALPSG-------------------------LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL-- 320 (788)
T ss_pred hhhh-hhchhh-------------------------cCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC--
Confidence 6642 223344 445555555554 2232 12445555555555553 2321
Q ss_pred cccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcce
Q 048351 494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI 573 (850)
Q Consensus 494 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 573 (850)
..+|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|++++ +|.. ..+|+.
T Consensus 321 -p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~ 386 (788)
T PRK15387 321 -PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKE 386 (788)
T ss_pred -cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccce
Confidence 1235555555555552 3321 135566666666665 45532 2355666666666653 4432 245666
Q ss_pred eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351 574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653 (850)
Q Consensus 574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 653 (850)
|++++|+|++ +|... +.|+.|++++
T Consensus 387 LdLs~N~Lt~-LP~l~------------------------------------------------------s~L~~LdLS~ 411 (788)
T PRK15387 387 LIVSGNRLTS-LPVLP------------------------------------------------------SELKELMVSG 411 (788)
T ss_pred EEecCCcccC-CCCcc------------------------------------------------------cCCCEEEccC
Confidence 7777776653 33211 1126677777
Q ss_pred CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccC
Q 048351 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQ 714 (850)
Q Consensus 654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 714 (850)
|++++ +|... .+|+.|++++|+++ .+|..+.++++|+.|+|++|+|++.+|..+..
T Consensus 412 N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 412 NRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 77763 45432 34666777777777 56777777777777777777777777666633
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-23 Score=209.72 Aligned_cols=90 Identities=24% Similarity=0.365 Sum_probs=53.6
Q ss_pred ccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCC
Q 048351 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN 546 (850)
Q Consensus 467 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~ 546 (850)
+|..+++|+.|+|++|+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|++|+|+ .+....|+.+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccce
Confidence 4566666666666666666665666666666666666666665444455666666666666666666 343344445556
Q ss_pred CCEEEccCCcc
Q 048351 547 LVVLDLRSNRF 557 (850)
Q Consensus 547 L~~L~L~~N~l 557 (850)
|.+|++-.|.+
T Consensus 348 l~~l~l~~Np~ 358 (498)
T KOG4237|consen 348 LSTLNLLSNPF 358 (498)
T ss_pred eeeeehccCcc
Confidence 66666655554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-22 Score=203.86 Aligned_cols=277 Identities=22% Similarity=0.200 Sum_probs=147.5
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccC-CccccCCchhhcCCCCcCeecc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHH-NNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 527 (850)
.-+.++|..|+|+...|.+|+.+++|+.|||++|.|+.+-|++|.++.+|.+|-+.+ |+|+......|.++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677777777766666777777777777777777766777777777666665554 7777555566777777777777
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc------------ccCCccccCcccC
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS------------GNIPKCFNNFTAM 595 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L 595 (850)
.-|++. .++...+..+++|..|.+.+|.+...--..|..+.+++.+.+..|.+- ...|..++.....
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 777776 566555556777777777777776443346667777777777776632 1112222222221
Q ss_pred ccccccCccccccccccC-CCcccCccceE-eeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeE
Q 048351 596 TQERSYNSSAITFSYAVP-SRTTMLPVHIF-FDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGL 673 (850)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 673 (850)
.....+............ .....++.+.. .+.+. .......++.+++|+.|+|++|+++++-+.+|.++..+++|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d---~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD---SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC---CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 111111000000000000 00000000000 00000 00011123455555555555555555555555555555555
Q ss_pred ecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351 674 NLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 674 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 729 (850)
.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|.+|+|-.|++.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 55555555444455555555555555555555555555555555555555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.1e-19 Score=210.77 Aligned_cols=181 Identities=23% Similarity=0.342 Sum_probs=111.6
Q ss_pred CCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEcc
Q 048351 377 KLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLS 456 (850)
Q Consensus 377 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls 456 (850)
+...|+++++.++ .+|..+ . ..++.|++++|+++..+...+.+|++|++++|+++...... . .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p-~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l-~---~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---P-EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL-P---DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---c-cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh-h---ccccEEECc
Confidence 5678888888887 355433 1 56777888888877655545667777777777766432211 1 357777777
Q ss_pred CCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeec
Q 048351 457 SNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNI 536 (850)
Q Consensus 457 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i 536 (850)
+|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++ .+
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cC
Confidence 77776 4555443 46777777777776 3555443 467777777777663 444332 35666777777766 45
Q ss_pred chhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc
Q 048351 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582 (850)
Q Consensus 537 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 582 (850)
|..+ .++|++|++++|.+++ +|..+. ++|+.|++++|+|+
T Consensus 320 P~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 320 PETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred Cccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 5443 2466666666666663 454442 46666666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=8.2e-20 Score=211.80 Aligned_cols=292 Identities=22% Similarity=0.345 Sum_probs=196.7
Q ss_pred CCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEc
Q 048351 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430 (850)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~L 430 (850)
.+...|++++++++. +|..+. +.++.|++++|+++. +|..+ . .+|+.|++++|+++..+...+.+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip---~~L~~L~Ls~N~Lts-LP~~l---~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP---EQITTLILDNNELKS-LPENL---Q-GNIKTLYANSNQLTSIPATLPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc---cCCcEEEecCCCCCc-CChhh---c-cCCCEEECCCCccccCChhhhccccEEEC
Confidence 456788898888875 555442 468899999998884 55433 1 57888999999988655455678899999
Q ss_pred cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcccc
Q 048351 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG 510 (850)
Q Consensus 431 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 510 (850)
++|.+... |.... .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++.
T Consensus 249 s~N~L~~L-P~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRITEL-PERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccCcC-ChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 99988743 32221 57899999999888 4666553 579999999998884 555442 478889999999884
Q ss_pred CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN 590 (850)
Q Consensus 511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 590 (850)
+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+++ .+|..+ .++|+.|++++|+++ .+|..+.
T Consensus 319 -LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 319 -LPETLP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred -CCcccc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH
Confidence 555442 68889999999988 688765 368999999999887 466655 367888888888887 3443321
Q ss_pred CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhh----c
Q 048351 591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM----D 666 (850)
Q Consensus 591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~ 666 (850)
..|+.|++++|+++ .+|..+. .
T Consensus 388 -----------------------------------------------------~sL~~LdLs~N~L~-~LP~sl~~~~~~ 413 (754)
T PRK15370 388 -----------------------------------------------------AALQIMQASRNNLV-RLPESLPHFRGE 413 (754)
T ss_pred -----------------------------------------------------HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence 12367888888887 4455443 3
Q ss_pred cccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc-cCcccccCCCCCCEEEcCCCcCcccCC
Q 048351 667 LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG-GIPSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 667 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
++.+..|++.+|.++. ..+.+|+.| ++.+...| .++..+.....++....-.+...+-+|
T Consensus 414 ~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~ 474 (754)
T PRK15370 414 GPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWLT 474 (754)
T ss_pred CCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccccccchHHHHHhccCC
Confidence 4677788888888762 233444445 34444433 334444444444443333444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.3e-18 Score=188.11 Aligned_cols=213 Identities=21% Similarity=0.262 Sum_probs=108.1
Q ss_pred cccCCCCCEEEcCCCcccccCCCccccccC---ccEEeccCCcccc----CCchhhcCC-CCcCeeccccccceeec---
Q 048351 468 WLQFNMLRILNLANNNFSGKIPNSCGYLQK---MLTLSLHHNNFSG----ELPSLLKNF-THLRVVALEENSISGNI--- 536 (850)
Q Consensus 468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~i--- 536 (850)
+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344445555555555554333333333333 5555555555542 122233444 55666666666555322
Q ss_pred -chhHHhcCCCCCEEEccCCccccc----cCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccc
Q 048351 537 -PAWIGESLLNLVVLDLRSNRFYGK----IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYA 611 (850)
Q Consensus 537 -p~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~ 611 (850)
+..+. .+++|++|++++|.+++. ++..+...++|+.|++++|.+++.....+..
T Consensus 157 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------------- 215 (319)
T cd00116 157 LAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-------------------- 215 (319)
T ss_pred HHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH--------------------
Confidence 22222 345566666666666532 2223334456666666666665322111100
Q ss_pred cCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhc-----cccCCeEecCCCcCcc----
Q 048351 612 VPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-----LVGLIGLNLSRNNLTG---- 682 (850)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~---- 682 (850)
....++.|+.|++++|.+++.....+.. .+.|+.|++++|.++.
