Query 048351
Match_columns 850
No_of_seqs 875 out of 5378
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-87 4.1E-92 810.7 49.3 693 32-765 6-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.6E-65 2.6E-69 612.0 39.1 569 109-731 110-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-57 5.4E-62 543.5 49.1 575 123-757 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-56 4.5E-61 535.5 47.4 568 109-734 35-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-55 4E-60 537.5 40.4 571 128-770 9-597 (844)
6 3t6q_A CD180 antigen; protein- 100.0 2.4E-53 8.1E-58 500.5 43.0 523 114-733 26-564 (606)
7 4eco_A Uncharacterized protein 100.0 3.3E-55 1.1E-59 515.9 23.2 517 34-730 26-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-53 9.2E-58 500.1 39.5 518 114-734 25-563 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-52 7.1E-57 492.5 39.5 509 109-709 42-562 (606)
10 3t6q_A CD180 antigen; protein- 100.0 6.2E-52 2.1E-56 488.4 39.9 511 109-709 43-564 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-51 4.1E-56 502.2 38.1 534 70-709 14-564 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 1.2E-51 4.2E-56 492.5 30.6 504 32-731 263-842 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 2.1E-48 7.3E-53 455.0 36.9 500 123-738 28-540 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-48 1.1E-52 451.3 33.9 486 114-735 19-516 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 6.2E-47 2.1E-51 442.6 32.6 498 93-710 28-536 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4E-46 1.4E-50 433.5 31.1 487 125-756 7-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-45 1.1E-49 433.9 39.1 551 123-770 52-616 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-46 8.3E-51 432.1 20.3 204 447-733 275-485 (520)
19 4eco_A Uncharacterized protein 100.0 1.7E-46 5.9E-51 441.7 18.0 461 123-754 81-602 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-44 3.8E-49 418.3 27.7 455 109-709 10-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-43 5.2E-48 419.5 38.1 527 129-757 37-585 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 9.8E-44 3.4E-48 424.4 27.2 475 197-753 323-841 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-42 3.7E-47 405.0 24.0 460 125-734 33-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-41 5.3E-46 395.2 27.8 458 109-709 41-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 9.4E-42 3.2E-46 383.8 20.0 408 117-734 5-416 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 3.3E-39 1.1E-43 366.1 31.9 394 200-738 13-417 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 1.7E-38 5.9E-43 360.1 28.8 379 148-586 30-412 (455)
28 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-39 5.7E-44 348.1 15.1 293 34-387 2-302 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 6E-38 2E-42 352.8 24.6 382 109-591 21-420 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-36 9.2E-41 339.6 28.4 367 111-591 30-396 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-36 2E-40 336.8 28.6 360 140-735 34-393 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 9.3E-36 3.2E-40 339.6 24.0 347 255-756 14-360 (477)
33 1o6v_A Internalin A; bacterial 100.0 2.6E-34 8.9E-39 326.2 34.7 106 120-237 43-148 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 5E-36 1.7E-40 321.0 17.8 259 448-761 50-312 (313)
35 1o6v_A Internalin A; bacterial 100.0 5.9E-34 2E-38 323.2 33.0 216 446-731 175-390 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 3.3E-33 1.1E-37 318.6 26.7 323 354-756 14-337 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 5.2E-33 1.8E-37 308.1 26.6 312 120-584 42-354 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 6.5E-33 2.2E-37 307.3 26.2 335 285-756 44-378 (390)
39 3oja_B Anopheles plasmodium-re 100.0 5.7E-33 2E-37 324.8 26.2 335 285-756 50-384 (597)
40 3oja_B Anopheles plasmodium-re 100.0 3.2E-32 1.1E-36 318.5 27.8 312 121-584 49-360 (597)
41 4fmz_A Internalin; leucine ric 100.0 1E-30 3.5E-35 284.9 30.2 79 647-729 268-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 1.6E-30 5.3E-35 283.4 30.6 308 118-558 39-346 (347)
43 4fcg_A Uncharacterized protein 100.0 4.2E-32 1.4E-36 292.3 15.3 275 32-364 21-314 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-34 1.2E-38 325.2 -8.2 115 123-237 3-127 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 5.2E-33 1.8E-37 315.6 -0.4 364 252-730 3-412 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-29 5.1E-34 273.7 25.3 264 403-727 55-331 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 8.5E-29 2.9E-33 267.7 27.5 250 253-590 34-285 (332)
48 1xku_A Decorin; proteoglycan, 100.0 4.8E-29 1.6E-33 269.5 25.5 224 447-729 75-306 (330)
49 1xku_A Decorin; proteoglycan, 100.0 1.7E-28 5.9E-33 265.1 28.2 224 448-730 52-277 (330)
50 3ogk_B Coronatine-insensitive 100.0 2.2E-31 7.4E-36 312.4 -4.2 412 116-560 66-528 (592)
51 2z66_A Variable lymphocyte rec 100.0 3.2E-28 1.1E-32 260.1 20.2 233 448-733 28-265 (306)
52 4fcg_A Uncharacterized protein 100.0 2.4E-28 8.4E-33 262.9 18.4 226 448-729 81-314 (328)
53 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4E-33 269.1 13.8 276 406-734 35-319 (353)
54 2z66_A Variable lymphocyte rec 100.0 3.5E-28 1.2E-32 259.8 16.2 275 406-734 11-292 (306)
55 3zyi_A Leucine-rich repeat-con 100.0 2.7E-27 9.2E-32 267.3 24.1 231 448-732 75-306 (452)
56 2z80_A TOLL-like receptor 2, v 100.0 5.8E-28 2E-32 263.5 16.6 277 423-756 31-318 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 4.4E-27 1.5E-31 264.6 23.2 230 448-731 64-294 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 1E-27 3.6E-32 253.2 16.7 228 451-734 14-243 (285)
59 3zyj_A Leucine-rich repeat-con 99.9 6.1E-27 2.1E-31 263.4 23.2 252 449-757 44-297 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.4E-31 260.4 23.1 250 404-707 56-305 (452)
61 1ozn_A Reticulon 4 receptor; N 99.9 6.3E-27 2.2E-31 247.2 17.8 235 448-735 32-267 (285)
62 3ogk_B Coronatine-insensitive 99.9 2.5E-28 8.4E-33 286.4 4.1 238 447-731 269-528 (592)
63 1wwl_A Monocyte differentiatio 99.9 1.3E-27 4.6E-32 255.6 7.7 110 448-558 95-214 (312)
64 1wwl_A Monocyte differentiatio 99.9 3.1E-28 1.1E-32 260.6 1.8 224 450-730 65-310 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-25 1.5E-29 255.3 24.5 242 402-734 61-302 (622)
66 3oja_A Leucine-rich immune mol 99.9 1.7E-26 5.9E-31 262.1 11.0 220 448-733 34-255 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-24 5.3E-29 250.8 27.4 269 351-716 40-308 (622)
68 2z62_A TOLL-like receptor 4, v 99.9 7.8E-25 2.7E-29 230.0 21.0 228 452-735 11-243 (276)
69 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-26 1.3E-30 244.8 9.9 217 447-729 33-250 (317)
70 2p1m_B Transport inhibitor res 99.9 2.4E-28 8.2E-33 286.6 -9.4 418 118-582 61-519 (594)
71 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-26 1.8E-30 243.8 8.3 269 252-587 10-281 (317)
72 2o6q_A Variable lymphocyte rec 99.9 6.8E-24 2.3E-28 221.8 21.5 205 474-733 18-222 (270)
73 3oja_A Leucine-rich immune mol 99.9 4.4E-25 1.5E-29 250.5 12.0 221 470-755 32-253 (487)
74 2p1m_B Transport inhibitor res 99.9 2.4E-26 8.3E-31 269.6 -0.4 389 252-729 105-519 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.5E-28 220.6 19.5 226 475-756 10-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 2.4E-23 8.3E-28 219.5 20.6 205 468-731 6-210 (290)
77 2o6q_A Variable lymphocyte rec 99.9 6.8E-23 2.3E-27 214.2 21.6 205 449-708 17-221 (270)
78 3rfs_A Internalin B, repeat mo 99.9 5.4E-24 1.8E-28 222.8 12.4 222 449-735 20-241 (272)
79 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.1E-28 219.4 15.3 207 447-716 40-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 7.5E-23 2.6E-27 215.8 19.6 207 492-757 6-213 (290)
81 3goz_A Leucine-rich repeat-con 99.9 3.8E-24 1.3E-28 234.0 4.9 257 427-731 2-299 (362)
82 4glp_A Monocyte differentiatio 99.9 4.2E-23 1.5E-27 220.5 9.7 228 449-730 65-308 (310)
83 3m19_A Variable lymphocyte rec 99.9 3E-22 1E-26 206.8 15.3 211 498-764 16-232 (251)
84 2ca6_A RAN GTPase-activating p 99.9 5.2E-24 1.8E-28 235.2 2.1 236 447-733 31-320 (386)
85 2xwt_C Thyrotropin receptor; s 99.9 4.2E-22 1.5E-26 204.2 14.7 196 473-726 32-236 (239)
86 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4E-27 222.1 10.3 237 291-584 3-268 (362)
87 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 216.9 9.4 206 448-706 91-308 (310)
88 2ast_B S-phase kinase-associat 99.9 5.2E-23 1.8E-27 222.8 5.0 252 425-735 49-312 (336)
89 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.4E-26 207.8 15.9 193 470-730 39-231 (308)
90 1h6u_A Internalin H; cell adhe 99.9 2.1E-21 7.3E-26 206.8 16.2 193 447-707 40-232 (308)
91 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.5E-26 199.8 14.1 197 448-703 31-237 (239)
92 2ast_B S-phase kinase-associat 99.9 8.9E-23 3.1E-27 220.9 4.3 256 377-714 48-315 (336)
93 3m19_A Variable lymphocyte rec 99.9 7.6E-21 2.6E-25 196.3 17.9 180 449-707 15-194 (251)
94 2ca6_A RAN GTPase-activating p 99.8 2.2E-22 7.6E-27 222.2 5.0 138 520-709 159-320 (386)
95 4ay9_X Follicle-stimulating ho 99.8 2.3E-20 7.8E-25 202.8 15.9 223 448-727 30-257 (350)
96 2o6s_A Variable lymphocyte rec 99.8 9.2E-20 3.2E-24 182.4 15.6 63 647-716 127-189 (208)
97 3cvr_A Invasion plasmid antige 99.8 5.7E-20 2E-24 209.9 15.5 188 449-716 60-254 (571)
98 3cvr_A Invasion plasmid antige 99.8 6.4E-20 2.2E-24 209.5 15.8 182 473-734 60-248 (571)
99 2o6s_A Variable lymphocyte rec 99.8 6E-20 2E-24 183.8 13.7 81 647-734 103-183 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 3.5E-20 1.2E-24 186.8 10.7 157 523-734 14-171 (220)
101 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.9E-24 197.3 15.1 244 451-753 12-259 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 6.9E-19 2.4E-23 177.3 14.2 154 523-731 14-167 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.7E-23 174.0 14.2 157 499-709 14-170 (220)
104 3e6j_A Variable lymphocyte rec 99.8 2.8E-18 9.5E-23 174.1 15.0 156 522-733 21-176 (229)
105 2xot_A Amphoterin-induced prot 99.8 9.4E-19 3.2E-23 190.8 12.1 176 475-705 21-202 (361)
106 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.8E-23 183.2 12.5 120 452-582 28-147 (291)
107 1h6t_A Internalin B; cell adhe 99.8 3.3E-18 1.1E-22 180.3 15.0 190 473-730 25-214 (291)
108 1dce_A Protein (RAB geranylger 99.8 6.1E-20 2.1E-24 211.0 -0.4 189 470-733 347-550 (567)
109 1m9s_A Internalin B; cell inva 99.8 2E-18 6.8E-23 199.5 12.2 124 448-582 43-166 (605)
110 3e6j_A Variable lymphocyte rec 99.7 2.3E-17 7.8E-22 167.4 18.0 135 65-236 14-148 (229)
111 2v9t_B SLIT homolog 2 protein 99.7 9.9E-18 3.4E-22 168.8 14.2 152 500-706 15-166 (220)
112 2xot_A Amphoterin-induced prot 99.7 6.3E-18 2.1E-22 184.3 12.9 176 406-582 22-202 (361)
113 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.3E-22 192.1 16.4 147 422-582 42-188 (605)
114 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.5E-23 205.5 8.3 193 478-733 207-408 (727)
115 1w8a_A SLIT protein; signaling 99.7 4.7E-18 1.6E-22 167.3 9.7 155 548-756 11-166 (192)
116 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.5E-22 163.4 12.3 154 517-730 41-195 (197)
117 1xeu_A Internalin C; cellular 99.7 9.8E-18 3.3E-22 173.8 9.4 171 494-731 17-187 (263)
118 4ezg_A Putative uncharacterize 99.7 3.4E-17 1.1E-21 162.1 12.4 155 493-706 41-195 (197)
119 1dce_A Protein (RAB geranylger 99.7 5.9E-19 2E-23 202.8 -0.4 197 493-751 346-545 (567)
120 4b8c_D Glucose-repressible alc 99.7 2.6E-18 9E-23 203.7 3.2 134 452-591 205-338 (727)
121 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 161.3 8.8 132 523-709 11-143 (192)
122 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.3E-22 170.5 8.3 169 448-707 19-187 (263)
123 3sb4_A Hypothetical leucine ri 99.6 2E-16 7E-21 170.1 10.0 219 447-722 100-327 (329)
124 2ell_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 149.0 11.8 137 544-734 23-164 (168)
125 2wfh_A SLIT homolog 2 protein 99.6 5.1E-16 1.7E-20 152.6 9.7 129 548-731 13-141 (193)
126 2je0_A Acidic leucine-rich nuc 99.6 8.6E-16 3E-20 144.4 10.1 129 544-725 16-149 (149)
127 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 144.9 13.0 134 547-734 9-142 (177)
128 2ell_A Acidic leucine-rich nuc 99.6 2.6E-15 8.8E-20 144.3 10.3 135 448-587 24-164 (168)
129 3sb4_A Hypothetical leucine ri 99.6 3.4E-15 1.2E-19 160.5 9.8 285 350-699 24-328 (329)
130 2je0_A Acidic leucine-rich nuc 99.6 5.1E-15 1.7E-19 139.1 9.0 127 448-578 17-149 (149)
131 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.4E-19 143.4 11.5 129 523-707 13-141 (193)
132 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 140.4 12.3 133 522-709 9-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.5 3.6E-16 1.2E-20 154.8 -3.0 155 516-729 14-185 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.5 5.7E-14 1.9E-18 136.0 8.5 81 647-729 67-153 (176)
135 4fdw_A Leucine rich hypothetic 99.5 1.2E-12 4.2E-17 143.5 19.4 220 448-728 157-382 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.2E-18 133.6 9.8 130 446-582 17-153 (176)
137 3g39_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 131.1 11.1 88 646-733 32-119 (170)
138 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.7E-20 151.3 -5.2 132 515-705 43-185 (198)
139 2r9u_A Variable lymphocyte rec 99.4 5.9E-13 2E-17 128.2 11.1 88 646-733 35-122 (174)
140 4fdw_A Leucine rich hypothetic 99.4 3.8E-12 1.3E-16 139.7 18.5 218 449-729 136-358 (401)
141 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 125.2 11.5 109 547-709 11-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 123.1 11.7 106 548-707 15-120 (174)
143 3un9_A NLR family member X1; l 99.3 8.6E-14 2.9E-18 151.3 -3.0 66 647-712 186-259 (372)
144 4fs7_A Uncharacterized protein 99.3 1.7E-10 5.8E-15 127.0 19.8 217 446-726 160-376 (394)
145 4fs7_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 124.6 19.4 287 347-726 67-353 (394)
146 3un9_A NLR family member X1; l 99.2 5.6E-13 1.9E-17 144.8 -3.2 45 645-689 212-260 (372)
147 2ifg_A High affinity nerve gro 99.2 2E-11 6.9E-16 132.1 9.1 88 641-729 28-116 (347)
148 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 130.5 10.3 106 548-707 11-118 (347)
149 4gt6_A Cell surface protein; l 98.9 1.2E-07 4.2E-12 104.0 23.3 63 661-727 327-389 (394)
150 4gt6_A Cell surface protein; l 98.9 1.1E-07 3.7E-12 104.4 22.6 62 663-726 306-367 (394)
151 2ra8_A Uncharacterized protein 98.8 1.2E-09 4E-14 117.6 3.9 83 643-727 251-341 (362)
152 2ra8_A Uncharacterized protein 98.7 6.4E-09 2.2E-13 111.8 5.0 182 469-703 136-341 (362)
153 4h09_A Hypothetical leucine ri 98.6 2.5E-06 8.7E-11 92.9 22.3 53 647-700 289-341 (379)
154 3rw6_A Nuclear RNA export fact 98.6 1.7E-09 5.7E-14 110.2 -5.0 66 145-211 167-234 (267)
155 4h09_A Hypothetical leucine ri 98.5 8.4E-06 2.9E-10 88.8 22.6 154 516-726 190-343 (379)
156 1io0_A Tropomodulin; LRR prote 98.4 4.4E-08 1.5E-12 94.9 0.6 99 218-323 60-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.6E-07 1.2E-11 92.9 5.7 64 643-708 169-236 (267)
158 1io0_A Tropomodulin; LRR prote 98.3 6.4E-08 2.2E-12 93.7 -1.3 128 217-364 30-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 78.8 2.5 85 148-234 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.6 7E-06 2.4E-10 77.2 -0.7 88 123-211 61-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 6.4E-05 2.2E-09 72.1 1.3 120 197-323 41-170 (197)
162 3rfe_A Platelet glycoprotein I 97.0 0.0011 3.8E-08 59.3 6.6 57 672-730 12-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00017 5.9E-09 69.1 0.0 45 117-161 35-83 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0032 1.1E-07 56.2 5.7 57 647-705 11-68 (130)
165 2k1k_A Ephrin type-A receptor 34.1 20 0.00068 23.6 1.8 20 792-811 11-30 (38)
166 2ks1_B Epidermal growth factor 32.9 25 0.00085 24.0 2.1 12 793-804 13-24 (44)
167 2lz0_A Uncharacterized protein 29.0 65 0.0022 26.4 4.6 14 167-180 15-28 (100)
168 2lz0_A Uncharacterized protein 27.0 1.3E+02 0.0044 24.5 6.1 45 460-505 8-52 (100)
169 3ox7_P MH027; urokinase-type p 21.1 32 0.0011 18.7 0.8 10 67-76 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-87 Score=810.67 Aligned_cols=693 Identities=31% Similarity=0.431 Sum_probs=452.9
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCC
Q 048351 32 SIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASL 111 (850)
Q Consensus 32 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l 111 (850)
+..+.++||+||++||+++.||. .+++|+ .+++||+|+||+|+ .++|++++|++. .+
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~-----------------~l 62 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK-----------------PL 62 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS-----------------CC
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC-----------------Cc
Confidence 44568899999999999999988 899997 46899999999998 689999999984 45
Q ss_pred ccc---ccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCc--ccCCCCCCcEEEccCCCCCC
Q 048351 112 RGT---LNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP--LLGNLSRLQYLSLGYNKLLR 186 (850)
Q Consensus 112 ~g~---l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~ 186 (850)
.|. +|+++.++++|+.++++.|.+. .+|..++++++|++|+|++|.++|.+|. .++++++|++|++++|.+..
T Consensus 63 ~g~~~~l~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 140 (768)
T 3rgz_A 63 NVGFSAVSSSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140 (768)
T ss_dssp CEEHHHHHHHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC
T ss_pred CCccCccChhHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC
Confidence 555 5555555555555555555543 2445555555555555555555555555 55555555555555555432
Q ss_pred CCCccccccCCCccEEeCCCCCCCCCcchhhh---hcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCC
Q 048351 187 AGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE---VDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263 (850)
Q Consensus 187 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 263 (850)
......+.++++|++|++++|++++. .+.. +.++++|++|++++|.+++..+ ...+ ++|++|++++|+
T Consensus 141 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l-~~L~~L~Ls~n~ 211 (768)
T 3rgz_A 141 PGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD------VSRC-VNLEFLDVSSNN 211 (768)
T ss_dssp CSSCCSCCCCTTCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB------CTTC-TTCCEEECCSSC
T ss_pred cCCHHHhccCCCCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC------cccC-CcCCEEECcCCc
Confidence 22222234555555555555555543 1222 4455555555555555544333 1222 455555555555
Q ss_pred CCCccchhhhcCCC--------------CCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccc
Q 048351 264 LTASIYPWLFNVSS--------------IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEH 329 (850)
Q Consensus 264 l~~~~~~~l~~l~~--------------ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 329 (850)
+++.+|. +.+++. +|..++.+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..
T Consensus 212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC
T ss_pred CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH
Confidence 5443211 000000 1112334445555555555554444432 4455555555555555444443
Q ss_pred ccc---cc-----ccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhcc
Q 048351 330 FFS---NF-----SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401 (850)
Q Consensus 330 ~~~---~l-----~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~ 401 (850)
++. ++ +.|++.+.+|..++.+++|++|++++|.+++.+|......+++|++|++++|.+++.+|..+ ....
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 367 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-TNLS 367 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH-HHHT
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH-Hhhh
Confidence 321 11 34455556666666666666666666666666665522334566666666666666666665 2221
Q ss_pred CCcCEEEccCCcCcccCCCC-----CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCE
Q 048351 402 LESPGIDISSNHLEGPSPSL-----PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRI 476 (850)
Q Consensus 402 ~~L~~L~l~~N~l~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 476 (850)
.+++.|++++|.+++.+|.. +++|++|++++|.+++.++.... .+++|++|++++|.+++.+|..+..+++|++
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 36666777777766655543 34577777777777766554332 4567777777777777777777777777777
Q ss_pred EEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCc
Q 048351 477 LNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR 556 (850)
Q Consensus 477 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 556 (850)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++. .+++|++|++++|+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS 525 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCc
Confidence 77777777777777777777777777777777777777777777777777777777777777776 57777777777777
Q ss_pred cccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc-------------------ccccccCCCcc
Q 048351 557 FYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI-------------------TFSYAVPSRTT 617 (850)
Q Consensus 557 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~-------------------~~~~~~~~~~~ 617 (850)
+++.+|..++.+++|++|++++|+++|.+|..+.....+..+........ .+.+..+....
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 77777777777777777777777777777777666554433221110000 00000010000
Q ss_pred cCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCee
Q 048351 618 MLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFL 697 (850)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 697 (850)
.++.....++....+.|..+..+..++.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..++++++|++|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 00000000000112345556667788999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCCCCCCCCC
Q 048351 698 DLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEE 765 (850)
Q Consensus 698 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c~~~~ 765 (850)
||++|+++|.+|..++.+++|++||+|+|+++|.||.++++.+|...+|.|||++||.|+. .|....
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999987 886443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.6e-65 Score=612.02 Aligned_cols=569 Identities=28% Similarity=0.366 Sum_probs=417.7
Q ss_pred CCCcccccc--cccCCCCCCEEeCCCCCCCCCCCCccc-CCCCCCCEEeCCCCCCCCCCCcc---cCCCCCCcEEEccCC
Q 048351 109 ASLRGTLNP--ALLKLHYLRHLDLSFNNFSGSQIPMFI-GSLSKLEYLDLFAASFSGPIPPL---LGNLSRLQYLSLGYN 182 (850)
Q Consensus 109 ~~l~g~l~~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N 182 (850)
+.+.|.+|. .++++++|++|||++|.+++. +|..+ +++++|++|+|++|.+++..|.. +.++++|++|++++|
T Consensus 110 n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 445555665 666666666666666666654 45443 56666666666666666655554 556666666666666
Q ss_pred CCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCC
Q 048351 183 KLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYN 262 (850)
Q Consensus 183 ~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N 262 (850)
++.... .+..+++|++|++++|++++. ++. ++.+++|++|++++|.+++..+ ..+..+ ++|++|++++|
T Consensus 189 ~l~~~~---~~~~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l-~~L~~L~Ls~n 257 (768)
T 3rgz_A 189 KISGDV---DVSRCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFS----RAISTC-TELKLLNISSN 257 (768)
T ss_dssp EEESCC---BCTTCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSCCCSCHH----HHTTTC-SSCCEEECCSS
T ss_pred cccccC---CcccCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCcCCCccc----HHHhcC-CCCCEEECCCC
Confidence 542211 124555666666666665553 122 5556666666666666555444 334444 55666666666
Q ss_pred CCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcC-CCCcEEEccCCcccccccccc--ccc-----c
Q 048351 263 NLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNM-FKLEGLSLRGNSLEGVISEHF--FSN-----F 334 (850)
Q Consensus 263 ~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~--~~~-----l 334 (850)
++++.+|. . .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..+ +.+ +
T Consensus 258 ~l~~~~~~----------~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 258 QFVGPIPP----------L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp CCEESCCC----------C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred cccCccCc----------c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 55544332 1 45666666666666666666655543 666666666666666555432 111 1
Q ss_pred ccccCCCCCChh-ccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351 335 SYLKMGPHFPKW-LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH 413 (850)
Q Consensus 335 ~~~~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~ 413 (850)
+.|++.|.+|.. +..+++|++|++++|.+++.+|..+....++|++|++++|.+++.+|..+......+++.|++++|.
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 444555566655 8899999999999999999999988877558999999999999988877633223789999999999
Q ss_pred CcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCC
Q 048351 414 LEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490 (850)
Q Consensus 414 l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 490 (850)
+++.+|.. +++|++|++++|.+++.++.... .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 99888864 67899999999999988776543 568999999999999999999999999999999999999999999
Q ss_pred ccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCC
Q 048351 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLAD 570 (850)
Q Consensus 491 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 570 (850)
.+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+. .+++|++|++++|+++|.+|..+.....
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccc
Confidence 999999999999999999999999999999999999999999999999887 6999999999999999999887665443
Q ss_pred cce----------------------------------------------eecccccCcccCCccccCcccCccccccCcc
Q 048351 571 IQI----------------------------------------------LDLSLNNISGNIPKCFNNFTAMTQERSYNSS 604 (850)
Q Consensus 571 L~~----------------------------------------------L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 604 (850)
+.. ++++.|.++|.+|..+.+++.|+.++...+
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N- 642 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN- 642 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-
Confidence 332 334445666666666666666654433222
Q ss_pred ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351 605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 684 (850)
.+.|..+..++.++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+
T Consensus 643 --------------------------~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 643 --------------------------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp --------------------------CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred --------------------------cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 134555566677888899999999999999999999999999999999999999
Q ss_pred CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc-Cccc
Q 048351 685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN-LSGK 731 (850)
Q Consensus 685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~ 731 (850)
|..++++++|++||+++|+++|.||.. ..+..+....+.+|+ ++|.
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred ChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 999999999999999999999999975 334445555667775 6653
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-57 Score=543.47 Aligned_cols=575 Identities=20% Similarity=0.148 Sum_probs=390.1
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL 202 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 202 (850)
+++++|+|++|.+++. .+..++++++|++|+|++|.+++..|..|+++++|++|++++|++. ..+...++++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 5777777777777764 4456777777777777777777777777777777777777777753 2223347777777777
Q ss_pred eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCC
Q 048351 203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP 282 (850)
Q Consensus 203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l 282 (850)
++++|++++.+ +..++++++|++|++++|.+++.++ ..+.++ ++|++|++++|++++..+..+. +
T Consensus 103 ~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~~~--------~ 167 (680)
T 1ziw_A 103 HLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKL----GTQVQL-ENLQELLLSNNKIQALKSEELD--------I 167 (680)
T ss_dssp ECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCC----CSSSCC-TTCCEEECCSSCCCCBCHHHHG--------G
T ss_pred ECCCCccCccC--hhHccccCCCCEEECCCCcccccCc----hhhccc-ccCCEEEccCCcccccCHHHhh--------c
Confidence 77777777652 2567777777777777777776655 344454 7777777777777765444321 1
Q ss_pred CCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCc
Q 048351 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG 362 (850)
Q Consensus 283 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~ 362 (850)
..+++|++|++++|++++..|..+..+++|+.|+++++.+.+..... ++..+ ..++|+.|++++|.
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-------------~~~~l-~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK-------------LCLEL-ANTSIRNLSLSNSQ 233 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHH-------------HHHHH-TTSCCCEEECTTSC
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHH-------------HHHHh-hhccccEEEccCCc
Confidence 23467777777777777777777777777777777777765432221 11111 23667777777777
Q ss_pred CCCCCchhHhhcC-cCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCc
Q 048351 363 ISDSIPDWFSDTS-HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGP 438 (850)
Q Consensus 363 l~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~ 438 (850)
+++..|.++.... ++|++|++++|.+++..|..+ ... ++++.|++++|.+++..|.. +++|++|++++|...+.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccc-cCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 7766666665432 237777777777776666665 333 66777777777777666543 55677777776655432
Q ss_pred c-----cc---ccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc--CCCccccc--cCccEEeccCC
Q 048351 439 I-----SF---LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK--IPNSCGYL--QKMLTLSLHHN 506 (850)
Q Consensus 439 ~-----~~---~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~Ls~N 506 (850)
+ +. .....+++|++|++++|.+++..+..|.++++|++|++++|.+.+. .+..|..+ ++|+.|++++|
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 2 11 1222456777777777777777777777777777777777764322 22233332 46777777777
Q ss_pred ccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc--cc
Q 048351 507 NFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS--GN 584 (850)
Q Consensus 507 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~ 584 (850)
++++..|..|..+++|+.|++++|++++.+|...+.++++|++|++++|++++..+..+..+++|+.|++++|.++ +.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 7777777777777777777777777776666544446777777777777777777777777777777777777775 45
Q ss_pred CCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh---
Q 048351 585 IPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP--- 661 (850)
Q Consensus 585 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--- 661 (850)
+|..+.++++|+.+....+. +.+.....+..++.|++|+|++|++++..+
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~---------------------------l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNN---------------------------IANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSC---------------------------CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred CCcccccCCCCCEEECCCCC---------------------------CCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 66777777777665443321 112222334556677889999998875422
Q ss_pred -----hhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCC
Q 048351 662 -----EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736 (850)
Q Consensus 662 -----~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 736 (850)
..+.++++|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|++|++++|++++..|...
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 237788899999999999986555578889999999999999998777778888999999999999987655422
Q ss_pred --cCCCcCccccCCCCCCCCCCC
Q 048351 737 --QLQSFNASVYDGNPELCGLPL 757 (850)
Q Consensus 737 --~~~~~~~~~~~gN~~lc~~~~ 757 (850)
.+..+....+.|||+.|+|+.
T Consensus 605 ~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccccccCEEEccCCCcccCCcc
Confidence 356666777889999998874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-56 Score=535.54 Aligned_cols=568 Identities=20% Similarity=0.196 Sum_probs=349.8
Q ss_pred CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351 109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG 188 (850)
Q Consensus 109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 188 (850)
+.+++..+.+|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+.+|+++++|++|++++|++. ..
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~ 112 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KI 112 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-cc
Confidence 567776677899999999999999999986 7888999999999999999999766668999999999999999863 33
Q ss_pred CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCcc
Q 048351 189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI 268 (850)
Q Consensus 189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 268 (850)
.+..++++++|++|++++|.+++. .+..+.++++|++|++++|.+++.++.. ...... ++|++|++++|++++..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~-~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEE--LDIFAN-SSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHH--HGGGTT-CEESEEECTTCCCCCBC
T ss_pred ChhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHH--hhcccc-ccccEEECCCCcccccC
Confidence 445689999999999999999886 4567889999999999999998876511 112344 89999999999999875
Q ss_pred chhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh---cCCCCcEEEccCCccccccccccccccccccCCCCCCh
Q 048351 269 YPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ---NMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345 (850)
Q Consensus 269 ~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~ 345 (850)
|.. +..+++|+.|++++|.+.+.....+. ..++|+.|++++|.+++..+..
T Consensus 188 ~~~----------~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~---------------- 241 (680)
T 1ziw_A 188 PGC----------FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT---------------- 241 (680)
T ss_dssp TTG----------GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT----------------
T ss_pred hhh----------hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH----------------
Confidence 544 44455555555555554432222111 2345555555555555443322
Q ss_pred hccCCC--CCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCccc-----C
Q 048351 346 WLQTQK--HFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP-----S 418 (850)
Q Consensus 346 ~l~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~-----~ 418 (850)
+..++ +|+.|++++|.+++..+..+... ++|++|++++|.+++..|..+ ... .+++.|++++|...+. +
T Consensus 242 -~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 242 -FLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSL-HGL-FNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp -TGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTT-TTC-TTCCEEECTTCBCCC------C
T ss_pred -hhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhh-cCC-CCccEEeccchhhhcccccccc
Confidence 22222 24555555555444444433322 345555555555444444444 222 4444455444433221 1
Q ss_pred C-------CCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC--CCcccccC--CCCCEEEcCCCccccc
Q 048351 419 P-------SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK--LPDCWLQF--NMLRILNLANNNFSGK 487 (850)
Q Consensus 419 ~-------~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l--~~L~~L~Ls~N~l~~~ 487 (850)
| ..+++|++|++++|.+++..+.... .+++|++|++++|.+... .+..|..+ ++|+.|++++|++++.
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 1 1134445555555554443332211 334455555555443211 11122221 3455555555555544
Q ss_pred CCCccccccCccEEeccCCccccCCc-hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc--cccCcC
Q 048351 488 IPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY--GKIPFQ 564 (850)
Q Consensus 488 ~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~ 564 (850)
.|..+..+++|+.|++++|.+++.+| ..+.++++|++|++++|++++..+..+. .+++|++|++++|.+. +.+|..
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcc
Confidence 44445555555555555555544333 3444455555555555554422222222 3455555555555443 334444
Q ss_pred cCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccc
Q 048351 565 LCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLG 644 (850)
Q Consensus 565 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 644 (850)
+..+++|++|++++|++++..|..+.++++|+.+....+....+.... ..+.....+..++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA-------------------NPGGPIYFLKGLS 536 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT-------------------STTSCCCTTTTCT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh-------------------ccCCcchhhcCCC
Confidence 455555555555555555444444444444444433222110000000 0011122345677
Q ss_pred cccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccccc-CCCCCCEEEc
Q 048351 645 LVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS-QVNRLSVMDL 723 (850)
Q Consensus 645 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l 723 (850)
.|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+++++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 889999999999966566799999999999999999988778889999999999999999999998887 7899999999
Q ss_pred CCCcCcccCCC
Q 048351 724 SHNNLSGKIPT 734 (850)
Q Consensus 724 s~N~l~g~iP~ 734 (850)
++|++.+..+.
T Consensus 617 ~~N~~~c~c~~ 627 (680)
T 1ziw_A 617 RFNPFDCTCES 627 (680)
T ss_dssp TTCCCCBCCCC
T ss_pred cCCCcccCCcc
Confidence 99999988764
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-55 Score=537.47 Aligned_cols=571 Identities=22% Similarity=0.217 Sum_probs=298.6
Q ss_pred EeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCC
Q 048351 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC 207 (850)
Q Consensus 128 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n 207 (850)
.|.++++++ .+|. -.++|++|||++|.+++..|..|.++++|++|+|++|.......+..|.++++|++|+|++|
T Consensus 9 ~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 444555555 2444 23455555555555555555555555555555555554322222334555555556666555
Q ss_pred CCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCC
Q 048351 208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287 (850)
Q Consensus 208 ~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~ 287 (850)
.+++. .+..+.++++|++|+|++|.+++..+.. ..+.++ ++|++|+|++|.+++..+ +..++++++
T Consensus 84 ~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L-~~L~~L~Ls~N~l~~~~~---------~~~~~~L~~ 149 (844)
T 3j0a_A 84 KIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNL-KALTRLDLSKNQIRSLYL---------HPSFGKLNS 149 (844)
T ss_dssp CCCEE--CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSC-SSCCEEEEESCCCCCCCC---------CGGGGTCSS
T ss_pred cCccc--CHhHccCCcccCEeeCcCCCCCcccccC--cccccc-CCCCEEECCCCccccccc---------chhHhhCCC
Confidence 55553 2455556666666666666665533210 113333 666666666666655321 123556666
Q ss_pred CcEEEccCCcCCcccchhhhcC--CCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCC
Q 048351 288 LRTLTLSDNELDGEIPKFFQNM--FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISD 365 (850)
Q Consensus 288 L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 365 (850)
|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..+..+ . ..+..+.+ ..|+.|++++|.+++
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~---------~~~~~~~~-~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-G---------KCMNPFRN-MVLEILDVSGNGWTV 218 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-C---------SSSCTTTT-CCBSEEBCSSCCSST
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch-h---------hcCCcccc-CceeEEecCCCcCch
Confidence 6666666666666666666655 666666666666655443320 0 00001111 136666666666666
Q ss_pred CCchhHhhcC--cCCCEEecccC---------cCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CCCCcEEEcc
Q 048351 366 SIPDWFSDTS--HKLADLNFSHN---------QMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLS 431 (850)
Q Consensus 366 ~~~~~~~~~~--~~L~~L~Ls~N---------~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls 431 (850)
..+..+.... ..++.+.++++ .+.+..+..+.+....+++.|++++|.+++..+.. +++|+.|+++
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 6555554332 23555555422 22222233332332356666777777666655543 4566677777
Q ss_pred CCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccC
Q 048351 432 KNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE 511 (850)
Q Consensus 432 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 511 (850)
+|.+++..+.... .+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus 299 ~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~- 376 (844)
T 3j0a_A 299 YNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT- 376 (844)
T ss_dssp SCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-
T ss_pred CCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-
Confidence 7766655443222 44667777777777766666677777777777777777766666666777777777777777663
Q ss_pred CchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCc-cc
Q 048351 512 LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPK-CF 589 (850)
Q Consensus 512 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~ 589 (850)
++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+
T Consensus 377 i~----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 377 IH----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp CS----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred cc----CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 22 2566777777777776 55542 3466777777777664321 1244666777777777777654332 12
Q ss_pred cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcccc
Q 048351 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG 669 (850)
Q Consensus 590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 669 (850)
..+++|+.+....+...... ..+.....+..++.|+.|+|++|++++.+|..|.++++
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~----------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAW----------------------ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSC----------------------CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred ccCCccccccCCCCcccccc----------------------ccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 22333322111110000000 00011111223344455555555555555555555555
Q ss_pred CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCC
Q 048351 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGN 749 (850)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 749 (850)
|+.|+|++|++++.+|..+. ++|+.|||++|++++.+|..|. +|+++++++|++.|..+ +..|......+|
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~----~~~f~~~~~~~~ 576 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE----LSTFINWLNHTN 576 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS----CCSHHHHHHHTT
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc----cHHHHHHHHhcC
Confidence 55555555555544444443 4555555555555555554432 34555555555554433 222222223344
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 048351 750 PELCGLPLPSKCWDEESAPGP 770 (850)
Q Consensus 750 ~~lc~~~~~~~c~~~~~~~~~ 770 (850)
..+||.+....|..|....+.