T Consensus 216 ---------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 216 ---------------------------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred ---------------------------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 0112234466777777766533333332 2577777777777752
Q ss_pred CCCccccccCCCCeeeCCCCcCccc----CcccccCC-CCCCEEEcCCCcC
Q 048351 683 YITPKIGQLQSLDFLDLSRNQFSGG----IPSSLSQV-NRLSVMDLSHNNL 728 (850)
Q Consensus 683 ~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 728 (850)
.+...+..+++|+.+|+++|.++.. ....+... +.|+++|+.+|++
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1233455556777777777777744 33334444 5677777777654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.6e-18 Score=187.47 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=45.3
Q ss_pred EEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CCcccCCCCCCcEEEccCCCCCC-CC----CccccccCC
Q 048351 127 HLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGP----IPPLLGNLSRLQYLSLGYNKLLR-AG----NLDWISQLF 197 (850)
Q Consensus 127 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~-~~----~~~~l~~l~ 197 (850)
.|+|..+.+++...+..+..+++|++|+++++.+++. ++..+...++|++|+++++.+.. .. ....+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666666444555555566677777776666432 34445556666666666665321 00 012244455
Q ss_pred CccEEeCCCCCCC
Q 048351 198 SLRYLDLSSCNLS 210 (850)
Q Consensus 198 ~L~~L~Ls~n~l~ 210 (850)
+|++|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~ 94 (319)
T cd00116 82 GLQELDLSDNALG 94 (319)
T ss_pred ceeEEEccCCCCC
Confidence 5666666655554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.1e-18 Score=154.59 Aligned_cols=85 Identities=28% Similarity=0.539 Sum_probs=47.3
Q ss_pred cccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcce
Q 048351 494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI 573 (850)
Q Consensus 494 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 573 (850)
.+...+.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3445555556666655 44444555555555555555555 5555554 3555555555555554 45555555555555
Q ss_pred eecccccCc
Q 048351 574 LDLSLNNIS 582 (850)
Q Consensus 574 L~Ls~N~l~ 582 (850)
|||++|++.
T Consensus 107 ldltynnl~ 115 (264)
T KOG0617|consen 107 LDLTYNNLN 115 (264)
T ss_pred hhccccccc
Confidence 555555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=4.8e-18 Score=152.36 Aligned_cols=163 Identities=26% Similarity=0.450 Sum_probs=100.8
Q ss_pred cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351 470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV 549 (850)
Q Consensus 470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~ 549 (850)
++..++.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. .+|..++ .++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhh
Confidence 3445555566666665 45555666666666666666665 55666666666666666666665 6666666 4666777
Q ss_pred EEccCCcccc-ccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEE
Q 048351 550 LDLRSNRFYG-KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628 (850)
Q Consensus 550 L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (850)
||+.+|++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l--------------------------------- 152 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL--------------------------------- 152 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce---------------------------------
Confidence 7777666642 45666667777777777777775 445544444444
Q ss_pred EEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccc
Q 048351 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ 690 (850)
Q Consensus 629 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 690 (850)
+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|+.+++
T Consensus 153 ------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 153 ------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred ------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 45555555554 56666666666666666666666 45554443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=5.4e-15 Score=171.59 Aligned_cols=117 Identities=37% Similarity=0.665 Sum_probs=105.2
Q ss_pred ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725 (850)
Q Consensus 646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 725 (850)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++||+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCCCC--cCCCcCccccCCCCCCCCCCCCCCCC
Q 048351 726 NNLSGKIPTGT--QLQSFNASVYDGNPELCGLPLPSKCW 762 (850)
Q Consensus 726 N~l~g~iP~~~--~~~~~~~~~~~gN~~lc~~~~~~~c~ 762 (850)
|+++|.+|..- .+.......+.||+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999752 12233455689999999977555664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=4.2e-14 Score=164.21 Aligned_cols=128 Identities=35% Similarity=0.550 Sum_probs=107.8
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCc----cccceEecC--CC--CCEEEEEcCCCCCcccchhhhhc
Q 048351 33 IRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCC----NWRGVRCSN--QT--GHVKVLDLHGTGRVKVLDIQTRV 104 (850)
Q Consensus 33 ~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c----~w~gv~C~~--~~--~~v~~l~L~~~~~l~~l~l~~~~ 104 (850)
..+.++|.+||+++|+++.++.. .+|. +..|| .|.||+|+. .. .+|+.++|++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~------------- 427 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN------------- 427 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC-------------
Confidence 35677899999999999876532 4795 33443 799999952 22 2588999987
Q ss_pred cCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCC
Q 048351 105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184 (850)
Q Consensus 105 ~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 184 (850)
+.+.|.+|++++.+++|++|+|++|.++|. +|..++.+++|++|+|++|+++|.+|..++++++|++|+|++|++
T Consensus 428 ----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 428 ----QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred ----CCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 588999999999999999999999999986 999999999999999999999999999999999999999988875
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=8.5e-14 Score=147.69 Aligned_cols=195 Identities=25% Similarity=0.453 Sum_probs=144.8
Q ss_pred CCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEE
Q 048351 471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550 (850)
Q Consensus 471 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L 550 (850)
+.--...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|+++||+.|+++ .+|..++ .+ -|+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeE
Confidence 444557788888887 77888888888888888888887 77888888888888888888887 7888877 34 48888
Q ss_pred EccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEE
Q 048351 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLL 630 (850)
Q Consensus 551 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (850)
-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------- 191 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------- 191 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence 88888887 67777888888888888888886 455555444444
Q ss_pred EecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcc
Q 048351 631 TWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPS 710 (850)
Q Consensus 631 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (850)
+.|.+..|++. ..|+++..|+ |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|+ ..|.
T Consensus 192 ----------------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 192 ----------------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred ----------------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 66777777777 5667777554 777888888888 67888888888888888888887 4444
Q ss_pred ccc---CCCCCCEEEcCCCc
Q 048351 711 SLS---QVNRLSVMDLSHNN 727 (850)
Q Consensus 711 ~l~---~l~~L~~L~ls~N~ 727 (850)
.+. ...-.++|+..-.+
T Consensus 252 qIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 252 QICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhccceeeeeeecchhcc
Confidence 432 23345666666553
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.6e-13 Score=145.56 Aligned_cols=196 Identities=28% Similarity=0.428 Sum_probs=157.7
Q ss_pred CCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351 446 SGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 525 (850)
.+..-...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..+..+..|+++||+.|+++ .+|..+..|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3455567889999988 78888888888999999999887 78888899999999999999998 6787777775 8899
Q ss_pred ccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605 (850)
Q Consensus 526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 605 (850)
.+++|+++ .+|..++ .+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..++
T Consensus 149 i~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------ 212 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------ 212 (722)
T ss_pred EEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc------------
Confidence 99999997 8998888 7888999999999987 67778889999999999999887 4454443222
Q ss_pred cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
|..||+|+|+++ .+|-.|.+|+.|++|-|.+|.++. .|
T Consensus 213 ----------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PP 250 (722)
T KOG0532|consen 213 ----------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PP 250 (722)
T ss_pred ----------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-Ch
Confidence 267999999998 889999999999999999999983 55
Q ss_pred ccc---cccCCCCeeeCCCCc
Q 048351 686 PKI---GQLQSLDFLDLSRNQ 703 (850)
Q Consensus 686 ~~l---~~l~~L~~L~Ls~N~ 703 (850)
..+ +...--++|+..-++
T Consensus 251 AqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHHhccceeeeeeecchhcc
Confidence 444 333445677776664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=8.2e-12 Score=139.00 Aligned_cols=199 Identities=35% Similarity=0.538 Sum_probs=109.5
Q ss_pred EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCcccccc-CccEEeccCCccccCCchhhcCCCCcCeeccccc
Q 048351 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ-KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530 (850)
Q Consensus 452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 530 (850)
.++++.|.+...+ .....++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566666553222 22334456667777777666 4444455553 6777777777666 45455666777777777777
Q ss_pred cceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccccc
Q 048351 531 SISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSY 610 (850)
Q Consensus 531 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 610 (850)
+++ .+|.... ..++|+.|++++|++. .+|.....+..|+++++++|++. ..+..+.+++.+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l--------------- 234 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--------------- 234 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence 776 5665543 3566667777777666 44444444455666666666422 222222222222
Q ss_pred ccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccc
Q 048351 611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ 690 (850)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 690 (850)
..+.+++|++. .++..++.++.++.|++++|.++.. +. ++.
T Consensus 235 ------------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~ 275 (394)
T COG4886 235 ------------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGS 275 (394)
T ss_pred ------------------------------------cccccCCceee-eccchhccccccceecccccccccc-cc-ccc
Confidence 33445555554 2244555555566666666666533 22 555
Q ss_pred cCCCCeeeCCCCcCcccCccc
Q 048351 691 LQSLDFLDLSRNQFSGGIPSS 711 (850)
Q Consensus 691 l~~L~~L~Ls~N~l~~~~p~~ 711 (850)
+.+++.||+++|.++...|..
T Consensus 276 ~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 276 LTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cCccCEEeccCccccccchhh
Confidence 566666666666655444443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1e-11 Score=138.21 Aligned_cols=200 Identities=34% Similarity=0.489 Sum_probs=162.3
Q ss_pred CEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCC-CcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT-HLRVVALEENSISGNIPAWIGESLLNLVVLDLR 553 (850)
Q Consensus 475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 553 (850)
..+++..|.+...+ ..+..++.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 46888888875332 34455688999999999999 5666666674 9999999999998 8876776 69999999999
Q ss_pred CCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEec
Q 048351 554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK 633 (850)
Q Consensus 554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (850)
+|+++ .+|...+.++.|+.|++++|+++ .+|......
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~----------------------------------------- 208 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL----------------------------------------- 208 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh-----------------------------------------
Confidence 99998 55655558899999999999998 444432211
Q ss_pred CcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccccc
Q 048351 634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713 (850)
Q Consensus 634 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 713 (850)
..|++|++++|++. .++..+..+..+..|.+++|++.. ++..++.++++++|++++|+++...+ +.
T Consensus 209 ----------~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~ 274 (394)
T COG4886 209 ----------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LG 274 (394)
T ss_pred ----------hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--cc
Confidence 22478999999654 677889999999999999999984 47789999999999999999995544 89
Q ss_pred CCCCCCEEEcCCCcCcccCCCC
Q 048351 714 QVNRLSVMDLSHNNLSGKIPTG 735 (850)
Q Consensus 714 ~l~~L~~L~ls~N~l~g~iP~~ 735 (850)
.+.+++.|++++|.++...|..
T Consensus 275 ~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 275 SLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCccCEEeccCccccccchhh
Confidence 9999999999999999776654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.8e-11 Score=125.22 Aligned_cols=190 Identities=28% Similarity=0.285 Sum_probs=127.0
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCC--cccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351 120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIP--PLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF 197 (850)
Q Consensus 120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 197 (850)
.++.+|+...|.+..+....+......|++++.||||.|-|..-.| .....|++|+.|+|+.|++........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5678888888888877632121356778999999999998874333 34567889999999999864332222233677
Q ss_pred CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS 277 (850)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ 277 (850)
+|+.|.|+.|.++. .++...+..+|+|+.|+|..|....... ...... ..|+.|||++|++...- +
T Consensus 198 ~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~-~~L~~LdLs~N~li~~~-~------- 263 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKA----TSTKIL-QTLQELDLSNNNLIDFD-Q------- 263 (505)
T ss_pred hhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceec----chhhhh-hHHhhccccCCcccccc-c-------
Confidence 88888898888873 3455566678888888888885221111 122222 67888888888876421 0
Q ss_pred CCCCCCCCCCCcEEEccCCcCCcc-cchh-----hhcCCCCcEEEccCCcccc
Q 048351 278 IPDAPGPMISLRTLTLSDNELDGE-IPKF-----FQNMFKLEGLSLRGNSLEG 324 (850)
Q Consensus 278 ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~ 324 (850)
. ...+.++.|+.|+++.+.+... +|+. ...+++|++|++..|++..
T Consensus 264 ~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 264 G-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred c-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 0 2256778888888888887642 2332 3467788888888888753
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4e-11 Score=124.02 Aligned_cols=64 Identities=28% Similarity=0.176 Sum_probs=27.1
Q ss_pred CCCCCCEEeCCCCCCCCCCC--cccCCCCCCcEEEccCCCCCCCCCc-cccccCCCccEEeCCCCCCC
Q 048351 146 SLSKLEYLDLFAASFSGPIP--PLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLS 210 (850)
Q Consensus 146 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~l~~L~~L~Ls~n~l~ 210 (850)
++.+|+...|.++.... .+ .....|++++.||||+|-+...... .....+++|+.|+++.|++.
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 44555555555544431 11 1334455555555555543221111 11234444444444444443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=5.7e-11 Score=116.65 Aligned_cols=83 Identities=29% Similarity=0.331 Sum_probs=55.1
Q ss_pred ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccC-cccccCCCCCCEEEcC
Q 048351 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGI-PSSLSQVNRLSVMDLS 724 (850)
Q Consensus 646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls 724 (850)
|+.||||+|.++ .+...-..+-+.+.|+|+.|.+... ..++++-+|..||+++|+|.... -..+++++-|+++.+.
T Consensus 331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 366777777666 3444444566677777777777644 45667777777777777776332 2356777888888888
Q ss_pred CCcCccc
Q 048351 725 HNNLSGK 731 (850)
Q Consensus 725 ~N~l~g~ 731 (850)
+|++.+.
T Consensus 408 ~NPl~~~ 414 (490)
T KOG1259|consen 408 GNPLAGS 414 (490)
T ss_pred CCCcccc
Confidence 8888754
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=3.9e-11 Score=120.93 Aligned_cols=228 Identities=22% Similarity=0.203 Sum_probs=143.2
Q ss_pred ccccccCCCCCCEEeCCCCCCCCC---CCCc-------ccCCCCCCCEEeCCCCCCCCCCCcc----cCCCCCCcEEEcc
Q 048351 115 LNPALLKLHYLRHLDLSFNNFSGS---QIPM-------FIGSLSKLEYLDLFAASFSGPIPPL----LGNLSRLQYLSLG 180 (850)
Q Consensus 115 l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~-------~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls 180 (850)
+.+.+.+.+.|+.-++|+- ++|. .+|+ .+-.+++|++||||+|.|.-.-+.. +..++.|++|.|.
T Consensus 50 i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN 128 (382)
T ss_pred HHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence 3455666777777777753 2331 1332 2334567888888888776443332 4567788888888
Q ss_pred CCCCCCCCCc------------cccccCCCccEEeCCCCCCCCC--cchhhhhcCCCCCcEEEccCCCCCCCCCcccccc
Q 048351 181 YNKLLRAGNL------------DWISQLFSLRYLDLSSCNLSKS--TDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFS 246 (850)
Q Consensus 181 ~N~l~~~~~~------------~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 246 (850)
+|.+-....- ...+.-+.|+++..+.|++... ..+...+...+.|+.+.+..|.+..........+
T Consensus 129 N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 129 NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 7765221111 1134456788888888888765 2345567778889999999888865443333345
Q ss_pred ccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh-----cCCCCcEEEccCCc
Q 048351 247 HLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ-----NMFKLEGLSLRGNS 321 (850)
Q Consensus 247 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~ 321 (850)
+..+ ++|++|||.+|-++...... +...+..+++|+.|++++|.+...-...|. ..++|+.|.+.+|.
T Consensus 209 l~~~-~~LevLdl~DNtft~egs~~------LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 209 LEHC-PHLEVLDLRDNTFTLEGSVA------LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHhC-CcceeeecccchhhhHHHHH------HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 5666 88999999999887543222 234456677899999999988754443332 46789999999998
Q ss_pred cccccccccccccccccCCCCCChhccCCCCCCEEEccCCcC
Q 048351 322 LEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI 363 (850)
Q Consensus 322 l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l 363 (850)
++...... +-..+...+.|..|+|++|.+
T Consensus 282 It~da~~~-------------la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 282 ITRDAALA-------------LAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hHHHHHHH-------------HHHHHhcchhhHHhcCCcccc
Confidence 87432221 011134456666666666666
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=2.9e-11 Score=121.85 Aligned_cols=259 Identities=22% Similarity=0.251 Sum_probs=137.8
Q ss_pred cccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCC----CCCc-------ccCCCCCCcEEEccC
Q 048351 116 NPALLKLHYLRHLDLSFNNFSGS---QIPMFIGSLSKLEYLDLFAASFSG----PIPP-------LLGNLSRLQYLSLGY 181 (850)
Q Consensus 116 ~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~ 181 (850)
-+.+.....+++++||+|.|... .+...+.+.++|+..++|+- ++| .+|+ ++..+++|++||||.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34566778899999999988632 13345667788999888764 333 3443 345566888888888
Q ss_pred CCCCCCCCcc---ccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEE
Q 048351 182 NKLLRAGNLD---WISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLG 258 (850)
Q Consensus 182 N~l~~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 258 (850)
|.+-..+... .+..++.|++|.|.+|.+..... ..++. -|..|. .+ .....- +.|+++.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag--~~l~~--al~~l~--~~-----------kk~~~~-~~Lrv~i 163 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG--GRLGR--ALFELA--VN-----------KKAASK-PKLRVFI 163 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH--HHHHH--HHHHHH--HH-----------hccCCC-cceEEEE
Confidence 8763333221 24556666666666666543210 00000 000000 00 011111 5566666
Q ss_pred ccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc----ccchhhhcCCCCcEEEccCCcccccccccccccc
Q 048351 259 LSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG----EIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNF 334 (850)
Q Consensus 259 Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l 334 (850)
..+|++...-... +...|...+.|+.+.++.|.|.. .+...|..+++|+.|||.+|-++.....
T Consensus 164 ~~rNrlen~ga~~------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~------ 231 (382)
T KOG1909|consen 164 CGRNRLENGGATA------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV------ 231 (382)
T ss_pred eeccccccccHHH------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH------
Confidence 6666654321111 12234445566666666666542 1223455666677777766666533221
Q ss_pred ccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhH----hhcCcCCCEEecccCcCcccCC----hhhhhhccCCcCE
Q 048351 335 SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWF----SDTSHKLADLNFSHNQMTGRFP----NYISSMFILESPG 406 (850)
Q Consensus 335 ~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~L~~ 406 (850)
.+...+..+++|+.|++++|.+.......+ ....|+|+.+.+.+|.++...- ..+ .. .+.+..