T Consensus 577 ~~~~~~~~~~~C~~p~~~~g~ 597 (844)
T 3j0a_A 577 VTIAGPPADIYCVYPDSFSGV 597 (844)
T ss_dssp TTTCCCGGGCCCSSCSSSCSC
T ss_pred cccccccccCccCCchhhCCC
Confidence 444555555678777665554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-53 Score=500.51 Aligned_cols=523 Identities=20% Similarity=0.189 Sum_probs=362.7
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI 193 (850)
Q Consensus 114 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 193 (850)
.+|..+. +++++|||++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 101 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred cCcCCCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence 4555554 3789999999999875 6778899999999999999999888889999999999999999863 3334568
Q ss_pred ccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhh
Q 048351 194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF 273 (850)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~ 273 (850)
+++++|++|++++|.+++.. +..+..+++|++|++++|.+++... ..+..+ ++|++|++++|++++..+..
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~-- 172 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKL----PKGFPT-EKLKVLDFQNNAIHYLSKED-- 172 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCC----CTTCCC-TTCCEEECCSSCCCEECHHH--
T ss_pred cccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccccCc----ccccCC-cccCEEEcccCcccccChhh--
Confidence 88889999999999888752 3557888888888888888877543 233444 78888888888887654443
Q ss_pred cCCCCCCCCCCCCCCc--EEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCC
Q 048351 274 NVSSIPDAPGPMISLR--TLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQK 351 (850)
Q Consensus 274 ~l~~ip~~l~~l~~L~--~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~ 351 (850)
++.+++|+ .|++++|.+++..|..+.. .+|+.|++++|.... ..+..+.
T Consensus 173 --------~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~--------------------~~~~~l~ 223 (606)
T 3t6q_A 173 --------MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLL--------------------VIFKGLK 223 (606)
T ss_dssp --------HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHH--------------------HHHHHTT
T ss_pred --------hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHH--------------------HHhhhcc
Confidence 44556677 7888888888766665543 578888888776211 1122233
Q ss_pred CCCEEEccCCcCC-----CCCchhHhhcC-cCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC--CC
Q 048351 352 HFSVLDISSAGIS-----DSIPDWFSDTS-HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL--PS 423 (850)
Q Consensus 352 ~L~~L~Ls~n~l~-----~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~--~~ 423 (850)
+++...+....+. ...+..+.... .+++.|++++|.+++..+..+ ... ++++.|++++|.++..++.. ++
T Consensus 224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l-~~L~~L~l~~n~l~~lp~~l~~l~ 301 (606)
T 3t6q_A 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCF-SGLQELDLTATHLSELPSGLVGLS 301 (606)
T ss_dssp TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTC-TTCSEEECTTSCCSCCCSSCCSCT
T ss_pred ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-ccc-cCCCEEeccCCccCCCChhhcccc
Confidence 3322222221111 11111121111 157777777777776666655 333 67777777777776433222 45
Q ss_pred CCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCc-ccccCCCCCEEEcCCCcccccC--CCccccccCccE
Q 048351 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD-CWLQFNMLRILNLANNNFSGKI--PNSCGYLQKMLT 500 (850)
Q Consensus 424 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~ 500 (850)
+|++|++++|.+++..+.... .+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|++
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred cCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence 677777777777665443222 446777777777777655544 4677777777777777777654 666777777777
Q ss_pred EeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeeccccc
Q 048351 501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN 580 (850)
Q Consensus 501 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 580 (850)
|++++|++.+..|..+..+++|++|++++|++++..|...+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 77777777776677777777777777777777755555433467777777777777777777777777777777777777
Q ss_pred CcccC-C--ccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351 581 ISGNI-P--KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG 657 (850)
Q Consensus 581 l~~~~-p--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 657 (850)
+++.. | ..+. .++.|+.|++++|+++
T Consensus 461 l~~~~~~~~~~~~---------------------------------------------------~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 461 FPKGNIQKTNSLQ---------------------------------------------------TLGRLEILVLSFCDLS 489 (606)
T ss_dssp CGGGEECSSCGGG---------------------------------------------------GCTTCCEEECTTSCCC
T ss_pred CCccccccchhhc---------------------------------------------------cCCCccEEECCCCccC
Confidence 76521 1 2222 3334478888888888
Q ss_pred CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351 658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
+..|..|+.+++|+.|+|++|++++.+|..+.+++.| .||+++|++++.+|..+..+++|++|++++|+++|..+
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8888888888888888888888888888888888888 88888888888888888888888888888888887655
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-55 Score=515.93 Aligned_cols=517 Identities=17% Similarity=0.210 Sum_probs=320.3
Q ss_pred CCcHHHHHHHHHhhhcCCCCC--------CCCCCCCCCCCCCCCccc---cceEecCCCCCEEEEEcCCCCCcccchhhh
Q 048351 34 RCIEEERKALLKFKQGLVDEF--------GFLSSWGSEGEKKDCCNW---RGVRCSNQTGHVKVLDLHGTGRVKVLDIQT 102 (850)
Q Consensus 34 ~~~~~~~~~Ll~~k~~~~~~~--------~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~ 102 (850)
+....|+.||.++|+++.++. ....+|. .+++||.| .||+|+.. +||++++|++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~----------- 90 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG----------- 90 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----------
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----------
Confidence 345689999999999986442 1234787 56899999 99999864 8999999998
Q ss_pred hccCCCCCCcccccccccCCCCCCEEeCCCCCCCCC-----------CCCcccCCCCCCCEEeCCCCCCCCCCCcccCC-
Q 048351 103 RVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGS-----------QIPMFIGSLSKLEYLDLFAASFSGPIPPLLGN- 170 (850)
Q Consensus 103 ~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~- 170 (850)
++++|.+|++++++++|++|||++|.+... .+|... +..|+ +++++|.+.+.+|..+..
T Consensus 91 ------~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 91 ------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp ------SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHH
T ss_pred ------cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHH
Confidence 589999999999999999999999976211 133332 44566 677777777766665542
Q ss_pred CCCCcEEEccCCCCCCCCCccccccCCCccEEeCC--CCCCCCCcchhhhhcCCCCCcEEEccCCCCCCC-CCccccccc
Q 048351 171 LSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLS--SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ-PTIHRSFSH 247 (850)
Q Consensus 171 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~ 247 (850)
+.++..+++....+.. .....++.+.+. .|++++ +|..++++++|++|+|++|.+++. .+. .
T Consensus 162 ~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l~~~~~~~----~- 226 (636)
T 4eco_A 162 IKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICE----A- 226 (636)
T ss_dssp HHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSS----S-
T ss_pred HHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc---CCHHHhcccCCCEEECcCCccccccccc----c-
Confidence 2223333332221100 011112222222 344444 344555666666666666665552 000 0
Q ss_pred cCCCCcccEEEccCCCCCCccchhhhc-CCCCCCCCC--CCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCc-cc
Q 048351 248 LNSSPSLETLGLSYNNLTASIYPWLFN-VSSIPDAPG--PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNS-LE 323 (850)
Q Consensus 248 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~-l~~ip~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~ 323 (850)
.+|..... ...+|+.++ ++++|++|++++|++.+.+|..++++++|++|++++|+ ++
T Consensus 227 -------------------~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 227 -------------------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp -------------------CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred -------------------ccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 00000000 000344444 55555555555555555555555555555555555555 55
Q ss_pred c-ccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCch--hHhhcCcCCCEEecccCcCcccCChhhhhhc
Q 048351 324 G-VISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD--WFSDTSHKLADLNFSHNQMTGRFPNYISSMF 400 (850)
Q Consensus 324 ~-~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~ 400 (850)
+ .+|..+ ..+ ..+..+++|++|++++|.++ .+|. .+... ++|++|++++|.++|.+| .+ ..
T Consensus 288 ~~~lp~~~-~~L----------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~-~~- 351 (636)
T 4eco_A 288 GEQLKDDW-QAL----------ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AF-GS- 351 (636)
T ss_dssp HHHHHHHH-HHH----------HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CC-EE-
T ss_pred cccchHHH-Hhh----------hccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hh-CC-
Confidence 4 333320 000 00112256666666666666 4555 44443 567777777777776666 33 11
Q ss_pred cCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCC-CCEEEc
Q 048351 401 ILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNM-LRILNL 479 (850)
Q Consensus 401 ~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L 479 (850)
+++|++|++++|.++ .+|..+..+++ |++|++
T Consensus 352 ----------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 352 ----------------------------------------------EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp ----------------------------------------------EEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred ----------------------------------------------CCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 134555666666555 55555666666 666666
Q ss_pred CCCcccccCCCcccccc--CccEEeccCCccccCCchhhc-------CCCCcCeeccccccceeecchhHHhcCCCCCEE
Q 048351 480 ANNNFSGKIPNSCGYLQ--KMLTLSLHHNNFSGELPSLLK-------NFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550 (850)
Q Consensus 480 s~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L 550 (850)
++|.++ .+|..+..++ +|++|++++|++++.+|..+. .+++|++|++++|+++ .+|..++..+++|++|
T Consensus 385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSI 462 (636)
T ss_dssp CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEE
T ss_pred cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEE
Confidence 666666 5555555433 566666666666666666555 5667777777777776 6666666556777777
Q ss_pred EccCCccccccCcCcCC--------CCCcceeecccccCcccCCcccc--CcccCccccccCccccccccccCCCcccCc
Q 048351 551 DLRSNRFYGKIPFQLCH--------LADIQILDLSLNNISGNIPKCFN--NFTAMTQERSYNSSAITFSYAVPSRTTMLP 620 (850)
Q Consensus 551 ~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (850)
++++|+++ .+|..+.. +++|+.|++++|+++ .+|..+. .+++|
T Consensus 463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L------------------------- 515 (636)
T 4eco_A 463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL------------------------- 515 (636)
T ss_dssp ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-------------------------
T ss_pred ECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-------------------------
Confidence 77777776 44443322 227888888888887 5665554 44444
Q ss_pred cceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEec------CCCcCccCCCccccccCCC
Q 048351 621 VHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL------SRNNLTGYITPKIGQLQSL 694 (850)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L 694 (850)
+.|+|++|++++ +|..++.+++|+.|+| ++|++.+.+|..++++++|
T Consensus 516 --------------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 516 --------------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp --------------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred --------------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 778888888886 7778888888888888 5688899999999999999
Q ss_pred CeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351 695 DFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 695 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
++|+|++|++ +.+|..+. ++|++||+++|++..
T Consensus 569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9999999999 67888776 799999999998874
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-53 Score=500.06 Aligned_cols=518 Identities=19% Similarity=0.151 Sum_probs=339.1
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI 193 (850)
Q Consensus 114 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 193 (850)
.+|..+. ++|++|+|++|.+++. .+..++++++|++|+|++|.+++..|.+|+++++|++|+|++|++. ...+..+
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~ 100 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSF 100 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSS
T ss_pred cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhc
Confidence 3555443 7888888888888864 5567888888888888888888877888888888888888888753 3345568
Q ss_pred ccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCC-CCCccccccccCCCCcccEEEccCCCCCCccchhh
Q 048351 194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL-QPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWL 272 (850)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l 272 (850)
+++++|++|++++|.+++.+ +..++++++|++|++++|.+++ ..| ..+.++ ++|++|++++|++++..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~lp----~~~~~l-~~L~~L~Ls~n~l~~~~~~~- 172 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLE--SFPIGQLITLKKLNVAHNFIHSCKLP----AYFSNL-TNLVHVDLSYNYIQTITVND- 172 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSS--SSCCTTCTTCCEEECCSSCCCCCCCC----GGGGTC-TTCCEEECCSSCCCEECTTT-
T ss_pred CCcccCCEEEccCCcccccc--ccccCCCCCCCEEeCCCCcccceech----HhHhhc-CCCCEEEccCCcceecChhh-
Confidence 88888888888888887753 2457888888888888888875 334 455566 88888888888887753333
Q ss_pred hcCCCCCCCCCCCCC----CcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhcc
Q 048351 273 FNVSSIPDAPGPMIS----LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQ 348 (850)
Q Consensus 273 ~~l~~ip~~l~~l~~----L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~ 348 (850)
++.+++ +++|++++|.+++..+..+... +|++|++++|.+.+.. +|.++.
T Consensus 173 ---------~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~----------------~~~~~~ 226 (606)
T 3vq2_A 173 ---------LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI----------------MKTCLQ 226 (606)
T ss_dssp ---------THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHH----------------HHHHHH
T ss_pred ---------hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhH----------------HHHHhc
Confidence 333333 3478888888886555544444 7888888888776432 233467
Q ss_pred CCCCCCEEEccCCcCCCC------C---chhHhhcCcCCCEEec-ccCcCcccCChhhhhhccCCcCEEEccCCcCcccC
Q 048351 349 TQKHFSVLDISSAGISDS------I---PDWFSDTSHKLADLNF-SHNQMTGRFPNYISSMFILESPGIDISSNHLEGPS 418 (850)
Q Consensus 349 ~l~~L~~L~Ls~n~l~~~------~---~~~~~~~~~~L~~L~L-s~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~ 418 (850)
+++.|+.+++..+.+.+. . +..+... .++.+++ ..|.+.+.+|. + ... .+++.+++++|.++...
T Consensus 227 ~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l--~l~~l~l~~~~~~~~~~~~-~-~~l-~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV--TIDEFRLTYTNDFSDDIVK-F-HCL-ANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS--EEEEEEECCCTTCCGGGGS-C-GGG-TTCSEEEEESCCCCCCC
T ss_pred cccccccccccccccccCCcccccChHHhhhhhhc--cHhheeccccccccccccc-c-ccC-CCCCEEEecCccchhhh
Confidence 777777777765444321 1 1111111 3455555 55666666665 3 222 66777777777765433
Q ss_pred CCC--CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc--CCCcccc
Q 048351 419 PSL--PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK--IPNSCGY 494 (850)
Q Consensus 419 ~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~ 494 (850)
.. +++|++|++++|.+ +.++.. .+++|++|++++|...+.. .+..+++|++|++++|.+++. +|..+..
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred -hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 22 45666666666666 444432 3466666666666443333 345666666666666666654 2555666
Q ss_pred ccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCccee
Q 048351 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL 574 (850)
Q Consensus 495 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 574 (850)
+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 6666666666666653 445666666666666666666644442222356666666666666666666666666666666
Q ss_pred ecccccCcc-cCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351 575 DLSLNNISG-NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653 (850)
Q Consensus 575 ~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 653 (850)
++++|++++ .+|..+.++++| +.|+|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~ 482 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNL---------------------------------------------------TFLDLSK 482 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTC---------------------------------------------------CEEECTT
T ss_pred ECCCCcCCCcchHHhhccCCCC---------------------------------------------------CEEECCC
Confidence 666666665 245555444444 6777777
Q ss_pred CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC-CCCEEEcCCCcCcccC
Q 048351 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN-RLSVMDLSHNNLSGKI 732 (850)
Q Consensus 654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~i 732 (850)
|++++..|..++++++|+.|+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ +|++|++++|++.|..
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 7777777777777777777777777777777777777777777777777777 5566677765 4777777777777665
Q ss_pred CC
Q 048351 733 PT 734 (850)
Q Consensus 733 P~ 734 (850)
|.
T Consensus 562 ~~ 563 (606)
T 3vq2_A 562 EH 563 (606)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-52 Score=492.49 Aligned_cols=509 Identities=19% Similarity=0.137 Sum_probs=423.4
Q ss_pred CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351 109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG 188 (850)
Q Consensus 109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 188 (850)
+.+++..+.+|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++...
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~- 119 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL- 119 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS-
T ss_pred CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc-
Confidence 577777788999999999999999999975 678899999999999999999998899999999999999999997433
Q ss_pred CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCc----ccEEEccCCCC
Q 048351 189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS----LETLGLSYNNL 264 (850)
Q Consensus 189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~----L~~L~Ls~N~l 264 (850)
.+..++++++|++|++++|.+++. .+|..++++++|++|++++|.+++.++ ..+..+ ++ +++|++++|.+
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITV----NDLQFL-RENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECT----TTTHHH-HHCTTCCCEEECTTCCC
T ss_pred cccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecCh----hhhhhh-hccccccceeeccCCCc
Confidence 334589999999999999999864 257889999999999999999998766 334333 44 45899999999
Q ss_pred CCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCC-cccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCC
Q 048351 265 TASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD-GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHF 343 (850)
Q Consensus 265 ~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~ 343 (850)
++. |.......+|++|++++|.++ +.+|..+.++++|+.+++..+.+.+..... .+.+..
T Consensus 194 ~~~-----------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~--------~~~~~~ 254 (606)
T 3vq2_A 194 DFI-----------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE--------IFEPSI 254 (606)
T ss_dssp CEE-----------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS--------CCCGGG
T ss_pred cee-----------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc--------ccChHH
Confidence 863 333334448999999999997 467888999999999998776654321110 011111
Q ss_pred ChhccCCCCCCEEEc-cCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCC-C
Q 048351 344 PKWLQTQKHFSVLDI-SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPS-L 421 (850)
Q Consensus 344 p~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~-~ 421 (850)
+..+..+ .++.+++ ..+.+.+.+|. +. .+++|+.|++++|.+.. +| .+ ... .+++.|++++|.+ +.+|. .
T Consensus 255 ~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~-l~-~l-~~~-~~L~~L~l~~n~l-~~lp~~~ 326 (606)
T 3vq2_A 255 MEGLCDV-TIDEFRLTYTNDFSDDIVK-FH-CLANVSAMSLAGVSIKY-LE-DV-PKH-FKWQSLSIIRCQL-KQFPTLD 326 (606)
T ss_dssp GTTGGGS-EEEEEEECCCTTCCGGGGS-CG-GGTTCSEEEEESCCCCC-CC-CC-CTT-CCCSEEEEESCCC-SSCCCCC
T ss_pred hhhhhhc-cHhheeccccccccccccc-cc-cCCCCCEEEecCccchh-hh-hc-ccc-ccCCEEEcccccC-cccccCC
Confidence 2222333 4667777 77888888887 44 45799999999999974 55 44 233 7899999999999 55554 4
Q ss_pred CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC--CCcccccCCCCCEEEcCCCcccccCCCccccccCcc
Q 048351 422 PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK--LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKML 499 (850)
Q Consensus 422 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 499 (850)
+++|++|++++|...+.++ ...+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 327 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCccceeeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 7899999999997666543 22568999999999999866 48889999999999999999985 668899999999
Q ss_pred EEeccCCccccCCc-hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccc-ccCcCcCCCCCcceeecc
Q 048351 500 TLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG-KIPFQLCHLADIQILDLS 577 (850)
Q Consensus 500 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls 577 (850)
+|++++|++.+..| ..+..+++|++|++++|++++.+|..+. .+++|++|++++|.+++ .+|..+..+++|++|+++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 99999999998877 6899999999999999999987887776 79999999999999998 479999999999999999
Q ss_pred cccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351 578 LNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG 657 (850)
Q Consensus 578 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 657 (850)
+|++++..|..+.++++| ++|+|++|+++
T Consensus 482 ~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~N~l~ 510 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRL---------------------------------------------------QLLNMSHNNLL 510 (606)
T ss_dssp TSCCCEECTTTTTTCTTC---------------------------------------------------CEEECCSSCCS
T ss_pred CCcCCccChhhhcccccC---------------------------------------------------CEEECCCCcCC
Confidence 999999888888777666 89999999999
Q ss_pred CCChhhhhccccCCeEecCCCcCccCCCccccccC-CCCeeeCCCCcCcccCc
Q 048351 658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ-SLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p 709 (850)
+.+|..++++++|+.|+|++|+++ .+|..+..++ +|++|++++|.+.+..+
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999999999 5777799987 69999999999997554
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-52 Score=488.45 Aligned_cols=511 Identities=18% Similarity=0.143 Sum_probs=423.8
Q ss_pred CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351 109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG 188 (850)
Q Consensus 109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 188 (850)
+.+++..|.+|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|..|+++++|++|++++|++.. .
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l 120 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-I 120 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-G
T ss_pred CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-C
Confidence 577877788999999999999999999975 78899999999999999999999999999999999999999999643 2
Q ss_pred CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCccc--EEEccCCCCCC
Q 048351 189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE--TLGLSYNNLTA 266 (850)
Q Consensus 189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~--~L~Ls~N~l~~ 266 (850)
.+..++++++|++|++++|.+++.+ ...+..+++|++|++++|.+++..+ ..+..+ ++|+ .|++++|++++
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIHYLSK----EDMSSL-QQATNLSLNLNGNDIAG 193 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCCC--CCTTCCCTTCCEEECCSSCCCEECH----HHHHTT-TTCCSEEEECTTCCCCE
T ss_pred CcchhccCCcccEEECCCCcccccC--cccccCCcccCEEEcccCcccccCh----hhhhhh-cccceeEEecCCCccCc
Confidence 2345899999999999999999852 1344559999999999999997766 455566 8888 89999999997
Q ss_pred ccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChh
Q 048351 267 SIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346 (850)
Q Consensus 267 ~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~ 346 (850)
..|. .+ ...+|++|++++|. .++..+..+.+++...+....+.+... ..+.+.....
T Consensus 194 ~~~~----------~~-~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~---------~~i~~~~~~~ 250 (606)
T 3t6q_A 194 IEPG----------AF-DSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDD---------EDISPAVFEG 250 (606)
T ss_dssp ECTT----------TT-TTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCC---------CCCCGGGGGG
T ss_pred cChh----------Hh-hhccccccccCCch---hHHHHhhhccccchhheechhhccccc---------cccChhHhch
Confidence 5333 23 34689999999997 466677777776665555443332111 1111111111
Q ss_pred ccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CC
Q 048351 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PS 423 (850)
Q Consensus 347 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~ 423 (850)
+... +|+.|++++|.+++..+..+... ++|++|++++|.++ .+|..+ ... ++++.|++++|.+++..|.. ++
T Consensus 251 l~~~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~lp~~l-~~l-~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 251 LCEM-SVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHLS-ELPSGL-VGL-STLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGS-EEEEEECTTCCCSSCCTTTTTTC-TTCSEEECTTSCCS-CCCSSC-CSC-TTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred hhcC-ceeEEEeecCccCccCHHHhccc-cCCCEEeccCCccC-CCChhh-ccc-ccCCEEECccCCcCcCchhhhhccC
Confidence 2222 78899999999988777766554 68999999999988 667666 333 78999999999998876643 78
Q ss_pred CCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCC--CcccccCCCCCEEEcCCCcccccCCCccccccCccEE
Q 048351 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKL--PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL 501 (850)
Q Consensus 424 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 501 (850)
+|++|++++|.+.+.++......+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 89999999999988777655556799999999999998765 7789999999999999999999999999999999999
Q ss_pred eccCCccccCCch-hhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccc---cCcCcCCCCCcceeecc
Q 048351 502 SLHHNNFSGELPS-LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK---IPFQLCHLADIQILDLS 577 (850)
Q Consensus 502 ~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls 577 (850)
++++|++++..|. .+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 9999999977654 489999999999999999966676665 699999999999999873 23568899999999999
Q ss_pred cccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351 578 LNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG 657 (850)
Q Consensus 578 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 657 (850)
+|++++..|..+.++++| +.|+|++|+++
T Consensus 485 ~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~N~l~ 513 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMM---------------------------------------------------NHVDLSHNRLT 513 (606)
T ss_dssp TSCCCEECTTTTTTCTTC---------------------------------------------------CEEECCSSCCC
T ss_pred CCccCccChhhhccccCC---------------------------------------------------CEEECCCCccC
Confidence 999999888888777666 89999999999
Q ss_pred CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351 658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
+..|..+.+++.| .|+|++|++++.+|..++.+++|+.|++++|.+.+..+
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999 99999999999999999999999999999999997655
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-51 Score=502.16 Aligned_cols=534 Identities=21% Similarity=0.151 Sum_probs=406.5
Q ss_pred ccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCC-CcccCCCC
Q 048351 70 CNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQI-PMFIGSLS 148 (850)
Q Consensus 70 c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~ 148 (850)
|.|..|.+ ...+++.+||++ +.+++..+.+|.++++|++|||++|.+.+. + |..+++++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~-----------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~ 73 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF-----------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLP 73 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES-----------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCT
T ss_pred CCCCCCCC--CCCCcCEEECCC-----------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCC
Confidence 56777776 356788888877 577888888999999999999999976654 5 77899999
Q ss_pred CCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC-CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcE
Q 048351 149 KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG-NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227 (850)
Q Consensus 149 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 227 (850)
+|++|+|++|.+++..|..|+++++|++|+|++|.+.... ...++.++++|++|+|++|.+++.. .+..++++++|++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKS 152 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCE
Confidence 9999999999999988999999999999999999874322 2234889999999999999998862 2357899999999
Q ss_pred EEccCCCCCCCCCccccccccCC-CCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhh
Q 048351 228 LYLEQCDLQLQPTIHRSFSHLNS-SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFF 306 (850)
Q Consensus 228 L~L~~n~l~~~~~~~~~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 306 (850)
|++++|.+++..+ ..+..+ .++|+.|++++|.+.+..|..+..+. ..+.. ..|++|++++|.+++.++..+
T Consensus 153 L~Ls~N~i~~~~~----~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~~~~-~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 153 IDFSSNQIFLVCE----HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM---NPFRN-MVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp EEEESSCCCCCCS----GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS---CTTTT-CCBSEEBCSSCCSSTTTTSGG
T ss_pred EECCCCcCCeeCH----HHcccccCCccceEECCCCccccccccchhhcC---Ccccc-CceeEEecCCCcCchhHHHHH
Confidence 9999999988766 333221 16899999999999987554432211 11222 259999999999998888777
Q ss_pred hcC---CCCcEEEccCCccccccccccccccccccCCCCCChhccCC--CCCCEEEccCCcCCCCCchhHhhcCcCCCEE
Q 048351 307 QNM---FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ--KHFSVLDISSAGISDSIPDWFSDTSHKLADL 381 (850)
Q Consensus 307 ~~l---~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 381 (850)
... ++++.+.++.+.+.... ..+.+.+..+..+..+ ++|+.|++++|.+.+..+..+... ++|+.|
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~--------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L 295 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGF--------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVL 295 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSS--------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEE
T ss_pred HhhcCcccccceecccccccccc--------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEE
Confidence 643 57888888755433211 1112222222234443 689999999999988777776554 789999
Q ss_pred ecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCC
Q 048351 382 NFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSN 458 (850)
Q Consensus 382 ~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n 458 (850)
++++|.+++..|..+ ... .+|+.|++++|.+++..+.. +++|++|++++|.+.+..+... ..+++|++|++++|
T Consensus 296 ~L~~n~i~~~~~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 296 NLAYNKINKIADEAF-YGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDN 372 (844)
T ss_dssp EEESCCCCEECTTTT-TTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETC
T ss_pred ECCCCcCCCCChHHh-cCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCC
Confidence 999999998888877 333 78999999999998876654 6678888888888876555432 25678888888888
Q ss_pred CCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC-chhhcCCCCcCeeccccccceeecc
Q 048351 459 LLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL-PSLLKNFTHLRVVALEENSISGNIP 537 (850)
Q Consensus 459 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip 537 (850)
.+++. + .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+
T Consensus 373 ~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 373 ALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 88742 2 2778888888888887 45543 457888888888888532 3345678888888888888875444
Q ss_pred hhHHhcCCCCCEEEccCCccc-----cccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccccccc
Q 048351 538 AWIGESLLNLVVLDLRSNRFY-----GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAV 612 (850)
Q Consensus 538 ~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 612 (850)
......+++|++|++++|.++ +..+..|..+++|+.|+|++|++++..|..|.++++|
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------- 506 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL----------------- 506 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-----------------
T ss_pred ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-----------------
Confidence 333335788888888888886 3445567788888888888888888777777666655
Q ss_pred CCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccC
Q 048351 613 PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ 692 (850)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 692 (850)
+.|+|++|++++..|..+. ++|+.|+|++|++++.+|..| .
T Consensus 507 ----------------------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~ 547 (844)
T 3j0a_A 507 ----------------------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V 547 (844)
T ss_dssp ----------------------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred ----------------------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence 8999999999988777766 899999999999999999876 4
Q ss_pred CCCeeeCCCCcCcccCc
Q 048351 693 SLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 693 ~L~~L~Ls~N~l~~~~p 709 (850)
+|+.|++++|.+.+..+
T Consensus 548 ~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 548 SLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCEEEEEEECCCCSSS
T ss_pred CcCEEEecCCCcccccc
Confidence 79999999999987543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-51 Score=492.46 Aligned_cols=504 Identities=17% Similarity=0.231 Sum_probs=281.1
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCCEEEEEcCCCCCc
Q 048351 32 SIRCIEEERKALLKFKQGLVDEFGFLSSWGSEG--EKKDC--CNW------------RGVRCSNQTGHVKVLDLHGTGRV 95 (850)
Q Consensus 32 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~l~L~~~~~l 95 (850)
..++..+|+.||++||+++.+| +|+..+ ...+| |.| .||+|+. .+||+.++|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence 4456788999999999999876 786311 01355 999 9999986 68999999998
Q ss_pred ccchhhhhccCCCCCCcccccccccCCCCCCEEeC-CCCCCCCCCCCcccCCCC-CCCE--------------EeC-CCC
Q 048351 96 KVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDL-SFNNFSGSQIPMFIGSLS-KLEY--------------LDL-FAA 158 (850)
Q Consensus 96 ~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l~-~L~~--------------L~L-s~n 158 (850)
+++.|.+|++|++|++|++||| ++|.++|. .|....... .+.. ++. ...
T Consensus 333 -------------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 333 -------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp -------------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred -------------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 5899999999999999999999 88988764 332211010 0000 000 000
Q ss_pred CCCC-----------CCCcccCCCCCCcEEEccC--CCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCC
Q 048351 159 SFSG-----------PIPPLLGNLSRLQYLSLGY--NKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL 225 (850)
Q Consensus 159 ~l~~-----------~~p~~l~~l~~L~~L~Ls~--N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 225 (850)
.+++ ..+........++.+.+.. |++.. .+..++++++|++|+|++|++++.. ++....
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N~Lsg~~-i~~~~~----- 470 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDN-IAVDWE----- 470 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGG-BSSSCS-----
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCCcCCCCc-cccccc-----
Confidence 0000 0011111222233332322 33322 3344666666666666666665510 000000
Q ss_pred cEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCC--CCCCCcEEEccCCcCCcccc
Q 048351 226 KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG--PMISLRTLTLSDNELDGEIP 303 (850)
Q Consensus 226 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~--~l~~L~~L~Ls~N~l~~~~p 303 (850)
..+. |.+++. +|+.++ ++++|++|+|++|.+.+.+|
T Consensus 471 ---~~s~-----------------------------n~~~g~----------iP~~l~f~~L~~L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 471 ---DANS-----------------------------DYAKQY----------ENEELSWSNLKDLTDVELYNCPNMTQLP 508 (876)
T ss_dssp ---CTTS-----------------------------HHHHHH----------TTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred ---cccc-----------------------------cccccc----------CChhhhhccCCCCCEEECcCCCCCccCh
Confidence 0000 111111 222333 44444444444444444444
Q ss_pred hhhhcCCCCcEEEccCCc-ccc-ccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCch--hHhhcCcCCC
Q 048351 304 KFFQNMFKLEGLSLRGNS-LEG-VISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD--WFSDTSHKLA 379 (850)
Q Consensus 304 ~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~ 379 (850)
..++++++|+.|+|++|+ +++ .+|..+ ..+ +..+..+++|+.|++++|.++ .+|. .+... ++|+
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L---------~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~ 576 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADW-TRL---------ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM-VKLG 576 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHH---------HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC-TTCC
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHH-Hhh---------hhcccccCCccEEEeeCCcCC-ccCChhhhhcC-CCCC
Confidence 444444444444444444 443 333210 000 001223345555555555555 4444 44332 4566
Q ss_pred EEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCC
Q 048351 380 DLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL 459 (850)
Q Consensus 380 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 459 (850)
.|++++|.++ .+| .+ . .+++|+.|++++|.
T Consensus 577 ~L~Ls~N~l~-~lp-~~-~-----------------------------------------------~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AF-G-----------------------------------------------TNVKLTDLKLDYNQ 606 (876)
T ss_dssp EEECTTSCCC-BCC-CC-C-----------------------------------------------TTSEESEEECCSSC
T ss_pred EEECCCCCcc-cch-hh-c-----------------------------------------------CCCcceEEECcCCc
Confidence 6666666555 344 22 1 11445555555555
Q ss_pred CCCCCCcccccCCC-CCEEEcCCCcccccCCCccccccC--ccEEeccCCccccCCchhh---c--CCCCcCeecccccc
Q 048351 460 LSGKLPDCWLQFNM-LRILNLANNNFSGKIPNSCGYLQK--MLTLSLHHNNFSGELPSLL---K--NFTHLRVVALEENS 531 (850)
Q Consensus 460 l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~l---~--~l~~L~~L~L~~N~ 531 (850)
++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++.+.+|... . .+++|+.|++++|+
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 55 45555555555 555555555555 45555544432 5566666665555443211 1 23356666666666
Q ss_pred ceeecchhHHhcCCCCCEEEccCCccccccCcCcCC--------CCCcceeecccccCcccCCcccc--CcccCcccccc
Q 048351 532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH--------LADIQILDLSLNNISGNIPKCFN--NFTAMTQERSY 601 (850)
Q Consensus 532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~ 601 (850)
++ .+|..++..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|
T Consensus 685 L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L------ 755 (876)
T 4ecn_A 685 IQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL------ 755 (876)
T ss_dssp CC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC------
T ss_pred CC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc------
Confidence 66 566666555666666666666666 44443332 226777777777776 5555443 33333
Q ss_pred CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCC----
Q 048351 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSR---- 677 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~---- 677 (850)
+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus 756 ---------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 756 ---------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp ---------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred ---------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 667777777775 566777777777777755
Q ss_pred --CcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 678 --NNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 678 --N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 778888888888888999999999988 67887766 5888999999988643
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=455.00 Aligned_cols=500 Identities=20% Similarity=0.172 Sum_probs=347.5
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL 202 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 202 (850)
+++++|||++|.+++. .+..+.++++|++|+|++|.+++..|..|+++++|++|++++|++.. ..+..+.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence 4677778877777754 45567777777777777777777666777777777777777776422 233456677777777
Q ss_pred eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCC-CCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCC
Q 048351 203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ-PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA 281 (850)
Q Consensus 203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~ 281 (850)
++++|+++..+. ..++.+++|++|++++|.+++. .| ..+.++ ++|++|++++|++++..+..+
T Consensus 106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp----~~~~~l-~~L~~L~l~~n~l~~~~~~~~--------- 169 (570)
T 2z63_A 106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP----EYFSNL-TNLEHLDLSSNKIQSIYCTDL--------- 169 (570)
T ss_dssp ECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCC----GGGGGC-TTCCEEECTTSCCCEECGGGG---------
T ss_pred cccccccccCCC--ccccccccccEEecCCCccceecCh----hhhccc-CCCCEEeCcCCccceecHHHc---------
Confidence 777777766432 2356666666666666666542 23 334444 666666666666655433322
Q ss_pred CCCCCCC----cEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEE
Q 048351 282 PGPMISL----RTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD 357 (850)
Q Consensus 282 l~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~ 357 (850)
+.+++| +.|++++|.+++..|..+... +|+.|++++|..... .+|..+..++.++.++
T Consensus 170 -~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~----------------~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 170 -RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN----------------VMKTCIQGLAGLEVHR 231 (570)
T ss_dssp -HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT----------------HHHHHHHTTTTCEEEE
T ss_pred -cchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccccc----------------chhhhhcCccccceee
Confidence 223333 566666666665555554443 566666665532211 1122344444444444
Q ss_pred ccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCC-cCcccCCCC---CCCCcEEEccCC
Q 048351 358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSN-HLEGPSPSL---PSNAFYIDLSKN 433 (850)
Q Consensus 358 Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N-~l~~~~~~~---~~~L~~L~Ls~n 433 (850)
+....+... ..+.......+.+.....++.++++++ .+.+..+.. +++++.|++++|
T Consensus 232 l~~~~~~~~-------------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 232 LVLGEFRNE-------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp EEEEECCCC-------------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred eccccccCc-------------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 332221110 000101111111222233445555555 444444433 456677777777
Q ss_pred cCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC-
Q 048351 434 KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL- 512 (850)
Q Consensus 434 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~- 512 (850)
.+++..... . .+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++..