T Consensus 232 -------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~-~e-k~dL~k 302 (382)
T KOG1909|consen 232 -------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM-AE-KPDLEK 302 (382)
T ss_pred -------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH-hc-chhhHH
Confidence 112224455666677777666665433332 3334567777777776653221 111 11 266667
Q ss_pred EEccCCcC
Q 048351 407 IDISSNHL 414 (850)
Q Consensus 407 L~l~~N~l 414 (850)
|++++|.+
T Consensus 303 LnLngN~l 310 (382)
T KOG1909|consen 303 LNLNGNRL 310 (382)
T ss_pred hcCCcccc
Confidence 77777777
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=3.8e-10 Score=107.30 Aligned_cols=131 Identities=31% Similarity=0.347 Sum_probs=44.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc-ccC
Q 048351 119 LLKLHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI-SQL 196 (850)
Q Consensus 119 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l-~~l 196 (850)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.++.. + .+..+++|++|++++|++.... +.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSIS--EGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C--HHHHHH-
T ss_pred ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccc--cchHHhC
Confidence 4455678889999998874 3 2454 578888899998888853 2 4777888888888888864432 223 357
Q ss_pred CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEc
Q 048351 197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGL 259 (850)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L 259 (850)
++|++|++++|+|....+ ...+..+++|+.|+|.+|.++.... +...-+..+ |+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~l-P~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKL-PSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH--TT-SEETT
T ss_pred CcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhh-HHHHHHHHc-ChhheeCC
Confidence 888888888888877643 3556677777777777777654321 111222233 55665553
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=5.2e-10 Score=106.37 Aligned_cols=121 Identities=30% Similarity=0.402 Sum_probs=35.7
Q ss_pred CCccEEEccCCCCCCCCCcccc-cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhh-cCCCCcCee
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWL-QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLL-KNFTHLRVV 525 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L 525 (850)
.++++|+|++|.|+. +. .++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++. +...+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 456677777777762 22 233 456677777777777632 245566677777777777763 33223 346667777
Q ss_pred ccccccceeecch--hHHhcCCCCCEEEccCCccccccC---cCcCCCCCcceee
Q 048351 526 ALEENSISGNIPA--WIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILD 575 (850)
Q Consensus 526 ~L~~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ 575 (850)
++++|+|. .+.. .+. .+++|++|++.+|.++...- ..+..+|+|+.||
T Consensus 94 ~L~~N~I~-~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKIS-DLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS----SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCC-ChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777665 2221 122 46666666666666653210 1244556666665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=4e-10 Score=110.80 Aligned_cols=139 Identities=27% Similarity=0.334 Sum_probs=106.5
Q ss_pred CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN 590 (850)
Q Consensus 511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 590 (850)
..-..+.....|+.+||++|.|+ .|.+.+- -.|.++.|++++|.+...- .+..+++|+.||||+|.++.. ...
T Consensus 275 ~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gw-- 347 (490)
T KOG1259|consen 275 SALVSADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGW-- 347 (490)
T ss_pred ceEEecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhh--
Confidence 33334445677899999999998 8888775 5789999999999998433 378899999999999988721 110
Q ss_pred CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccC
Q 048351 591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL 670 (850)
Q Consensus 591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 670 (850)
...+.+++.|.|++|.+.. -..++.+-+|
T Consensus 348 -------------------------------------------------h~KLGNIKtL~La~N~iE~--LSGL~KLYSL 376 (490)
T KOG1259|consen 348 -------------------------------------------------HLKLGNIKTLKLAQNKIET--LSGLRKLYSL 376 (490)
T ss_pred -------------------------------------------------HhhhcCEeeeehhhhhHhh--hhhhHhhhhh
Confidence 0133445889999998853 3567888999
Q ss_pred CeEecCCCcCccCC-CccccccCCCCeeeCCCCcCccc
Q 048351 671 IGLNLSRNNLTGYI-TPKIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 671 ~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
..||+++|+|...- -..+++++.|+.+.|-+|.+.+.
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99999999997542 25789999999999999999854
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.84 E-value=3.8e-09 Score=75.33 Aligned_cols=40 Identities=48% Similarity=0.978 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCCCC-CCCCccccceEec
Q 048351 37 EEERKALLKFKQGLV-DEFGFLSSWGSEGE-KKDCCNWRGVRCS 78 (850)
Q Consensus 37 ~~~~~~Ll~~k~~~~-~~~~~l~~W~~~~~-~~~~c~w~gv~C~ 78 (850)
++|++||++||+++. +|.+.+.+|+. . ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 689999999999998 57789999984 2 2799999999995
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.6e-10 Score=125.05 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=56.0
Q ss_pred ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc---Cccc-ccCCCCCCEE
Q 048351 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG---IPSS-LSQVNRLSVM 721 (850)
Q Consensus 646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L 721 (850)
|+.+++++|.+. .++..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ....+.+...
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 577888888876 4445566777788888888887755 4455667777777777776621 1111 4445677777
Q ss_pred EcCCCcCcccCC
Q 048351 722 DLSHNNLSGKIP 733 (850)
Q Consensus 722 ~ls~N~l~g~iP 733 (850)
.+.+|......+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777777765444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.4e-09 Score=83.57 Aligned_cols=60 Identities=38% Similarity=0.521 Sum_probs=41.2
Q ss_pred cCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcC
Q 048351 669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNL 728 (850)
Q Consensus 669 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 728 (850)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777777765556667777777777777777766666677777777777777654
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=1.4e-09 Score=121.19 Aligned_cols=57 Identities=33% Similarity=0.413 Sum_probs=30.0
Q ss_pred CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 729 (850)
|+.+++++|.+. .++..+..+..+..||+++|++... ..+.....+..+....|.+.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 556666666665 2334455556666666666665533 22334444555555555544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=5e-09 Score=81.81 Aligned_cols=61 Identities=39% Similarity=0.515 Sum_probs=56.9
Q ss_pred ccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcC
Q 048351 644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704 (850)
Q Consensus 644 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 704 (850)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3579999999999988778999999999999999999988889999999999999999986
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=1.5e-07 Score=112.20 Aligned_cols=111 Identities=36% Similarity=0.465 Sum_probs=84.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCC
Q 048351 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFS 198 (850)
Q Consensus 119 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 198 (850)
|..++.|++|||++|.=-+ .+|.+++.|-+||+|+|+++.+. .+|..+++|.+|.+|++..+...... +.....+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhccc
Confidence 6779999999999975433 69999999999999999999998 78999999999999999987642222 344566999
Q ss_pred ccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccC
Q 048351 199 LRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQ 232 (850)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 232 (850)
||+|.+..............+..+.+|+.+....
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999997765433323345556666666665543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=7.7e-09 Score=113.37 Aligned_cols=107 Identities=28% Similarity=0.297 Sum_probs=77.0
Q ss_pred cccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEE
Q 048351 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMD 722 (850)
Q Consensus 643 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 722 (850)
++.++.||||+|+++.. +.+..++.|+.|||++|.++...--....+. |+.|.+++|.++.. ..+.+|.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 44558899999999744 2788899999999999999854332333444 99999999998854 4678889999999
Q ss_pred cCCCcCcccCCC--CCcCCCcCccccCCCCCCCC
Q 048351 723 LSHNNLSGKIPT--GTQLQSFNASVYDGNPELCG 754 (850)
Q Consensus 723 ls~N~l~g~iP~--~~~~~~~~~~~~~gN~~lc~ 754 (850)
+|+|-|++.--- ...+..+....++|||.-|.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999988764111 01223344556889998885
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.1e-08 Score=112.07 Aligned_cols=180 Identities=29% Similarity=0.258 Sum_probs=107.6
Q ss_pred CCccccccCccEEeccCCccccCCchhhcCC-CCcCeeccccccce----------eecchhHHhcCCCCCEEEccCCcc
Q 048351 489 PNSCGYLQKMLTLSLHHNNFSGELPSLLKNF-THLRVVALEENSIS----------GNIPAWIGESLLNLVVLDLRSNRF 557 (850)
Q Consensus 489 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~----------~~ip~~~~~~l~~L~~L~L~~N~l 557 (850)
|-.+..+.+|++|.+.++.+.. .- .+..+ .+|++|.- .|.+. |.+..... ...|.+.+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 4556778899999999999873 11 11111 12333321 11111 12211111 23566777777877
Q ss_pred ccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccc
Q 048351 558 YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY 637 (850)
Q Consensus 558 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (850)
. ....++.-++.|+.|||++|+++..- .
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~------------------------------------------------- 204 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--N------------------------------------------------- 204 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--H-------------------------------------------------
Confidence 6 44556666777888888888876211 1
Q ss_pred ccccccccccEEEcCCCCCCCCChh-hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc-ccccCC
Q 048351 638 EYKNTLGLVKSVDLSSNKLGGEVPE-EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP-SSLSQV 715 (850)
Q Consensus 638 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l 715 (850)
+..++.|++|||+.|.+. .+|. ....+. |+.|+|++|.++.. ..+.+|.+|+.||+|+|-|.+--. .-+..|
T Consensus 205 --Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 205 --LRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred --HHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence 123344577888888887 3443 223333 78888888888754 567788888888888887774321 123445
Q ss_pred CCCCEEEcCCCcCccc
Q 048351 716 NRLSVMDLSHNNLSGK 731 (850)
Q Consensus 716 ~~L~~L~ls~N~l~g~ 731 (850)
.+|+.|+|.+|++.+.
T Consensus 279 s~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 279 SSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHHHHhhcCCccccC
Confidence 6777888888887643
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7.9e-09 Score=101.91 Aligned_cols=184 Identities=23% Similarity=0.228 Sum_probs=94.8
Q ss_pred CCEEeCCCCCCCCC-CCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCC-CCCCcchhhhhcCCCCCcE
Q 048351 150 LEYLDLFAASFSGP-IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCN-LSKSTDWLQEVDKIPSLKT 227 (850)
Q Consensus 150 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~ 227 (850)
|++||||+..++-. +-.-+..|.+|+.|.+.++++ .......+++-.+|+.||++.+. ++.. ..---+.+++.|.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHhh
Confidence 55555555444311 112234455555555555543 22222234455555555555543 2221 11223456677777
Q ss_pred EEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCc-CCcccchhh
Q 048351 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE-LDGEIPKFF 306 (850)
Q Consensus 228 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l 306 (850)
|+|++|.+....... ......++|+.|+|++.+-.-... . +..-...+++|.+|||++|. ++...-..|
T Consensus 265 LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~s-h------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKS-H------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhh-H------HHHHHHhCCceeeeccccccccCchHHHHH
Confidence 777777665443211 112222677777777654110000 0 11113467888888888775 443344556
Q ss_pred hcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCC
Q 048351 307 QNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSA 361 (850)
Q Consensus 307 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n 361 (850)
..++.|++|.++.+. +++|..++ .+...+.|.+||+.++
T Consensus 335 ~kf~~L~~lSlsRCY--~i~p~~~~--------------~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCY--DIIPETLL--------------ELNSKPSLVYLDVFGC 373 (419)
T ss_pred Hhcchheeeehhhhc--CCChHHee--------------eeccCcceEEEEeccc
Confidence 788888888888875 33443321 2556677777776554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=2.5e-08 Score=87.23 Aligned_cols=85 Identities=27% Similarity=0.366 Sum_probs=41.7
Q ss_pred cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
+.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|..+..+.++..||..+|.+. .||..+---+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 45555555555 45555555555555555555555 33444444555555555555554 33333222222233344444
Q ss_pred cCcccCCC
Q 048351 727 NLSGKIPT 734 (850)
Q Consensus 727 ~l~g~iP~ 734 (850)
++.+..|.
T Consensus 157 pl~~~~~~ 164 (177)
T KOG4579|consen 157 PLGDETKK 164 (177)
T ss_pred cccccCcc
Confidence 55444443
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=5.7e-07 Score=107.24 Aligned_cols=129 Identities=28% Similarity=0.305 Sum_probs=81.1
Q ss_pred CCCcEEEccCCcCcCccccccccCCCCccEEEccCCC--CCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccE
Q 048351 423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL--LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLT 500 (850)
Q Consensus 423 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 500 (850)
...+...+-+|.+....... .+++|++|-+..|. +....++.|..++.|++|||++|.=-+.+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~---~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS---ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCC---CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34445555555443322211 22467777777775 44344455667777777777777655677777777777777
Q ss_pred EeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCc
Q 048351 501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR 556 (850)
Q Consensus 501 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 556 (850)
|++++..+. .+|..+.++..|.+|++..+.-...+|.... .+++|++|.+..-.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~-~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILL-ELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhh-hcccccEEEeeccc
Confidence 777777777 6777777777777777777665544443333 47777777765543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.4e-07 Score=91.62 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCcEEEccCCCCCCCCCccccc-cCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccc-cCC
Q 048351 173 RLQYLSLGYNKLLRAGNLDWIS-QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSH-LNS 250 (850)
Q Consensus 173 ~L~~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~ 250 (850)
-++.|-+.++.+-..++...++ ..+.++.+||.+|.|+...++...+.++|.|++|+++.|.+...+. .+ ...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-----cCcccc
Confidence 3444555555443444444343 4677888899999888876666677788888888888888776553 11 122
Q ss_pred CCcccEEEccCCCC
Q 048351 251 SPSLETLGLSYNNL 264 (850)
Q Consensus 251 ~~~L~~L~Ls~N~l 264 (850)
.+|++|-|.+..+
T Consensus 121 -~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 121 -KNLRVLVLNGTGL 133 (418)
T ss_pred -cceEEEEEcCCCC
Confidence 4555555555443
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.1e-07 Score=83.36 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=78.8
Q ss_pred ccEEEcCCCCCCCCChhhhhc-cccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcC
Q 048351 646 VKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLS 724 (850)
Q Consensus 646 L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 724 (850)
|+.++|++|.+. ..|..|.. .+.++.|||++|.++ .+|..++.++.|+.|+++.|.+. ..|..+..|.+|.+||.-
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 478999999998 45555554 568999999999999 57888999999999999999999 677888889999999999
Q ss_pred CCcCcccCCCCCcCCCcCccccCCC
Q 048351 725 HNNLSGKIPTGTQLQSFNASVYDGN 749 (850)
Q Consensus 725 ~N~l~g~iP~~~~~~~~~~~~~~gN 749 (850)
+|.+- +||......+..+..-.||
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcC
Confidence 99876 7776533333333332344
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=3.9e-07 Score=89.05 Aligned_cols=199 Identities=21% Similarity=0.127 Sum_probs=106.8
Q ss_pred ccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCCC----CC-------cccCCCCCCcEEEccCCCC
Q 048351 119 LLKLHYLRHLDLSFNNFSGS---QIPMFIGSLSKLEYLDLFAASFSGP----IP-------PLLGNLSRLQYLSLGYNKL 184 (850)
Q Consensus 119 l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~Ls~N~l 184 (850)
+.-+..++.+|||+|.|... .+...+.+-.+|+..+++.- ++|. +| .++-.|++|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44578889999999988642 12334566778888888764 2332 33 3456788888888888876
Q ss_pred CCCCCc---cccccCCCccEEeCCCCCCCCCcc--hh---------hhhcCCCCCcEEEccCCCCCCCCCccccccccCC
Q 048351 185 LRAGNL---DWISQLFSLRYLDLSSCNLSKSTD--WL---------QEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNS 250 (850)
Q Consensus 185 ~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~--~~---------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 250 (850)
-...+. +.+++-+.|.+|.|++|.+..+.. +- ....+-|.|++.....|++...........+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 332222 246677778888888887654311 11 1122345666666666665543332111111111
Q ss_pred CCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCccc----chhhhcCCCCcEEEccCCcccc
Q 048351 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEI----PKFFQNMFKLEGLSLRGNSLEG 324 (850)
Q Consensus 251 ~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~ 324 (850)
..|+++.+..|.|.-.....+. -..+..+.+|+.|||.+|.++-.- ...+...+.|+.|.+.+|-++.
T Consensus 185 -~~lk~vki~qNgIrpegv~~L~-----~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 185 -ENLKEVKIQQNGIRPEGVTMLA-----FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred -cCceeEEeeecCcCcchhHHHH-----HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 3566666666655422111100 001234556666666666655321 2223344455666666665543
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.9e-07 Score=90.27 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=35.7
Q ss_pred CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCC
Q 048351 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGN 320 (850)
Q Consensus 252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 320 (850)
+.|++|||++..|+..--. ..+..+.+|+.|.|.++++...+...+..-.+|+.|+|+.+
T Consensus 185 sRlq~lDLS~s~it~stl~---------~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH---------GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHH---------HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4577777776666532111 11345566666666666666666666666666666666654
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=1.1e-05 Score=79.24 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred cCCCCCCCEEeCCCCCCCCC----CCcccCCCCCCcEEEccCCCCCCCC---------CccccccCCCccEEeCCCCCCC
Q 048351 144 IGSLSKLEYLDLFAASFSGP----IPPLLGNLSRLQYLSLGYNKLLRAG---------NLDWISQLFSLRYLDLSSCNLS 210 (850)
Q Consensus 144 ~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~---------~~~~l~~l~~L~~L~Ls~n~l~ 210 (850)
+..+..++.+|||+|.|... +...+++-.+|+..+++.-..-... ..+++.+|++|+..+||.|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34477888899999988644 2334566677888777653211100 0133566777888888887765
Q ss_pred CC--cchhhhhcCCCCCcEEEccCCCCC
Q 048351 211 KS--TDWLQEVDKIPSLKTLYLEQCDLQ 236 (850)
Q Consensus 211 ~~--~~~~~~l~~l~~L~~L~L~~n~l~ 236 (850)
.. +.+-+.+++-+.|++|.|++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 43 223344566677777777777654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=1.8e-05 Score=56.41 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=6.5
Q ss_pred ccccCCCCeeeCCCCcC
Q 048351 688 IGQLQSLDFLDLSRNQF 704 (850)
Q Consensus 688 l~~l~~L~~L~Ls~N~l 704 (850)
++++++|+.|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=4.4e-06 Score=82.97 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=116.8
Q ss_pred CCCCCCEEeCCCCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351 121 KLHYLRHLDLSFNNFSGS-QIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL 199 (850)
Q Consensus 121 ~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 199 (850)
..++++.|||.+|.|+.- ++..-+.++++|++|+|+.|.++..|-..=..+.+|++|-|.+..+.-......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 467889999999988742 2344567899999999999988754432214667888888888776444444557778888
Q ss_pred cEEeCCCCCCCCCc-------ch---hhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccc
Q 048351 200 RYLDLSSCNLSKST-------DW---LQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY 269 (850)
Q Consensus 200 ~~L~Ls~n~l~~~~-------~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 269 (850)
+.|.+|.|++...- ++ ...+...+.+..++++-|++. +..+++..+.+..|.+...-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------------r~Fpnv~sv~v~e~PlK~~s- 215 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------------RIFPNVNSVFVCEGPLKTES- 215 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH------------hhcccchheeeecCcccchh-
Confidence 88888888543320 01 111222233333333333332 22266777777766554321
Q ss_pred hhhhcCCCCCCCCCCCCCCcEEEccCCcCCcc-cchhhhcCCCCcEEEccCCccccc
Q 048351 270 PWLFNVSSIPDAPGPMISLRTLTLSDNELDGE-IPKFFQNMFKLEGLSLRGNSLEGV 325 (850)
Q Consensus 270 ~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ 325 (850)
--+.+..++.+-.|+|+.|+|..- --+.+..+++|..|.+++|.+...