T Consensus 293 ~l~~l~~~~-~-~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 293 TIERVKDFS-Y-NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EECSCCBCC-S-CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE
T ss_pred cchhhhhhh-c-cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc
Confidence 766433222 2 33 8999999999988 5665 4788999999999998876665 67899999999999998654
Q ss_pred -chhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCcccc
Q 048351 513 -PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCFN 590 (850)
Q Consensus 513 -p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 590 (850)
|..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+.
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccccccCccCEEECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 788899999999999999998 4555554 79999999999999988766 5688999999999999999988887777
Q ss_pred CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC-CCChhhhhcccc
Q 048351 591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG-GEVPEEIMDLVG 669 (850)
Q Consensus 591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~ 669 (850)
++++| +.|++++|+++ +.+|..+..+++
T Consensus 443 ~l~~L---------------------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 443 GLSSL---------------------------------------------------EVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp TCTTC---------------------------------------------------CEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCcC---------------------------------------------------cEEECcCCcCccccchhhhhcccC
Confidence 66665 89999999998 678999999999
Q ss_pred CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcC
Q 048351 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQL 738 (850)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 738 (850)
|+.|+|++|++++..|..|+++++|++|++++|++++.+|..|..+++|++|++++|+++|.+|....+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999998999999999999999999999999999999999999999999999999875433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.1e-48 Score=451.31 Aligned_cols=486 Identities=19% Similarity=0.194 Sum_probs=345.0
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI 193 (850)
Q Consensus 114 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 193 (850)
.+|+.+. ++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 94 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWF 94 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHH
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHh
Confidence 3555543 7899999999999975 6788999999999999999999988899999999999999999863 3344558
Q ss_pred ccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhh
Q 048351 194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF 273 (850)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~ 273 (850)
+++++|++|++++|.+++.+ .+..++.+++|++|++++|.+.+..+. ..+..+ ++|++|++++|++++.
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l-~~L~~L~L~~n~l~~~------ 163 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGL-TSLNELEIKALSLRNY------ 163 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTC-CEEEEEEEEETTCCEE------
T ss_pred ccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCccccccCH---hhhhcc-cccCeeeccCCccccc------
Confidence 89999999999999988642 345678888899999988874433321 344555 8888888888888876
Q ss_pred cCCCCCCCCCCCCCCcEEEccCCcCCcccchh-hhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCC
Q 048351 274 NVSSIPDAPGPMISLRTLTLSDNELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKH 352 (850)
Q Consensus 274 ~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~ 352 (850)
.|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++++..... ......+++
T Consensus 164 ----~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------~~~~~~~~~ 224 (549)
T 2z81_A 164 ----QSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSP--------------LPVDEVSSP 224 (549)
T ss_dssp ----CTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCC--------------CSSCCCCCC
T ss_pred ----ChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccc--------------cchhhhhhc
Confidence 44557778888888888888764 4443 456888888888888877642110 001233556
Q ss_pred CCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccC
Q 048351 353 FSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432 (850)
Q Consensus 353 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~ 432 (850)
|+.|++++|.+++..+..+.... ... .+++.+++++|.+.+.........
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~----------------------~~~-~~L~~l~l~~~~~~~~~~~~~~~~------- 274 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLL----------------------RYI-LELSEVEFDDCTLNGLGDFNPSES------- 274 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGG----------------------GGC-TTCCEEEEESCEEECCSCCCCCTT-------
T ss_pred ccceeccccccchhHHHHHHHHh----------------------hhh-ccccccccccccccccccccccch-------
Confidence 66666666665554433332110 001 333444444444333211000000
Q ss_pred CcCcCccccccccCCCCccEEEccCCCCCC-----CCCcccccCCCCCEEEcCCCcccccCCCcc-ccccCccEEeccCC
Q 048351 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSG-----KLPDCWLQFNMLRILNLANNNFSGKIPNSC-GYLQKMLTLSLHHN 506 (850)
Q Consensus 433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N 506 (850)
. ....+++++.|++.++.+.. .++..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 275 -------~--~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 275 -------D--VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp -------T--CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred -------h--hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 0 00022456666666655432 12223344567888888888776 556554 46788888888888
Q ss_pred ccccCCch---hhcCCCCcCeeccccccceeecch--hHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccC
Q 048351 507 NFSGELPS---LLKNFTHLRVVALEENSISGNIPA--WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI 581 (850)
Q Consensus 507 ~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 581 (850)
++++.+|. .+..+++|++|++++|+++ .++. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 88776543 3677888888888888887 4442 23346889999999999998 6788888899999999999998
Q ss_pred cccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh
Q 048351 582 SGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP 661 (850)
Q Consensus 582 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 661 (850)
++ +|..+. +.|++|||++|++++.+
T Consensus 423 ~~-l~~~~~-----------------------------------------------------~~L~~L~Ls~N~l~~~~- 447 (549)
T 2z81_A 423 RV-VKTCIP-----------------------------------------------------QTLEVLDVSNNNLDSFS- 447 (549)
T ss_dssp SC-CCTTSC-----------------------------------------------------TTCSEEECCSSCCSCCC-
T ss_pred cc-ccchhc-----------------------------------------------------CCceEEECCCCChhhhc-
Confidence 73 332211 13489999999999754
Q ss_pred hhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351 662 EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG 735 (850)
Q Consensus 662 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 735 (850)
+.+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 448 ---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp ---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred ---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 57899999999999999 5676 578999999999999999999999999999999999999999988743
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.2e-47 Score=442.59 Aligned_cols=498 Identities=19% Similarity=0.144 Sum_probs=382.0
Q ss_pred CCcccchhhhhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCC
Q 048351 93 GRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLS 172 (850)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 172 (850)
..++.|+++. +.+++..+.+|.++++|++|||++|.+++. .|..++++++|++|+|++|.+++..|..|++++
T Consensus 28 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCS------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccC------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 4567777654 567777777999999999999999999975 567899999999999999999988889999999
Q ss_pred CCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCC
Q 048351 173 RLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSP 252 (850)
Q Consensus 173 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 252 (850)
+|++|++++|++..... ..++++++|++|++++|.+++.. +|..++++++|++|++++|.+++.++ ..+..+ +
T Consensus 101 ~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l-~ 173 (570)
T 2z63_A 101 SLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVL-H 173 (570)
T ss_dssp TCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG----GGGHHH-H
T ss_pred ccccccccccccccCCC-ccccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH----HHccch-h
Confidence 99999999998744332 24899999999999999998742 56789999999999999999988765 444444 6
Q ss_pred cc----cEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc-ccchhhhcCCCCcEEEccCCccccccc
Q 048351 253 SL----ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGVIS 327 (850)
Q Consensus 253 ~L----~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~ 327 (850)
+| +.|++++|.+++.. |..+... +|++|++++|.... .++..+..+++++.+.+....+.....
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~----------~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQ----------PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp TCTTCCCEEECTTCCCCEEC----------TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred ccchhhhhcccCCCCceecC----------HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 66 89999999998753 3334444 89999999986543 567778889998887776443321100
Q ss_pred cccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccC-cCcccCChhhhhhccCCcCE
Q 048351 328 EHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHN-QMTGRFPNYISSMFILESPG 406 (850)
Q Consensus 328 ~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~L~~ 406 (850)
. .. +.. ..+..++++ .++.++++++ .+.+..|..+ ... .+++.
T Consensus 243 l---~~-----~~~---~~~~~l~~l-----------------------~l~~l~l~~~~~~~~~~~~~~-~~l-~~L~~ 286 (570)
T 2z63_A 243 L---EK-----FDK---SALEGLCNL-----------------------TIEEFRLAYLDYYLDDIIDLF-NCL-TNVSS 286 (570)
T ss_dssp C---EE-----CCT---TTTGGGGGS-----------------------EEEEEEEEETTEEESCSTTTT-GGG-TTCSE
T ss_pred h---hh-----cch---hhhcccccc-----------------------chhhhhhhcchhhhhhchhhh-cCc-CcccE
Confidence 0 00 000 001111111 2334444444 3444444444 222 45555
Q ss_pred EEccCCcCcccCCCC--CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcc
Q 048351 407 IDISSNHLEGPSPSL--PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484 (850)
Q Consensus 407 L~l~~N~l~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 484 (850)
|++++|.+++..+.. . +|++|++++|.+.. ++. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+
T Consensus 287 L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~-l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 287 FSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ-FPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp EEEESCEECSCCBCCSCC-CCSEEEEESCBCSS-CCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred EEecCccchhhhhhhccC-CccEEeeccCcccc-cCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence 555555554322111 3 66677777776662 222 1447899999999998876665 7789999999999999
Q ss_pred cccC--CCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC
Q 048351 485 SGKI--PNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP 562 (850)
Q Consensus 485 ~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p 562 (850)
++.. |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|...+..+++|++|++++|.+.+..|
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred CccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 8654 67788899999999999999865444 89999999999999999866664444579999999999999999999
Q ss_pred cCcCCCCCcceeecccccCc-ccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccc
Q 048351 563 FQLCHLADIQILDLSLNNIS-GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN 641 (850)
Q Consensus 563 ~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (850)
..+..+++|++|++++|+++ +.+|..+..+++|
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L---------------------------------------------- 472 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------------------------------------------- 472 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------------------------------------------
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCC----------------------------------------------
Confidence 99999999999999999998 5788777666655
Q ss_pred ccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcc
Q 048351 642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPS 710 (850)
Q Consensus 642 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 710 (850)
+.|+|++|++++..|..++.+++|+.|++++|++++.+|..|.++++|+.|++++|.+++..|.
T Consensus 473 -----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 -----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp -----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred -----CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8999999999999999999999999999999999998888899999999999999999988764
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4e-46 Score=433.53 Aligned_cols=487 Identities=21% Similarity=0.179 Sum_probs=365.2
Q ss_pred CCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeC
Q 048351 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDL 204 (850)
Q Consensus 125 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L 204 (850)
..+.|.+++.++ .+|..+. ++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+.++++|++|++
T Consensus 7 ~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 7 SGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEEC
Confidence 344688899998 5787665 89999999999999888999999999999999999863 334456889999999999
Q ss_pred CCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCC-CccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCC
Q 048351 205 SSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQP-TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283 (850)
Q Consensus 205 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~ 283 (850)
++|++++. .+..++.+++|++|++++|.+++.. + ..+.++ ++|++|++++|++.+.+|+ ..++
T Consensus 82 s~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l-~~L~~L~L~~n~~~~~~~~---------~~~~ 145 (549)
T 2z81_A 82 SDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNL-TNLQTLRIGNVETFSEIRR---------IDFA 145 (549)
T ss_dssp TTSCCCSC--CHHHHTTCTTCCEEECTTCCCSSSCSS----CSCTTC-TTCCEEEEEESSSCCEECT---------TTTT
T ss_pred CCCccCcc--CHHHhccCCCCcEEECCCCcccccchh----hhhhcc-CCccEEECCCCccccccCH---------hhhh
Confidence 99999886 3456889999999999999887642 2 344555 8888888888885554332 3577
Q ss_pred CCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcC
Q 048351 284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI 363 (850)
Q Consensus 284 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l 363 (850)
.+++|++|++++|++++..|..++.+++|++|++++|.+...... .+..+++|+.|++++|.+
T Consensus 146 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----------------~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI-----------------FADILSSVRYLELRDTNL 208 (549)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH-----------------HHHSTTTBSEEEEESCBC
T ss_pred cccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh-----------------hHhhcccccEEEccCCcc
Confidence 788888888888888888888888888888888888876532111 134567777777777777
Q ss_pred CCCC--chhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcccc
Q 048351 364 SDSI--PDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF 441 (850)
Q Consensus 364 ~~~~--~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 441 (850)
++.. +..+....++|+.|++++|.+++..+..+....
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~----------------------------------------- 247 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL----------------------------------------- 247 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG-----------------------------------------
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHh-----------------------------------------
Confidence 6532 222222334566666666655544443331110
Q ss_pred ccccCCCCccEEEccCCCCCCC------CCcccccCCCCCEEEcCCCccccc-----CCCccccccCccEEeccCCcccc
Q 048351 442 LCSFSGQNLVYLDLSSNLLSGK------LPDCWLQFNMLRILNLANNNFSGK-----IPNSCGYLQKMLTLSLHHNNFSG 510 (850)
Q Consensus 442 ~~~~~~~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~ 510 (850)
..+++|+.+++++|.+.+. ....+..+++|+.|++.++.+... ++..+...++|+.|++++|++.
T Consensus 248 ---~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 248 ---RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp ---GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred ---hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 0224566666666655432 123456688999999999877532 1222334578999999999998
Q ss_pred CCchhh-cCCCCcCeeccccccceeecchh---HHhcCCCCCEEEccCCccccccC--cCcCCCCCcceeecccccCccc
Q 048351 511 ELPSLL-KNFTHLRVVALEENSISGNIPAW---IGESLLNLVVLDLRSNRFYGKIP--FQLCHLADIQILDLSLNNISGN 584 (850)
Q Consensus 511 ~~p~~l-~~l~~L~~L~L~~N~l~~~ip~~---~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ 584 (850)
.+|..+ ..+++|++|++++|++++.+|.. +. .+++|++|++++|++++..+ ..+..+++|++|++++|+++ .
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 401 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG-AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P 401 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT-SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-C
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhh-ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-c
Confidence 677665 67999999999999999877643 33 68999999999999986543 45888999999999999998 5
Q ss_pred CCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhh
Q 048351 585 IPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI 664 (850)
Q Consensus 585 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 664 (850)
+|..+..+++| ++|++++|++++ +|..+
T Consensus 402 lp~~~~~~~~L---------------------------------------------------~~L~Ls~N~l~~-l~~~~ 429 (549)
T 2z81_A 402 MPDSCQWPEKM---------------------------------------------------RFLNLSSTGIRV-VKTCI 429 (549)
T ss_dssp CCSCCCCCTTC---------------------------------------------------CEEECTTSCCSC-CCTTS
T ss_pred CChhhcccccc---------------------------------------------------cEEECCCCCccc-ccchh
Confidence 67666555444 899999999984 45443
Q ss_pred hccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCc
Q 048351 665 MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNA 743 (850)
Q Consensus 665 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~ 743 (850)
. ++|++|+|++|++++.+ ..+++|++|||++|+++ .+|. ...+++|++||+++|++++.+|.. ..+..+..
T Consensus 430 ~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 430 P--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp C--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred c--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 2 68999999999999753 57899999999999999 6776 567999999999999999887763 56667777
Q ss_pred cccCCCCCCCCCC
Q 048351 744 SVYDGNPELCGLP 756 (850)
Q Consensus 744 ~~~~gN~~lc~~~ 756 (850)
..+.|||+.|+|+
T Consensus 502 L~l~~N~~~~~~~ 514 (549)
T 2z81_A 502 IWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEecCCCccCCCc
Confidence 7899999999886
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-45 Score=433.94 Aligned_cols=551 Identities=21% Similarity=0.158 Sum_probs=381.3
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL 202 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 202 (850)
+++++|||++|+|+++ .|..|.++++|++|+|++|++++..|.+|+++++|++|+|++|++. ..++..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 4789999999999864 4567899999999999999999877888999999999999999863 3344568899999999
Q ss_pred eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCC
Q 048351 203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP 282 (850)
Q Consensus 203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l 282 (850)
++++|++++++ +..++++++|++|++++|.+++.... ..+..+ ++|++|++++|++++..+..+..+...+
T Consensus 130 ~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~l~--- 200 (635)
T 4g8a_A 130 VAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMP--- 200 (635)
T ss_dssp ECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCC---GGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCT---
T ss_pred ECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCCc---hhhccc-hhhhhhcccCccccccccccccchhhhh---
Confidence 99999998863 24588899999999999988764320 334444 8899999999998887666554433221
Q ss_pred CCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCc
Q 048351 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG 362 (850)
Q Consensus 283 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~ 362 (850)
..+..++++.|.++...+.. .....++.+++.+|.....+... .+..+..++...+..+.
T Consensus 201 ---~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~----------------~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 201 ---LLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKT----------------CIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp ---TCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHH----------------HHHTTTTCEEEEEEEEC
T ss_pred ---hhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccch----------------hhcCCcccccccccccc
Confidence 13457888888888544443 34446677888877655433322 23444555544443222
Q ss_pred CC------CCCchhHhhcCcCCCEEecccCcCcc---cCChhhhhhccCCcCEEEccCCcCcccCCC-CCCCCcEEEccC
Q 048351 363 IS------DSIPDWFSDTSHKLADLNFSHNQMTG---RFPNYISSMFILESPGIDISSNHLEGPSPS-LPSNAFYIDLSK 432 (850)
Q Consensus 363 l~------~~~~~~~~~~~~~L~~L~Ls~N~l~~---~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~L~~L~Ls~ 432 (850)
.. ......+.. ...+....+..+.... ..+..+ ... ..+..+++..+.+.+..+. ....++.|++.+
T Consensus 261 ~~~~~~l~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~~~~-~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDGIIDLF-NCL-TNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 337 (635)
T ss_dssp CTTSCCCSCCCTTTTGG-GGGSEEEEEEEECCCSCEEECTTTT-GGG-TTCSEEEEESCEEEECGGGGSCCCCSEEEEES
T ss_pred ccccccccccccccccc-ccchhhhhhhhhhhcccccchhhhh-hhh-cccccccccccccccccccccchhhhhhhccc
Confidence 11 111111211 1234444443332221 112222 111 5666677777666554332 245677777777
Q ss_pred CcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccc--cCCCccccccCccEEeccCCcccc
Q 048351 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG--KIPNSCGYLQKMLTLSLHHNNFSG 510 (850)
Q Consensus 433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~ 510 (850)
|.+.+.... .+..|+.+++..|.+.... ....+++|+.|++++|.+.. ..+..+..+.+|+.++++.|....
T Consensus 338 ~~~~~~~~~----~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 411 (635)
T 4g8a_A 338 CKFGQFPTL----KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT 411 (635)
T ss_dssp CEESSCCCC----BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE
T ss_pred ccccCcCcc----cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc
Confidence 776654332 2367888888888766433 34567888888888887753 345556667788888888888763
Q ss_pred CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc-ccCCccc
Q 048351 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS-GNIPKCF 589 (850)
Q Consensus 511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~ 589 (850)
.+..+..+++|+.+++..|......+...+..+++++.++++.|.+.+..+..+..++.|+.|++++|++. +..|..|
T Consensus 412 -~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 412 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp -ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred -ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh
Confidence 45567778888888888888776666666667888888888888888888888888888888888888754 3456666
Q ss_pred cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcccc
Q 048351 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG 669 (850)
Q Consensus 590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 669 (850)
..+++| ++|||++|++++.+|..|+++++
T Consensus 491 ~~l~~L---------------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 491 TELRNL---------------------------------------------------TFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTCTTC---------------------------------------------------CEEECTTSCCCEECTTTTTTCTT
T ss_pred hhcccc---------------------------------------------------CEEECCCCccCCcChHHHcCCCC
Confidence 555544 88999999999888999999999
Q ss_pred CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCC-CCCCEEEcCCCcCcccCCCCCcCCCcCccccCC
Q 048351 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV-NRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDG 748 (850)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 748 (850)
|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..|..+ ++|++|++++|++++.. .+..|..+ +..
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C----~~~~~~~w-l~~ 594 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC----EHQSFLQW-IKD 594 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG----GGHHHHHH-HHH
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC----CcHHHHHH-HHh
Confidence 9999999999998888889999999999999999999999999888 68999999999998753 33333221 111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 048351 749 NPELCGLPLPSKCWDEESAPGP 770 (850)
Q Consensus 749 N~~lc~~~~~~~c~~~~~~~~~ 770 (850)
+...-.......|..|+...+.
T Consensus 595 ~~~~~~~~~~~~C~~P~~~~g~ 616 (635)
T 4g8a_A 595 QRQLLVEVERMECATPSDKQGM 616 (635)
T ss_dssp TTTTBSCGGGCBBCSSTTTTTC
T ss_pred CCCccCCCCCceeCCchHHCCC
Confidence 1111111223468777776665
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=432.15 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=124.2
Q ss_pred CCCccEEEccCCCCCCCCC-cccccC---CCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCc
Q 048351 447 GQNLVYLDLSSNLLSGKLP-DCWLQF---NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 522 (850)
+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+..+++|
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence 35677777777776 344 334333 55777777777665321 12456666666666666666566666666666
Q ss_pred Ceecccccccee--ecchhHHhcCCCCCEEEccCCccccccCcC-cCCCCCcceeecccccCcccCCccccCcccCcccc
Q 048351 523 RVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPFQ-LCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER 599 (850)
Q Consensus 523 ~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 599 (850)
++|++++|++++ .+|..+. .+++|++|++++|.+++.+|.. +..+++|
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L---------------------------- 401 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSL---------------------------- 401 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTC----------------------------
T ss_pred CEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccC----------------------------
Confidence 666666666653 2333333 3455555555555544423321 3333333
Q ss_pred ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCc
Q 048351 600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN 679 (850)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 679 (850)
+.|++++|++++.+|..+. ++|+.|+|++|+
T Consensus 402 -----------------------------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 402 -----------------------------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp -----------------------------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred -----------------------------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 5566666666555555443 567778888887
Q ss_pred CccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351 680 LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 680 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 77 567777788888888888888884333347888888888888888887654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-46 Score=441.72 Aligned_cols=461 Identities=19% Similarity=0.226 Sum_probs=356.9
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCC------C------CCCcccCCCCCCcEEEccCCCCCCCCCc
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFS------G------PIPPLLGNLSRLQYLSLGYNKLLRAGNL 190 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 190 (850)
.+++.|+|++|.++|. +|..++++++|++|+|++|.+. | .+|...
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---------------------- 137 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---------------------- 137 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH----------------------
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHH----------------------
Confidence 4678899999999885 8888899999999999988762 2 222222
Q ss_pred cccccCCCccEEeCCCCCCCCCcchhhhhcC-CCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEc--cCCCCCCc
Q 048351 191 DWISQLFSLRYLDLSSCNLSKSTDWLQEVDK-IPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGL--SYNNLTAS 267 (850)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L--s~N~l~~~ 267 (850)
+..|+ +++++|.+.+. .+..+.. +..+..+++....+..... ..++.+.+ ..|++++
T Consensus 138 -----~~~l~-l~l~~~~l~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------~~l~~l~l~~~~n~l~~- 197 (636)
T 4eco_A 138 -----KQKMR-MHYQKTFVDYD--PREDFSDLIKDCINSDPQQKSIKKSSR-----------ITLKDTQIGQLSNNITF- 197 (636)
T ss_dssp -----HHHHH-THHHHHHTCCC--GGGGSCHHHHHHHHHCTTSCCCCCCCC-----------CCCCTTTTTCCSCEEEE-
T ss_pred -----HHHHH-hhHHHhhhccC--chhhHHHHHHHHhhcCccccccccccc-----------cchhhhhhccccCCCcc-
Confidence 23333 44444444332 1222221 1112222222211111100 22222223 3567776
Q ss_pred cchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcc-----------------cchhhh--cCCCCcEEEccCCcccccccc
Q 048351 268 IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE-----------------IPKFFQ--NMFKLEGLSLRGNSLEGVISE 328 (850)
Q Consensus 268 ~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L~~N~l~~~~~~ 328 (850)
+|. .++++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|.
T Consensus 198 ip~----------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 198 VSK----------AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp ECG----------GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred CCH----------HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence 444 467788999999999999986 999988 999999999999998876554
Q ss_pred ccccccccccCCCCCChhccCCCCCCEEEccCCc-CCC-CCchhHhhc-----CcCCCEEecccCcCcccCCh--hhhhh
Q 048351 329 HFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG-ISD-SIPDWFSDT-----SHKLADLNFSHNQMTGRFPN--YISSM 399 (850)
Q Consensus 329 ~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~-----~~~L~~L~Ls~N~l~~~~p~--~~~~~ 399 (850)
.+.++++|++|++++|+ +++ .+|..+... +++|++|++++|+++ .+|. .+ .
T Consensus 268 -----------------~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~- 327 (636)
T 4eco_A 268 -----------------FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-Q- 327 (636)
T ss_dssp -----------------TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-T-
T ss_pred -----------------HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-c-
Confidence 48999999999999998 998 899888764 368999999999999 6776 55 1
Q ss_pred ccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEc
Q 048351 400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL 479 (850)
Q Consensus 400 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 479 (850)
.+++|++|++++|.++|.+| .+..+++|++|++
T Consensus 328 ----------------------------------------------~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 328 ----------------------------------------------KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp ----------------------------------------------TCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred ----------------------------------------------cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 22689999999999998899 8999999999999
Q ss_pred CCCcccccCCCccccccC-ccEEeccCCccccCCchhhcCCC--CcCeeccccccceeecchhHHh------cCCCCCEE
Q 048351 480 ANNNFSGKIPNSCGYLQK-MLTLSLHHNNFSGELPSLLKNFT--HLRVVALEENSISGNIPAWIGE------SLLNLVVL 550 (850)
Q Consensus 480 s~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~ip~~~~~------~l~~L~~L 550 (850)
++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++|++++.+|..+.. .+++|++|
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 999999 88999999999 999999999999 7888887765 8999999999999888876541 36799999
Q ss_pred EccCCccccccCcCcCCCCCcceeecccccCcccCCccccC-cccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN-FTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629 (850)
Q Consensus 551 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (850)
++++|.+++..+..+..+++|++|++++|+++ .+|..... ...
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~----------------------------------- 482 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE----------------------------------- 482 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-----------------------------------
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-----------------------------------
Confidence 99999999544444567999999999999999 66654321 110
Q ss_pred EEecCcccccccccccccEEEcCCCCCCCCChhhhh--ccccCCeEecCCCcCccCCCccccccCCCCeeeC------CC
Q 048351 630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM--DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL------SR 701 (850)
Q Consensus 630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~ 701 (850)
....++.|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++
T Consensus 483 ---------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 483 ---------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp ---------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred ---------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 0123446699999999999 7888887 99999999999999998 8999999999999999 56
Q ss_pred CcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCC
Q 048351 702 NQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCG 754 (850)
Q Consensus 702 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~ 754 (850)
|++.+.+|..+..+++|++|++++|++ +.||... ...+....+.+|+..|-
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 889999999999999999999999999 7899763 36677777999998873
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=418.28 Aligned_cols=455 Identities=20% Similarity=0.191 Sum_probs=334.2
Q ss_pred CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351 109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG 188 (850)
Q Consensus 109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 188 (850)
+.++ .+|..+. ++|++|+|++|.+++. .|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|++..
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 83 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-- 83 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--
T ss_pred CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--
Confidence 4555 4676665 8999999999999875 56788899999999999999998888899999999999999998642
Q ss_pred CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcc--cEEEccCCCC--
Q 048351 189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL--ETLGLSYNNL-- 264 (850)
Q Consensus 189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L--~~L~Ls~N~l-- 264 (850)
.+.. .+++|++|++++|.+++.+ +|..++.+++|++|++++|.+++. .+..+ ++| ++|++++|++
T Consensus 84 -lp~~-~l~~L~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l-~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 84 -ISCH-PTVNLKHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPI-AHLNISKVLLVLGETYG 152 (520)
T ss_dssp -EECC-CCCCCSEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEESSCCGG-------GGGGG-TTSCEEEEEEEECTTTT
T ss_pred -cCcc-ccCCccEEeccCCcccccc-chhhhccCCcceEEEecCcccchh-------hcccc-ccceeeEEEeecccccc
Confidence 2222 7889999999999988742 457888899999999999988752 23333 666 9999999988
Q ss_pred CCccchhhhcCCCCCCCCCCCC-CCcEEEccCCcCCcccch-hhhcCCCCcEEEccCCc-------cccccccccccccc
Q 048351 265 TASIYPWLFNVSSIPDAPGPMI-SLRTLTLSDNELDGEIPK-FFQNMFKLEGLSLRGNS-------LEGVISEHFFSNFS 335 (850)
Q Consensus 265 ~~~~~~~l~~l~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~~l~ 335 (850)
.+..| ..+..+. ....+++++|.+.+.++. .+.++++|+.|++++|. +.+.++
T Consensus 153 ~~~~~----------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------- 214 (520)
T 2z7x_B 153 EKEDP----------EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-------- 214 (520)
T ss_dssp SSCCT----------TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--------
T ss_pred ccccc----------ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--------
Confidence 55533 3344443 344678888888775554 56778888888888886 554443
Q ss_pred cccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhh--cCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351 336 YLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD--TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH 413 (850)
Q Consensus 336 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~ 413 (850)
.+..+++|+.|++++|.+++..+..+.. ..++|++|++++|+++|.+|..+....
T Consensus 215 ----------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~------------- 271 (520)
T 2z7x_B 215 ----------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS------------- 271 (520)
T ss_dssp ----------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC-------------
T ss_pred ----------hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc-------------
Confidence 2677788888888887776543332221 123677777777777766665430000
Q ss_pred CcccCCCCCCCCcEEEccCCcCcCcccc--ccc-cCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCC
Q 048351 414 LEGPSPSLPSNAFYIDLSKNKFSGPISF--LCS-FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490 (850)
Q Consensus 414 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 490 (850)
...++.|+.+++++|.+ .+|. ... ....+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|.
T Consensus 272 -----~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 272 -----GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp -----SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred -----cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh
Confidence 02245566777777776 2221 110 01157999999999987432 236889999999999999998999
Q ss_pred ccccccCccEEeccCCcccc--CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCC
Q 048351 491 SCGYLQKMLTLSLHHNNFSG--ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL 568 (850)
Q Consensus 491 ~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 568 (850)
.++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|...+..+++|++|++++|++++.+|..+.
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-- 420 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-- 420 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence 99999999999999999996 56788999999999999999999769987555789999999999999876655432
Q ss_pred CCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccE
Q 048351 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKS 648 (850)
Q Consensus 569 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 648 (850)
++| +.
T Consensus 421 ~~L---------------------------------------------------------------------------~~ 425 (520)
T 2z7x_B 421 PRI---------------------------------------------------------------------------KV 425 (520)
T ss_dssp TTC---------------------------------------------------------------------------CE
T ss_pred ccC---------------------------------------------------------------------------CE
Confidence 333 45
Q ss_pred EEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc-cccccCCCCeeeCCCCcCcccCc
Q 048351 649 VDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP-KIGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 649 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
|+|++|+++ .+|..+..+++|+.|+|++|++++ +|. .+..+++|++|++++|++++..+
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 556666665 556666677778888888888874 444 37778888888888888876544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-43 Score=419.54 Aligned_cols=527 Identities=17% Similarity=0.128 Sum_probs=400.8
Q ss_pred eCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCC
Q 048351 129 DLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCN 208 (850)
Q Consensus 129 ~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~ 208 (850)
+-++-+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|+|++|++. ..++.+|.++++|++|+|++|+
T Consensus 37 ~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 37 QCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp ECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred ECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCc
Confidence 44555566 4777653 58999999999999888889999999999999999863 3344568999999999999999
Q ss_pred CCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCC
Q 048351 209 LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISL 288 (850)
Q Consensus 209 l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L 288 (850)
|++.+ +..|.++++|++|+|++|++++.++ ..+.++ ++|++|++++|++++.. +|..++.+++|
T Consensus 112 l~~l~--~~~f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L-~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L 175 (635)
T 4g8a_A 112 IQSLA--LGAFSGLSSLQKLVAVETNLASLEN----FPIGHL-KTLKELNVAHNLIQSFK---------LPEYFSNLTNL 175 (635)
T ss_dssp CCEEC--GGGGTTCTTCCEEECTTSCCCCSTT----CCCTTC-TTCCEEECCSSCCCCCC---------CCGGGGGCTTC
T ss_pred CCCCC--HHHhcCCCCCCEEECCCCcCCCCCh----hhhhcC-cccCeeccccCccccCC---------Cchhhccchhh
Confidence 99863 3678999999999999999998876 456666 99999999999997631 34557788999
Q ss_pred cEEEccCCcCCcccchhhhcCCCCc----EEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351 289 RTLTLSDNELDGEIPKFFQNMFKLE----GLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364 (850)
Q Consensus 289 ~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (850)
++|++++|++++..|..+..+.+++ .++++.|.+....+. ......++.+++.+|...
T Consensus 176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~------------------~~~~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG------------------AFKEIRLHKLTLRNNFDS 237 (635)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT------------------TTTTCEEEEEEEESCCSS
T ss_pred hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc------------------cccchhhhhhhhhccccc
Confidence 9999999999988888887766544 688899988765443 233445677888888766
Q ss_pred CCCchhHhhcCcCCCEEecccCcCc------ccCChhhhhhccCCcCEEEccCCcCc----ccCC--CCCCCCcEEEccC
Q 048351 365 DSIPDWFSDTSHKLADLNFSHNQMT------GRFPNYISSMFILESPGIDISSNHLE----GPSP--SLPSNAFYIDLSK 432 (850)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~Ls~N~l~------~~~p~~~~~~~~~~L~~L~l~~N~l~----~~~~--~~~~~L~~L~Ls~ 432 (850)
..++......+..++...+..+... ......+... ..+...++..+... +... ....++..+++.+
T Consensus 238 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 238 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL--CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG--GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccchhhcCCcccccccccccccccccccccccccccccc--cchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 5444443333456666555433222 1222222122 23333343333222 1111 1256788888888
Q ss_pred CcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccc--c
Q 048351 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS--G 510 (850)
Q Consensus 433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~ 510 (850)
+.+....+.. ....++.|++.+|.+.+..+. .+..|+.+++.+|.+.... ....+++|+.|++++|.+. +
T Consensus 316 ~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 316 VTIERVKDFS---YNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp CEEEECGGGG---SCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccccccc---cchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhcccccccc
Confidence 8776654432 236789999999988755443 4677889999988876432 3457889999999999886 3
Q ss_pred CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCccc
Q 048351 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCF 589 (850)
Q Consensus 511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 589 (850)
..+..+..+.+|+.+++..|.+. .++..+. .+++|+.+++++|......+ ..+..+++++.+++++|.+.+..|..+
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 45667778889999999999887 4555554 68899999999888776554 457788999999999999988777776
Q ss_pred cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCC-CCCChhhhhccc
Q 048351 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKL-GGEVPEEIMDLV 668 (850)
Q Consensus 590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~ 668 (850)
..++.+ +.|+|++|++ .+.+|..|..++
T Consensus 466 ~~~~~L---------------------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 466 NGLSSL---------------------------------------------------EVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp TTCTTC---------------------------------------------------CEEECTTCEEGGGEECSCCTTCT
T ss_pred ccchhh---------------------------------------------------hhhhhhhcccccccCchhhhhcc
Confidence 665554 8899999975 456788999999
Q ss_pred cCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCC-cC-CCcCcccc
Q 048351 669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT-QL-QSFNASVY 746 (850)
Q Consensus 669 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~-~~~~~~~~ 746 (850)
+|++|+|++|++++.+|..|+++++|++|+|++|+|++.+|..|..+++|++||+++|++++.+|... .+ .++....+
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999888653 22 45666779
Q ss_pred CCCCCCCCCCC
Q 048351 747 DGNPELCGLPL 757 (850)
Q Consensus 747 ~gN~~lc~~~~ 757 (850)
.|||+.|+|.+
T Consensus 575 ~~Np~~C~C~~ 585 (635)
T 4g8a_A 575 TQNDFACTCEH 585 (635)
T ss_dssp TTCCBCCSGGG
T ss_pred eCCCCcccCCc
Confidence 99999999874
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.8e-44 Score=424.40 Aligned_cols=475 Identities=17% Similarity=0.168 Sum_probs=346.7
Q ss_pred CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEc-cCCCCCCCCCccccccccCCCCcc--cEEE----------ccCCC
Q 048351 197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL-EQCDLQLQPTIHRSFSHLNSSPSL--ETLG----------LSYNN 263 (850)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~L--~~L~----------Ls~N~ 263 (850)
..++.|+|++|.+++. +|..++++++|++|+| ++|.+.|..+.........+ +.. +.+. .....