T Consensus 216 --------~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 216 --------SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred --------hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 112345567777899999988642 225678899999999999987643
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=8.5e-05 Score=79.66 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=49.2
Q ss_pred cccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCC-ccccccCcCcCCCCC
Q 048351 492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN-RFYGKIPFQLCHLAD 570 (850)
Q Consensus 492 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~ 570 (850)
+..+.+++.|++++|.++ .+|. -..+|+.|.++++.--..+|..+ .++|++|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 344678888999988877 4562 23468888888744333677544 357888888888 443 4443 4
Q ss_pred cceeecccccC
Q 048351 571 IQILDLSLNNI 581 (850)
Q Consensus 571 L~~L~Ls~N~l 581 (850)
|+.|+++.|..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 66677766554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=6.6e-05 Score=70.88 Aligned_cols=107 Identities=26% Similarity=0.324 Sum_probs=74.0
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL 202 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 202 (850)
.+...+||++|.+.. + ..+..++.|.+|.|++|.|+.+-|.--.-+++|..|.|.+|.+...++..-+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456778888888863 2 3456788888899999888877676556677888888888888777777777777888888
Q ss_pred eCCCCCCCCCcch-hhhhcCCCCCcEEEccC
Q 048351 203 DLSSCNLSKSTDW-LQEVDKIPSLKTLYLEQ 232 (850)
Q Consensus 203 ~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~ 232 (850)
.+-+|.++.-... .-.+..+|+|++||...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8777776653211 11234455555555543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.0002 Score=76.86 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=88.0
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF 197 (850)
Q Consensus 118 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 197 (850)
.+..+.++++|++++|.++ .+|. + -.+|++|+++++.--..+|..+ .++|++|++++|..... -..
T Consensus 47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPE 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------ccc
Confidence 3555688999999999888 4673 2 3479999999865444667655 36899999998842211 124
Q ss_pred CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS 277 (850)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ 277 (850)
+|+.|+++.+....+..+|. +|+.|.+.+++...... .. ..+.++|++|++++|....
T Consensus 113 sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~----lp-~~LPsSLk~L~Is~c~~i~----------- 170 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQAR----ID-NLISPSLKTLSLTGCSNII----------- 170 (426)
T ss_pred ccceEEeCCCCCcccccCcc------hHhheeccccccccccc----cc-cccCCcccEEEecCCCccc-----------
Confidence 68888888776655433343 46677764432111000 00 1123689999998877542
Q ss_pred CCCCCCCCCCCcEEEccCCc
Q 048351 278 IPDAPGPMISLRTLTLSDNE 297 (850)
Q Consensus 278 ip~~l~~l~~L~~L~Ls~N~ 297 (850)
+|..+. .+|++|+++.+.
T Consensus 171 LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 171 LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred Cccccc--ccCcEEEecccc
Confidence 222221 478888887763
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=8e-05 Score=53.11 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=27.8
Q ss_pred CCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccc
Q 048351 286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV 325 (850)
Q Consensus 286 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 325 (850)
++|++|++++|+|+ .+|..++++++|++|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 36778888888887 4666678888888888888887643
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2.7e-05 Score=90.80 Aligned_cols=155 Identities=18% Similarity=0.250 Sum_probs=93.3
Q ss_pred CCCCEEeCCCCCCC-CCCCcccC-CCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCC
Q 048351 148 SKLEYLDLFAASFS-GPIPPLLG-NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL 225 (850)
Q Consensus 148 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 225 (850)
.+|++||+++.... ..-|..++ .||.|++|.+++-.+....-.....++++|+.||+|+.+++.. .+++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 46777777765432 22233333 4677888877765542222123356788888888888888774 667888888
Q ss_pred cEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCcc--chhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccc
Q 048351 226 KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI--YPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP 303 (850)
Q Consensus 226 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 303 (850)
++|.+.+=.+...... ..++++ ++|+.||+|..+....- ..-.- +.-..+++|+.||.|++.+.+.+-
T Consensus 198 q~L~mrnLe~e~~~~l---~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYl------ec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDL---IDLFNL-KKLRVLDISRDKNNDDTKIIEQYL------ECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHHhccCCCCCchhhH---HHHhcc-cCCCeeeccccccccchHHHHHHH------HhcccCccccEEecCCcchhHHHH
Confidence 8888887666543221 356666 88888888876654321 11110 112346788888888887776544
Q ss_pred hhhh-cCCCCcEEE
Q 048351 304 KFFQ-NMFKLEGLS 316 (850)
Q Consensus 304 ~~l~-~l~~L~~L~ 316 (850)
+.+. .-++|+.+.
T Consensus 268 e~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 268 EELLNSHPNLQQIA 281 (699)
T ss_pred HHHHHhCccHhhhh
Confidence 4332 334444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00013 Score=69.02 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=62.4
Q ss_pred CCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccce--eecchhHHhcCCCCCEE
Q 048351 473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS--GNIPAWIGESLLNLVVL 550 (850)
Q Consensus 473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L 550 (850)
+...+||++|.+... +.|..++.|.+|.+++|+|+.+-|..-.-+++|..|.|.+|.|. |.+..- . .++.|++|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a-~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-A-SCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-c-cCCcccee
Confidence 455666666666421 34556666677777777776655555555566777777777665 122221 1 46777777
Q ss_pred EccCCcccccc---CcCcCCCCCcceeecccc
Q 048351 551 DLRSNRFYGKI---PFQLCHLADIQILDLSLN 579 (850)
Q Consensus 551 ~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N 579 (850)
.+-+|.++..- -..++.+++|++||.+.=
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777765322 124667888888887653
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=6.7e-05 Score=74.06 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=64.5
Q ss_pred ccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCC--CCCCCCCcccCCCCCCcEEEccCCCCCCCCCc
Q 048351 113 GTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAA--SFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL 190 (850)
Q Consensus 113 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 190 (850)
|.+..-.-.+..|+.|++.+..++.. ..+-.|++|++|.+|.| .+++.++.....+++|++|+++.|++......
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 33444445556666666666666532 23445788889999988 66666666666778888888888887544444
Q ss_pred cccccCCCccEEeCCCCCCCCC
Q 048351 191 DWISQLFSLRYLDLSSCNLSKS 212 (850)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~ 212 (850)
..+..+.+|..||+.+|..+..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred chhhhhcchhhhhcccCCcccc
Confidence 5566677777777777765553
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00014 Score=84.91 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=91.0
Q ss_pred CCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCC-CCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351 122 LHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGP-IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL 199 (850)
Q Consensus 122 l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 199 (850)
-.+|++||+++...-...-|..+| .||+|++|.+++-.+... .-....++++|..||+|+..+. ....++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---nl~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---NLSGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---CcHHHhccccH
Confidence 356788888776543222333343 478888888877666432 2334567788888888877642 33457777888
Q ss_pred cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCc-cccccccCCCCcccEEEccCCCCCCccchh
Q 048351 200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTI-HRSFSHLNSSPSLETLGLSYNNLTASIYPW 271 (850)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 271 (850)
++|.+.+=.+.... ....+.++++|+.||+|.......... ..-.+....+|+|+.||.|++.+...+-..
T Consensus 198 q~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 88877776666543 234566788888888887655433310 000122233489999999998888765443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.04 E-value=0.0013 Score=60.06 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=41.0
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
+++|+.+.+.. .+......+|.++++|+.+++.++ +.......|.++++++.+.+.+ .+.......|..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 34566666553 344344445555656666666553 4433334455555566666544 33223334455555555555
Q ss_pred cccccceeecchhHHhcCCCCCEEEccC
Q 048351 527 LEENSISGNIPAWIGESLLNLVVLDLRS 554 (850)
Q Consensus 527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~ 554 (850)
+..+ +. .++...+.+. +|+.+.+..