T Consensus 323 ~~V~~L~Ls~~~L~G~--ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l-~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR--VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM-SEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp SCEEEEECTTTCCEEE--ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSC-CHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEECccCCCCCc--CchHHhccccceEeeeccccccccccccccccccccc-chhHHHHHHHhhhhhhhccCcchh
Confidence 3567777777777664 5667777777777777 66666655331100000000 000 0000 00011
Q ss_pred CCCccchhhhcCCC-CCCCCCCCCCCcEEEccC--CcCCcccchhhhcCCCCcEEEccCCccccc-cccccccccccccC
Q 048351 264 LTASIYPWLFNVSS-IPDAPGPMISLRTLTLSD--NELDGEIPKFFQNMFKLEGLSLRGNSLEGV-ISEHFFSNFSYLKM 339 (850)
Q Consensus 264 l~~~~~~~l~~l~~-ip~~l~~l~~L~~L~Ls~--N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~l~~~~l 339 (850)
+.+.++..+..... .+........++.+.+.. |++++ +|..++++++|++|+|++|.+++. ++... ...+.+.+
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~-~~~s~n~~ 477 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW-EDANSDYA 477 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC-SCTTSHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc-cccccccc
Confidence 11111111111000 111122333455555554 88888 899999999999999999999882 22211 11122333
Q ss_pred CCCCChhcc--CCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCc-Ccc-cCChhhhhh-----ccCCcCEEEcc
Q 048351 340 GPHFPKWLQ--TQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQ-MTG-RFPNYISSM-----FILESPGIDIS 410 (850)
Q Consensus 340 ~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~-~~p~~~~~~-----~~~~L~~L~l~ 410 (850)
.|.+|..++ ++++|+.|++++|.+.+.+|..+... ++|+.|++++|+ +++ .+|..+... ..++|+.|+++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 345677777 99999999999999999999888765 699999999998 998 888776322 11489999999
Q ss_pred CCcCcccCCC--CCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccC
Q 048351 411 SNHLEGPSPS--LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI 488 (850)
Q Consensus 411 ~N~l~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 488 (850)
+|.++ .+|. .+. .+++|++|++++|.++ .+| .|..+++|+.|++++|.++ .+
T Consensus 557 ~N~L~-~ip~~~~l~----------------------~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l 610 (876)
T 4ecn_A 557 YNNLE-EFPASASLQ----------------------KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI 610 (876)
T ss_dssp SSCCC-BCCCHHHHT----------------------TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC
T ss_pred CCcCC-ccCChhhhh----------------------cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc
Confidence 99988 4443 222 3478999999999999 888 8999999999999999999 89
Q ss_pred CCccccccC-ccEEeccCCccccCCchhhcCCCC--cCeeccccccceeecchhH---H-hcCCCCCEEEccCCcccccc
Q 048351 489 PNSCGYLQK-MLTLSLHHNNFSGELPSLLKNFTH--LRVVALEENSISGNIPAWI---G-ESLLNLVVLDLRSNRFYGKI 561 (850)
Q Consensus 489 p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~ip~~~---~-~~l~~L~~L~L~~N~l~~~~ 561 (850)
|..+..+++ |+.|++++|+++ .+|..+..++. |+.|++++|++++.+|... . ..+++|++|++++|.++ .+
T Consensus 611 p~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~l 688 (876)
T 4ecn_A 611 PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KF 688 (876)
T ss_dssp CTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SC
T ss_pred hHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-cc
Confidence 999999999 999999999999 78888877755 9999999999987766322 1 02458999999999999 56
Q ss_pred CcCc-CCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccc
Q 048351 562 PFQL-CHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYK 640 (850)
Q Consensus 562 p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (850)
|..+ ..+++|+.|+|++|+++ .+|..+..... ...
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-------------------------------------------~~l 724 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMT-SIPENSLKPKD-------------------------------------------GNY 724 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-------------------------------------------SCC
T ss_pred CHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-------------------------------------------ccc
Confidence 6554 48899999999999998 66654432110 001
Q ss_pred cccccccEEEcCCCCCCCCChhhhh--ccccCCeEecCCCcCccCCCccccccCCCCeeeCCC------CcCcccCcccc
Q 048351 641 NTLGLVKSVDLSSNKLGGEVPEEIM--DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSR------NQFSGGIPSSL 712 (850)
Q Consensus 641 ~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~~p~~l 712 (850)
..++.|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|..+
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 23446699999999999 7888887 99999999999999998 799999999999999977 88999999999
Q ss_pred cCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCC
Q 048351 713 SQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELC 753 (850)
Q Consensus 713 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc 753 (850)
..+++|++|++++|++ +.||... ...+....+.+|+...
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred hcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 9999999999999999 8999863 3566667788887654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=405.00 Aligned_cols=460 Identities=20% Similarity=0.215 Sum_probs=253.9
Q ss_pred CCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeC
Q 048351 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDL 204 (850)
Q Consensus 125 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L 204 (850)
.+++|+++|.++ .+|..+. ++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+.++++|++|++
T Consensus 33 ~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEEC
Confidence 367777777777 3565543 67777777777777666667777777777777777652 223345666777777777
Q ss_pred CCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCC-CccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCC
Q 048351 205 SSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQP-TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283 (850)
Q Consensus 205 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~ 283 (850)
++|+++.+ +.. .+++|++|++++|.+++.+ | ..+.++ ++|++|++++|++++. .+.
T Consensus 108 s~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p----~~~~~l-~~L~~L~L~~n~l~~~-------------~~~ 164 (562)
T 3a79_B 108 SHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVC----KEFGNL-TKLTFLGLSAAKFRQL-------------DLL 164 (562)
T ss_dssp TTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCC----GGGGGC-TTCCEEEEECSBCCTT-------------TTG
T ss_pred CCCcCCcc---Ccc--ccccCCEEECCCCCccccCch----Hhhccc-CcccEEecCCCccccC-------------chh
Confidence 77776653 222 5666666666666666532 2 234444 6666666666666542 122
Q ss_pred CCCCC--cEEEccCCcC--CcccchhhhcCC-CCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEc
Q 048351 284 PMISL--RTLTLSDNEL--DGEIPKFFQNMF-KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI 358 (850)
Q Consensus 284 ~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~L 358 (850)
.+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++.. .+..+++|+.+++
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~----------------~~~~l~~L~~L~l 228 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM----------------SVNALGHLQLSNI 228 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE----------------EESSEEEEEEEEE
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh----------------cccccceEEEecc
Confidence 33333 6666666666 555555555443 1113455555555433321 1344555555666
Q ss_pred cCCcCCC----CCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCc
Q 048351 359 SSAGISD----SIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNK 434 (850)
Q Consensus 359 s~n~l~~----~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~ 434 (850)
++|...- .....+.. .++++.++++++.+.+.....+
T Consensus 229 ~~n~~~~~~l~~~~~~l~~-l~~L~~L~L~~~~l~~~~~~~~-------------------------------------- 269 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTR-GPTLLNVTLQHIETTWKCSVKL-------------------------------------- 269 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHS-CSSCEEEEEEEEEECHHHHHHH--------------------------------------
T ss_pred cccccccchHHHHHHHHhc-cCcceEEEecCCcCcHHHHHHH--------------------------------------
Confidence 5553110 00111111 2345555555444432211110
Q ss_pred CcCccccccccCCCCccEEEccCCCCCCCCCccc-----ccCCCCCEEEcCCCcccccCCC-cccc---ccCccEEeccC
Q 048351 435 FSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCW-----LQFNMLRILNLANNNFSGKIPN-SCGY---LQKMLTLSLHH 505 (850)
Q Consensus 435 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p~-~~~~---l~~L~~L~Ls~ 505 (850)
.+.. ..++|++|++++|.++|.+|..+ .+++.|+.++++.|.+ .+|. .+.. ..+|++|++++
T Consensus 270 ----~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 270 ----FQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ----HHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred ----HHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 0000 01234444444444444444333 3333333333333333 1221 1111 13345555555
Q ss_pred CccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccc--ccCcCcCCCCCcceeecccccCcc
Q 048351 506 NNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG--KIPFQLCHLADIQILDLSLNNISG 583 (850)
Q Consensus 506 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~ 583 (850)
|.+.... ....+++|++|++++|++++.+|..+. .+++|++|++++|++++ .+|..+..+++|++|++++|++++
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 5443211 013445555555555555544444443 45555555555555554 223456666667777777777665
Q ss_pred cCCcc-ccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChh
Q 048351 584 NIPKC-FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPE 662 (850)
Q Consensus 584 ~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 662 (850)
.+|.. +..+++ |+.|+|++|++++.+|.
T Consensus 418 ~~~~~~~~~l~~---------------------------------------------------L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 418 HAYDRTCAWAES---------------------------------------------------ILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp CCSSCCCCCCTT---------------------------------------------------CCEEECCSSCCCGGGGS
T ss_pred ccChhhhcCccc---------------------------------------------------CCEEECCCCCCCcchhh
Confidence 44432 333332 36777777777766665
Q ss_pred hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccc-ccCCCCCCEEEcCCCcCcccCCC
Q 048351 663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS-LSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 663 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
.+. ++|+.|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|+++|.+|.
T Consensus 447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 544 67888888888888 577777788899999999999984 4544 88899999999999999887664
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=395.24 Aligned_cols=458 Identities=18% Similarity=0.173 Sum_probs=321.9
Q ss_pred CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351 109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG 188 (850)
Q Consensus 109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 188 (850)
+++++ +|..+. ++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++....
T Consensus 41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 41 RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence 35664 666554 8999999999999975 6678999999999999999999988999999999999999999975322
Q ss_pred CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcc--cEEEccCCCC--
Q 048351 189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL--ETLGLSYNNL-- 264 (850)
Q Consensus 189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L--~~L~Ls~N~l-- 264 (850)
. . .+++|++|++++|++++.+ .+..++++++|++|++++|.+++.. +..+ ++| ++|++++|++
T Consensus 117 --~-~-~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l-~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 117 --C-C-PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPV-AHLHLSCILLDLVSYHI 183 (562)
T ss_dssp --S-C-CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTTT-------TGGG-TTSCEEEEEEEESSCCC
T ss_pred --c-c-ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccCc-------hhhh-hhceeeEEEeecccccc
Confidence 2 2 8999999999999998853 3578999999999999999998632 2222 455 9999999999
Q ss_pred CCccchhhhcCCCCCCCCCCCC-CCcEEEccCCcCCcccch-hhhcCCCCcEEEccCCccccccccccccccccccCCCC
Q 048351 265 TASIYPWLFNVSSIPDAPGPMI-SLRTLTLSDNELDGEIPK-FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPH 342 (850)
Q Consensus 265 ~~~~~~~l~~l~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~ 342 (850)
++..|..+ ..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+.....-. .
T Consensus 184 ~~~~~~~l----------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~-------------~ 240 (562)
T 3a79_B 184 KGGETESL----------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM-------------T 240 (562)
T ss_dssp CSSSCCEE----------EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH-------------H
T ss_pred cccCcccc----------cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH-------------H
Confidence 77655443 3322 122668899998876654 456789999999999862110000 0
Q ss_pred CChhccCCCCCCEEEccCCcCCCCCchhHhh--cCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCC
Q 048351 343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSD--TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPS 420 (850)
Q Consensus 343 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~ 420 (850)
.+..+..+++|+.++++++.+.+.....+.. ..++|++|++++|.++|.+|..+....
T Consensus 241 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~-------------------- 300 (562)
T 3a79_B 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS-------------------- 300 (562)
T ss_dssp HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC--------------------
T ss_pred HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc--------------------
Confidence 1123677889999998888776532221111 112567777777776666654430000
Q ss_pred CCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCC-ccccc---CCCCCEEEcCCCcccccCCCcccccc
Q 048351 421 LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP-DCWLQ---FNMLRILNLANNNFSGKIPNSCGYLQ 496 (850)
Q Consensus 421 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~ 496 (850)
.. .++.|+.++++.+.+ .+| ..+.. ..+|+.|++++|.+.... ....++
T Consensus 301 -~~----------------------~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~ 353 (562)
T 3a79_B 301 -ET----------------------ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS 353 (562)
T ss_dssp -SC----------------------SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred -cc----------------------cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence 01 123444444444444 233 12211 245666666666654221 114566
Q ss_pred CccEEeccCCccccCCchhhcCCCCcCeecccccccee--ecchhHHhcCCCCCEEEccCCccccccCc-CcCCCCCcce
Q 048351 497 KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPF-QLCHLADIQI 573 (850)
Q Consensus 497 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~ 573 (850)
+|++|++++|++++.+|..+.++++|++|++++|++++ .+|..+. .+++|++|++++|.+++.+|. .+..+++|++
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 77777777777776667777777777777777777763 2233343 577888888888888774544 4777888888
Q ss_pred eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351 574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653 (850)
Q Consensus 574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 653 (850)
|++++|++++.+|..+. + .|+.|+|++
T Consensus 433 L~l~~n~l~~~~~~~l~--~---------------------------------------------------~L~~L~L~~ 459 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--P---------------------------------------------------KVKVLDLHN 459 (562)
T ss_dssp EECCSSCCCGGGGSSCC--T---------------------------------------------------TCSEEECCS
T ss_pred EECCCCCCCcchhhhhc--C---------------------------------------------------cCCEEECCC
Confidence 88888888876655432 2 238899999
Q ss_pred CCCCCCChhhhhccccCCeEecCCCcCccCCCcc-ccccCCCCeeeCCCCcCcccCc
Q 048351 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK-IGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|.+.+..|
T Consensus 460 N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 460 NRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9998 677777799999999999999995 5555 9999999999999999997665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.4e-42 Score=383.77 Aligned_cols=408 Identities=23% Similarity=0.269 Sum_probs=212.9
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccC
Q 048351 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQL 196 (850)
Q Consensus 117 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 196 (850)
|.-.+.++|++|++++|.+ | .+|..++++++|++|++++|.+.|.+|.+++++++|+.+++..|. .
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------D 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------H
T ss_pred ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------c
Confidence 3444678999999999999 5 599999999999999999999999999999999999888887764 1
Q ss_pred CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCC
Q 048351 197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVS 276 (850)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~ 276 (850)
.++++|++++|.+++++.+ .++|++|++++|.+++.+. . .++|++|++++|++++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~-----~----~~~L~~L~l~~n~l~~---------- 125 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-----L----PQSLKSLLVDNNNLKA---------- 125 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC-----C----CTTCCEEECCSSCCSC----------
T ss_pred cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCcccc-----c----cCCCcEEECCCCccCc----------
Confidence 5688899999988886432 3678888888888877432 1 1678888888888775
Q ss_pred CCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEE
Q 048351 277 SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL 356 (850)
Q Consensus 277 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L 356 (850)
+|.. .++|++|++++|++++ +| .++++++|++|++++|++++. |. . ..+|++|
T Consensus 126 -l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~-----------------~---~~~L~~L 178 (454)
T 1jl5_A 126 -LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD-----------------L---PPSLEFI 178 (454)
T ss_dssp -CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC-----------------C---CTTCCEE
T ss_pred -ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC-----------------C---cccccEE
Confidence 2211 1578888888888875 56 477788888888888877642 21 0 1245555
Q ss_pred EccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCc
Q 048351 357 DISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFS 436 (850)
Q Consensus 357 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~ 436 (850)
++++|.+++ +| .+.. + ++++.|++++|++++ +|..+
T Consensus 179 ~L~~n~l~~-l~-~~~~-l--------------------------~~L~~L~l~~N~l~~-l~~~~-------------- 214 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQN-L--------------------------PFLTAIYADNNSLKK-LPDLP-------------- 214 (454)
T ss_dssp ECCSSCCSS-CC-CCTT-C--------------------------TTCCEEECCSSCCSS-CCCCC--------------
T ss_pred ECcCCcCCc-Cc-cccC-C--------------------------CCCCEEECCCCcCCc-CCCCc--------------
Confidence 555555444 22 1211 2 333444444444333 11111
Q ss_pred CccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhh
Q 048351 437 GPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLL 516 (850)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 516 (850)
++|++|++++|.++ .+|. +..+++|++|++++|++++ +|.. +++|++|++++|++++ +|..
T Consensus 215 -----------~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~- 275 (454)
T 1jl5_A 215 -----------LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL- 275 (454)
T ss_dssp -----------TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC-
T ss_pred -----------CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc-
Confidence 34556666666555 4442 5566666666666666653 3322 2556666666666654 3432
Q ss_pred cCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCc
Q 048351 517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT 596 (850)
Q Consensus 517 ~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 596 (850)
.++|++|++++|++++ +|. ..++|++|++++|++++. +. -.++|++|++++|++++ +|.. ++
T Consensus 276 --~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~--- 337 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PP--- 337 (454)
T ss_dssp --CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CT---
T ss_pred --cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CC---
Confidence 2566666666666653 332 124666666666666642 21 11466677777776664 3332 11
Q ss_pred cccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecC
Q 048351 597 QERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLS 676 (850)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 676 (850)
.|+.|++++|+++ .+|. .+++|+.|+++
T Consensus 338 ------------------------------------------------~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 338 ------------------------------------------------RLERLIASFNHLA-EVPE---LPQNLKQLHVE 365 (454)
T ss_dssp ------------------------------------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred ------------------------------------------------cCCEEECCCCccc-cccc---hhhhccEEECC
Confidence 2266777777776 3444 35667777777
Q ss_pred CCcCcc--CCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc--cCCC
Q 048351 677 RNNLTG--YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG--KIPT 734 (850)
Q Consensus 677 ~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~iP~ 734 (850)
+|++++ .+|.+++++ +.|++.|.+|.. +++|++||+++|+++| .+|.
T Consensus 366 ~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp SSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred CCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 777776 455554432 335555666553 3566777777777766 5554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-39 Score=366.08 Aligned_cols=394 Identities=18% Similarity=0.153 Sum_probs=279.0
Q ss_pred cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCC
Q 048351 200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP 279 (850)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip 279 (850)
+.++.+++.++.++. + .++|++|+|++|.+++..+ ..+.++ ++|++|++++|.+.+.++ |
T Consensus 13 ~~~~c~~~~l~~lp~----l--~~~l~~L~Ls~n~i~~~~~----~~~~~l-~~L~~L~L~~n~~~~~i~---------~ 72 (455)
T 3v47_A 13 YNAICINRGLHQVPE----L--PAHVNYVDLSLNSIAELNE----TSFSRL-QDLQFLKVEQQTPGLVIR---------N 72 (455)
T ss_dssp TEEECCSSCCSSCCC----C--CTTCCEEECCSSCCCEECT----TTTSSC-TTCCEEECCCCSTTCEEC---------T
T ss_pred cccCcCCCCcccCCC----C--CCccCEEEecCCccCcCCh----hHhccC-ccccEEECcCCcccceEC---------c
Confidence 355666666666432 1 1567777777777766555 445555 778888888887765542 2
Q ss_pred CCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEcc
Q 048351 280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS 359 (850)
Q Consensus 280 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls 359 (850)
..|..+++|++|++++|++++..|..|+++++|++|++++|.+++..+.. ..+..+++|++|+++
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------~~~~~l~~L~~L~L~ 137 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------NFFKPLTSLEMLVLR 137 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---------------STTTTCTTCCEEECC
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc---------------ccccCcccCCEEECC
Confidence 34677788888888888888777778888888888888888877644331 125667778888888
Q ss_pred CCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcc
Q 048351 360 SAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPI 439 (850)
Q Consensus 360 ~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~ 439 (850)
+|.+++..|..+...+++|++|++++|.+++..|..+.....
T Consensus 138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-------------------------------------- 179 (455)
T 3v47_A 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-------------------------------------- 179 (455)
T ss_dssp SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT--------------------------------------
T ss_pred CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc--------------------------------------
Confidence 888777767664444467777777777777666655422111
Q ss_pred ccccccCCCCccEEEccCCCCCCCCCcc--------cccCCCCCEEEcCCCcccccCCCccccc---cCccEEeccCCcc
Q 048351 440 SFLCSFSGQNLVYLDLSSNLLSGKLPDC--------WLQFNMLRILNLANNNFSGKIPNSCGYL---QKMLTLSLHHNNF 508 (850)
Q Consensus 440 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l 508 (850)
.+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+... ++|+.|++++|.+
T Consensus 180 --------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 180 --------KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp --------CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred --------ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 34455555555554333221 2234556666666666665555544433 5666677766665
Q ss_pred ccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcc
Q 048351 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKC 588 (850)
Q Consensus 509 ~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 588 (850)
.+.... ...++.+.. ..+. . . ..++|++|++++|.+++..|..+..+++|++|++++|++++..|..
T Consensus 252 ~~~~~~-~~~~~~~~~-----~~~~-----~-~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 252 MGSSFG-HTNFKDPDN-----FTFK-----G-L-EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp TSCCTT-CCSSCCCCT-----TTTG-----G-G-TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccccc-hhhhccCcc-----cccc-----c-c-cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 432110 111111110 0110 0 0 2468999999999999999999999999999999999999888887
Q ss_pred ccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccc
Q 048351 589 FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLV 668 (850)
Q Consensus 589 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 668 (850)
+.++++| ++|+|++|++++..|..++.++
T Consensus 319 ~~~l~~L---------------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 319 FWGLTHL---------------------------------------------------LKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTTCTTC---------------------------------------------------CEEECCSSCCCEECGGGGTTCT
T ss_pred hcCcccC---------------------------------------------------CEEECCCCccCCcChhHhcCcc
Confidence 7776665 8899999999988899999999
Q ss_pred cCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcC
Q 048351 669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQL 738 (850)
Q Consensus 669 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 738 (850)
+|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999999999999999999999999999999888888899999999999999999999865433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-38 Score=360.14 Aligned_cols=379 Identities=21% Similarity=0.167 Sum_probs=230.2
Q ss_pred CCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcE
Q 048351 148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227 (850)
Q Consensus 148 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 227 (850)
++|++|+|++|.+++..|..|+++++|++|++++|.+.....+..+.++++|++|++++|++++. .+..++++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE--CTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc--ChhhccCcccCCE
Confidence 34444444444444444444444444444444444432112222344444444444444444432 2334444455555
Q ss_pred EEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh
Q 048351 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ 307 (850)
Q Consensus 228 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 307 (850)
|++++|.+++..+.. ..+..+ ++|++|++++|++++..|.. .+..+++|++|++++|++++..|..+.
T Consensus 108 L~L~~n~l~~~~~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 108 LTLTQCNLDGAVLSG--NFFKPL-TSLEMLVLRDNNIKKIQPAS---------FFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp EECTTSCCBTHHHHS--STTTTC-TTCCEEECCSSBCCSCCCCG---------GGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred EeCCCCCCCccccCc--ccccCc-ccCCEEECCCCccCccCccc---------ccCCCCcccEEeCCCCcccccChhhhh
Confidence 555555444322100 112222 55555555555555432211 034455666666666666655555555
Q ss_pred cC--CCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcC--cCCCEEec
Q 048351 308 NM--FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTS--HKLADLNF 383 (850)
Q Consensus 308 ~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L 383 (850)
.+ .+|+.|++++|.+.+..+... .......+..+++|+.|++++|.+++..|..+.... .+|+.|++
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~---------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWL---------GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCT---------THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccccccccccccccCcccccchhhc---------cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 44 456666666666554322110 000001122345566666666666555555544321 34555555
Q ss_pred ccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC
Q 048351 384 SHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK 463 (850)
Q Consensus 384 s~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 463 (850)
++|.+.+.... .+.+.+..+ .. ......++|++|++++|.+++.
T Consensus 247 ~~~~~~~~~~~----------------~~~~~~~~~-------------~~-------~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 247 SNSYNMGSSFG----------------HTNFKDPDN-------------FT-------FKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TTCTTTSCCTT----------------CCSSCCCCT-------------TT-------TGGGTTSCCCEEECCSSCCCEE
T ss_pred ccccccccccc----------------hhhhccCcc-------------cc-------cccccccCceEEEecCcccccc
Confidence 55544322110 001110000 00 0011236899999999999998
Q ss_pred CCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhc
Q 048351 464 LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGES 543 (850)
Q Consensus 464 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~ 543 (850)
.|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..+.++++|++|++++|++++..|..+. .
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-G 369 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-T
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-c
Confidence 999999999999999999999998899999999999999999999988899999999999999999999976677776 6
Q ss_pred CCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCC
Q 048351 544 LLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP 586 (850)
Q Consensus 544 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 586 (850)
+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999998777778999999999999999998777
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-39 Score=348.06 Aligned_cols=293 Identities=28% Similarity=0.402 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CCEEEEEcCCCCCcccchhhhhccCCCC
Q 048351 34 RCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN--WRGVRCSNQT--GHVKVLDLHGTGRVKVLDIQTRVMSGNA 109 (850)
Q Consensus 34 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~l~L~~~~~l~~l~l~~~~~~~~~ 109 (850)
.|.++|++||++||+++.+|. .+++|. .+++||. |.||+|+... ++|+.++|++ +
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----------------~ 60 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----------------L 60 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----------------C
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC-----------------C
Confidence 599999999999999998876 788997 4678998 9999998654 8999999998 5
Q ss_pred CCcc--cccccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCC
Q 048351 110 SLRG--TLNPALLKLHYLRHLDLSF-NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLR 186 (850)
Q Consensus 110 ~l~g--~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 186 (850)
.+.| .+|+++.++++|++|+|++ |.+.+. +|..++++++|++|+|++|.+++.+|..|+++++|++|++++|++.
T Consensus 61 ~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 138 (313)
T 1ogq_A 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS- 138 (313)
T ss_dssp CCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-
T ss_pred CccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-
Confidence 7888 8999999999999999995 999986 9999999999999999999999999999999999999999999863
Q ss_pred CCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCC-CCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCC
Q 048351 187 AGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP-SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265 (850)
Q Consensus 187 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 265 (850)
...+..+..+++|++|++++|++++. ++..+..++ +|++|++++|.+++..+ ..+... + |++|++++|+++
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~----~~~~~l-~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIP----PTFANL-N-LAFVDLSRNMLE 210 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECC----GGGGGC-C-CSEEECCSSEEE
T ss_pred CcCChHHhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCC----hHHhCC-c-ccEEECcCCccc
Confidence 23445677788888888888877643 455666665 66666666666665444 333333 3 666666666555
Q ss_pred CccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCCh
Q 048351 266 ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345 (850)
Q Consensus 266 ~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~ 345 (850)
+.+ |..+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|.
T Consensus 211 ~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~----------------- 262 (313)
T 1ogq_A 211 GDA----------SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ----------------- 262 (313)
T ss_dssp ECC----------GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-----------------
T ss_pred CcC----------CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-----------------
Confidence 442 22344555566666666665544443 45555555555555555543332
Q ss_pred hccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCc
Q 048351 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQ 387 (850)
Q Consensus 346 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~ 387 (850)
++..+++|+.|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 2455555555555555555554443 222345555555554
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6e-38 Score=352.78 Aligned_cols=382 Identities=23% Similarity=0.335 Sum_probs=241.7
Q ss_pred CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCC-------------CEEeCCCCCCCCCCCcccCCCCCCc
Q 048351 109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKL-------------EYLDLFAASFSGPIPPLLGNLSRLQ 175 (850)
Q Consensus 109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~~p~~l~~l~~L~ 175 (850)
+.+ |.+|++++++++|++|++++|.++|. +|..++++++| ++|++++|.+++ +|.. .++|+
T Consensus 21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~ 94 (454)
T 1jl5_A 21 SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLE 94 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCS
T ss_pred Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCC
Confidence 466 88999999999999999999999885 89999988865 999999999886 4442 37899
Q ss_pred EEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCccc
Q 048351 176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE 255 (850)
Q Consensus 176 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 255 (850)
+|++++|++... +. .+++|++|++++|++++.+..+ ++|++|++++|.+++. | ++.++ ++|+
T Consensus 95 ~L~l~~n~l~~l--p~---~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~l-p-----~~~~l-~~L~ 156 (454)
T 1jl5_A 95 SLVASCNSLTEL--PE---LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKL-P-----ELQNS-SFLK 156 (454)
T ss_dssp EEECCSSCCSSC--CC---CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSSC-C-----CCTTC-TTCC
T ss_pred EEEccCCcCCcc--cc---ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCCC-c-----ccCCC-CCCC
Confidence 999999986442 21 2478999999999888754321 6889999999988873 3 34555 8899
Q ss_pred EEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccc
Q 048351 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFS 335 (850)
Q Consensus 256 ~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 335 (850)
+|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|++++. |.
T Consensus 157 ~L~l~~N~l~~-----------lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~------- 212 (454)
T 1jl5_A 157 IIDVDNNSLKK-----------LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD------- 212 (454)
T ss_dssp EEECCSSCCSC-----------CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC-------
T ss_pred EEECCCCcCcc-----------cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC-------
Confidence 99999998876 33322 488999999999886 56 588889999999999988753 21
Q ss_pred cccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCc
Q 048351 336 YLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLE 415 (850)
Q Consensus 336 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~ 415 (850)
..++|+.|++++|.++ .+|. +. .+++|++|++++|++++ +|... .+++.|++++|+++
T Consensus 213 -------------~~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 213 -------------LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDLP-----PSLEALNVRDNYLT 270 (454)
T ss_dssp -------------CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSCC-----TTCCEEECCSSCCS
T ss_pred -------------CcCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccccc-----cccCEEECCCCccc
Confidence 1247888888888887 4553 43 34678888888888875 44433 67788888888887
Q ss_pred ccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccC-CCCCEEEcCCCcccccCCCcccc
Q 048351 416 GPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQF-NMLRILNLANNNFSGKIPNSCGY 494 (850)
Q Consensus 416 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 494 (850)
+ +|..+++|++|++++|.+++... . .++|++|++++|.+++ ++ .+ ++|++|++++|++++ +|..
T Consensus 271 ~-l~~~~~~L~~L~ls~N~l~~l~~-~----~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 271 D-LPELPQSLTFLDVSENIFSGLSE-L----PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp C-CCCCCTTCCEEECCSSCCSEESC-C----CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---
T ss_pred c-cCcccCcCCEEECcCCccCcccC-c----CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---
Confidence 6 45556778888888888776321 1 1567888888887774 22 22 477888888888775 5543
Q ss_pred ccCccEEeccCCccccCCchhhcCCCCcCeecccccccee--ecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572 (850)
Q Consensus 495 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 572 (850)
+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++. . ++.|.+.+.+|.. +++|+
T Consensus 336 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~-------~--L~~n~~~~~i~~~---~~~L~ 399 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE-------D--LRMNSHLAEVPEL---PQNLK 399 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC-------E--EECCC----------------
T ss_pred CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH-------h--hhhcccccccccc---cCcCC
Confidence 467888888888877 4555 46778888888888875 5555432 1 2335555555542 35677
Q ss_pred eeecccccCcc--cCCccccC
Q 048351 573 ILDLSLNNISG--NIPKCFNN 591 (850)
Q Consensus 573 ~L~Ls~N~l~~--~~p~~~~~ 591 (850)
.|++++|++++ .+|..+..
T Consensus 400 ~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 400 QLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp ---------------------
T ss_pred EEECCCCcCCccccchhhHhh
Confidence 77777777776 56655443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.7e-36 Score=339.62 Aligned_cols=367 Identities=20% Similarity=0.189 Sum_probs=292.9
Q ss_pred CcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCc
Q 048351 111 LRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL 190 (850)
Q Consensus 111 l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 190 (850)
..+..+.+++++++|++|++++|.+++ +| .++.+++|++|+|++|.+++. | ++.+++|++|++++|++...
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---
T ss_pred cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---
Confidence 344556678999999999999999996 45 688999999999999999974 4 89999999999999997543
Q ss_pred cccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccch
Q 048351 191 DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYP 270 (850)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 270 (850)
+ ++++++|++|++++|++++. + ++.+++|++|++++|.+++. .+..+ ++|++|++++|+..+.+
T Consensus 101 ~-~~~l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l-------~l~~l-~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 101 D-VTPLTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI-------DVSHN-TQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp C-CTTCTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC-------CCTTC-TTCCEEECTTCSCCCCC--
T ss_pred e-cCCCCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee-------ccccC-CcCCEEECCCCCccccc--
Confidence 2 88999999999999999985 2 78999999999999999874 23445 89999999999765542
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCC
Q 048351 271 WLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ 350 (850)
Q Consensus 271 ~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l 350 (850)
.++.+++|++|++++|++++ +| +..+++|+.|++++|++++. + +..+
T Consensus 165 ----------~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~-------------------l~~l 211 (457)
T 3bz5_A 165 ----------DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D-------------------LNQN 211 (457)
T ss_dssp ----------CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C-------------------CTTC
T ss_pred ----------ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c-------------------cccC
Confidence 26788999999999999997 45 88999999999999998864 1 6778
Q ss_pred CCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEc
Q 048351 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430 (850)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~L 430 (850)
++|+.|++++|++++ +| +. .+++|++|++++|++++..+..+ .+++.|+++.|+ ++.+++
T Consensus 212 ~~L~~L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~~~~~l-----~~L~~L~l~~n~-----------L~~L~l 271 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTELDVSTL-----SKLTTLHCIQTD-----------LLEIDL 271 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCCCCTTC-----TTCCEEECTTCC-----------CSCCCC
T ss_pred CCCCEEECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCcCHHHC-----CCCCEEeccCCC-----------CCEEEC
Confidence 999999999999998 45 33 34789999999999987655444 778888887764 456778
Q ss_pred cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcccc
Q 048351 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG 510 (850)
Q Consensus 431 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 510 (850)
++|.+.+.++. ..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++
T Consensus 272 ~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 272 THNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC
T ss_pred CCCccCCcccc---cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc
Confidence 88887776653 2457888888888887766663 3445555555544 678889999999887
Q ss_pred CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN 590 (850)
Q Consensus 511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 590 (850)
. + +..+++|+.|++++|++++ ++.|..|++++|.+.|. +.+..|+.+++++|+++|.+|..+.
T Consensus 333 l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 333 L-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp C-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred c-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 3 3 7888899999999998873 34566677888888876 3456788889999999999987653
Q ss_pred C
Q 048351 591 N 591 (850)
Q Consensus 591 ~ 591 (850)
.
T Consensus 396 ~ 396 (457)
T 3bz5_A 396 D 396 (457)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-36 Score=336.83 Aligned_cols=360 Identities=21% Similarity=0.193 Sum_probs=206.1
Q ss_pred CCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhh
Q 048351 140 IPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV 219 (850)
Q Consensus 140 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l 219 (850)
.+..++++++|++|++++|.+++. | .++.+++|++|++++|++... + ++.+++|++|++++|++++. .+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~-~~~l~~L~~L~Ls~N~l~~~-----~~ 102 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---D-LSQNTNLTYLACDSNKLTNL-----DV 102 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCC-----CC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---c-cccCCCCCEEECcCCCCcee-----ec
Confidence 445667788888888888888764 4 577777777777777775332 1 56666666666666666653 14
Q ss_pred cCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCC
Q 048351 220 DKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299 (850)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~ 299 (850)
+.+++|++|++++|.+++. | ++.+++|++|++++|+++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l----------------------------------------~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL----------------------------------------D--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC----------------------------------------C--CTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCEEECCCCcCCee----------------------------------------c--CCCCCcCCEEECCCCccc
Confidence 4455555555555544432 1 333444444444444444
Q ss_pred cccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCC
Q 048351 300 GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLA 379 (850)
Q Consensus 300 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 379 (850)
+. + ++++++|++|++++|...+.++ +..+++|+.|++++|.+++. | +. .+++|+
T Consensus 141 ~l-~--l~~l~~L~~L~l~~n~~~~~~~-------------------~~~l~~L~~L~ls~n~l~~l-~--l~-~l~~L~ 194 (457)
T 3bz5_A 141 EI-D--VSHNTQLTELDCHLNKKITKLD-------------------VTPQTQLTTLDCSFNKITEL-D--VS-QNKLLN 194 (457)
T ss_dssp CC-C--CTTCTTCCEEECTTCSCCCCCC-------------------CTTCTTCCEEECCSSCCCCC-C--CT-TCTTCC
T ss_pred ee-c--cccCCcCCEEECCCCCcccccc-------------------cccCCcCCEEECCCCcccee-c--cc-cCCCCC
Confidence 32 1 4444455555555443222111 23334444444444443331 1 11 112333
Q ss_pred EEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCC
Q 048351 380 DLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL 459 (850)
Q Consensus 380 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 459 (850)
.|++++|++++. + + ..+++|++|++++|+
T Consensus 195 ~L~l~~N~l~~~-~--l------------------------------------------------~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 195 RLNCDTNNITKL-D--L------------------------------------------------NQNIQLTFLDCSSNK 223 (457)
T ss_dssp EEECCSSCCSCC-C--C------------------------------------------------TTCTTCSEEECCSSC
T ss_pred EEECcCCcCCee-c--c------------------------------------------------ccCCCCCEEECcCCc
Confidence 333333333321 0 0 022456666666666
Q ss_pred CCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchh
Q 048351 460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW 539 (850)
Q Consensus 460 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~ 539 (850)
+++ +| +..+++|++|++++|++++.. ++.+++|+.|++++| +|+.|++++|++.+.+|.
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~- 282 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA- 282 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC-
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc-
Confidence 664 34 556666666666666666532 334556666665554 344566666666656652
Q ss_pred HHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccC
Q 048351 540 IGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTML 619 (850)
Q Consensus 540 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 619 (850)
. .+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 283 -~-~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------------------------------- 317 (457)
T 3bz5_A 283 -E-GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------------------------------- 317 (457)
T ss_dssp -T-TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------------------------
T ss_pred -c-ccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------------------------
Confidence 1 456666666666665555543 2344444444443
Q ss_pred ccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeC
Q 048351 620 PVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL 699 (850)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 699 (850)
+.|+.|++++|++++. + ++.+++|+.|++++|++++. +.|+.|++
T Consensus 318 ------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l 362 (457)
T 3bz5_A 318 ------------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPA 362 (457)
T ss_dssp ------------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSG
T ss_pred ------------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccc
Confidence 2237888888888874 3 78888888899998888862 56777888
Q ss_pred CCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351 700 SRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG 735 (850)
Q Consensus 700 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 735 (850)
++|+++|. ..+..|..+++++|+++|.||..