T Consensus 88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 5443 33 4444444333 555555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0021 Score=58.76 Aligned_cols=124 Identities=14% Similarity=0.186 Sum_probs=73.6
Q ss_pred CcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcC
Q 048351 465 PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544 (850)
Q Consensus 465 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l 544 (850)
..+|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+. .++...+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 35688888999999985 566566678899989999999886 6655667788998999999976 554 6777777678
Q ss_pred CCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccC
Q 048351 545 LNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595 (850)
Q Consensus 545 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 595 (850)
++|+.+++..+ +.......|.+. .|+.+.+.. .+......+|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999999776 655566678887 899998876 4444555667666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=5.4e-05 Score=74.71 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=65.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCcc
Q 048351 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLR 200 (850)
Q Consensus 121 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 200 (850)
.+.+.+.|++.++.+++++ -...++.|++|.||-|.|+..- .+..|++|+.|+|..|.+........+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 4667788999999998653 3457899999999999998543 3788899999999988876555556677777777
Q ss_pred EEeCCCCCCCC
Q 048351 201 YLDLSSCNLSK 211 (850)
Q Consensus 201 ~L~Ls~n~l~~ 211 (850)
.|.|..|.-.+
T Consensus 92 ~LWL~ENPCc~ 102 (388)
T KOG2123|consen 92 TLWLDENPCCG 102 (388)
T ss_pred hHhhccCCccc
Confidence 77777775443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0014 Score=65.01 Aligned_cols=63 Identities=29% Similarity=0.374 Sum_probs=30.9
Q ss_pred ccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC--ccccCCchhhcCCCCcCeeccccccce
Q 048351 469 LQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN--NFSGELPSLLKNFTHLRVVALEENSIS 533 (850)
Q Consensus 469 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~ 533 (850)
..+..|+.|.+.+..++.. ..+-.+++|+.|.++.| ++.+.++.....+++|+++++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3344445555554444421 22334555556666655 444444444444555555555555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.00043 Score=68.57 Aligned_cols=86 Identities=23% Similarity=0.228 Sum_probs=50.6
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC-chhhcCCCCcCeec
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL-PSLLKNFTHLRVVA 526 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 526 (850)
.+.+.|+.-+|.++++. ....++.|++|.|+-|+|+..- .+..|++|++|+|..|.|...- -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45666777777766321 2345667777777777776442 3566677777777777665211 12345666666666
Q ss_pred cccccceeecc
Q 048351 527 LEENSISGNIP 537 (850)
Q Consensus 527 L~~N~l~~~ip 537 (850)
|..|.-.|.-+
T Consensus 95 L~ENPCc~~ag 105 (388)
T KOG2123|consen 95 LDENPCCGEAG 105 (388)
T ss_pred hccCCcccccc
Confidence 66665554433
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.63 E-value=0.00059 Score=71.56 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=15.8
Q ss_pred CCcEEEccCCCCCCCCCcc-ccccCCCccEEeCCCCC
Q 048351 173 RLQYLSLGYNKLLRAGNLD-WISQLFSLRYLDLSSCN 208 (850)
Q Consensus 173 ~L~~L~Ls~N~l~~~~~~~-~l~~l~~L~~L~Ls~n~ 208 (850)
.|+.|.+.+++-....... +..+++++++|++.++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 4555666655422222111 22344555555555543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.0079 Score=35.58 Aligned_cols=11 Identities=45% Similarity=0.899 Sum_probs=4.5
Q ss_pred CeeeCCCCcCc
Q 048351 695 DFLDLSRNQFS 705 (850)
Q Consensus 695 ~~L~Ls~N~l~ 705 (850)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.72 E-value=0.01 Score=35.07 Aligned_cols=19 Identities=47% Similarity=0.473 Sum_probs=9.7
Q ss_pred CCeEecCCCcCccCCCcccc
Q 048351 670 LIGLNLSRNNLTGYITPKIG 689 (850)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~l~ 689 (850)
|++|||++|+++ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444444
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.92 E-value=0.0038 Score=65.71 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=51.4
Q ss_pred cCCCCCCEEeCCCCC-CCCCCCCcccCCCCCCCEEeCCCC-CCCCCCCc-ccCCCCCCcEEEccCCCCCCCCCcc-cccc
Q 048351 120 LKLHYLRHLDLSFNN-FSGSQIPMFIGSLSKLEYLDLFAA-SFSGPIPP-LLGNLSRLQYLSLGYNKLLRAGNLD-WISQ 195 (850)
Q Consensus 120 ~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~ 195 (850)
.+.+++++|++.++. ++....-..-..+++|++|+|..+ .++...-. -...+++|++|+++.+.-+...... ...+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 467788888888775 222211222345788888888773 34433222 2246888888888887643332222 3455
Q ss_pred CCCccEEeCCCC
Q 048351 196 LFSLRYLDLSSC 207 (850)
Q Consensus 196 l~~L~~L~Ls~n 207 (850)
+..++.+.+.+|
T Consensus 241 ~~~l~~~~~kGC 252 (483)
T KOG4341|consen 241 CKELEKLSLKGC 252 (483)
T ss_pred chhhhhhhhccc
Confidence 666666655554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.80 E-value=0.00089 Score=74.87 Aligned_cols=92 Identities=29% Similarity=0.253 Sum_probs=46.9
Q ss_pred CCCcEEEccCCCCCCCCCc---cccccCCCccEEeCCCCCCCCC--cchhhhhcCC-CCCcEEEccCCCCCCCCCccccc
Q 048351 172 SRLQYLSLGYNKLLRAGNL---DWISQLFSLRYLDLSSCNLSKS--TDWLQEVDKI-PSLKTLYLEQCDLQLQPTIHRSF 245 (850)
Q Consensus 172 ~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~ 245 (850)
..+..|.|.+|.+...+.. ..+.....|+.|++++|.+... ..+...+... ..|++|++..|.++.........
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477888888876333221 1355666777777777777642 1111222222 34555555555555444322223
Q ss_pred cccCCCCcccEEEccCCCC
Q 048351 246 SHLNSSPSLETLGLSYNNL 264 (850)
Q Consensus 246 ~~~~~~~~L~~L~Ls~N~l 264 (850)
.+... ..++.+|++.|.+
T Consensus 167 ~L~~~-~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKN-EHLTELDLSLNGL 184 (478)
T ss_pred HHhcc-cchhHHHHHhccc
Confidence 33332 5555555555554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.44 E-value=0.00063 Score=76.07 Aligned_cols=98 Identities=26% Similarity=0.280 Sum_probs=58.8
Q ss_pred CCCCCcEEEccCCCCCCCCCccccccccCCCCc-ccEEEccCCCCCCccchhhhcCCCCCCCCCCC-CCCcEEEccCCcC
Q 048351 221 KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS-LETLGLSYNNLTASIYPWLFNVSSIPDAPGPM-ISLRTLTLSDNEL 298 (850)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l-~~L~~L~Ls~N~l 298 (850)
...++++|++.+|.++...-......+... +. +..+++..|++.+..... +...+..+ ..++.++++.|.|
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~-~~~~~el~l~~n~l~d~g~~~------L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASG-ESLLRELDLASNKLGDVGVEK------LLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhcc-chhhHHHHHHhcCcchHHHHH------HHHHhcccchhhhhhhhhcCCc
Confidence 355677777777766532221111222222 33 666888888877542222 12223334 6788899999988
Q ss_pred Ccc----cchhhhcCCCCcEEEccCCccccc
Q 048351 299 DGE----IPKFFQNMFKLEGLSLRGNSLEGV 325 (850)
Q Consensus 299 ~~~----~p~~l~~l~~L~~L~L~~N~l~~~ 325 (850)
+.. +...+..++.++++.++.|.+...