T Consensus 363 ~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 363 LNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 88888876 23456777889999999998864
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=339.59 Aligned_cols=347 Identities=18% Similarity=0.170 Sum_probs=214.0
Q ss_pred cEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCcccccccccccccc
Q 048351 255 ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNF 334 (850)
Q Consensus 255 ~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l 334 (850)
+.++.++++++. +|..+. +++++|+|++|++++..|..|.++++|++|+|++|.+++..+..
T Consensus 14 ~~v~c~~~~l~~-----------ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----- 75 (477)
T 2id5_A 14 RAVLCHRKRFVA-----------VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA----- 75 (477)
T ss_dssp TEEECCSCCCSS-----------CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-----
T ss_pred CEEEeCCCCcCc-----------CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-----
Confidence 456666666653 444332 46778888888887766777777777888888777776654432
Q ss_pred ccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcC
Q 048351 335 SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414 (850)
Q Consensus 335 ~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l 414 (850)
|.++++|++|++++|.+++..+..|.
T Consensus 76 ------------~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------------------------ 101 (477)
T 2id5_A 76 ------------FNNLFNLRTLGLRSNRLKLIPLGVFT------------------------------------------ 101 (477)
T ss_dssp ------------TTTCTTCCEEECCSSCCCSCCTTSST------------------------------------------
T ss_pred ------------hhCCccCCEEECCCCcCCccCccccc------------------------------------------
Confidence 44555555555555544432221111
Q ss_pred cccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCcccc
Q 048351 415 EGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGY 494 (850)
Q Consensus 415 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 494 (850)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..
T Consensus 102 -------------------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 102 -------------------------------GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp -------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred -------------------------------CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC
Confidence 1245555666666655555555666666666666666666655666666
Q ss_pred ccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCccee
Q 048351 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL 574 (850)
Q Consensus 495 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 574 (850)
+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+.+|.......+|+.|
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEE
Confidence 6666666666666665555556666666666666666663333233 356666666666666666666555555567777
Q ss_pred ecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCC
Q 048351 575 DLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSN 654 (850)
Q Consensus 575 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 654 (850)
++++|++++..+..+.++++| +.|+|++|
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~n 258 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYL---------------------------------------------------RFLNLSYN 258 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTC---------------------------------------------------CEEECCSS
T ss_pred ECcCCcccccCHHHhcCcccc---------------------------------------------------CeeECCCC
Confidence 777777664332344443333 66777777
Q ss_pred CCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351 655 KLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 655 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
++++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|++|++++|++++..+.
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 77766666677777777777777777777777777777777777777777776666777777777777777777765432
Q ss_pred CCcCCCcCccccCCCCCCCCCC
Q 048351 735 GTQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 735 ~~~~~~~~~~~~~gN~~lc~~~ 756 (850)
...+.......+.++...|..|
T Consensus 339 ~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 339 LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp HHHHTTTTSSCCTTCCCBEEES
T ss_pred HhHHhhhhccccCccCceeCCc
Confidence 2222222223455666666443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-34 Score=326.15 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=78.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351 120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL 199 (850)
Q Consensus 120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 199 (850)
..+++++.|+++++.+.. +|. +..+++|++|+|++|.+++..| +.++++|++|++++|++... + .+.++++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--T-PLANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-GGTTCTTC
T ss_pred hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC--h-hhcCCCCC
Confidence 456789999999999884 564 6779999999999999986544 88899999999988876322 1 27777788
Q ss_pred cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCC
Q 048351 200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL 237 (850)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 237 (850)
++|++++|.+++.+ .+..+++|++|++++|.+.+
T Consensus 115 ~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 115 TGLTLFNNQITDID----PLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp CEEECCSSCCCCCG----GGTTCTTCSEEEEEEEEECC
T ss_pred CEEECCCCCCCCCh----HHcCCCCCCEEECCCCccCC
Confidence 88888877777642 25666666666666666554
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5e-36 Score=321.03 Aligned_cols=259 Identities=33% Similarity=0.535 Sum_probs=243.5
Q ss_pred CCccEEEccCCCCCC--CCCcccccCCCCCEEEcCC-CcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351 448 QNLVYLDLSSNLLSG--KLPDCWLQFNMLRILNLAN-NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 524 (850)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCC-CcceeecccccCcccCCccccCcccCccccccCc
Q 048351 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA-DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNS 603 (850)
Q Consensus 525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 603 (850)
|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999989998887 699999999999999999999999998 999999999999999998776554 3
Q ss_pred cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC
Q 048351 604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY 683 (850)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 683 (850)
+.|+|++|++++.+|..+..+++|+.|+|++|++++.
T Consensus 200 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 200 -------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp -------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred -------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 8999999999999999999999999999999999987
Q ss_pred CCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCCCCC
Q 048351 684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKC 761 (850)
Q Consensus 684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c 761 (850)
+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.|||++||.|+. .|
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 766 88899999999999999999999999999999999999999999999988899999999999999998875 56
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-34 Score=323.20 Aligned_cols=216 Identities=26% Similarity=0.362 Sum_probs=178.0
Q ss_pred CCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351 446 SGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 525 (850)
.+++|++|++++|.+++. ..+..+++|++|++++|.+++..| ++.+++|++|++++|++++. ..+..+++|+.|
T Consensus 175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 248 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248 (466)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence 347788888888888743 347888889999999988886655 67788899999999988753 357888999999
Q ss_pred ccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605 (850)
Q Consensus 526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 605 (850)
++++|++++..| +. .+++|++|++++|.+++..+ +..+++|+.|++++|++++..| +..+
T Consensus 249 ~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l------------- 308 (466)
T 1o6v_A 249 DLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL------------- 308 (466)
T ss_dssp ECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC-------------
T ss_pred ECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC-------------
Confidence 999999985443 33 68999999999999986554 7889999999999999886433 3333
Q ss_pred cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
+.|+.|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 309 --------------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 309 --------------------------------------KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp --------------------------------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred --------------------------------------CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence 344899999999998776 78999999999999999976
Q ss_pred ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
+.++++++|+.|++++|++++.+| +..+++|++|++++|++++.
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 579999999999999999998887 89999999999999999973
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=318.56 Aligned_cols=323 Identities=18% Similarity=0.180 Sum_probs=258.9
Q ss_pred CEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCC
Q 048351 354 SVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKN 433 (850)
Q Consensus 354 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n 433 (850)
+.++.+++.++. +|..+ .++++.|++++|.+++..+..+ ... .+|++|++++|.+++..|..+.
T Consensus 14 ~~v~c~~~~l~~-ip~~~---~~~l~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~---------- 77 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI---PTETRLLDLGKNRIKTLNQDEF-ASF-PHLEELELNENIVSAVEPGAFN---------- 77 (477)
T ss_dssp TEEECCSCCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTT----------
T ss_pred CEEEeCCCCcCc-CCCCC---CCCCcEEECCCCccceECHhHc-cCC-CCCCEEECCCCccCEeChhhhh----------
Confidence 456666666653 34332 2356777777777766655555 222 4555555555554443332221
Q ss_pred cCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCc
Q 048351 434 KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP 513 (850)
Q Consensus 434 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 513 (850)
.+++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+
T Consensus 78 ------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 78 ------------NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp ------------TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred ------------CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 45789999999999997777778999999999999999998888899999999999999999998888
Q ss_pred hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcc
Q 048351 514 SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593 (850)
Q Consensus 514 ~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 593 (850)
..|.++++|++|++++|+++ .+|...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 89999999999999999998 56665555799999999999999988888899999999999999988777665433222
Q ss_pred cCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeE
Q 048351 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGL 673 (850)
Q Consensus 594 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 673 (850)
+|+.|+|++|++++..+..+..+++|+.|
T Consensus 225 ---------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 225 ---------------------------------------------------NLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp ---------------------------------------------------CCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ---------------------------------------------------cccEEECcCCcccccCHHHhcCccccCee
Confidence 34899999999997777889999999999
Q ss_pred ecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCC
Q 048351 674 NLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPEL 752 (850)
Q Consensus 674 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~l 752 (850)
+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+....+.+||+.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 99999999988889999999999999999999999999999999999999999999654432 34456667779999999
Q ss_pred CCCC
Q 048351 753 CGLP 756 (850)
Q Consensus 753 c~~~ 756 (850)
|+|+
T Consensus 334 c~c~ 337 (477)
T 2id5_A 334 CDCR 337 (477)
T ss_dssp CSGG
T ss_pred Cccc
Confidence 9875
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-33 Score=308.06 Aligned_cols=312 Identities=21% Similarity=0.212 Sum_probs=195.7
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCC
Q 048351 120 LKLHYLRHLDLSFNNFSGSQIPM-FIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFS 198 (850)
Q Consensus 120 ~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 198 (850)
..++++++|++++|.++. +|. .+..+++|++|+|++|.+++..|..|+.+++|++|++++|.+.. ..+..++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCC
Confidence 457899999999999884 555 46789999999999999987777788888888888888887522 22233444444
Q ss_pred ccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCC
Q 048351 199 LRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI 278 (850)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~i 278 (850)
|++|++++|.++.. ++ ..+..+ ++|++|++++|++++. .
T Consensus 119 L~~L~L~~n~l~~l--------------------------~~----~~~~~l-~~L~~L~L~~n~l~~~----------~ 157 (390)
T 3o6n_A 119 LTVLVLERNDLSSL--------------------------PR----GIFHNT-PKLTTLSMSNNNLERI----------E 157 (390)
T ss_dssp CCEEECCSSCCCCC--------------------------CT----TTTTTC-TTCCEEECCSSCCCBC----------C
T ss_pred CCEEECCCCccCcC--------------------------CH----HHhcCC-CCCcEEECCCCccCcc----------C
Confidence 44444444444432 21 111122 4444444444444432 1
Q ss_pred CCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEc
Q 048351 279 PDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI 358 (850)
Q Consensus 279 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~L 358 (850)
|..++.+++|++|++++|++++. .+..+++|+.|++++|.+++..
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~-------------------------------- 202 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA-------------------------------- 202 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEE--------------------------------
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccC--------------------------------
Confidence 22344455555555555555532 1334445555555555443210
Q ss_pred cCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCc
Q 048351 359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGP 438 (850)
Q Consensus 359 s~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~ 438 (850)
..++|++|++++|.+... |. .
T Consensus 203 ---------------~~~~L~~L~l~~n~l~~~-~~-------------------------~------------------ 223 (390)
T 3o6n_A 203 ---------------IPIAVEELDASHNSINVV-RG-------------------------P------------------ 223 (390)
T ss_dssp ---------------CCSSCSEEECCSSCCCEE-EC-------------------------C------------------
T ss_pred ---------------CCCcceEEECCCCeeeec-cc-------------------------c------------------
Confidence 012344455554444321 10 0
Q ss_pred cccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcC
Q 048351 439 ISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKN 518 (850)
Q Consensus 439 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 518 (850)
..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..
T Consensus 224 -------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 293 (390)
T 3o6n_A 224 -------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 293 (390)
T ss_dssp -------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC
T ss_pred -------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC
Confidence 014566777777776643 456777777777777777777777777777778888888887774 5556667
Q ss_pred CCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCccc
Q 048351 519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN 584 (850)
Q Consensus 519 l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 584 (850)
+++|++|++++|+++ .+|..+. .+++|++|++++|.+++. + +..+++|+.|++++|++++.
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 788888888888887 6777666 578888888888888744 2 56778888888888888753
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-33 Score=307.29 Aligned_cols=335 Identities=18% Similarity=0.203 Sum_probs=240.3
Q ss_pred CCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364 (850)
Q Consensus 285 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (850)
++++++|++++|.++...+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----------------~~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------FAYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------TTTCTTCCEEECCSSCCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-----------------ccCCCCcCEEECCCCCCC
Confidence 457777888877777544455677888888888888776554332 566677777777777776
Q ss_pred CCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccc
Q 048351 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS 444 (850)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 444 (850)
+..|..+... ++|++|++++|.++...+..+ .
T Consensus 107 ~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~-~---------------------------------------------- 138 (390)
T 3o6n_A 107 YLPPHVFQNV-PLLTVLVLERNDLSSLPRGIF-H---------------------------------------------- 138 (390)
T ss_dssp CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTT-T----------------------------------------------
T ss_pred cCCHHHhcCC-CCCCEEECCCCccCcCCHHHh-c----------------------------------------------
Confidence 6555554433 466666666666653222222 0
Q ss_pred cCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351 445 FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524 (850)
Q Consensus 445 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 524 (850)
.+++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++ +...++|+.
T Consensus 139 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~ 209 (390)
T 3o6n_A 139 -NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEE 209 (390)
T ss_dssp -TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSE
T ss_pred -CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceE
Confidence 236777777777777766677777788888888888887753 25567788888888887763 233457888
Q ss_pred eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS 604 (850)
Q Consensus 525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 604 (850)
|++++|.+. .+|... .++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 210 L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------- 274 (390)
T 3o6n_A 210 LDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL--------- 274 (390)
T ss_dssp EECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC---------
T ss_pred EECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC---------
Confidence 888888887 555532 56888888888888754 467788888888888888887777777666555
Q ss_pred ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351 605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 684 (850)
+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+
T Consensus 275 ------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~ 310 (390)
T 3o6n_A 275 ------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 310 (390)
T ss_dssp ------------------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred ------------------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ec
Confidence 788888888874 5666778889999999999998 46
Q ss_pred CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCC
Q 048351 685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 756 (850)
|..++.+++|+.|++++|+++.. | +..+++|++|++++|++++... ...+..+....+.+++..|.++
T Consensus 311 ~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred CccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 77788899999999999999865 3 6778899999999999987522 1234445555677777777653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.7e-33 Score=324.77 Aligned_cols=335 Identities=18% Similarity=0.203 Sum_probs=250.8
Q ss_pred CCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364 (850)
Q Consensus 285 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (850)
+.+++.+++++|.+....+..+.++++|++|+|++|.+++..+.. +..+++|+.|++++|.++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------~~~l~~L~~L~L~~n~l~ 112 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------FAYAHTIQKLYMGFNAIR 112 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------TTTCTTCCEEECCSSCCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-----------------hcCCCCCCEEECCCCcCC
Confidence 456777777777777655566777778888888887777654432 566677777777777766
Q ss_pred CCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccc
Q 048351 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS 444 (850)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 444 (850)
+..|..|... ++|++|++++|.+++..+..+ .
T Consensus 113 ~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~-~---------------------------------------------- 144 (597)
T 3oja_B 113 YLPPHVFQNV-PLLTVLVLERNDLSSLPRGIF-H---------------------------------------------- 144 (597)
T ss_dssp CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTT-T----------------------------------------------
T ss_pred CCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHh-c----------------------------------------------
Confidence 6555554433 466666666666653332222 0
Q ss_pred cCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351 445 FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524 (850)
Q Consensus 445 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 524 (850)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++. .++.+++|+.|++++|.+++ +...++|+.
T Consensus 145 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~ 215 (597)
T 3oja_B 145 -NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEE 215 (597)
T ss_dssp -TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred -cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhhe
Confidence 236788888888888877777788888888888888888754 25567788888888888764 234567888
Q ss_pred eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS 604 (850)
Q Consensus 525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 604 (850)
|++++|.++ .+|..+ .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+.++++|
T Consensus 216 L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------- 280 (597)
T 3oja_B 216 LDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL--------- 280 (597)
T ss_dssp EECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC---------
T ss_pred eeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC---------
Confidence 888888887 555443 4688999999999886 3568888999999999999988888877766665
Q ss_pred ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351 605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 684 (850)
+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+
T Consensus 281 ------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i 316 (597)
T 3oja_B 281 ------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 316 (597)
T ss_dssp ------------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred ------------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-cc
Confidence 789999999985 5777778899999999999999 57
Q ss_pred CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCC
Q 048351 685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 756 (850)
|..++.+++|+.|+|++|++++.. +..+++|++|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 888899999999999999998653 67788999999999999986432 345566666788999999764
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-32 Score=318.45 Aligned_cols=312 Identities=21% Similarity=0.190 Sum_probs=196.2
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCcc
Q 048351 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLR 200 (850)
Q Consensus 121 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 200 (850)
.+.+++.|++++|.+... .+..++++++|++|+|++|.+++..|..|+.+++|++|+|++|.+.. ..+..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence 467889999999998853 33456788999999999999988777788888888888888776422 2222334444444
Q ss_pred EEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCC
Q 048351 201 YLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD 280 (850)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~ 280 (850)
+|+|++|.++. .++ ..+..+ ++|++|+|++|.+++. .|.
T Consensus 127 ~L~L~~n~l~~--------------------------l~~----~~~~~l-~~L~~L~Ls~N~l~~~----------~~~ 165 (597)
T 3oja_B 127 VLVLERNDLSS--------------------------LPR----GIFHNT-PKLTTLSMSNNNLERI----------EDD 165 (597)
T ss_dssp EEECCSSCCCC--------------------------CCT----TTTTTC-TTCCEEECCSSCCCBC----------CTT
T ss_pred EEEeeCCCCCC--------------------------CCH----HHhccC-CCCCEEEeeCCcCCCC----------Chh
Confidence 44444444433 222 111222 4444444444444432 222
Q ss_pred CCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccC
Q 048351 281 APGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS 360 (850)
Q Consensus 281 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~ 360 (850)
.++.+++|++|++++|.+++.. ++.+++|+.|++++|.+++..
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~---------------------------------- 208 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA---------------------------------- 208 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEE----------------------------------
T ss_pred hhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccccc----------------------------------
Confidence 3444455555555555554321 233444455555444443211
Q ss_pred CcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccc
Q 048351 361 AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPIS 440 (850)
Q Consensus 361 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~ 440 (850)
..++|+.|++++|.+.... +.
T Consensus 209 -------------~~~~L~~L~ls~n~l~~~~--------------------------~~-------------------- 229 (597)
T 3oja_B 209 -------------IPIAVEELDASHNSINVVR--------------------------GP-------------------- 229 (597)
T ss_dssp -------------CCTTCSEEECCSSCCCEEE--------------------------CS--------------------
T ss_pred -------------CCchhheeeccCCcccccc--------------------------cc--------------------
Confidence 0123444444444443111 00
Q ss_pred cccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCC
Q 048351 441 FLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT 520 (850)
Q Consensus 441 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 520 (850)
..++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++ +|..+..++
T Consensus 230 -----~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 230 -----VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp -----CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred -----cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 01456777777777765 3567777888888888888887777778888888888888888875 566667788
Q ss_pred CcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCccc
Q 048351 521 HLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN 584 (850)
Q Consensus 521 ~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 584 (850)
+|+.|+|++|.++ .+|..+. .+++|++|++++|.+++. | +..+++|+.|++++|++++.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 8888888888887 7887776 588888888888888754 2 56778888899999888754
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1e-30 Score=284.88 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=43.9
Q ss_pred cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
+.|++++|++++. ..+..+++|+.|++++|++++..|..++.+++|++|++++|++++..| +..+++|++||+++|
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence 5555555555533 235555566666666666655555555666666666666666665444 555666666666666
Q ss_pred cCc
Q 048351 727 NLS 729 (850)
Q Consensus 727 ~l~ 729 (850)
+++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.6e-30 Score=283.44 Aligned_cols=308 Identities=22% Similarity=0.315 Sum_probs=184.5
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF 197 (850)
Q Consensus 118 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 197 (850)
.+..+++|++|++++|.+.. +|. ++.+++|++|++++|.+++. |. +..+++|++|++++|.+.. .+.+.+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD---ISALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---CGGGTTCT
T ss_pred cchhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC---chHHcCCC
Confidence 35678899999999999984 554 78899999999999999864 43 8899999999999997633 34578888
Q ss_pred CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS 277 (850)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ 277 (850)
+|++|++++|.+++.+ . +..+++|++|++++|......+ .+..+ ++|++|++++|.+.+..+
T Consensus 111 ~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~l~~n~~~~~~~-----~~~~l-~~L~~L~l~~~~~~~~~~-------- 172 (347)
T 4fmz_A 111 NLRELYLNEDNISDIS---P-LANLTKMYSLNLGANHNLSDLS-----PLSNM-TGLNYLTVTESKVKDVTP-------- 172 (347)
T ss_dssp TCSEEECTTSCCCCCG---G-GTTCTTCCEEECTTCTTCCCCG-----GGTTC-TTCCEEECCSSCCCCCGG--------
T ss_pred cCCEEECcCCcccCch---h-hccCCceeEEECCCCCCccccc-----chhhC-CCCcEEEecCCCcCCchh--------
Confidence 8888888888887742 2 6677777777777775444332 23333 566666666665554211
Q ss_pred CCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEE
Q 048351 278 IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD 357 (850)
Q Consensus 278 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~ 357 (850)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 173 ----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~---------------------------------- 212 (347)
T 4fmz_A 173 ----IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT---------------------------------- 212 (347)
T ss_dssp ----GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC----------------------------------
T ss_pred ----hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC----------------------------------
Confidence 3345555555555555553222 455555555555555544
Q ss_pred ccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcC
Q 048351 358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSG 437 (850)
Q Consensus 358 Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~ 437 (850)
+..+ + ..+++|++|++++|.+++..+ + .
T Consensus 213 -------~~~~--~-~~~~~L~~L~l~~n~l~~~~~--~-~--------------------------------------- 240 (347)
T 4fmz_A 213 -------DITP--V-ANMTRLNSLKIGNNKITDLSP--L-A--------------------------------------- 240 (347)
T ss_dssp -------CCGG--G-GGCTTCCEEECCSSCCCCCGG--G-T---------------------------------------
T ss_pred -------CCch--h-hcCCcCCEEEccCCccCCCcc--h-h---------------------------------------
Confidence 3322 1 122456666666665553221 1 0
Q ss_pred ccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhc
Q 048351 438 PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLK 517 (850)
Q Consensus 438 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 517 (850)
.+++|++|++++|.+++. +.+..+++|++|++++|.+++. +.+..+++|+.|++++|++++..|..+.
T Consensus 241 --------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 241 --------NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp --------TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred --------cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 113455555555555432 2355555556666666555532 2355556666666666666655555666
Q ss_pred CCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc
Q 048351 518 NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY 558 (850)
Q Consensus 518 ~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~ 558 (850)
.+++|++|++++|++++..| +. .+++|++|++++|.++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LA-SLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GG-GCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC--hh-hhhccceeehhhhccc
Confidence 66666666666666653333 22 4666666666666654
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.2e-32 Score=292.28 Aligned_cols=275 Identities=18% Similarity=0.215 Sum_probs=231.9
Q ss_pred CCCCcHHHHHHHHHhhhcCC-CCCCCCCCCCC-CCCCCCCccccceEecC--------CCCCEEEEEcCCCCCcccchhh
Q 048351 32 SIRCIEEERKALLKFKQGLV-DEFGFLSSWGS-EGEKKDCCNWRGVRCSN--------QTGHVKVLDLHGTGRVKVLDIQ 101 (850)
Q Consensus 32 ~~~~~~~~~~~Ll~~k~~~~-~~~~~l~~W~~-~~~~~~~c~w~gv~C~~--------~~~~v~~l~L~~~~~l~~l~l~ 101 (850)
...+..+|+.||++||+++. ++.+..++|.. .....++|.|.|++|+. ...+|+.++|++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~---------- 90 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS---------- 90 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES----------
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC----------
Confidence 44567789999999999984 77666778830 01457899999999952 346899999988
Q ss_pred hhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccC
Q 048351 102 TRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGY 181 (850)
Q Consensus 102 ~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 181 (850)
+.++ .+|+.++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++
T Consensus 91 -------n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 91 -------VPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp -------SCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred -------CCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 4565 78889999999999999999999 48999999999999999999999 7899999999999999999
Q ss_pred CCCCCCCCccc---------cccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCC
Q 048351 182 NKLLRAGNLDW---------ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSP 252 (850)
Q Consensus 182 N~l~~~~~~~~---------l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 252 (850)
|++.... +.. +.++++|++|++++|+++. +|..+..+++|++|++++|.+++.++ .+..+ +
T Consensus 160 n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l~~-----~l~~l-~ 229 (328)
T 4fcg_A 160 CPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSALGP-----AIHHL-P 229 (328)
T ss_dssp ETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCCCG-----GGGGC-T
T ss_pred CCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcCch-----hhccC-C
Confidence 8754332 222 4459999999999999996 56779999999999999999997654 45666 9
Q ss_pred cccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCcccccccccccc
Q 048351 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS 332 (850)
Q Consensus 253 ~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 332 (850)
+|++|++++|++.+. +|..++.+++|++|++++|++.+.+|..+.++++|++|+|++|.+.+.+|
T Consensus 230 ~L~~L~Ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP----- 294 (328)
T 4fcg_A 230 KLEELDLRGCTALRN----------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP----- 294 (328)
T ss_dssp TCCEEECTTCTTCCB----------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-----
T ss_pred CCCEEECcCCcchhh----------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-----
Confidence 999999999999987 56668889999999999999999999999999999999999999877554
Q ss_pred ccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351 333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364 (850)
Q Consensus 333 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (850)
.++..+++|+.+++..+.+.
T Consensus 295 ------------~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 ------------SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ------------GGGGGSCTTCEEECCGGGSC
T ss_pred ------------HHHhhccCceEEeCCHHHHH
Confidence 45889999999998877654
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.6e-34 Score=325.15 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=73.1
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCC----CCCcccCCCCCCcEEEccCCCCCCCCCccccccCC-
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSG----PIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF- 197 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~- 197 (850)
++|++|||++|+++.......+..+++|++|+|++|.+++ .++..+..+++|++|++++|.+...+.......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4677888888887754233336677888888888888774 34666777788888888887753221111223344
Q ss_pred ---CccEEeCCCCCCCCC--cchhhhhcCCCCCcEEEccCCCCCC
Q 048351 198 ---SLRYLDLSSCNLSKS--TDWLQEVDKIPSLKTLYLEQCDLQL 237 (850)
Q Consensus 198 ---~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~ 237 (850)
+|++|++++|+++.. ..++..+..+++|++|++++|.++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 577777777777642 1245566666666666666666543
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.2e-33 Score=315.65 Aligned_cols=364 Identities=18% Similarity=0.139 Sum_probs=210.9
Q ss_pred CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc----ccchhhhcCCCCcEEEccCCccccccc
Q 048351 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG----EIPKFFQNMFKLEGLSLRGNSLEGVIS 327 (850)
Q Consensus 252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~ 327 (850)
++|++||+++|+++......+ +..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~---------~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAEL---------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHH---------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred ccceehhhhhcccCchhHHHH---------HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 567777777777664322211 2345567777777777664 245556666777777777776654333
Q ss_pred cccccccccccCCCCCChhccCCC----CCCEEEccCCcCCCC----CchhHhhcCcCCCEEecccCcCcccCChhhhhh
Q 048351 328 EHFFSNFSYLKMGPHFPKWLQTQK----HFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSM 399 (850)
Q Consensus 328 ~~~~~~l~~~~l~~~~p~~l~~l~----~L~~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~ 399 (850)
..+ ...++ +|++|++++|.+++. ++..+.. +++|++|++++|.+++..+..+...
T Consensus 74 ~~l----------------~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 74 HCV----------------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp HHH----------------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS-CTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred HHH----------------HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc-CCceeEEECCCCcCchHHHHHHHHH
Confidence 221 11122 466666666665532 2333332 2455666666655554333322111
Q ss_pred ccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC----CCcccccCCCCC
Q 048351 400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK----LPDCWLQFNMLR 475 (850)
Q Consensus 400 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~ 475 (850)
. ....++|++|++++|.+++. ++..+..+++|+
T Consensus 137 l-------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 137 L-------------------------------------------LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp H-------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred H-------------------------------------------hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 0 00123566666666666543 244455567777
Q ss_pred EEEcCCCcccccCCCccc-----cccCccEEeccCCccccC----CchhhcCCCCcCeeccccccceeec----chhHHh
Q 048351 476 ILNLANNNFSGKIPNSCG-----YLQKMLTLSLHHNNFSGE----LPSLLKNFTHLRVVALEENSISGNI----PAWIGE 542 (850)
Q Consensus 476 ~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~i----p~~~~~ 542 (850)
+|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++++.- +..+..
T Consensus 174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence 777777776644333332 134677777777777653 4566666777777777777765322 122222
Q ss_pred cCCCCCEEEccCCccccc----cCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCccc
Q 048351 543 SLLNLVVLDLRSNRFYGK----IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTM 618 (850)
Q Consensus 543 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 618 (850)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------------------- 307 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-------------------------- 307 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH--------------------------
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH--------------------------
Confidence 366777777777777653 45556667777777777777764333222110
Q ss_pred CccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccCCCccccc----
Q 048351 619 LPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ---- 690 (850)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~---- 690 (850)
.....+.|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+..
T Consensus 308 --------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 308 --------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp --------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred --------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 000112447777777777765 4555666677777777777777654444443
Q ss_pred -cCCCCeeeCCCCcCcc----cCcccccCCCCCCEEEcCCCcCcc
Q 048351 691 -LQSLDFLDLSRNQFSG----GIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 691 -l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
.++|++|+|++|++++ .+|..+..+++|++||+++|++++
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 5677777777777775 667777777777777777777764
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-29 Score=273.67 Aligned_cols=264 Identities=19% Similarity=0.193 Sum_probs=165.5
Q ss_pred CcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEc
Q 048351 403 ESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL 479 (850)
Q Consensus 403 ~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 479 (850)
.++.|++++|.+++..+.. +++|++|++++|.+++..+... ..+++|++|++++|.++ .+|..+. ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 3444444444444433321 3445555555555544333222 13466777777777776 4444333 66777777
Q ss_pred CCCcccccCCCccccccCccEEeccCCccc--cCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcc
Q 048351 480 ANNNFSGKIPNSCGYLQKMLTLSLHHNNFS--GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF 557 (850)
Q Consensus 480 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 557 (850)
++|.+++..+..+..+++|++|++++|.++ +..|..+..+ +|++|++++|+++ .+|..+. ++|++|++++|.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcC
Confidence 777777555555677777777777777774 3556666666 7777777777776 4665442 5677777777777
Q ss_pred ccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccc
Q 048351 558 YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY 637 (850)
Q Consensus 558 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (850)
++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------------ 243 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL------------------------------------------ 243 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC------------------------------------------
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC------------------------------------------
Confidence 76666677777777777777777776555555444443
Q ss_pred ccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcccccc------CCCCeeeCCCCcCc--ccCc
Q 048351 638 EYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQL------QSLDFLDLSRNQFS--GGIP 709 (850)
Q Consensus 638 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l------~~L~~L~Ls~N~l~--~~~p 709 (850)
+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..|... ..|+.|++++|.+. +..|
T Consensus 244 ---------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 244 ---------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp ---------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred ---------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 67777777777 666677777777777777777776666655543 55777777777776 5666
Q ss_pred ccccCCCCCCEEEcCCCc
Q 048351 710 SSLSQVNRLSVMDLSHNN 727 (850)
Q Consensus 710 ~~l~~l~~L~~L~ls~N~ 727 (850)
..|..++.|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 777777777777777764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.5e-29 Score=267.74 Aligned_cols=250 Identities=22% Similarity=0.279 Sum_probs=164.1
Q ss_pred cccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCcccccccccccc
Q 048351 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS 332 (850)
Q Consensus 253 ~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 332 (850)
+++.++++++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..
T Consensus 34 ~l~~l~~~~~~l~~-----------ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--- 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-----------VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--- 97 (332)
T ss_dssp ETTEEECCSSCCSS-----------CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---
T ss_pred cCCEEECCCCCccc-----------cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---
Confidence 56777777776653 343332 46777777777777666667777777777777777776554432
Q ss_pred ccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCC
Q 048351 333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSN 412 (850)
Q Consensus 333 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N 412 (850)
+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+ .
T Consensus 98 --------------~~~l~~L~~L~L~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~~-~-------------- 144 (332)
T 2ft3_A 98 --------------FSPLRKLQKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRKVPKGVF-S-------------- 144 (332)
T ss_dssp --------------STTCTTCCEEECCSSCCCS-CCSSCC---TTCCEEECCSSCCCCCCSGGG-S--------------
T ss_pred --------------hhCcCCCCEEECCCCcCCc-cCcccc---ccCCEEECCCCccCccCHhHh-C--------------
Confidence 5666666666666666653 332221 356666666666554333323 1
Q ss_pred cCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCC--CCCCcccccCCCCCEEEcCCCcccccCCC
Q 048351 413 HLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS--GKLPDCWLQFNMLRILNLANNNFSGKIPN 490 (850)
Q Consensus 413 ~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 490 (850)
.+++|++|++++|.++ +..|..+..+ +|++|++++|.+++ +|.
T Consensus 145 ---------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~ 189 (332)
T 2ft3_A 145 ---------------------------------GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK 189 (332)
T ss_dssp ---------------------------------SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS
T ss_pred ---------------------------------CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc
Confidence 2256666777777664 2556666666 77777777777774 454
Q ss_pred ccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCC
Q 048351 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLAD 570 (850)
Q Consensus 491 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 570 (850)
.+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|+++ .+|..+..+++
T Consensus 190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 443 6777888888888776667777788888888888888744444444 6788888888888887 66777778888
Q ss_pred cceeecccccCcccCCcccc
Q 048351 571 IQILDLSLNNISGNIPKCFN 590 (850)
Q Consensus 571 L~~L~Ls~N~l~~~~p~~~~ 590 (850)
|++|++++|++++..+..|.
T Consensus 266 L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSS
T ss_pred CCEEECCCCCCCccChhHcc
Confidence 88888888888765555443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.8e-29 Score=269.50 Aligned_cols=224 Identities=19% Similarity=0.226 Sum_probs=138.3
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++++|++++..+..+.++++|++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 356666666666666666666666666666666666666 3444433 5666666666666665556666666666666
Q ss_pred ccccccee--ecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351 527 LEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS 604 (850)
Q Consensus 527 L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 604 (850)
+++|.+.. ..+..+. .+++|++|++++|.++. +|..+. ++|++|++++|++++..|..+..+++|
T Consensus 152 l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 218 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL--------- 218 (330)
T ss_dssp CCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC---------
T ss_pred CCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC---------
Confidence 66666642 3333333 56666677776666663 444332 566667777766666555555544444
Q ss_pred ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351 605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 684 (850)
+.|+|++|++++..+..+..+++|+.|+|++|+++ .+
T Consensus 219 ------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 219 ------------------------------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp ------------------------------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred ------------------------------------------CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 56666666666665656666666666666666666 45
Q ss_pred CccccccCCCCeeeCCCCcCcccCcccccCC------CCCCEEEcCCCcCc
Q 048351 685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV------NRLSVMDLSHNNLS 729 (850)
Q Consensus 685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~ls~N~l~ 729 (850)
|..+..+++|++|++++|++++..+..|... +.|+.+++++|++.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 6666666666666666666666555555432 45666666666664
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.7e-28 Score=265.15 Aligned_cols=224 Identities=23% Similarity=0.309 Sum_probs=139.5
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 45666666666666555556666666666666666666665666666666666666666666 3444332 56666666
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCcccc--ccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYG--KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 605 (850)
++|+++ .++...+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+.
T Consensus 129 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--------------- 191 (330)
T 1xku_A 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--------------- 191 (330)
T ss_dssp CSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC---------------
T ss_pred CCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc---------------
Confidence 666666 3443333356666666666666642 455566666666666666666652 232211
Q ss_pred cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
+.|+.|++++|++++..|..+..+++|+.|+|++|++++..+
T Consensus 192 --------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 192 --------------------------------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp --------------------------------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred --------------------------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 123666666666666666666666666666666666666666
Q ss_pred ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 66666666666666666666 556666666666666666666664
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.2e-31 Score=312.37 Aligned_cols=412 Identities=14% Similarity=0.035 Sum_probs=183.9
Q ss_pred cccccCCCCCCEEeCCCCCC---CCCCCCcccC------------CCCCCCEEeCCCCCCCCCCCcccCC-CC-CCcEEE
Q 048351 116 NPALLKLHYLRHLDLSFNNF---SGSQIPMFIG------------SLSKLEYLDLFAASFSGPIPPLLGN-LS-RLQYLS 178 (850)
Q Consensus 116 ~~~l~~l~~L~~L~Ls~n~l---~~~~~p~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~ 178 (850)
+..+.++++|++|+|+++.. .+. +|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 33455667777777766432 111 332222 4566666666666655544444443 22 366666
Q ss_pred ccCCCCCCCCCc-cccccCCCccEEeCCCCCCCCCcc--hhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCccc
Q 048351 179 LGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKSTD--WLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE 255 (850)
Q Consensus 179 Ls~N~l~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 255 (850)
+++|........ ....++++|++|+|++|.+++... +......+++|++|++++|.+++.........+.++ ++|+
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~ 223 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLV 223 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCC
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCc
Confidence 665541100001 112245555555555555443210 122233445555555555554422110000111122 4455
Q ss_pred EEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCC---cccchhhhcCCCCcEEEccCCcccccccccccc
Q 048351 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD---GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS 332 (850)
Q Consensus 256 ~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 332 (850)
+|++++|.+.+ ++. .+..+++|++|+++.+... +..+..+..+++|+.|+++++...
T Consensus 224 ~L~L~~~~~~~-l~~----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------- 283 (592)
T 3ogk_B 224 SVKVGDFEILE-LVG----------FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN--------- 283 (592)
T ss_dssp EEECSSCBGGG-GHH----------HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT---------
T ss_pred EEeccCccHHH-HHH----------HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh---------
Confidence 55555544433 111 1223344444444432111 112223334444444444432111
Q ss_pred ccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccC-
Q 048351 333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS- 411 (850)
Q Consensus 333 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~- 411 (850)
.+|..+..+++|+.|++++|.+++.....+...+++|++|+++ +.+.......+...+ ++|+.|++++
T Consensus 284 ---------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~-~~L~~L~L~~g 352 (592)
T 3ogk_B 284 ---------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC-KQLKRLRIERG 352 (592)
T ss_dssp ---------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC-TTCCEEEEECC
T ss_pred ---------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC-CCCCEEEeecC
Confidence 2223344445555555555554433322222333455555555 222222111111122 4455555552
Q ss_pred ----------CcCcccCC----CCCCCCcEEEccCCcCcCccccccccCCCCccEEEcc----CCCCCCC-----CCccc
Q 048351 412 ----------NHLEGPSP----SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLS----SNLLSGK-----LPDCW 468 (850)
Q Consensus 412 ----------N~l~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~p~~~ 468 (850)
|.+++... ..+++|++|+++.|.+++.........+++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 33332110 1134555555555555443222111124566666664 4555542 22234
Q ss_pred ccCCCCCEEEcCCCc--ccccCCCccc-cccCccEEeccCCcccc-CCchhhcCCCCcCeeccccccceeecchhHHhcC
Q 048351 469 LQFNMLRILNLANNN--FSGKIPNSCG-YLQKMLTLSLHHNNFSG-ELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544 (850)
Q Consensus 469 ~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l 544 (850)
.++++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++.....+...+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 556667777775432 4443333332 25667777777776654 3344456666777777777766544333333356
Q ss_pred CCCCEEEccCCccccc
Q 048351 545 LNLVVLDLRSNRFYGK 560 (850)
Q Consensus 545 ~~L~~L~L~~N~l~~~ 560 (850)
++|++|++++|++++.
T Consensus 513 ~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 513 PSLRYLWVQGYRASMT 528 (592)
T ss_dssp SSCCEEEEESCBCCTT
T ss_pred CccCeeECcCCcCCHH
Confidence 6777777777776544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.2e-28 Score=260.10 Aligned_cols=233 Identities=22% Similarity=0.252 Sum_probs=199.9
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc--CCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK--IPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 525 (850)
++|++|++++|.+++..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5788899999998865556688899999999999988733 3566777899999999999988 567778899999999
Q ss_pred ccccccceeecch-hHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcc-cCCccccCcccCccccccCc
Q 048351 526 ALEENSISGNIPA-WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG-NIPKCFNNFTAMTQERSYNS 603 (850)
Q Consensus 526 ~L~~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~ 603 (850)
++++|+++ .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|
T Consensus 107 ~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------- 177 (306)
T 2z66_A 107 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------- 177 (306)
T ss_dssp ECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred ECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence 99999998 4443 333478999999999999998888889999999999999999986 567666665555
Q ss_pred cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC
Q 048351 604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY 683 (850)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 683 (850)
++|+|++|++++..|..+..+++|+.|+|++|++++.
T Consensus 178 -------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 178 -------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp -------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred -------------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 8999999999988899999999999999999999988
Q ss_pred CCccccccCCCCeeeCCCCcCcccCcccccCCC-CCCEEEcCCCcCcccCC
Q 048351 684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN-RLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP 733 (850)
.+..+..+++|+.|||++|++++.+|..+..++ +|++|++++|+++|..+
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 888899999999999999999999999999985 99999999999987643
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.4e-28 Score=262.87 Aligned_cols=226 Identities=19% Similarity=0.268 Sum_probs=200.7
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 67899999999998 77888888999999999999998 88888999999999999999998 78888999999999999
Q ss_pred ccccceeecchhHH--------hcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccc
Q 048351 528 EENSISGNIPAWIG--------ESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER 599 (850)
Q Consensus 528 ~~N~l~~~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 599 (850)
++|++.+.+|..+. .++++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---- 231 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---- 231 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC----
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC----
Confidence 99888888888764 13889999999999998 788889999999999999999985 55555555444
Q ss_pred ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCc
Q 048351 600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN 679 (850)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 679 (850)
+.|+|++|++.+.+|..++.+++|+.|+|++|.
T Consensus 232 -----------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 232 -----------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp -----------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred -----------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 889999999999999999999999999999999
Q ss_pred CccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351 680 LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 680 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 729 (850)
+.+.+|..++++++|++|+|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999987665
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=269.08 Aligned_cols=276 Identities=19% Similarity=0.149 Sum_probs=173.5
Q ss_pred EEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccc
Q 048351 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS 485 (850)
Q Consensus 406 ~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 485 (850)
..+++++.++..+....+++++|++++|.+++..+.. ...+++|++|++++|.+++..|..|.++++|++|++++|+++
T Consensus 35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCcccccccccccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 3555555555544444445555555555555433211 113466666666666666655666666666666666666666
Q ss_pred ccCCCccccccCccEEeccCCccccCCc-hhhcCCCCcCeecccccc-ceeecchhHHhcCCCCCEEEccCCccccccCc
Q 048351 486 GKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENS-ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF 563 (850)
Q Consensus 486 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~-l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~ 563 (850)
+..+..++.+++|++|++++|++++..+ ..+..+++|++|++++|. +. .++...+..+++|++|++++|.+++..|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 4433346666666666666666663322 356666666666666663 44 33332222566666666666666666666
Q ss_pred CcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccc
Q 048351 564 QLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTL 643 (850)
Q Consensus 564 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 643 (850)
.+..+++|++|++++|+++. +|.. +...+
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~-~~~~--------------------------------------------------~~~~~ 221 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHIL-LLEI--------------------------------------------------FVDVT 221 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTT-HHHH--------------------------------------------------HHHHT
T ss_pred HHhccccCCeecCCCCcccc-chhh--------------------------------------------------hhhhc
Confidence 66666666666666666542 2211 11234
Q ss_pred ccccEEEcCCCCCCCCChhhhh---ccccCCeEecCCCcCcc----CCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351 644 GLVKSVDLSSNKLGGEVPEEIM---DLVGLIGLNLSRNNLTG----YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716 (850)
Q Consensus 644 ~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (850)
+.|+.|++++|++++..+..+. ....++.++|+++.+++ .+|..+.++++|++||+++|+++...+..|..++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence 4558888899988876655543 35667888888888876 3677788899999999999999844434468899
Q ss_pred CCCEEEcCCCcCcccCCC
Q 048351 717 RLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 717 ~L~~L~ls~N~l~g~iP~ 734 (850)
+|++|++++|+++|.+|.
T Consensus 302 ~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred CCCEEEeeCCCccCcCCC
Confidence 999999999999887663
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.5e-28 Score=259.80 Aligned_cols=275 Identities=21% Similarity=0.242 Sum_probs=222.4
Q ss_pred EEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC--CCcccccCCCCCEEEcCCCc
Q 048351 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK--LPDCWLQFNMLRILNLANNN 483 (850)
Q Consensus 406 ~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~ 483 (850)
.++++++.++..+...++++++|++++|.++...+. .+..+++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 466666666655555566778888888887754332 223568999999999998733 36677789999999999999
Q ss_pred ccccCCCccccccCccEEeccCCccccCCc-hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccc-cc
Q 048351 484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG-KI 561 (850)
Q Consensus 484 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~ 561 (850)
++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++ .+
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEE
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccc
Confidence 98 467778899999999999999986655 6789999999999999999866666555 69999999999999987 68
Q ss_pred CcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccc
Q 048351 562 PFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN 641 (850)
Q Consensus 562 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (850)
|..+..+++|++|++++|++++..|..+..+++|
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------------- 201 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------------------------------------- 201 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC----------------------------------------------
Confidence 8899999999999999999998878777766655
Q ss_pred ccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcccccc-CCCCeeeCCCCcCcccCcc--cccCCCCC
Q 048351 642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQL-QSLDFLDLSRNQFSGGIPS--SLSQVNRL 718 (850)
Q Consensus 642 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~~p~--~l~~l~~L 718 (850)
+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|++|+|++|.+++..+. ....+...
T Consensus 202 -----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 202 -----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp -----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred -----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence 899999999998888889999999999999999999999999998 4999999999999875331 12223334
Q ss_pred CEEEcCCCcCcccCCC
Q 048351 719 SVMDLSHNNLSGKIPT 734 (850)
Q Consensus 719 ~~L~ls~N~l~g~iP~ 734 (850)
+.+.+..+.+.+..|.
T Consensus 277 ~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 277 RQLLVEVERMECATPS 292 (306)
T ss_dssp GGGBSCGGGCBEEESG
T ss_pred hhhhccccccccCCch
Confidence 4555666777776664
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-27 Score=267.30 Aligned_cols=231 Identities=21% Similarity=0.233 Sum_probs=202.1
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
+++++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999888889999999999999999999888889999999999999999999777778999999999999
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCC-ccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 606 (850)
++|+++ .+|...+..+++|++|++++| .+....+..|..+++|++|++++|++++. | .+..+
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l-------------- 217 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL-------------- 217 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC--------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccc--------------
Confidence 999998 677665567999999999995 55544455688999999999999999843 3 23222
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 686 (850)
++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus 218 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 218 -------------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp -------------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred -------------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 3448999999999999999999999999999999999999999
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccC
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKI 732 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 732 (850)
.|.++++|+.|||++|++++..+..|..+++|++|++++|++.+..
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 9999999999999999999888888999999999999999988653
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=263.54 Aligned_cols=277 Identities=18% Similarity=0.172 Sum_probs=232.0
Q ss_pred CCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEe
Q 048351 423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLS 502 (850)
Q Consensus 423 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 502 (850)
+.....+.+++.++....... ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334458888998886544322 5899999999999977777899999999999999999988888999999999999
Q ss_pred ccCCccccCCchhhcCCCCcCeeccccccceeecch-hHHhcCCCCCEEEccCC-ccccccCcCcCCCCCcceeeccccc
Q 048351 503 LHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPA-WIGESLLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLSLNN 580 (850)
Q Consensus 503 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~ 580 (850)
+++|++++..+..+.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 9999999766666999999999999999998 6776 44447999999999999 5777777889999999999999999
Q ss_pred CcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCC
Q 048351 581 ISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEV 660 (850)
Q Consensus 581 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 660 (850)
+++..|..+.++++| ++|++++|+++...
T Consensus 186 l~~~~~~~l~~l~~L---------------------------------------------------~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 186 LQSYEPKSLKSIQNV---------------------------------------------------SHLILHMKQHILLL 214 (353)
T ss_dssp CCEECTTTTTTCSEE---------------------------------------------------EEEEEECSCSTTHH
T ss_pred cCccCHHHHhccccC---------------------------------------------------CeecCCCCccccch
Confidence 998888877666555 88999999997544
Q ss_pred hhhhhccccCCeEecCCCcCccCCCcccc---ccCCCCeeeCCCCcCcc----cCcccccCCCCCCEEEcCCCcCcccCC
Q 048351 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIG---QLQSLDFLDLSRNQFSG----GIPSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 661 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
+..+..+++|+.|++++|++++..+..+. ..+.++.++|++|.+++ .+|..+..+++|++||+++|+++ .+|
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~ 293 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVP 293 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCC
T ss_pred hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccC
Confidence 44556789999999999999987665544 35778899999998886 47888999999999999999999 677
Q ss_pred CC--CcCCCcCccccCCCCCCCCCC
Q 048351 734 TG--TQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 734 ~~--~~~~~~~~~~~~gN~~lc~~~ 756 (850)
.. ..+..+....+.+||..|+|+
T Consensus 294 ~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 64 456777778899999999875
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=264.61 Aligned_cols=230 Identities=22% Similarity=0.263 Sum_probs=196.1
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57888888888888777888889999999999999998777788888999999999999998766778889999999999
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCC-ccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 606 (850)
++|+++ .+|...+..+++|++|++++| .+....+..|..+++|++|++++|+++ .+|. +..
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~--------------- 205 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP--------------- 205 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT---------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC---------------
Confidence 999998 666655557899999999985 444444457888999999999999987 3332 222
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 686 (850)
+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+.
T Consensus 206 ------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 206 ------------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp ------------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ------------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 23448999999999998899999999999999999999999999
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
.|.++++|+.|||++|++++..+..|..+++|++|++++|++.+.
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 999999999999999999988888899999999999999999864
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-27 Score=253.23 Aligned_cols=228 Identities=20% Similarity=0.154 Sum_probs=180.8
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccc
Q 048351 451 VYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530 (850)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 530 (850)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 445433 457888888888888766677888888888888888888777778888888888888888
Q ss_pred c-ceeec-chhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351 531 S-ISGNI-PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608 (850)
Q Consensus 531 ~-l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 608 (850)
+ +. .+ |..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.++++|
T Consensus 91 ~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------- 155 (285)
T 1ozn_A 91 AQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------------- 155 (285)
T ss_dssp TTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-------------
Confidence 6 65 45 44443 68888888888888887777788888888888888888886655556555544
Q ss_pred ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 688 (850)
+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+
T Consensus 156 --------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 156 --------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp --------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred --------------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 788888888887777778888899999999999988888888
Q ss_pred cccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351 689 GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 689 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
+++++|+.|++++|++++..+..+..+++|++|++++|++.+..+.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 8899999999999999987777888889999999999988876553
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=263.41 Aligned_cols=252 Identities=22% Similarity=0.246 Sum_probs=217.7
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 528 (850)
....++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888888 6676554 689999999999998888999999999999999999998888999999999999999
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCC-ccccCcccCccccccCccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP-KCFNNFTAMTQERSYNSSAIT 607 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~ 607 (850)
+|+++ .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|+..+.++ ..|.++++|
T Consensus 121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------ 187 (440)
T 3zyj_A 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL------------ 187 (440)
T ss_dssp SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC------------
T ss_pred CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc------------
Confidence 99998 6776555579999999999999998888889999999999999955443443 345554444
Q ss_pred cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcc
Q 048351 608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 687 (850)
++|+|++|+++ .+| .+..+++|+.|+|++|++++..|..
T Consensus 188 ---------------------------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 188 ---------------------------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp ---------------------------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTT
T ss_pred ---------------------------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhh
Confidence 89999999998 555 4889999999999999999999999
Q ss_pred ccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCCCCCCC
Q 048351 688 IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPELCGLPL 757 (850)
Q Consensus 688 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~~ 757 (850)
|.++++|+.|+|++|++++..|..|..+++|++||+++|++++..|.. ..+..+....+.+||+.|+|.+
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 999999999999999999999999999999999999999999654432 3456677778999999999853
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.9e-26 Score=260.38 Aligned_cols=250 Identities=21% Similarity=0.213 Sum_probs=216.9
Q ss_pred cCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCc
Q 048351 404 SPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483 (850)
Q Consensus 404 L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 483 (850)
...++.+++.++..+...++++++|++++|.+++..+.... .+++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34566666666665555567788888888888776544332 56899999999999998888999999999999999999
Q ss_pred ccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCc
Q 048351 484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF 563 (850)
Q Consensus 484 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~ 563 (850)
+++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|...+.++...+.++++|++|++++|++++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 99877778999999999999999999777778999999999999996555588887666899999999999999854 4
Q ss_pred CcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccc
Q 048351 564 QLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTL 643 (850)
Q Consensus 564 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 643 (850)
.+..+++|+.|+|++|++++..|..|.++++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------------------------------------ 244 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL------------------------------------------------ 244 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC------------------------------------------------
T ss_pred cccccccccEEECcCCcCcccCcccccCccCC------------------------------------------------
Confidence 58899999999999999998888888777665
Q ss_pred ccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351 644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 644 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 245 ---~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 245 ---KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ---CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ---CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8999999999999999999999999999999999988888899999999999999998743
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.3e-27 Score=247.23 Aligned_cols=235 Identities=20% Similarity=0.212 Sum_probs=175.7
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCc-cccCCchhhcCCCCcCeec
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-FSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~ 526 (850)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 567778888887776666777778888888888888877777778888888888888886 6665577788888888888
Q ss_pred cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606 (850)
Q Consensus 527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 606 (850)
+++|++++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----------- 179 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence 888888744444444 67888888888888887666667888888888888888876555555555444
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 686 (850)
+.|+|++|++++..|..+..+++|+.|++++|++++..+.
T Consensus 180 ----------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 180 ----------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ----------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 7788888888888788888888888888888888876666
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG 735 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 735 (850)
.+..+++|+.|++++|.+....+.. .-...++.++.+.|.+.+..|..
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 7888888888888888887654421 11123444557778888888754
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.5e-28 Score=286.40 Aligned_cols=238 Identities=12% Similarity=-0.004 Sum_probs=148.8
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCC-CccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP-NSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 525 (850)
+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 35677777776533 3556666677777777777777654332 234567777777777333333344445667777777
Q ss_pred cccc-----------ccceeecchhHHhcCCCCCEEEccCCccccccCcCcCC-CCCcceeecc----cccCcccCCccc
Q 048351 526 ALEE-----------NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH-LADIQILDLS----LNNISGNIPKCF 589 (850)
Q Consensus 526 ~L~~-----------N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~p~~~ 589 (850)
++++ |.+++.-...+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++...+.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~- 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN- 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-
Confidence 7772 45553323333335777777777777777665555544 6777777775 44554321000
Q ss_pred cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCC--CCCCCChhhhhc-
Q 048351 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSN--KLGGEVPEEIMD- 666 (850)
Q Consensus 590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~- 666 (850)
........+++|+.|+|+++ .+++..+..++.
T Consensus 427 ---------------------------------------------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 427 ---------------------------------------------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp ---------------------------------------------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred ---------------------------------------------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 00011233555688888754 366666666655
Q ss_pred cccCCeEecCCCcCccC-CCccccccCCCCeeeCCCCcCccc-CcccccCCCCCCEEEcCCCcCccc
Q 048351 667 LVGLIGLNLSRNNLTGY-ITPKIGQLQSLDFLDLSRNQFSGG-IPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 667 l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
+++|+.|+|++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|++|++++|++++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 78888888888888763 344557788888888888888755 344445688888888888887743
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.3e-27 Score=255.65 Aligned_cols=110 Identities=22% Similarity=0.184 Sum_probs=63.2
Q ss_pred CCccEEEccCCCCCCCCCccc--ccCCCCCEEEcCCCcccccCCCccccc-----cCccEEeccCCccccCCchhhcCCC
Q 048351 448 QNLVYLDLSSNLLSGKLPDCW--LQFNMLRILNLANNNFSGKIPNSCGYL-----QKMLTLSLHHNNFSGELPSLLKNFT 520 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~ 520 (850)
++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 566666666666666666554 5666666666666666655 5555555 5666666666666655556666666
Q ss_pred CcCeeccccccceeec--chhH-HhcCCCCCEEEccCCccc
Q 048351 521 HLRVVALEENSISGNI--PAWI-GESLLNLVVLDLRSNRFY 558 (850)
Q Consensus 521 ~L~~L~L~~N~l~~~i--p~~~-~~~l~~L~~L~L~~N~l~ 558 (850)
+|++|++++|++.+.+ |..+ +..+++|++|++++|+++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 6666666666655432 2121 113444444444444444
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.1e-28 Score=260.60 Aligned_cols=224 Identities=21% Similarity=0.236 Sum_probs=165.4
Q ss_pred ccEEEccCCCCC-CCCCcccc-------cCCCCCEEEcCCCcccccCCCcc--ccccCccEEeccCCccccCCchhhcCC
Q 048351 450 LVYLDLSSNLLS-GKLPDCWL-------QFNMLRILNLANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELPSLLKNF 519 (850)
Q Consensus 450 L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l 519 (850)
|+.|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 777777777773 34555554 67888888888888888777765 7788888888888888866 7767666
Q ss_pred -----CCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccccc--CcCc--CCCCCcceeecccccCccc--CCcc
Q 048351 520 -----THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI--PFQL--CHLADIQILDLSLNNISGN--IPKC 588 (850)
Q Consensus 520 -----~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--p~~l--~~l~~L~~L~Ls~N~l~~~--~p~~ 588 (850)
++|++|++++|++++..|..+. .+++|++|++++|++.+.+ |..+ ..+++|++|++++|++++. ++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 7888888888888754445554 6888888888888876652 2233 6778888888888887631 1110
Q ss_pred ccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh-hhhhcc
Q 048351 589 FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP-EEIMDL 667 (850)
Q Consensus 589 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l 667 (850)
....++.|+.|+|++|++++.+| ..+..+
T Consensus 223 --------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 223 --------------------------------------------------LAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp --------------------------------------------------HHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred --------------------------------------------------HHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 11223445888888888888775 456667
Q ss_pred ccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351 668 VGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 668 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
++|+.|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888888 6777766 7888888888888866 55 8888888888888888875
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.5e-25 Score=255.28 Aligned_cols=242 Identities=24% Similarity=0.274 Sum_probs=147.9
Q ss_pred CCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCC
Q 048351 402 LESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLAN 481 (850)
Q Consensus 402 ~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 481 (850)
++++.|++++|.++.. |..+++|++|++++|++++... .+++|++|++++|.+++ +|. .+++|+.|++++
T Consensus 61 ~~L~~L~L~~N~l~~l-p~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCC-CCCCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCC-CCcCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCC
Confidence 3444444444444432 2244555555555555553222 23566777777776664 333 456677777777
Q ss_pred CcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccccc
Q 048351 482 NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI 561 (850)
Q Consensus 482 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 561 (850)
|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|+++ .+| ..+++|+.|++++|.+++ +
T Consensus 131 N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 131 NQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-C
Confidence 77663 4432 3667777777777763 333 2456777777777776 466 135677777777777764 3
Q ss_pred CcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccc
Q 048351 562 PFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN 641 (850)
Q Consensus 562 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (850)
|.. +++|+.|++++|.++. +|..+
T Consensus 197 ~~~---~~~L~~L~L~~N~l~~-l~~~~---------------------------------------------------- 220 (622)
T 3g06_A 197 PTL---PSELYKLWAYNNRLTS-LPALP---------------------------------------------------- 220 (622)
T ss_dssp CCC---CTTCCEEECCSSCCSS-CCCCC----------------------------------------------------
T ss_pred CCc---cchhhEEECcCCcccc-cCCCC----------------------------------------------------
Confidence 332 3567777777777762 23211
Q ss_pred ccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEE
Q 048351 642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVM 721 (850)
Q Consensus 642 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 721 (850)
++|+.|+|++|++++ +| ..+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|
T Consensus 221 --~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 --SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp --TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred --CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 123677777777774 44 345677777777777774 444 4567777777777777 567777777777777
Q ss_pred EcCCCcCcccCCC
Q 048351 722 DLSHNNLSGKIPT 734 (850)
Q Consensus 722 ~ls~N~l~g~iP~ 734 (850)
++++|+++|.+|.
T Consensus 290 ~L~~N~l~~~~~~ 302 (622)
T 3g06_A 290 NLEGNPLSERTLQ 302 (622)
T ss_dssp ECCSCCCCHHHHH
T ss_pred EecCCCCCCcCHH
Confidence 7777777776654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=262.09 Aligned_cols=220 Identities=23% Similarity=0.198 Sum_probs=188.9
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 589999999999998888899999999999999999997766 8899999999999999985433 389999999
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc-CcccCccccccCcccc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN-NFTAMTQERSYNSSAI 606 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~~ 606 (850)
++|.+++..+. .+++|++|++++|.+++..|..+..+++|++|+|++|.+++.+|..+. .++.
T Consensus 107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~------------ 170 (487)
T 3oja_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT------------ 170 (487)
T ss_dssp CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT------------
T ss_pred cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc------------
Confidence 99999854443 478999999999999999898999999999999999999987776654 3444
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 686 (850)
|+.|+|++|.+++..+ +..+++|+.|+|++|++++.+ +
T Consensus 171 ---------------------------------------L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~ 208 (487)
T 3oja_A 171 ---------------------------------------LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-P 208 (487)
T ss_dssp ---------------------------------------CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-G
T ss_pred ---------------------------------------ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-H
Confidence 4899999999987633 346899999999999999754 4
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc-ccCC
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS-GKIP 733 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~iP 733 (850)
.+..+++|+.|||++|++++ +|..+..+++|++|++++|++. +.+|
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 59999999999999999996 6778999999999999999998 4444
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.5e-24 Score=250.82 Aligned_cols=269 Identities=22% Similarity=0.328 Sum_probs=224.7
Q ss_pred CCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEc
Q 048351 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430 (850)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~L 430 (850)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+ .+|+.|++++|++++.. ..+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~~l-----~~L~~L~Ls~N~l~~lp-~~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALP-----PELRTLEVSGNQLTSLP-VLPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCCCC-----TTCCEEEECSCCCSCCC-CCCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCCcC-----CCCCEEEcCCCcCCcCC-CCCCCCCEEEC
Confidence 46899999999998 5666543 58999999999998 455533 89999999999998644 48899999999
Q ss_pred cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcccc
Q 048351 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG 510 (850)
Q Consensus 431 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 510 (850)
++|.+++... .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|++++
T Consensus 109 s~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 9999998544 34789999999999985 5543 4899999999999985 454 35789999999999995
Q ss_pred CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN 590 (850)
Q Consensus 511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 590 (850)
+| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|.
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~--- 238 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV--- 238 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---
T ss_pred -Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---
Confidence 66 55789999999999998 5775 3579999999999998 45543 4789999999999985 441
Q ss_pred CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccC
Q 048351 591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL 670 (850)
Q Consensus 591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 670 (850)
.++ +|+.|+|++|+|+ .+|. .+++|
T Consensus 239 ~l~---------------------------------------------------~L~~L~Ls~N~L~-~lp~---~~~~L 263 (622)
T 3g06_A 239 LPS---------------------------------------------------ELKELMVSGNRLT-SLPM---LPSGL 263 (622)
T ss_dssp CCT---------------------------------------------------TCCEEECCSSCCS-CCCC---CCTTC
T ss_pred CCC---------------------------------------------------cCcEEECCCCCCC-cCCc---ccccC
Confidence 222 3489999999999 4665 67899
Q ss_pred CeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351 671 IGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716 (850)
Q Consensus 671 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (850)
+.|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999999999 6799999999999999999999999999887765
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.8e-25 Score=229.98 Aligned_cols=228 Identities=21% Similarity=0.186 Sum_probs=183.9
Q ss_pred EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccc
Q 048351 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS 531 (850)
Q Consensus 452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 531 (850)
..+-.+..+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555555 4555442 468888888888887777678888888888888888887777788888888888888888
Q ss_pred ceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCccc-CCccccCcccCccccccCcccccccc
Q 048351 532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN-IPKCFNNFTAMTQERSYNSSAITFSY 610 (850)
Q Consensus 532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~ 610 (850)
+++..+..+. ++++|++|++++|.+++..+..+..+++|++|++++|++++. +|..+.++++|
T Consensus 88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------------- 151 (276)
T 2z62_A 88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------------- 151 (276)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence 8854444444 688999999999999877777788999999999999998863 46666655554
Q ss_pred ccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCC----eEecCCCcCccCCCc
Q 048351 611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLI----GLNLSRNNLTGYITP 686 (850)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~ip~ 686 (850)
+.|+|++|++++..+..+..+++|+ .|++++|++++..+.
T Consensus 152 ------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 152 ------------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp ------------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred ------------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc
Confidence 8899999999988888888888887 899999999976665
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG 735 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 735 (850)
.+.. .+|+.|+|++|++++..+..|..+++|++|++++|+++|..|.-
T Consensus 196 ~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 196 AFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 5554 58999999999999888888899999999999999999887754
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-26 Score=244.81 Aligned_cols=217 Identities=23% Similarity=0.193 Sum_probs=170.1
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 3678999999999988777888899999999999999887654 888899999999999887432 347899999
Q ss_pred cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc-CcccCccccccCccc
Q 048351 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN-NFTAMTQERSYNSSA 605 (850)
Q Consensus 527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~ 605 (850)
+++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+. .++
T Consensus 106 l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~------------ 169 (317)
T 3o53_A 106 AANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD------------ 169 (317)
T ss_dssp CCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT------------
T ss_pred CCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC------------
Confidence 999998844332 367899999999999888787888889999999999998876555442 333
Q ss_pred cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
.|++|+|++|++++. |. ...+++|+.|+|++|++++. |
T Consensus 170 ---------------------------------------~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~ 207 (317)
T 3o53_A 170 ---------------------------------------TLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-G 207 (317)
T ss_dssp ---------------------------------------TCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-C
T ss_pred ---------------------------------------cCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-h
Confidence 347888888888755 32 33478888888888888854 4
Q ss_pred ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 729 (850)
..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 45888888888888888888 46777888888888888888887
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.4e-28 Score=286.63 Aligned_cols=418 Identities=12% Similarity=0.053 Sum_probs=217.3
Q ss_pred cccCCCCCCEEeCCCCCCCC-C-CCCc------------ccCCCCCCCEEeCCCCCCCCCCCcccC-CCCCCcEEEccCC
Q 048351 118 ALLKLHYLRHLDLSFNNFSG-S-QIPM------------FIGSLSKLEYLDLFAASFSGPIPPLLG-NLSRLQYLSLGYN 182 (850)
Q Consensus 118 ~l~~l~~L~~L~Ls~n~l~~-~-~~p~------------~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N 182 (850)
.+.++++|++|+++++.... . ..|. ....+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 46678899999999875321 0 0121 123577888888888888776666664 6888888888887
Q ss_pred CCCCCC-CccccccCCCccEEeCCCCCCCCCc-c-hhhhhcCCCCCcEEEccCCCCCCCCCccccccc-cCCCCcccEEE
Q 048351 183 KLLRAG-NLDWISQLFSLRYLDLSSCNLSKST-D-WLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSH-LNSSPSLETLG 258 (850)
Q Consensus 183 ~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~-~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~L~~L~ 258 (850)
...... ....+.++++|++|++++|.+++.. . +......+++|++|++++|. . .........+ ..+ ++|++|+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~-~~L~~L~ 217 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRC-PNLKSLK 217 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHC-TTCCEEE
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhC-CCCcEEe
Confidence 321111 1122346788888888888766531 1 12222356677777777765 1 1110000111 122 6677777
Q ss_pred ccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCc-------CCcccchhhhcCCCCcEE-EccCCcccccccccc
Q 048351 259 LSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE-------LDGEIPKFFQNMFKLEGL-SLRGNSLEGVISEHF 330 (850)
Q Consensus 259 Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~~~~~ 330 (850)
+++|.-.+.++.. +..+++|++|+++.+. +.+ ++..+.++++|+.| .+.+....
T Consensus 218 L~~~~~~~~l~~~----------~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~------- 279 (594)
T 2p1m_B 218 LNRAVPLEKLATL----------LQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA------- 279 (594)
T ss_dssp CCTTSCHHHHHHH----------HHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-------
T ss_pred cCCCCcHHHHHHH----------HhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-------
Confidence 7766221112222 3345567777654432 222 33456666667666 23222111
Q ss_pred ccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEcc
Q 048351 331 FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDIS 410 (850)
Q Consensus 331 ~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~ 410 (850)
.+|..+..+++|+.|++++|.+++.....+...+++|++|++++| +.......+...+ ++|+.|++.
T Consensus 280 -----------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~-~~L~~L~L~ 346 (594)
T 2p1m_B 280 -----------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC-KDLRELRVF 346 (594)
T ss_dssp -----------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC-TTCCEEEEE
T ss_pred -----------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC-CCCCEEEEe
Confidence 123334456777777777777655444443444567777777776 3322222221222 556666663
Q ss_pred CCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccc-cCCCCCEEEcC--C----Cc
Q 048351 411 SNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWL-QFNMLRILNLA--N----NN 483 (850)
Q Consensus 411 ~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~ 483 (850)
.+.-.| ..+.+.+++.........+++|++|+++.|.+++..+..+. .+++|+.|+++ + |.
T Consensus 347 ~~~~~g------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 347 PSEPFV------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp CSCTTC------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred cCcccc------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 321000 00111222111000001235666666666666544333333 35666666666 2 33
Q ss_pred cccc-----CCCccccccCccEEeccCCccccCCchhhcC-CCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcc
Q 048351 484 FSGK-----IPNSCGYLQKMLTLSLHHNNFSGELPSLLKN-FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF 557 (850)
Q Consensus 484 l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 557 (850)
+++. ++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+...+++|++|++++|.+
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4311 111134556666666655 444433333433 666666666666665444444433566666666666666
Q ss_pred ccccCc-CcCCCCCcceeecccccCc
Q 048351 558 YGKIPF-QLCHLADIQILDLSLNNIS 582 (850)
Q Consensus 558 ~~~~p~-~l~~l~~L~~L~Ls~N~l~ 582 (850)
++.... ....+++|+.|++++|+++
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 443322 2334566666777666664
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.4e-26 Score=243.77 Aligned_cols=269 Identities=19% Similarity=0.184 Sum_probs=178.5
Q ss_pred CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccc
Q 048351 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFF 331 (850)
Q Consensus 252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 331 (850)
.+++..+++.+.+...... .+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~----------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 75 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALAS----------LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---- 75 (317)
T ss_dssp TEEEEESCCTTTHHHHHHH----------HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----
T ss_pred CceeEeeccccchhhhHHH----------HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----
Confidence 4566667776665432211 12345678888888888887777788888888888888888775432
Q ss_pred cccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccC
Q 048351 332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS 411 (850)
Q Consensus 332 ~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~ 411 (850)
+..+++|++|++++|.+++..+. ++|++|++++|.+++
T Consensus 76 ---------------~~~l~~L~~L~Ls~n~l~~l~~~------~~L~~L~l~~n~l~~--------------------- 113 (317)
T 3o53_A 76 ---------------LESLSTLRTLDLNNNYVQELLVG------PSIETLHAANNNISR--------------------- 113 (317)
T ss_dssp ---------------ETTCTTCCEEECCSSEEEEEEEC------TTCCEEECCSSCCSE---------------------
T ss_pred ---------------hhhcCCCCEEECcCCccccccCC------CCcCEEECCCCccCC---------------------
Confidence 45566677777777666542211 345555555555543
Q ss_pred CcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccc-cCCCCCEEEcCCCcccccCCC
Q 048351 412 NHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWL-QFNMLRILNLANNNFSGKIPN 490 (850)
Q Consensus 412 N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~ 490 (850)
..+..+++|++|++++|.+++..+.... .+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +.
T Consensus 114 -----~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~ 186 (317)
T 3o53_A 114 -----VSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (317)
T ss_dssp -----EEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred -----cCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc
Confidence 3333344555666666666554432221 346788888888888776666553 678888888888888755 22
Q ss_pred ccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc-cccCcCcCCCC
Q 048351 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY-GKIPFQLCHLA 569 (850)
Q Consensus 491 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~ 569 (850)
...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.+. +.+|..+..++
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp -CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred -ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 2347788888888888874 4445777888888888888887 6777665 5788888888888887 66677777788
Q ss_pred Ccceeecc-cccCcccCCc
Q 048351 570 DIQILDLS-LNNISGNIPK 587 (850)
Q Consensus 570 ~L~~L~Ls-~N~l~~~~p~ 587 (850)
.|+.++++ .+.++|..|.
T Consensus 263 ~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHHHSSSSC
T ss_pred cceEEECCCchhccCCchh
Confidence 88888887 4455555443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.8e-24 Score=221.85 Aligned_cols=205 Identities=21% Similarity=0.279 Sum_probs=142.3
Q ss_pred CCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR 553 (850)
Q Consensus 474 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 553 (850)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|+++ .+|..++..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 344444444444 2333222 34555555555555444445555555555555555555 4555444456666666666
Q ss_pred CCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEec
Q 048351 554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK 633 (850)
Q Consensus 554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (850)
+|.+++..+..+..+++|++|++++|++++..+..|.++++|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------- 135 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------------------------------- 135 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence 666665555566677777777777777776665555555444
Q ss_pred CcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccccc
Q 048351 634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713 (850)
Q Consensus 634 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 713 (850)
++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.