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 764 334556777899999999987754
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.75 E-value=0.0067 Score=58.75 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=73.2
Q ss_pred ccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEc
Q 048351 644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDL 723 (850)
Q Consensus 644 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 723 (850)
...+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..+++...+..+++..|.++ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34478999999987 45567888899999999999998 68899999999999999999998 78899999999999999
Q ss_pred CCCcCc
Q 048351 724 SHNNLS 729 (850)
Q Consensus 724 s~N~l~ 729 (850)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999875
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.67 E-value=0.041 Score=62.99 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=19.2
Q ss_pred CCCCCCEEEccCCc-CCCCCchhHhhcCcCCCEEecccCc
Q 048351 349 TQKHFSVLDISSAG-ISDSIPDWFSDTSHKLADLNFSHNQ 387 (850)
Q Consensus 349 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~N~ 387 (850)
.+++|+.|+++.+. +++..-..+...+++|+.|.+.++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34555555555555 4444334444444455555544443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.86 E-value=0.21 Score=27.32 Aligned_cols=13 Identities=54% Similarity=0.677 Sum_probs=5.6
Q ss_pred CCCEEeCCCCCCC
Q 048351 124 YLRHLDLSFNNFS 136 (850)
Q Consensus 124 ~L~~L~Ls~n~l~ 136 (850)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.98 E-value=0.37 Score=29.70 Aligned_cols=14 Identities=57% Similarity=0.629 Sum_probs=6.7
Q ss_pred CCCCeeeCCCCcCc
Q 048351 692 QSLDFLDLSRNQFS 705 (850)
Q Consensus 692 ~~L~~L~Ls~N~l~ 705 (850)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444455555444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.98 E-value=0.37 Score=29.70 Aligned_cols=14 Identities=57% Similarity=0.629 Sum_probs=6.7
Q ss_pred CCCCeeeCCCCcCc
Q 048351 692 QSLDFLDLSRNQFS 705 (850)
Q Consensus 692 ~~L~~L~Ls~N~l~ 705 (850)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444455555444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.38 E-value=0.025 Score=54.98 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=43.2
Q ss_pred cccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCC
Q 048351 468 WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNL 547 (850)
Q Consensus 468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L 547 (850)
+......+.||++.|++. ..-..|..++.+.+|+++.|.+. ..|..+.....+..+++.+|..+ ..|.+.. ..+.+
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCCc
Confidence 344455566666666554 22334445555555555555554 45555555555555555555554 4444433 24444
Q ss_pred CEEEccCCcc
Q 048351 548 VVLDLRSNRF 557 (850)
Q Consensus 548 ~~L~L~~N~l 557 (850)
+++++.+|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 4444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.53 E-value=0.45 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=10.8
Q ss_pred CCcCeeccccccceeecchhHH
Q 048351 520 THLRVVALEENSISGNIPAWIG 541 (850)
Q Consensus 520 ~~L~~L~L~~N~l~~~ip~~~~ 541 (850)
++|+.|+|++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 5554443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.53 E-value=0.45 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=10.8
Q ss_pred CCcCeeccccccceeecchhHH
Q 048351 520 THLRVVALEENSISGNIPAWIG 541 (850)
Q Consensus 520 ~~L~~L~L~~N~l~~~ip~~~~ 541 (850)
++|+.|+|++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 5554443
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.76 E-value=0.25 Score=56.48 Aligned_cols=138 Identities=25% Similarity=0.289 Sum_probs=85.3
Q ss_pred cCCCCCCEEeCCCCC-CCCCCCCcccCCCCCCCEEeCCCC-CCCCCCC----cccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351 120 LKLHYLRHLDLSFNN-FSGSQIPMFIGSLSKLEYLDLFAA-SFSGPIP----PLLGNLSRLQYLSLGYNKLLRAGNLDWI 193 (850)
Q Consensus 120 ~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 193 (850)
...+.|+.|.+..+. +....+-.....+++|+.|+++++ ......+ .....+++|+.|+++++..........+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888773 332112344567899999999873 2221222 2345678999999998874333334444
Q ss_pred c-cCCCccEEeCCCCC-CCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccC
Q 048351 194 S-QLFSLRYLDLSSCN-LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSY 261 (850)
Q Consensus 194 ~-~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~ 261 (850)
+ .+++|++|.+.++. ++.. .+......+++|++|++++|........ ......+++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l---~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGL---EALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHH---HHHHHhCcchhhhhhhh
Confidence 4 37899999988777 5543 3445556788899999998876422111 11122236666665443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.16 E-value=0.2 Score=48.00 Aligned_cols=82 Identities=28% Similarity=0.267 Sum_probs=43.9
Q ss_pred CCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccc-cCCCccEEeCCCCC-CCCCcchhhhhcCCCCCc
Q 048351 149 KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS-QLFSLRYLDLSSCN-LSKSTDWLQEVDKIPSLK 226 (850)
Q Consensus 149 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~ 226 (850)
.++.+|-++..|..+--+.+.+++.++.|.+.++.-...-..+.++ -.++|+.|++++|. |+.. -...+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHHhhhhH
Confidence 4556666666665544455666666666666666532222222222 23566666666653 4442 334555566666
Q ss_pred EEEccC
Q 048351 227 TLYLEQ 232 (850)
Q Consensus 227 ~L~L~~ 232 (850)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 665543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.12 E-value=0.59 Score=28.13 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=7.5
Q ss_pred CCCcEEEccCCcCCccc
Q 048351 286 ISLRTLTLSDNELDGEI 302 (850)
Q Consensus 286 ~~L~~L~Ls~N~l~~~~ 302 (850)
++|++|+|++|+|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 34555555555554433
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.58 E-value=18 Score=39.72 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=32.8
Q ss_pred CccEEEccCCCCCCCCCc---ccccCCCCCEEEcCCCcccc----cCCCccccccCccEEeccCCccc
Q 048351 449 NLVYLDLSSNLLSGKLPD---CWLQFNMLRILNLANNNFSG----KIPNSCGYLQKMLTLSLHHNNFS 509 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~ 509 (850)
-++.+.++.|.+....-. ....-+.+..|++++|.... .+|.....-..+.....+.|..+
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 356677777766532222 22334567788888876542 23444444445555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.76 E-value=0.97 Score=43.53 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=17.2
Q ss_pred CCCCCEEEccCC-ccccccCcCcCCCCCcceeecc
Q 048351 544 LLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLS 577 (850)
Q Consensus 544 l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls 577 (850)
.++|+.|++++| +|+..--..+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 355666666655 3333323334455555555554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.38 E-value=3.3 Score=25.50 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=12.7
Q ss_pred CCCCEEEcCCCcCcccCCC
Q 048351 716 NRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 716 ~~L~~L~ls~N~l~g~iP~ 734 (850)
++|+.|++++|+|+ .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35778888888887 4554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.50 E-value=4 Score=25.24 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=8.4
Q ss_pred CCCCeeeCCCCcCc
Q 048351 692 QSLDFLDLSRNQFS 705 (850)
Q Consensus 692 ~~L~~L~Ls~N~l~ 705 (850)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.93 E-value=32 Score=37.85 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=14.1
Q ss_pred CCCCCEEEccCCcCCCCCchhH
Q 048351 350 QKHFSVLDISSAGISDSIPDWF 371 (850)
Q Consensus 350 l~~L~~L~Ls~n~l~~~~~~~~ 371 (850)
-+.++++|++.|.+.+..|..+
T Consensus 164 npr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred cchhhhhccCCCcccccCCccc
Confidence 3556677777777766655544
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.99 E-value=8.5 Score=24.16 Aligned_cols=14 Identities=50% Similarity=0.593 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCCCC
Q 048351 123 HYLRHLDLSFNNFS 136 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~ 136 (850)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 91
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.54 E-value=4.6 Score=36.90 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.5
Q ss_pred HHhhhcccc
Q 048351 823 YNFLTVTKD 831 (850)
Q Consensus 823 ~~~~~~~~~ 831 (850)
..|++.-..
T Consensus 80 tdfidSdGk 88 (154)
T PF04478_consen 80 TDFIDSDGK 88 (154)
T ss_pred CccccCCCc
Confidence 356664443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.97 E-value=9.9 Score=42.49 Aligned_cols=68 Identities=28% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc
Q 048351 222 IPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG 300 (850)
Q Consensus 222 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~ 300 (850)
.+.+..++|++|++...... .++....|+|+.|+|++|...-.-..+++.+ ....|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~---sslsq~apklk~L~LS~N~~~~~~~~el~K~--------k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDAL---SSLSQIAPKLKTLDLSHNHSKISSESELDKL--------KGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchhhchhhh---hHHHHhcchhheeecccchhhhcchhhhhhh--------cCCCHHHeeecCCcccc
Confidence 44455555555555433221 1222222667777777762111111111111 12346777777777754
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.78 E-value=18 Score=48.63 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=17.1
Q ss_pred ecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351 674 NLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705 (850)
Q Consensus 674 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 705 (850)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35555555444445555555555555555544
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.73 E-value=42 Score=22.83 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=8.4
Q ss_pred ehhhHHHHHHHHHHHHHH
Q 048351 792 GFFVTLILGFIVGFWGVC 809 (850)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~ 809 (850)
++++++++|+++.++.++
T Consensus 7 aIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMF 24 (38)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344555555554433333
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.42 E-value=30 Score=38.93 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=24.1
Q ss_pred CCCCCCEEEccCCcCCCCCc-hhHhhcCcCCCEEecccC
Q 048351 349 TQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHN 386 (850)
Q Consensus 349 ~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~Ls~N 386 (850)
+.+.+..+.|++|++..... ..+....|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45666777788887764322 334455567777777777
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.10 E-value=34 Score=30.46 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 048351 793 FFVTLILGFIVGFWGVCGT 811 (850)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~ 811 (850)
.++++++|+++|+++++++
T Consensus 65 ~i~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILL 83 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHH
Confidence 3455555555555444433
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=28.36 E-value=25 Score=34.19 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=14.4
Q ss_pred eeehhhHHHHHHHHHHHHHHHhhhcC
Q 048351 790 TLGFFVTLILGFIVGFWGVCGTLLLN 815 (850)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (850)
+..+++++++|++.++++++++.++|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 34556666666665555555554443
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.49 E-value=26 Score=21.36 Aligned_cols=9 Identities=33% Similarity=0.220 Sum_probs=3.4
Q ss_pred CcEEEccCC
Q 048351 174 LQYLSLGYN 182 (850)
Q Consensus 174 L~~L~Ls~N 182 (850)
|++|+++++
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.58 E-value=49 Score=44.86 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.0
Q ss_pred EcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351 650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG 682 (850)
Q Consensus 650 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 682 (850)
||++|+|+...+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888899999999999999998864
Done!