T Consensus 136 -------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 136 -------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 7788888888877667788889999999999999987777889999999999999999987777889
Q ss_pred CCCCCCEEEcCCCcCcccCC
Q 048351 714 QVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 714 ~l~~L~~L~ls~N~l~g~iP 733 (850)
.+++|++|++++|++.+..+
T Consensus 203 ~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCTTCCEEECCSSCBCCSSS
T ss_pred cccCCCEEEecCCCeeCCCc
Confidence 99999999999999987654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.4e-25 Score=250.49 Aligned_cols=221 Identities=19% Similarity=0.117 Sum_probs=190.4
Q ss_pred cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351 470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV 549 (850)
Q Consensus 470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~ 549 (850)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.++ .+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence 34489999999999998888899999999999999999997666 899999999999999998 5552 489999
Q ss_pred EEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351 550 LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629 (850)
Q Consensus 550 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (850)
|++++|.+++..+. .+++|+.|++++|.+++..|..+.++++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------- 146 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV---------------------------------- 146 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----------------------------------
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----------------------------------
Confidence 99999999987664 35789999999999998878777665554
Q ss_pred EEecCcccccccccccccEEEcCCCCCCCCChhhhh-ccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccC
Q 048351 630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM-DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGI 708 (850)
Q Consensus 630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 708 (850)
+.|+|++|++++.+|..+. .+++|+.|+|++|.+++.. .+..+++|+.|+|++|++++.+
T Consensus 147 -----------------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 147 -----------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp -----------------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC
T ss_pred -----------------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCC
Confidence 8999999999999999887 7999999999999999873 3456999999999999999765
Q ss_pred cccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCC
Q 048351 709 PSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGL 755 (850)
Q Consensus 709 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~ 755 (850)
|. +..+++|++||+++|++++..+....+..+....+.||+..|++
T Consensus 208 ~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 208 PE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp GG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred Hh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 54 89999999999999999974333345566777789999999864
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.4e-26 Score=269.56 Aligned_cols=389 Identities=14% Similarity=0.113 Sum_probs=212.3
Q ss_pred CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCC-cCCcc-cchhhhcCCCCcEEEccCCccccccccc
Q 048351 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN-ELDGE-IPKFFQNMFKLEGLSLRGNSLEGVISEH 329 (850)
Q Consensus 252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 329 (850)
++|++|++++|.+++..+..+. ..+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~---------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIA---------KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHH---------HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHH---------HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 6788888888877765444321 13567888888887 44432 4445557888888888888776543321
Q ss_pred cccccccccCCCCCChhccCCCCCCEEEccCCc--CCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEE
Q 048351 330 FFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG--ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407 (850)
Q Consensus 330 ~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L 407 (850)
++.....+++|+.|++++|. +.......+...+++|++|++++|.-.+.++..+ ... ++++.|
T Consensus 176 -------------l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~-~~L~~L 240 (594)
T 2p1m_B 176 -------------LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRA-PQLEEL 240 (594)
T ss_dssp -------------GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HHC-TTCSEE
T ss_pred -------------HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hcC-CcceEc
Confidence 12223466788888888876 2211122222334678888888773322355444 232 566666
Q ss_pred EccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEE-EccCCCCCCCCCcccccCCCCCEEEcCCCcccc
Q 048351 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYL-DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486 (850)
Q Consensus 408 ~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 486 (850)
+++.+.. +++.+.+.+..+.. ..+++|+.| .+.+... +.++..+..+++|+.|++++|.+++
T Consensus 241 ~l~~~~~--------------~~~~~~~~~l~~~l--~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 241 GTGGYTA--------------EVRPDVYSGLSVAL--SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp ECSBCCC--------------CCCHHHHHHHHHHH--HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred ccccccC--------------ccchhhHHHHHHHH--hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCH
Confidence 6544321 01112222211111 134566666 3332221 2334444456677777777776554
Q ss_pred cCC-CccccccCccEEeccCCccc-cCCchhhcCCCCcCeecc---------ccccceeecchhHHhcCCCCCEEEccCC
Q 048351 487 KIP-NSCGYLQKMLTLSLHHNNFS-GELPSLLKNFTHLRVVAL---------EENSISGNIPAWIGESLLNLVVLDLRSN 555 (850)
Q Consensus 487 ~~p-~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L---------~~N~l~~~ip~~~~~~l~~L~~L~L~~N 555 (850)
... ..+..+++|++|++++| +. ..++.....+++|++|++ +.+.+++.....+...+++|++|+++.|
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 322 12345667777777766 33 222333334677777766 2344443333333334677777777777
Q ss_pred ccccccCcCcC-CCCCcceeeccc------ccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEE
Q 048351 556 RFYGKIPFQLC-HLADIQILDLSL------NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628 (850)
Q Consensus 556 ~l~~~~p~~l~-~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (850)
.+++..+..+. .+++|+.|+++. |.+++...+.
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~---------------------------------------- 422 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI---------------------------------------- 422 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH----------------------------------------
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh----------------------------------------
Confidence 77655444443 466777777772 2332110000
Q ss_pred EEEecCcccccccccccccEEEcCCCCCCCCChhhhhc-cccCCeEecCCCcCccCCCccc-cccCCCCeeeCCCCcCcc
Q 048351 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 629 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~ 706 (850)
........++.|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus 423 ------~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 423 ------GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp ------HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred ------HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 0000112344557777766 566555555555 6777777777777765544444 556777777777777755
Q ss_pred cCcc-cccCCCCCCEEEcCCCcCc
Q 048351 707 GIPS-SLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 707 ~~p~-~l~~l~~L~~L~ls~N~l~ 729 (850)
..+. ....+++|++|++++|+++
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4443 2334667777777777664
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=220.59 Aligned_cols=226 Identities=23% Similarity=0.229 Sum_probs=190.7
Q ss_pred CEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccC
Q 048351 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRS 554 (850)
Q Consensus 475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~ 554 (850)
...+..+..+. .+|..+. ++|++|++++|++++..+..|.++++|++|++++|+++ .++...+..+++|++|++++
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred ceEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 35667777776 5676553 68999999999999877779999999999999999998 55544344799999999999
Q ss_pred CccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecC
Q 048351 555 NRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKG 634 (850)
Q Consensus 555 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (850)
|.+++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------- 126 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL--------------------------------------- 126 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC---------------------------------------
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC---------------------------------------
Confidence 99998888999999999999999999987666566555554
Q ss_pred cccccccccccccEEEcCCCCCCCC-ChhhhhccccCCeEecCCCcCccCCCccccccCCCC----eeeCCCCcCcccCc
Q 048351 635 SEYEYKNTLGLVKSVDLSSNKLGGE-VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD----FLDLSRNQFSGGIP 709 (850)
Q Consensus 635 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~p 709 (850)
++|++++|++++. +|..++.+++|+.|+|++|++++..+..+..+++|+ .|++++|++++..+
T Consensus 127 ------------~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 127 ------------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp ------------CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred ------------CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 8999999999874 699999999999999999999998888898888888 89999999998777
Q ss_pred ccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCCCCCC
Q 048351 710 SSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 710 ~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~ 756 (850)
..+.. .+|++|++++|++++..|.. ..+..+....+.+||+.|+|+
T Consensus 195 ~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 195 GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66655 48999999999999654432 456667777899999999986
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.4e-23 Score=219.52 Aligned_cols=205 Identities=21% Similarity=0.232 Sum_probs=168.1
Q ss_pred cccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCC
Q 048351 468 WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNL 547 (850)
Q Consensus 468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L 547 (850)
+.++++++.+++++|.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 556777778888887777 4555443 57888888888888777778888888888888888887 45543 268889
Q ss_pred CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeE
Q 048351 548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627 (850)
Q Consensus 548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (850)
++|++++|+++ .+|..+..+++|++|++++|++++..|..|.++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 99999999987 677788889999999999999987766777666655
Q ss_pred EEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 628 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .
T Consensus 127 -------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 127 -------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp -------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred -------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 88999999999888888889999999999999999777777888999999999999998 6
Q ss_pred CcccccCCCCCCEEEcCCCcCccc
Q 048351 708 IPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 708 ~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
+|..+..+.+|+++++++|++.+.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCeEEeCCCCccCc
Confidence 788888888999999999999764
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.8e-23 Score=214.25 Aligned_cols=205 Identities=23% Similarity=0.294 Sum_probs=171.4
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 528 (850)
..+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5678888888888 4565443 578889999998887766788888899999999998886666667888999999999
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 608 (850)
+|+++ .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------- 159 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------- 159 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-------------
Confidence 99988 5666555578999999999999998888888999999999999999986665556555554
Q ss_pred ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 688 (850)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|
T Consensus 160 --------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 160 --------------------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp --------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 889999999998888889999999999999999998777789
Q ss_pred cccCCCCeeeCCCCcCcccC
Q 048351 689 GQLQSLDFLDLSRNQFSGGI 708 (850)
Q Consensus 689 ~~l~~L~~L~Ls~N~l~~~~ 708 (850)
..+++|+.|+|++|.+....
T Consensus 202 ~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTCTTCCEEECCSSCBCCSS
T ss_pred ccccCCCEEEecCCCeeCCC
Confidence 99999999999999987553
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.4e-24 Score=222.81 Aligned_cols=222 Identities=21% Similarity=0.266 Sum_probs=176.2
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 528 (850)
++..+++.++.+.+.. ....+++|+.|++++|.++. + ..+..+++|++|++++|++++ + ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECC
Confidence 4555666666665432 35667888888888888763 2 357778888888888888875 3 367788888888888
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 608 (850)
+|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 88888 4554443468889999999998887777778888999999999999887666666655555
Q ss_pred ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 688 (850)
+.|++++|++++..+..++.+++|+.|++++|++++..|..+
T Consensus 160 --------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 160 --------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 889999999998888888899999999999999998888888
Q ss_pred cccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351 689 GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG 735 (850)
Q Consensus 689 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 735 (850)
+.+++|+.|++++|.+.+.. +.|++++++.|.++|.+|..
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred hCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 99999999999999988654 46888999999999999864
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.5e-23 Score=219.41 Aligned_cols=207 Identities=20% Similarity=0.219 Sum_probs=178.3
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3789999999998873 33 588899999999999999863 4788899999999999999988888889999999999
Q ss_pred cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606 (850)
Q Consensus 527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 606 (850)
+++|+++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 183 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL----------- 183 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence 9999998 5555544479999999999999998888788999999999999999997777666666555
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 686 (850)
+.|++++|++++..|..++.+++|+.|+|++|.+.+.
T Consensus 184 ----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 220 (272)
T 3rfs_A 184 ----------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 220 (272)
T ss_dssp ----------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---
T ss_pred ----------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---
Confidence 8999999999998888899999999999999999865
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (850)
+++|+.|+++.|+++|.+|..++.+.
T Consensus 221 ----~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 ----CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ----TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ----CcHHHHHHHHHHhCCCcccCcccccC
Confidence 45799999999999999999887654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.5e-23 Score=215.76 Aligned_cols=207 Identities=23% Similarity=0.251 Sum_probs=176.9
Q ss_pred cccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCc
Q 048351 492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADI 571 (850)
Q Consensus 492 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 571 (850)
++.+++++++++++|+++ .+|..+. ++++.|++++|++++..|..+. .+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 567889999999999998 5665553 6899999999999955555555 799999999999999976543 789999
Q ss_pred ceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEc
Q 048351 572 QILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651 (850)
Q Consensus 572 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 651 (850)
++|++++|+++ .+|..+..+++| +.|+|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L---------------------------------------------------~~L~l 107 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPAL---------------------------------------------------TVLDV 107 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTC---------------------------------------------------CEEEC
T ss_pred CEEECCCCcCC-cCchhhccCCCC---------------------------------------------------CEEEC
Confidence 99999999998 566655555444 89999
Q ss_pred CCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 652 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 999999888899999999999999999999888888999999999999999999887778899999999999999999 6
Q ss_pred CCCC-CcCCCcCccccCCCCCCCCCCC
Q 048351 732 IPTG-TQLQSFNASVYDGNPELCGLPL 757 (850)
Q Consensus 732 iP~~-~~~~~~~~~~~~gN~~lc~~~~ 757 (850)
+|.. .....+....+.|||+.|+|..
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cChhhcccccCCeEEeCCCCccCcCcc
Confidence 6654 3344566667899999998753
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.8e-24 Score=233.97 Aligned_cols=257 Identities=21% Similarity=0.208 Sum_probs=187.4
Q ss_pred EEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCC----cccccCC-CCCEEEcCCCcccccCCCccccc-----c
Q 048351 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP----DCWLQFN-MLRILNLANNNFSGKIPNSCGYL-----Q 496 (850)
Q Consensus 427 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~ 496 (850)
+++++.|.+++.++.... ..++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 356677777776665433 23558999999999886666 6777888 89999999999987767666665 8
Q ss_pred CccEEeccCCccccCCchhh----cCC-CCcCeeccccccceeecchhHHh---c-CCCCCEEEccCCcccccc----Cc
Q 048351 497 KMLTLSLHHNNFSGELPSLL----KNF-THLRVVALEENSISGNIPAWIGE---S-LLNLVVLDLRSNRFYGKI----PF 563 (850)
Q Consensus 497 ~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~L~~N~l~~~ip~~~~~---~-l~~L~~L~L~~N~l~~~~----p~ 563 (850)
+|++|++++|++++..+..+ ..+ ++|++|++++|++++..+..+.. . .++|++|++++|.+++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 89999999999987666643 444 88999999999998554444432 2 358999999999988543 33
Q ss_pred CcCCCC-CcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccc
Q 048351 564 QLCHLA-DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642 (850)
Q Consensus 564 ~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (850)
.+..++ +|++|+|++|++++..+..+... ...
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----------------------------------------------l~~ 193 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKF-----------------------------------------------LAS 193 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHH-----------------------------------------------HHT
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHH-----------------------------------------------HHh
Confidence 344554 89999999999986655433211 011
Q ss_pred c-ccccEEEcCCCCCCCC----Chhhhhcc-ccCCeEecCCCcCccCCC----ccccccCCCCeeeCCCCcCcccCc---
Q 048351 643 L-GLVKSVDLSSNKLGGE----VPEEIMDL-VGLIGLNLSRNNLTGYIT----PKIGQLQSLDFLDLSRNQFSGGIP--- 709 (850)
Q Consensus 643 l-~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~~~p--- 709 (850)
. +.|+.|||++|++++. ++..+..+ ++|+.|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..+
T Consensus 194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 2 2458999999999864 45556553 589999999999987655 334667899999999999654433
Q ss_pred ----ccccCCCCCCEEEcCCCcCccc
Q 048351 710 ----SSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 710 ----~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
..+..+++|++||+++|++.+.
T Consensus 274 ~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHhccCCceEEEecCCCcCCCc
Confidence 3677888899999999998765
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.2e-23 Score=220.50 Aligned_cols=228 Identities=19% Similarity=0.192 Sum_probs=145.2
Q ss_pred CccEEEccCCCCCCCC-Cc--ccccCCCCCEEEcCCCcccccCCCcc--ccccCccEEeccCCccccCCc----hhhcCC
Q 048351 449 NLVYLDLSSNLLSGKL-PD--CWLQFNMLRILNLANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELP----SLLKNF 519 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~-p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l 519 (850)
.++.+.+.++.+.... .. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4556666665553210 00 12234557777777777776666666 667777777777777765444 334456
Q ss_pred CCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccc--c--CcCcCCCCCcceeecccccCcccCCccccCcccC
Q 048351 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK--I--PFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595 (850)
Q Consensus 520 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 595 (850)
++|++|++++|++++..|..+. .+++|++|++++|++.+. + +..+..+++|++|++++|+++.. +...
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~------ 216 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC------ 216 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH------
T ss_pred cCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH------
Confidence 7777777777777643334443 577777777777776542 1 22335677788888888877521 1100
Q ss_pred ccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcc---ccCCe
Q 048351 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDL---VGLIG 672 (850)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~ 672 (850)
......++.|++|||++|++++..|..++.+ ++|+.
T Consensus 217 -----------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~ 255 (310)
T 4glp_A 217 -----------------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS 255 (310)
T ss_dssp -----------------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC
T ss_pred -----------------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE
Confidence 0001223445778888888887777777666 58888
Q ss_pred EecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351 673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 673 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|+++.
T Consensus 256 L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 256 LNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 888888888 5666664 7888888888888864 33 6777888888888888863
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3e-22 Score=206.83 Aligned_cols=211 Identities=19% Similarity=0.205 Sum_probs=138.3
Q ss_pred ccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecc
Q 048351 498 MLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLS 577 (850)
Q Consensus 498 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 577 (850)
.++++++++.++ .+|..+. +.++.|++++|++++..+..+. ++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 444555555554 3333332 3555555555555533333333 46666666666666666666667777777777777
Q ss_pred cccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351 578 LNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG 657 (850)
Q Consensus 578 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 657 (850)
+|++++..+..|..+++| ++|+|++|+++
T Consensus 92 ~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~L~~N~l~ 120 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQL---------------------------------------------------DKLYLGGNQLK 120 (251)
T ss_dssp TSCCCCCCTTTTTTCTTC---------------------------------------------------CEEECCSSCCC
T ss_pred CCcccccChhHhcccCCC---------------------------------------------------CEEEcCCCcCC
Confidence 777776555555555444 77888888888
Q ss_pred CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCc
Q 048351 658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQ 737 (850)
Q Consensus 658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 737 (850)
+..+..|..+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++++|++++..+....
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~ 200 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHH
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHH
Confidence 77777788888999999999999987777888999999999999999988888899999999999999999876433211
Q ss_pred CCCc------CccccCCCCCCCCCCCCCCCCCC
Q 048351 738 LQSF------NASVYDGNPELCGLPLPSKCWDE 764 (850)
Q Consensus 738 ~~~~------~~~~~~gN~~lc~~~~~~~c~~~ 764 (850)
+..+ ......|+ .+|+.+....|..+
T Consensus 201 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 201 LSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp HHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 1111 11112344 35666666677654
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.2e-24 Score=235.23 Aligned_cols=236 Identities=18% Similarity=0.194 Sum_probs=179.6
Q ss_pred CCCccEEEccCCCCCCCCC----cccccCCCCCEEEcCCC---cccccCCCcc-------ccccCccEEeccCCcccc--
Q 048351 447 GQNLVYLDLSSNLLSGKLP----DCWLQFNMLRILNLANN---NFSGKIPNSC-------GYLQKMLTLSLHHNNFSG-- 510 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~-- 510 (850)
+++|++|+|++|.+.+..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|++++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3678888888888775433 34667888888888885 4455555544 577888899999988886
Q ss_pred --CCchhhcCCCCcCeeccccccceeecchhHHh---cC---------CCCCEEEccCCccc-cccC---cCcCCCCCcc
Q 048351 511 --ELPSLLKNFTHLRVVALEENSISGNIPAWIGE---SL---------LNLVVLDLRSNRFY-GKIP---FQLCHLADIQ 572 (850)
Q Consensus 511 --~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~ 572 (850)
.+|..+..+++|++|+|++|.+++..+..+.. .+ ++|++|++++|+++ +.+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 46778888889999999999886443433332 23 78999999999987 3444 3566788999
Q ss_pred eeecccccCcc-----cCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccccccc
Q 048351 573 ILDLSLNNISG-----NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVK 647 (850)
Q Consensus 573 ~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 647 (850)
+|++++|+++. ..|..+. .++.|+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~---------------------------------------------------~~~~L~ 219 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLA---------------------------------------------------YCQELK 219 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGG---------------------------------------------------GCTTCC
T ss_pred EEECcCCCCCHhHHHHHHHHHhh---------------------------------------------------cCCCcc
Confidence 99999998872 1222333 334458
Q ss_pred EEEcCCCCCC----CCChhhhhccccCCeEecCCCcCccC----CCcccc--ccCCCCeeeCCCCcCcc----cCcccc-
Q 048351 648 SVDLSSNKLG----GEVPEEIMDLVGLIGLNLSRNNLTGY----ITPKIG--QLQSLDFLDLSRNQFSG----GIPSSL- 712 (850)
Q Consensus 648 ~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l- 712 (850)
.|+|++|+++ +.+|..+..+++|+.|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 9999999996 67888899999999999999999876 566663 48999999999999998 488877
Q ss_pred cCCCCCCEEEcCCCcCcccCC
Q 048351 713 SQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 713 ~~l~~L~~L~ls~N~l~g~iP 733 (850)
.++++|++|++++|++++..|
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTSH
T ss_pred hcCCCceEEEccCCcCCcchh
Confidence 668999999999999997654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.2e-22 Score=204.19 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=107.9
Q ss_pred CCCEEEcCCCcccccCCCccccccCccEEeccCCc-cccCCchhhcCCCCcCeecccc-ccceeecchhHHhcCCCCCEE
Q 048351 473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-FSGELPSLLKNFTHLRVVALEE-NSISGNIPAWIGESLLNLVVL 550 (850)
Q Consensus 473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~ip~~~~~~l~~L~~L 550 (850)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 55556666665555444455555556666666554 5544444555555566666655 5555 3443333345556666
Q ss_pred EccCCccccccCcCcCCCCCcc---eeecccc-cCcccCCccccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351 551 DLRSNRFYGKIPFQLCHLADIQ---ILDLSLN-NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD 626 (850)
Q Consensus 551 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (850)
++++|.+++ +|. +..+++|+ +|++++| ++++..+..|.++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 666665554 343 55555555 6666666 5554444444444333
Q ss_pred EEEEEecCccccccccccccc-EEEcCCCCCCCCChhhhhccccCCeEecCCCc-CccCCCcccccc-CCCCeeeCCCCc
Q 048351 627 IVLLTWKGSEYEYKNTLGLVK-SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN-LTGYITPKIGQL-QSLDFLDLSRNQ 703 (850)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~ 703 (850)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++|+.||+++|+
T Consensus 158 --------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 158 --------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp --------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred --------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 5 5666666665 333332222566666666663 665555566666 666666666666
Q ss_pred CcccCcccccCCCCCCEEEcCCC
Q 048351 704 FSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 704 l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
+++..+. .+++|+.|+++++
T Consensus 217 l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 217 VTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCT---TCTTCSEEECTTC
T ss_pred cccCChh---HhccCceeeccCc
Confidence 6643332 4456666666654
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-22 Score=222.09 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=124.7
Q ss_pred EEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCC-CCCEEEccCCcCCCCCch
Q 048351 291 LTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQK-HFSVLDISSAGISDSIPD 369 (850)
Q Consensus 291 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~ 369 (850)
++++.|.+++.+|..+...++|++|+|++|.+++..+.. +...+..++ +|++|++++|.+++..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------------l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE-------------LIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH-------------HHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH-------------HHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 445555555555555555555666666666555433211 001244444 555555555555555444
Q ss_pred hHhhc----CcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcccccccc
Q 048351 370 WFSDT----SHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSF 445 (850)
Q Consensus 370 ~~~~~----~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 445 (850)
.+... .++|++|++++|.+++..+..+.... .
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~------------------------------------------- 105 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL-A------------------------------------------- 105 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH-H-------------------------------------------
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH-H-------------------------------------------
Confidence 44432 24566666666666655444331111 0
Q ss_pred CC-CCccEEEccCCCCCCCCCcccc----c-CCCCCEEEcCCCcccccCC----Ccccccc-CccEEeccCCccccCCch
Q 048351 446 SG-QNLVYLDLSSNLLSGKLPDCWL----Q-FNMLRILNLANNNFSGKIP----NSCGYLQ-KMLTLSLHHNNFSGELPS 514 (850)
Q Consensus 446 ~~-~~L~~L~Ls~n~l~~~~p~~~~----~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~ 514 (850)
.+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+.
T Consensus 106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence 01 3455555555555443333322 2 2456666666666653222 2223333 666666666666655443
Q ss_pred h----hcCC-CCcCeecccccccee----ecchhHHhcCCCCCEEEccCCccccccC----cCcCCCCCcceeecccccC
Q 048351 515 L----LKNF-THLRVVALEENSISG----NIPAWIGESLLNLVVLDLRSNRFYGKIP----FQLCHLADIQILDLSLNNI 581 (850)
Q Consensus 515 ~----l~~l-~~L~~L~L~~N~l~~----~ip~~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l 581 (850)
. +..+ ++|++|+|++|.+++ .++..+....++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 3 3333 467777777777763 1455554324577778887777765433 2345667788888888876
Q ss_pred ccc
Q 048351 582 SGN 584 (850)
Q Consensus 582 ~~~ 584 (850)
.+.
T Consensus 266 ~~i 268 (362)
T 3goz_A 266 KNM 268 (362)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=216.91 Aligned_cols=206 Identities=21% Similarity=0.165 Sum_probs=129.3
Q ss_pred CCccEEEccCCCCCCCCCccc--ccCCCCCEEEcCCCcccccCC----CccccccCccEEeccCCccccCCchhhcCCCC
Q 048351 448 QNLVYLDLSSNLLSGKLPDCW--LQFNMLRILNLANNNFSGKIP----NSCGYLQKMLTLSLHHNNFSGELPSLLKNFTH 521 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 521 (850)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666666666655 666666666666666665433 22334666667777777666666666666666
Q ss_pred cCeeccccccceee--cch-hHHhcCCCCCEEEccCCcccccc--Cc-CcCCCCCcceeecccccCcccCCccccCcccC
Q 048351 522 LRVVALEENSISGN--IPA-WIGESLLNLVVLDLRSNRFYGKI--PF-QLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595 (850)
Q Consensus 522 L~~L~L~~N~l~~~--ip~-~~~~~l~~L~~L~L~~N~l~~~~--p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 595 (850)
|++|++++|++.+. ++. .....+++|++|++++|+++... +. .+..+++|++|||++|++++..|..+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 77777777665532 221 11124666777777777665211 11 23556777777777777776666655444211
Q ss_pred ccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEec
Q 048351 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675 (850)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 675 (850)
+.|++|+|++|+++ .+|..+. ++|+.|+|
T Consensus 251 ------------------------------------------------~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 251 ------------------------------------------------SALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp ------------------------------------------------TTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred ------------------------------------------------CcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 22367778888877 5566554 68888888
Q ss_pred CCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351 676 SRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 676 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 706 (850)
++|++++. |. +..+++|+.|+|++|+++.
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88888864 33 6777888888888888874
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.2e-23 Score=222.81 Aligned_cols=252 Identities=17% Similarity=0.207 Sum_probs=184.7
Q ss_pred CcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc-CCCccccccCccEEec
Q 048351 425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK-IPNSCGYLQKMLTLSL 503 (850)
Q Consensus 425 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L 503 (850)
++.++++++.+.... ......++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCHHH--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCHHH--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 445666665554211 1100115788899999988876665 55788999999999988765 7777888899999999
Q ss_pred cCCccccCCchhhcCCCCcCeeccccc-cceee-cchhHHhcCCCCCEEEccCC-ccccc-cCcCcCCCC-Ccceeeccc
Q 048351 504 HHNNFSGELPSLLKNFTHLRVVALEEN-SISGN-IPAWIGESLLNLVVLDLRSN-RFYGK-IPFQLCHLA-DIQILDLSL 578 (850)
Q Consensus 504 s~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~ 578 (850)
++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 999988888888888999999999998 67653 555554 6899999999999 88764 566677888 999999999
Q ss_pred cc--Cc-ccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCC
Q 048351 579 NN--IS-GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK 655 (850)
Q Consensus 579 N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 655 (850)
|. ++ +.+|..+.+ +++|+.|++++|.
T Consensus 205 ~~~~~~~~~l~~~~~~---------------------------------------------------~~~L~~L~l~~~~ 233 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRR---------------------------------------------------CPNLVHLDLSDSV 233 (336)
T ss_dssp CGGGSCHHHHHHHHHH---------------------------------------------------CTTCSEEECTTCT
T ss_pred CcccCCHHHHHHHHhh---------------------------------------------------CCCCCEEeCCCCC
Confidence 84 44 233333333 3445899999998
Q ss_pred -CCCCChhhhhccccCCeEecCCCc-CccCCCccccccCCCCeeeCCCCcCcccCcccccCC-CCCCEEEcCCCcCcccC
Q 048351 656 -LGGEVPEEIMDLVGLIGLNLSRNN-LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV-NRLSVMDLSHNNLSGKI 732 (850)
Q Consensus 656 -l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~i 732 (850)
+++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++.. .+..+ ..+..|++++|+++|..
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTT
T ss_pred cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcccc
Confidence 777888889999999999999995 33222236788999999999998 4432 33333 24677778999999887
Q ss_pred CCC
Q 048351 733 PTG 735 (850)
Q Consensus 733 P~~ 735 (850)
|..
T Consensus 310 ~~~ 312 (336)
T 2ast_B 310 RPT 312 (336)
T ss_dssp CSS
T ss_pred CCc
Confidence 753
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.6e-21 Score=207.77 Aligned_cols=193 Identities=23% Similarity=0.398 Sum_probs=112.3
Q ss_pred cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351 470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV 549 (850)
Q Consensus 470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~ 549 (850)
.+++|+.|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|++++|+++ .++ .+. .+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence 34455555555555542 22 34455555555555555553222 555555555555555555 333 232 4566666
Q ss_pred EEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351 550 LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629 (850)
Q Consensus 550 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (850)
|++++|.+++. + .+..+++|++|++++|++++..+ +..+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l------------------------------------- 150 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGL------------------------------------- 150 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGC-------------------------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCC-------------------------------------
Confidence 66666666543 2 25666666666666666654322 2222
Q ss_pred EEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351 630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
+.|+.|+|++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|+|++|++++..|
T Consensus 151 --------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 151 --------------TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp --------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred --------------CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence 223667777777764333 6677777777777777775432 6777777777777777775543
Q ss_pred ccccCCCCCCEEEcCCCcCcc
Q 048351 710 SSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 710 ~~l~~l~~L~~L~ls~N~l~g 730 (850)
+..+++|++|++++|++++
T Consensus 213 --l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 213 --LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GTTCTTCCEEEEEEEEEEC
T ss_pred --ccCCCCCCEEEccCCeeec
Confidence 6777777777777777764
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.1e-21 Score=206.76 Aligned_cols=193 Identities=20% Similarity=0.318 Sum_probs=157.3
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ ++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 3678899999998874 44 58889999999999999886544 8889999999999999885 33 688899999999
Q ss_pred cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606 (850)
Q Consensus 527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 606 (850)
+++|+++ .++. +. .+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++
T Consensus 114 l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------ 174 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------ 174 (308)
T ss_dssp CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT------------
T ss_pred CCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC------------
Confidence 9999998 4664 44 68999999999999986544 7889999999999999875333 444433
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 686 (850)
|+.|++++|++++..+ +..+++|+.|+|++|++++..
T Consensus 175 ---------------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-- 211 (308)
T 1h6u_A 175 ---------------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-- 211 (308)
T ss_dssp ---------------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--
T ss_pred ---------------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--
Confidence 4889999999986554 888999999999999999764
Q ss_pred cccccCCCCeeeCCCCcCccc
Q 048351 687 KIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
.+..+++|+.|++++|++++.
T Consensus 212 ~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 212 PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGTTCTTCCEEEEEEEEEECC
T ss_pred cccCCCCCCEEEccCCeeecC
Confidence 388999999999999999853
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.6e-21 Score=199.84 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=165.6
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCc-ccccCCCccccccCccEEeccC-CccccCCchhhcCCCCcCee
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN-FSGKIPNSCGYLQKMLTLSLHH-NNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L 525 (850)
++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478899999999987777789999999999999997 8876667899999999999998 99997777889999999999
Q ss_pred ccccccceeecchhHHhcCCCCC---EEEccCC-ccccccCcCcCCCCCcc-eeecccccCcccCCc-cccCcccCcccc
Q 048351 526 ALEENSISGNIPAWIGESLLNLV---VLDLRSN-RFYGKIPFQLCHLADIQ-ILDLSLNNISGNIPK-CFNNFTAMTQER 599 (850)
Q Consensus 526 ~L~~N~l~~~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~-~~~~l~~L~~l~ 599 (850)
++++|+++ .+|. +. .+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++ .+|. .+.. +
T Consensus 111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~------ 179 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-T------ 179 (239)
T ss_dssp EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-C------
T ss_pred eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-C------
Confidence 99999998 5886 43 688888 9999999 99887777899999999 9999999998 4443 2222 2
Q ss_pred ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCC-CCCCChhhhhcc-ccCCeEecCC
Q 048351 600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK-LGGEVPEEIMDL-VGLIGLNLSR 677 (850)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~ 677 (850)
.|+.|+|++|+ +++..+..|..+ ++|+.|++++
T Consensus 180 ---------------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 180 ---------------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ---------------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ---------------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 34899999995 997778889999 9999999999
Q ss_pred CcCccCCCccccccCCCCeeeCCCCc
Q 048351 678 NNLTGYITPKIGQLQSLDFLDLSRNQ 703 (850)
Q Consensus 678 N~l~~~ip~~l~~l~~L~~L~Ls~N~ 703 (850)
|++++. |.. .+++|+.|+++++.
T Consensus 215 N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CccccC-Chh--HhccCceeeccCcc
Confidence 999964 443 67899999998763
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.9e-23 Score=220.94 Aligned_cols=256 Identities=16% Similarity=0.199 Sum_probs=182.0
Q ss_pred CCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEcc
Q 048351 377 KLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLS 456 (850)
Q Consensus 377 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls 456 (850)
.++.+++++|.+. +..+.......++.+++++|.+++..+ ... .+++|++|+++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~---------------------~~~--~~~~L~~L~L~ 101 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA---------------------EHF--SPFRVQHMDLS 101 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC---------------------SCC--CCBCCCEEECT
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch---------------------hhc--cCCCCCEEEcc
Confidence 3677777777665 222322222455555555555554433 222 34788888888
Q ss_pred CCCCCCC-CCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC-cccc-CCchhhcCCCCcCeeccccc-cc
Q 048351 457 SNLLSGK-LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN-NFSG-ELPSLLKNFTHLRVVALEEN-SI 532 (850)
Q Consensus 457 ~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~N-~l 532 (850)
+|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 8888755 6777888888999999998888777778888889999999988 6765 36777888889999999998 88
Q ss_pred eee-cchhHHhcCC-CCCEEEccCC--ccc-cccCcCcCCCCCcceeeccccc-CcccCCccccCcccCccccccCcccc
Q 048351 533 SGN-IPAWIGESLL-NLVVLDLRSN--RFY-GKIPFQLCHLADIQILDLSLNN-ISGNIPKCFNNFTAMTQERSYNSSAI 606 (850)
Q Consensus 533 ~~~-ip~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~~~~~~~~ 606 (850)
++. ++..+. .++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+.++++|
T Consensus 182 ~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L----------- 249 (336)
T 2ast_B 182 TEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL----------- 249 (336)
T ss_dssp CHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC-----------
T ss_pred ChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC-----------
Confidence 754 555555 688 8999999998 455 4556667788899999999988 666555555444443
Q ss_pred ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCC-CCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK-LGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
+.|++++|. ++......++++++|+.|++++| ++.
T Consensus 250 ----------------------------------------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--- 285 (336)
T 2ast_B 250 ----------------------------------------QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--- 285 (336)
T ss_dssp ----------------------------------------CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---
T ss_pred ----------------------------------------CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---
Confidence 888998885 32222236788899999999988 332
Q ss_pred cccccc-CCCCeeeCCCCcCcccCcccccC
Q 048351 686 PKIGQL-QSLDFLDLSRNQFSGGIPSSLSQ 714 (850)
Q Consensus 686 ~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 714 (850)
..+..+ ..++.|++++|++++..|..++.
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 345555 34888889999999988887664
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=7.6e-21 Score=196.31 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=106.7
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 528 (850)
..++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..+..|..
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 81 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---------- 81 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc----------
Confidence 3455666666555 3443332 34555555555555554445555555555555555555444444444
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 608 (850)
+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|
T Consensus 82 ---------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------- 133 (251)
T 3m19_A 82 ---------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------- 133 (251)
T ss_dssp ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred ---------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------
Confidence 4555555555555554444455556666666666666664444444444333
Q ss_pred ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 688 (850)
+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..+
T Consensus 134 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 134 --------------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 667777777776666667777777777777777777666677
Q ss_pred cccCCCCeeeCCCCcCccc
Q 048351 689 GQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 689 ~~l~~L~~L~Ls~N~l~~~ 707 (850)
..+++|+.|+|++|++++.
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 7777777777777777765
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.2e-22 Score=222.15 Aligned_cols=138 Identities=21% Similarity=0.304 Sum_probs=93.0
Q ss_pred CCcCeeccccccce-eecc---hhHHhcCCCCCEEEccCCccc--c---ccCcCcCCCCCcceeecccccCc----ccCC
Q 048351 520 THLRVVALEENSIS-GNIP---AWIGESLLNLVVLDLRSNRFY--G---KIPFQLCHLADIQILDLSLNNIS----GNIP 586 (850)
Q Consensus 520 ~~L~~L~L~~N~l~-~~ip---~~~~~~l~~L~~L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p 586 (850)
++|++|++++|+++ +.+| ..+. .+++|++|++++|+++ | ..|..+..+++|+.|+|++|.++ +.+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 56666666666665 3333 2232 4667777777777766 2 33446677777888888887775 3444
Q ss_pred ccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC----Chh
Q 048351 587 KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPE 662 (850)
Q Consensus 587 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~ 662 (850)
..+..+++ |+.|+|++|++++. +|.
T Consensus 238 ~~l~~~~~---------------------------------------------------L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 238 IALKSWPN---------------------------------------------------LRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp HHGGGCTT---------------------------------------------------CCEEECTTCCCCHHHHHHHHH
T ss_pred HHHccCCC---------------------------------------------------cCEEECCCCCCchhhHHHHHH
Confidence 44433333 37788888888765 556
Q ss_pred hhhc--cccCCeEecCCCcCcc----CCCccc-cccCCCCeeeCCCCcCcccCc
Q 048351 663 EIMD--LVGLIGLNLSRNNLTG----YITPKI-GQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 663 ~l~~--l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~~p 709 (850)
.+.. +++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6633 7888888888888887 467766 667888899999998887764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.3e-20 Score=202.80 Aligned_cols=223 Identities=19% Similarity=0.209 Sum_probs=154.9
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCC-CccccccCccE-EeccCCccccCCchhhcCCCCcCee
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP-NSCGYLQKMLT-LSLHHNNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L 525 (850)
+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|++++..|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467888888888885555678888888888888888766555 45777777664 5666788887777888888888888
Q ss_pred ccccccceeecchhHHhcCCCCCEEEccC-CccccccCcCcCCCC-CcceeecccccCcccCCccccCcccCccccccCc
Q 048351 526 ALEENSISGNIPAWIGESLLNLVVLDLRS-NRFYGKIPFQLCHLA-DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNS 603 (850)
Q Consensus 526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 603 (850)
++++|+++ .+|...+....++..|++.+ +.+....+..|..+. .++.|++++|+|+...+..+. ..+
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~--------- 178 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQ--------- 178 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEE---------
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccc---------
Confidence 88888887 45544333456677788865 566655555666654 588889999988754333332 222
Q ss_pred cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC-CCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351 604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS-NKLGGEVPEEIMDLVGLIGLNLSRNNLTG 682 (850)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 682 (850)
++.+++++ |.++...++.|..+++|+.|||++|+|+.
T Consensus 179 ------------------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 179 ------------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ------------------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ------------------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 37788875 56664444567889999999999999986
Q ss_pred CCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc
Q 048351 683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN 727 (850)
Q Consensus 683 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 727 (850)
..+..+.++++|+.+++ ++++ .+| .+.++++|+.++++++.
T Consensus 217 lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 217 LPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCSSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred cChhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCc
Confidence 55555555444444433 2343 566 47888889999988753
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=9.2e-20 Score=182.39 Aligned_cols=63 Identities=22% Similarity=0.166 Sum_probs=34.8
Q ss_pred cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716 (850)
Q Consensus 647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (850)
+.|+|++|++++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|..++.++
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcccc
Confidence 4555555555544444455555556666666555432 23556666666666666666555544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.7e-20 Score=209.89 Aligned_cols=188 Identities=23% Similarity=0.321 Sum_probs=110.1
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 528 (850)
+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 44433 255666666666666 444 335666666666666664 444 433 66666666
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 608 (850)
+|++++ +|. .+++|++|++++|.+++ +|. .+++|++|+|++|++++ +|. +. ++
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------- 181 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------- 181 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence 666663 554 25666666666666664 443 35566666666666654 443 22 22
Q ss_pred ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccC-------CeEecCCCcCc
Q 048351 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL-------IGLNLSRNNLT 681 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~ 681 (850)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 182 -------------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 182 -------------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp -------------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred -------------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 256666666666 4444 443 45 67777777776
Q ss_pred cCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716 (850)
Q Consensus 682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 716 (850)
.+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 3566666677777777777777777776666543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=6.4e-20 Score=209.51 Aligned_cols=182 Identities=22% Similarity=0.327 Sum_probs=155.0
Q ss_pred CCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEc
Q 048351 473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552 (850)
Q Consensus 473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L 552 (850)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +. .+|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence 89999999999996 77665 378999999999999 677 557999999999999995 888 54 29999999
Q ss_pred cCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEe
Q 048351 553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW 632 (850)
Q Consensus 553 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (850)
++|.+++ +|. .+++|+.|++++|+|++ +|. .+++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~-------------------------------------- 161 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS-------------------------------------- 161 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT--------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC--------------------------------------
Confidence 9999997 665 68999999999999986 554 2233
Q ss_pred cCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCC-------CeeeCCCCcCc
Q 048351 633 KGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSL-------DFLDLSRNQFS 705 (850)
Q Consensus 633 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~ 705 (850)
|+.|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 162 -------------L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 162 -------------LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp -------------CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred -------------cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 3899999999997 676 66 89999999999999 5676 665 77 99999999999
Q ss_pred ccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351 706 GGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 706 ~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
.+|..+..+++|++|++++|+++|.+|.
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5888888899999999999999998774
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=6e-20 Score=183.77 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=53.0
Q ss_pred cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|++++|.+.+. ++.|++|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence 5566666666655555566667777777777777765555566677777777777766543 345666777777
Q ss_pred cCcccCCC
Q 048351 727 NLSGKIPT 734 (850)
Q Consensus 727 ~l~g~iP~ 734 (850)
+++|.+|.
T Consensus 176 ~~~g~ip~ 183 (208)
T 2o6s_A 176 KHSGVVRN 183 (208)
T ss_dssp HCTTTBBC
T ss_pred hCCceeec
Confidence 77777764
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=186.84 Aligned_cols=157 Identities=22% Similarity=0.233 Sum_probs=130.2
Q ss_pred CeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY 601 (850)
Q Consensus 523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 601 (850)
+.+++++|.++ .+|..+. ..+++|++++|.+++..| ..|..+++|++|+|++|+|++..+..|.++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 35666667665 5665543 356788888888876644 457788888888888888887776667666555
Q ss_pred CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 681 (850)
++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus 84 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 84 ---------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp ---------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred ---------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 78999999999888888999999999999999999
Q ss_pred cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
+..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|..+.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 98899999999999999999999999999999999999999999999987553
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.1e-19 Score=197.31 Aligned_cols=244 Identities=16% Similarity=0.110 Sum_probs=173.3
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCc-hhhcCCCCcCe-eccc
Q 048351 451 VYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRV-VALE 528 (850)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~ 528 (850)
++++-++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46777888887 566554 3578888999888886555678888888888888888866555 46778877765 5566
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeeccc-ccCcccCCccccCcccCccccccCccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSL-NNISGNIPKCFNNFTAMTQERSYNSSAIT 607 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 607 (850)
.|+++ .++...+..+++|++|++++|++++..+..+.....+..+++.+ |++....+..|..+.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 78887 56555545788888888888888877666676777777888765 455544333443322
Q ss_pred cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCC-CcCccCCCc
Q 048351 608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSR-NNLTGYITP 686 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~ 686 (850)
..++.|+|++|+|+. +|.......+|+.|++++ |.++...+.
T Consensus 154 ------------------------------------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 154 ------------------------------------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp ------------------------------------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred ------------------------------------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHH
Confidence 124789999999994 555555667899999985 667755556
Q ss_pred cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCC
Q 048351 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELC 753 (850)
Q Consensus 687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc 753 (850)
.|+++++|++|||++|+|+...+..| ..|+.|.+.+++--..+|....+..+....+ ++++.|
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c 259 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC 259 (350)
T ss_dssp TTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred HhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence 78999999999999999996655555 4566666665544447786555555544333 466666
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=6.9e-19 Score=177.34 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=129.9
Q ss_pred CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccC
Q 048351 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYN 602 (850)
Q Consensus 523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 602 (850)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 45666677776 6666542 578888888888887777788888889999999999888778777766655
Q ss_pred ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351 603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG 682 (850)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 682 (850)
++|+|++|++++..+..|..+++|+.|+|++|++++
T Consensus 83 --------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 83 --------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred --------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 789999999987777778889999999999999999
Q ss_pred CCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 683 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8899999999999999999999988888899999999999999999864
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=174.02 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=119.2
Q ss_pred cEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeeccc
Q 048351 499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSL 578 (850)
Q Consensus 499 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 578 (850)
+.+++++|.++ .+|..+. ..+++|++++|++++..|...+..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35566666555 3444332 34566777777776443444344678888888888888877777888888888888888
Q ss_pred ccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCC
Q 048351 579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGG 658 (850)
Q Consensus 579 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 658 (850)
|++++..|..|.++++| ++|+|++|++++
T Consensus 91 N~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~N~l~~ 119 (220)
T 2v70_A 91 NRLENVQHKMFKGLESL---------------------------------------------------KTLMLRSNRITC 119 (220)
T ss_dssp SCCCCCCGGGGTTCSSC---------------------------------------------------CEEECTTSCCCC
T ss_pred CccCccCHhHhcCCcCC---------------------------------------------------CEEECCCCcCCe
Confidence 88887766666665555 788999999988
Q ss_pred CChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351 659 EVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 659 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888889999999999999999998888899999999999999999886654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.8e-18 Score=174.14 Aligned_cols=156 Identities=23% Similarity=0.215 Sum_probs=132.0
Q ss_pred cCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351 522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY 601 (850)
Q Consensus 522 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 601 (850)
-+.++.++++++ .+|..+ .++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 445677777776 777654 3688899999999988888888889999999999999876555555555555
Q ss_pred CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 681 (850)
+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 91 ---------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 91 ---------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 88999999999888888899999999999999999
Q ss_pred cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
.+|..+..+++|+.|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 678899999999999999999998888889999999999999999998765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=9.4e-19 Score=190.85 Aligned_cols=176 Identities=26% Similarity=0.271 Sum_probs=102.2
Q ss_pred CEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhc-CCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLK-NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR 553 (850)
Q Consensus 475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~ 553 (850)
+.++++++.++ .+|..+. ..++.|+|++|++++..+..+. ++++|+.|+|++|+++ .++...+.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 57777777777 4565443 3567777777777765555565 6667777777777766 3333322356666666666
Q ss_pred CCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEec
Q 048351 554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK 633 (850)
Q Consensus 554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (850)
+|++++..+..|..+++|++|+|++|+|++..|..|.++++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------------- 138 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-------------------------------------- 138 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------------------------------------
Confidence 666665555556666666666666666665555555444433
Q ss_pred CcccccccccccccEEEcCCCCCCCCChhhh---hccccCCeEecCCCcCccCCCccccccCC--CCeeeCCCCcCc
Q 048351 634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI---MDLVGLIGLNLSRNNLTGYITPKIGQLQS--LDFLDLSRNQFS 705 (850)
Q Consensus 634 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~Ls~N~l~ 705 (850)
+.|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|.+.
T Consensus 139 -------------~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 139 -------------QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------------CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------------CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 556666666654333333 34555555555555555444444555544 255555555554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.4e-18 Score=183.22 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=56.6
Q ss_pred EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccc
Q 048351 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS 531 (850)
Q Consensus 452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 531 (850)
.+.+..+.+++.. .+..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|+
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 3344444444322 233455566666666665532 2 35555566666666665554322 5555555555555555
Q ss_pred ceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc
Q 048351 532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582 (850)
Q Consensus 532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 582 (850)
++ .+|. +. .+++|++|++++|++++. ..+..+++|+.|++++|+++
T Consensus 102 l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 102 VK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 54 2332 22 344455555555444432 12333444444444444433
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.3e-18 Score=180.32 Aligned_cols=190 Identities=21% Similarity=0.259 Sum_probs=157.8
Q ss_pred CCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEc
Q 048351 473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552 (850)
Q Consensus 473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L 552 (850)
.+..+.+..+.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|+++ .++. +. .+++|++|++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l 97 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFL 97 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEEC
Confidence 3445567777776543 346789999999999999854 4 4889999999999999998 4555 44 7999999999
Q ss_pred cCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEe
Q 048351 553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW 632 (850)
Q Consensus 553 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (850)
++|.+++ +| .+..+++|++|++++|++++. +.+..+
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l---------------------------------------- 133 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHL---------------------------------------- 133 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGC----------------------------------------
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCC----------------------------------------
Confidence 9999986 33 489999999999999999853 233333
Q ss_pred cCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccc
Q 048351 633 KGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL 712 (850)
Q Consensus 633 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 712 (850)
+.|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++. | .+
T Consensus 134 -----------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l 196 (291)
T 1h6t_A 134 -----------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-AL 196 (291)
T ss_dssp -----------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GG
T ss_pred -----------CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hh
Confidence 3458999999999976 679999999999999999997655 99999999999999999964 4 48
Q ss_pred cCCCCCCEEEcCCCcCcc
Q 048351 713 SQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 713 ~~l~~L~~L~ls~N~l~g 730 (850)
..+++|++|++++|+++.
T Consensus 197 ~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEECcCCcccC
Confidence 999999999999999985
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=6.1e-20 Score=210.98 Aligned_cols=189 Identities=19% Similarity=0.212 Sum_probs=97.2
Q ss_pred cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCc-------------cccCCchhhcCCCCcCeec-cccccceee
Q 048351 470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-------------FSGELPSLLKNFTHLRVVA-LEENSISGN 535 (850)
Q Consensus 470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-L~~N~l~~~ 535 (850)
.++.|+.|+|++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+. .
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence 3455556666666655 455556666666666665543 4455666677777777776 5555443 2
Q ss_pred cchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCC
Q 048351 536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSR 615 (850)
Q Consensus 536 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 615 (850)
++ .+.+++|.++...+ ..|+.|+|++|.+++ +|. +.++++|
T Consensus 425 L~-----------~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-------------------- 465 (567)
T 1dce_A 425 LR-----------SKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-------------------- 465 (567)
T ss_dssp HH-----------HHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC--------------------
T ss_pred hh-----------hhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC--------------------
Confidence 22 22233333332211 124555555555543 232 3332222
Q ss_pred cccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCC
Q 048351 616 TTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD 695 (850)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 695 (850)
+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .++++++|+
T Consensus 466 -------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 466 -------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp -------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred -------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 45555555555 445555555555555555555554 33 455555555
Q ss_pred eeeCCCCcCcccC-cccccCCCCCCEEEcCCCcCcccCC
Q 048351 696 FLDLSRNQFSGGI-PSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 696 ~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
.|+|++|+|++.+ |..+..+++|++|++++|++++.+|
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5555555555544 5555555555555555555555444
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2e-18 Score=199.53 Aligned_cols=124 Identities=24% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 344444555444442 22 24444444555554444443322 4444444444444444442 12 3444444444444
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 582 (850)
++|+++ .++. +. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|+++
T Consensus 117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 444444 2221 22 344444444444444432 23344444444444444443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.3e-17 Score=167.37 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=92.5
Q ss_pred CCCCCccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCccc
Q 048351 65 EKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFI 144 (850)
Q Consensus 65 ~~~~~c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~ 144 (850)
.++..|+|++|.|++. .+ +.+|..+. ++|++|+|++|.+++. .|..+
T Consensus 14 ~~~~~Cs~~~v~c~~~-----------------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~ 60 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK-----------------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVF 60 (229)
T ss_dssp CTTCEEETTEEECTTS-----------------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTT
T ss_pred CCCCEEeCCEeEccCC-----------------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHh
Confidence 3577899999999642 11 23444333 7899999999999975 67888
Q ss_pred CCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCC
Q 048351 145 GSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPS 224 (850)
Q Consensus 145 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 224 (850)
..+++|++|+|++|.+++..+..|..+++|++|+|++|++. ......+..+++|++|+|++|+++.+ +..+..+++
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~ 136 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTEL---PRGIERLTH 136 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCSC---CTTGGGCTT
T ss_pred hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccccc---CcccccCCC
Confidence 89999999999999998666667788888888888888763 22233456666666666666666642 333444444
Q ss_pred CcEEEccCCCCC
Q 048351 225 LKTLYLEQCDLQ 236 (850)
Q Consensus 225 L~~L~L~~n~l~ 236 (850)
|++|+|++|.++
T Consensus 137 L~~L~L~~N~l~ 148 (229)
T 3e6j_A 137 LTHLALDQNQLK 148 (229)
T ss_dssp CSEEECCSSCCC
T ss_pred CCEEECCCCcCC
Confidence 444444444444
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=9.9e-18 Score=168.84 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=106.4
Q ss_pred EEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccc
Q 048351 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLN 579 (850)
Q Consensus 500 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 579 (850)
.++++++.++ .+|..+. ++|+.|++++|+++ .+|...+..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4455555554 3343332 45666666666665 344333335677777777777777666777777778888888888
Q ss_pred cCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC
Q 048351 580 NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE 659 (850)
Q Consensus 580 ~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 659 (850)
+|++..+..|.++++| +.|+|++|++++.
T Consensus 91 ~l~~l~~~~f~~l~~L---------------------------------------------------~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 91 KITELPKSLFEGLFSL---------------------------------------------------QLLLLNANKINCL 119 (220)
T ss_dssp CCCCCCTTTTTTCTTC---------------------------------------------------CEEECCSSCCCCC
T ss_pred cCCccCHhHccCCCCC---------------------------------------------------CEEECCCCCCCEe
Confidence 8775544445554444 7788888888888
Q ss_pred ChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351 660 VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 660 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 706 (850)
.|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88888888888888888888888777778888889999999988874
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=6.3e-18 Score=184.31 Aligned_cols=176 Identities=26% Similarity=0.222 Sum_probs=142.1
Q ss_pred EEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccc
Q 048351 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS 485 (850)
Q Consensus 406 ~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 485 (850)
.++++++.++..+...+..++.|++++|.+++..+......+++|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 45666666655444445567777777777776554433224588999999999999888888999999999999999999
Q ss_pred ccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHH---hcCCCCCEEEccCCccccccC
Q 048351 486 GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG---ESLLNLVVLDLRSNRFYGKIP 562 (850)
Q Consensus 486 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~~L~L~~N~l~~~~p 562 (850)
+..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++ ..+++|++|+|++|++++..+
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 877778999999999999999999888889999999999999999998 6887765 358999999999999996665
Q ss_pred cCcCCCCC--cceeecccccCc
Q 048351 563 FQLCHLAD--IQILDLSLNNIS 582 (850)
Q Consensus 563 ~~l~~l~~--L~~L~Ls~N~l~ 582 (850)
..+..++. ++.|+|++|++.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 66777776 488999999986
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.5e-17 Score=192.08 Aligned_cols=147 Identities=28% Similarity=0.311 Sum_probs=72.8
Q ss_pred CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEE
Q 048351 422 PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL 501 (850)
Q Consensus 422 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 501 (850)
+..|+.|++++|.+..... + ..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l--~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-I--QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-G--GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCChH-H--ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 4455555555555544321 1 123455555555555554332 5555555555555555543 22 45555555555
Q ss_pred eccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccC
Q 048351 502 SLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI 581 (850)
Q Consensus 502 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 581 (850)
+|++|++++ + ..+..+++|+.|+|++|+++ .+ ..+. .+++|+.|+|++|.+.+..| +..+++|+.|+|++|+|
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 555555553 2 23455555555555555555 22 2222 45555555555555554433 45555555555555555
Q ss_pred c
Q 048351 582 S 582 (850)
Q Consensus 582 ~ 582 (850)
+
T Consensus 188 ~ 188 (605)
T 1m9s_A 188 S 188 (605)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.6e-18 Score=205.53 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=110.3
Q ss_pred EcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcc
Q 048351 478 NLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF 557 (850)
Q Consensus 478 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 557 (850)
+++.|.+. ..|..+..++.|+.|+|++|++. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.|
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRL 282 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCC
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcC
Confidence 33444444 45666777788888888888877 56666667888888888888887 7887776 688888888888888
Q ss_pred ccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccc
Q 048351 558 YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY 637 (850)
Q Consensus 558 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (850)
+ .+|..|+.+++|++|+|++|.|+ .+|..|+++++|
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------------------------------------------ 318 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------------------------------------------ 318 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC------------------------------------------
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc------------------------------------------
Confidence 8 66888888888888888888886 667666666555
Q ss_pred ccccccccccEEEcCCCCCCCCChhhhhcccc-CCeEecCCCcCccCCCccccccCCCCeeeCCCC--------cCcccC
Q 048351 638 EYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG-LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN--------QFSGGI 708 (850)
Q Consensus 638 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~~ 708 (850)
+.|+|++|+|++.+|..+..+.. +..|+|++|.+++.+|. .|+.|++++| .+.+..
T Consensus 319 ---------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~ 383 (727)
T 4b8c_D 319 ---------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQST 383 (727)
T ss_dssp ---------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------
T ss_pred ---------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccc
Confidence 77888888888888887766532 23478888888888775 4456667766 455555
Q ss_pred cccccCCCCCCEEEcCCCcCcccCC
Q 048351 709 PSSLSQVNRLSVMDLSHNNLSGKIP 733 (850)
Q Consensus 709 p~~l~~l~~L~~L~ls~N~l~g~iP 733 (850)
+..+..+..+....+++|-+.+...
T Consensus 384 ~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 384 EHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ------------------CCCGGGC
T ss_pred cchhhcccccceeeeeccccccccC
Confidence 5666677777888888888865433
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=4.7e-18 Score=167.32 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=118.5
Q ss_pred CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCc-cccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351 548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD 626 (850)
Q Consensus 548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (850)
+++++++|.++ .+|..+.. ++++|++++|++++..+. .+..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 57777777775 56655533 788888888888765553 24444444
Q ss_pred EEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351 627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 706 (850)
++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 57 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 57 --------------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp --------------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred --------------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence 889999999998889999999999999999999999888889999999999999999999
Q ss_pred cCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCC
Q 048351 707 GIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP 756 (850)
Q Consensus 707 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~ 756 (850)
.+|..+..+++|++|++++|+++|..|.......+....+.++...|+.|
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99999999999999999999999876643221122223345555555443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-17 Score=163.40 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=101.6
Q ss_pred cCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCc
Q 048351 517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT 596 (850)
Q Consensus 517 ~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 596 (850)
..+++|+.|++++|.++ .+| .+. .+++|++|++++|.++. +..+..+++|++|++++|++++..|..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L- 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL- 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC-
Confidence 34455556666666655 455 333 46666666666665542 2356667777777777777776556555554444
Q ss_pred cccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecC
Q 048351 597 QERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLS 676 (850)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 676 (850)
++|+|++|++++..|..++.+++|+.|+++
T Consensus 115 --------------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 115 --------------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp --------------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred --------------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 677777777777777778888888888888
Q ss_pred CCc-CccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351 677 RNN-LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 677 ~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
+|+ ++ .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus 145 ~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 145 YNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 887 55 444 577888888888888888753 3 67778888888888888753
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=9.8e-18 Score=173.84 Aligned_cols=171 Identities=19% Similarity=0.280 Sum_probs=119.8
Q ss_pred cccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcce
Q 048351 494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI 573 (850)
Q Consensus 494 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 573 (850)
.+.++..+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+. .+++|++|++++|++++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 35556666667666663 23 4566677777777777776 565 343 57777777777777775444 677777777
Q ss_pred eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351 574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653 (850)
Q Consensus 574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 653 (850)
|++++|++++. |.... +.|+.|+|++
T Consensus 90 L~L~~N~l~~l-~~~~~-----------------------------------------------------~~L~~L~L~~ 115 (263)
T 1xeu_A 90 LSVNRNRLKNL-NGIPS-----------------------------------------------------ACLSRLFLDN 115 (263)
T ss_dssp EECCSSCCSCC-TTCCC-----------------------------------------------------SSCCEEECCS
T ss_pred EECCCCccCCc-Ccccc-----------------------------------------------------CcccEEEccC
Confidence 77777777642 21110 2237788888
Q ss_pred CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
|++++. + .+..+++|+.|+|++|++++. + .++.+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888753 3 577888888888888888864 3 688888888888888888876 6678888888888888888754
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.4e-17 Score=162.05 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=107.0
Q ss_pred ccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572 (850)
Q Consensus 493 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 572 (850)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34555566666666555 334 4556666666666666554 333 333 577788888888888777777788888888
Q ss_pred eeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcC
Q 048351 573 ILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLS 652 (850)
Q Consensus 573 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 652 (850)
+|++++|++++..|..+..+++| +.|+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L---------------------------------------------------~~L~L~ 144 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKV---------------------------------------------------NSIDLS 144 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSC---------------------------------------------------CEEECC
T ss_pred EEEecCCccCcHhHHHHhhCCCC---------------------------------------------------CEEEcc
Confidence 88888888877666666555544 788888
Q ss_pred CCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351 653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 653 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 706 (850)
+|++.+.+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 887333555 688888999999999998864 3 78888999999999998864
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=5.9e-19 Score=202.77 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=138.5
Q ss_pred ccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572 (850)
Q Consensus 493 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 572 (850)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|.....+|..+. .+.+.+.+|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhcc
Confidence 45677888888888887 6788888888888888876652212221111 1123345555666666666
Q ss_pred eee-cccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEc
Q 048351 573 ILD-LSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651 (850)
Q Consensus 573 ~L~-Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 651 (850)
.|+ ++.|.+.. ++.+ ....+. ... -....|+.|+|
T Consensus 413 ~L~~l~~n~~~~--------L~~l---~l~~n~--------------------------------i~~-l~~~~L~~L~L 448 (567)
T 1dce_A 413 AVDPMRAAYLDD--------LRSK---FLLENS--------------------------------VLK-MEYADVRVLHL 448 (567)
T ss_dssp HHCGGGHHHHHH--------HHHH---HHHHHH--------------------------------HHH-HHHTTCSEEEC
T ss_pred cCcchhhcccch--------hhhh---hhhccc--------------------------------ccc-cCccCceEEEe
Confidence 666 55554431 1110 000000 000 00012589999
Q ss_pred CCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 652 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
++|+|++ +|. ++.+++|+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .+..+++|++|++++|++++.
T Consensus 449 s~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 449 AHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp TTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred cCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 9999996 676 999999999999999999 789999999999999999999997 67 899999999999999999988
Q ss_pred C-CCC-CcCCCcCccccCCCCC
Q 048351 732 I-PTG-TQLQSFNASVYDGNPE 751 (850)
Q Consensus 732 i-P~~-~~~~~~~~~~~~gN~~ 751 (850)
+ |.. ..+..+....+.+|+.
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGG
T ss_pred CCcHHHhcCCCCCEEEecCCcC
Confidence 6 643 4566677777888864
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2.6e-18 Score=203.70 Aligned_cols=134 Identities=24% Similarity=0.328 Sum_probs=87.9
Q ss_pred EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccc
Q 048351 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS 531 (850)
Q Consensus 452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 531 (850)
.++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+++ .+|..|.++++|++|+|++|+
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3444445544 45666777777777777777777 56666667777777777777777 677777777777888888777
Q ss_pred ceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccC
Q 048351 532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN 591 (850)
Q Consensus 532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 591 (850)
|+ .+|..+. .+++|++|+|++|.++ .+|..|+.+++|++|+|++|+|++.+|..+..
T Consensus 282 l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 282 LT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 77 7777766 5777888888888776 66767777778888888888877777765543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.2e-17 Score=161.33 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=93.0
Q ss_pred CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCc-CcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF-QLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY 601 (850)
Q Consensus 523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 601 (850)
+.+++++|+++ .+|..+. .++++|++++|.+++..+. .+..+++|++|+|++|+|++..|..|.++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 45566666664 5665443 2667777777777655543 36677777777777777776666666555544
Q ss_pred CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 681 (850)
++|+|++|++++..|..|.++++|+.|+|++|+++
T Consensus 81 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 81 ---------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp ---------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 67777777777777777777888888888888888
Q ss_pred cCCCccccccCCCCeeeCCCCcCcccCc
Q 048351 682 GYITPKIGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
+.+|..|..+++|++|+|++|.+++..+
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7778888888888888888888876654
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.7e-17 Score=170.49 Aligned_cols=169 Identities=20% Similarity=0.256 Sum_probs=95.1
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
.+++.+++++|.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l-------- 84 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDL-------- 84 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC--------
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccC--------
Confidence 34555566666655322 3555566666666666555 233 44555555555555555553222 4444
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccc
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAIT 607 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 607 (850)
++|++|++++|++++. |. +.. ++|+.|++++|++++. + .+..+++
T Consensus 85 -----------------~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~------------- 129 (263)
T 1xeu_A 85 -----------------TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKN------------- 129 (263)
T ss_dssp -----------------SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTT-------------
T ss_pred -----------------CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCccc-------------
Confidence 4455555555554432 21 112 5566666666666542 1 2322222
Q ss_pred cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcc
Q 048351 608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 687 (850)
|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..
T Consensus 130 --------------------------------------L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 130 --------------------------------------LEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp --------------------------------------CCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred --------------------------------------ccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 36677777777654 3 567777777777777777765 56
Q ss_pred ccccCCCCeeeCCCCcCccc
Q 048351 688 IGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 688 l~~l~~L~~L~Ls~N~l~~~ 707 (850)
+..+++|+.|++++|++++.
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 77777777777777777755
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2e-16 Score=170.06 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=147.7
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcc----ccCCchhhcCCCCc
Q 048351 447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF----SGELPSLLKNFTHL 522 (850)
Q Consensus 447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L 522 (850)
+++|+.|+|.+ .++...+.+|.+|++|+.+++++|.+....+.+|.++.++..+.+..+.. ...-...|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67888888888 77766667788888888888888888767777788777777777665322 22234456666666
Q ss_pred C-eeccccccceeecchhHHhc---CCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccc
Q 048351 523 R-VVALEENSISGNIPAWIGES---LLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQE 598 (850)
Q Consensus 523 ~-~L~L~~N~l~~~ip~~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 598 (850)
+ .+.+... +.++..++.. ..+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 6 4444332 2444444322 4456666665543221111111236778888888888876555666666655
Q ss_pred cccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCC-eEecCC
Q 048351 599 RSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLI-GLNLSR 677 (850)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~ 677 (850)
+.|+|++| ++...+..|.++++|+ .+++++
T Consensus 253 ------------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 253 ------------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp ------------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ------------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 67778777 6666667788888888 888887
Q ss_pred CcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEE
Q 048351 678 NNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMD 722 (850)
Q Consensus 678 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 722 (850)
.++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77766677888888888888888888877777888888888775
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.5e-16 Score=149.04 Aligned_cols=137 Identities=21% Similarity=0.214 Sum_probs=114.8
Q ss_pred CCCCCEEEccCCccc-cccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccc
Q 048351 544 LLNLVVLDLRSNRFY-GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVH 622 (850)
Q Consensus 544 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 622 (850)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 72 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK---------------------------- 72 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS----------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC----------------------------
Confidence 468899999999987 67888888899999999999998854 44444443
Q ss_pred eEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC-CccccccCCCCeeeCCC
Q 048351 623 IFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI-TPKIGQLQSLDFLDLSR 701 (850)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~ 701 (850)
|+.|+|++|++++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|++++
T Consensus 73 -----------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 73 -----------------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp -----------------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred -----------------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 488999999999888888888999999999999999753 27889999999999999
Q ss_pred CcCcccCc---ccccCCCCCCEEEcCCCcCcccCCC
Q 048351 702 NQFSGGIP---SSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 702 N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
|++++..+ ..+..+++|++||+++|.+. .+|.
T Consensus 130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99997766 58899999999999999987 4453
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=152.64 Aligned_cols=129 Identities=23% Similarity=0.304 Sum_probs=105.5
Q ss_pred CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeE
Q 048351 548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627 (850)
Q Consensus 548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (850)
+++++++|.++ .+|..+. ++|++|++++|+|+ .+|..|.++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 46777777776 4555442 57888888888887 556555554444
Q ss_pred EEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 628 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus 57 -------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 57 -------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred -------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence 7888999999888888899999999999999999988888899999999999999999987
Q ss_pred CcccccCCCCCCEEEcCCCcCccc
Q 048351 708 IPSSLSQVNRLSVMDLSHNNLSGK 731 (850)
Q Consensus 708 ~p~~l~~l~~L~~L~ls~N~l~g~ 731 (850)
.+..|..+++|++|++++|++.+.
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 118 PEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCEECS
T ss_pred ChhhhhcCccccEEEeCCCCeecC
Confidence 777899999999999999999865
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8.6e-16 Score=144.39 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=110.0
Q ss_pred CCCCCEEEccCCccc-cccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccc
Q 048351 544 LLNLVVLDLRSNRFY-GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVH 622 (850)
Q Consensus 544 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 622 (850)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 467999999999998 78888888999999999999998865 44444433
Q ss_pred eEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC-CCccccccCCCCeeeCCC
Q 048351 623 IFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY-ITPKIGQLQSLDFLDLSR 701 (850)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~ 701 (850)
|++|+|++|++++.+|..++.+++|+.|++++|++++. .+..++.+++|++|++++
T Consensus 66 -----------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 66 -----------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp -----------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred -----------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 48999999999988999998999999999999999974 347899999999999999
Q ss_pred CcCcccCc---ccccCCCCCCEEEcCC
Q 048351 702 NQFSGGIP---SSLSQVNRLSVMDLSH 725 (850)
Q Consensus 702 N~l~~~~p---~~l~~l~~L~~L~ls~ 725 (850)
|++++..+ ..+..+++|++||+++
T Consensus 123 N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 123 CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcccchHHHHHHHHHHCCCcccccCCC
Confidence 99998776 6789999999999874
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.3e-15 Score=144.92 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=104.3
Q ss_pred CCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD 626 (850)
Q Consensus 547 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (850)
.+.+++++|+++ .+|..+ .++|+.|++++|++++..+..+..+++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L------------------------------- 54 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL------------------------------- 54 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence 456777777776 344333 3577888888888776555555554444
Q ss_pred EEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351 627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 706 (850)
++|++++|++++..+..++.+++|+.|+|++|++++..+..+..+++|++|++++|++++
T Consensus 55 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 55 --------------------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred --------------------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence 788888888887777778888999999999999998777778889999999999999997
Q ss_pred cCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351 707 GIPSSLSQVNRLSVMDLSHNNLSGKIPT 734 (850)
Q Consensus 707 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 734 (850)
..+..+..+++|++|++++|+++|.+|.
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 115 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred eCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 7777788899999999999999987663
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.6e-15 Score=144.30 Aligned_cols=135 Identities=22% Similarity=0.194 Sum_probs=114.3
Q ss_pred CCccEEEccCCCCC-CCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 448 QNLVYLDLSSNLLS-GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67899999999987 67888888899999999999998865 7788899999999999999987888888899999999
Q ss_pred cccccceeecc--hhHHhcCCCCCEEEccCCccccccC---cCcCCCCCcceeecccccCcccCCc
Q 048351 527 LEENSISGNIP--AWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILDLSLNNISGNIPK 587 (850)
Q Consensus 527 L~~N~l~~~ip--~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~ 587 (850)
+++|+++ .+| ..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999998 554 4444 68999999999999986655 47888999999999999886 3443
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=3.4e-15 Score=160.47 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=194.1
Q ss_pred CCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCc--ccCChhhhhhccCCcCEEEccCCcCcccCCCC------
Q 048351 350 QKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT--GRFPNYISSMFILESPGIDISSNHLEGPSPSL------ 421 (850)
Q Consensus 350 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~------ 421 (850)
+.+++.|.++++ +....-..+...+++|+.|+|++|++. ...+..+ +.+..+.+..|.+.......
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~-----~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY-----PNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS-----GGGCCEEECTTEECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc-----cccccccccccccCHHHhcccccccc
Confidence 456778888764 221112233333567899999998887 3222222 12233444444433222223
Q ss_pred --CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcc----cccCCCccccc
Q 048351 422 --PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF----SGKIPNSCGYL 495 (850)
Q Consensus 422 --~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~p~~~~~l 495 (850)
+++|+.+++.+ .++. ++...+..+++|+.+++++|.+....+.+|.++.++..+.+..+.. .......|.++
T Consensus 98 ~g~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 68888999988 6654 4445555789999999999999878888999988888888776432 22334456677
Q ss_pred cCcc-EEeccCCccccCCchhh----cCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCC
Q 048351 496 QKML-TLSLHHNNFSGELPSLL----KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLAD 570 (850)
Q Consensus 496 ~~L~-~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 570 (850)
..|+ .+.+.... .++..+ ....+++.+.+.++-.. .-...+...+++|+.+++++|+++...+.+|.++++
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 7777 55554432 233222 13456666666654322 222233334889999999999999777788999999
Q ss_pred cceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccccccc-EE
Q 048351 571 IQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVK-SV 649 (850)
Q Consensus 571 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L 649 (850)
|+.+++.+| ++...+.+|.++++| + .+
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L---------------------------------------------------~~~l 279 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRL---------------------------------------------------AGTL 279 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTC---------------------------------------------------CEEE
T ss_pred CCEEECCcc-cceehHHHhhCChhc---------------------------------------------------cEEE
Confidence 999999998 776666777777666 6 78
Q ss_pred EcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeC
Q 048351 650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL 699 (850)
Q Consensus 650 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 699 (850)
++.+ +++...+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8877 777677789999999999999999999888889999999998864
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=5.1e-15 Score=139.10 Aligned_cols=127 Identities=24% Similarity=0.216 Sum_probs=106.8
Q ss_pred CCccEEEccCCCCC-CCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351 448 QNLVYLDLSSNLLS-GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 526 (850)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57889999999987 77888888899999999999999865 6788889999999999999877888888899999999
Q ss_pred cccccceeecc--hhHHhcCCCCCEEEccCCccccccC---cCcCCCCCcceeeccc
Q 048351 527 LEENSISGNIP--AWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILDLSL 578 (850)
Q Consensus 527 L~~N~l~~~ip--~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 578 (850)
+++|++++ +| ..+. .+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~-~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKD-LSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCS-HHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCC-hHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999884 43 5555 68899999999999987665 4678888999998864
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=143.38 Aligned_cols=129 Identities=26% Similarity=0.318 Sum_probs=98.4
Q ss_pred CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccC
Q 048351 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYN 602 (850)
Q Consensus 523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 602 (850)
+.+++++|.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|+|++|+|++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 35666666665 666543 246777777777776 566777777888888888888877666666655555
Q ss_pred ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351 603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG 682 (850)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 682 (850)
++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus 81 --------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 81 --------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp --------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred --------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 778888888888888888888899999999999987
Q ss_pred CCCccccccCCCCeeeCCCCcCccc
Q 048351 683 YITPKIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 683 ~ip~~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
..+..|..+++|+.|+|++|.+...
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 117 VPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eChhhhhcCccccEEEeCCCCeecC
Confidence 7667788899999999999988753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.4e-14 Score=140.40 Aligned_cols=133 Identities=23% Similarity=0.222 Sum_probs=103.5
Q ss_pred cCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351 522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY 601 (850)
Q Consensus 522 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 601 (850)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 356666667666 566543 3578888888888876666667888888888888888886655555555544
Q ss_pred CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 681 (850)
+.|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus 79 ---------------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 79 ---------------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ---------------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 78899999998777777888999999999999999
Q ss_pred cCCCccccccCCCCeeeCCCCcCcccCc
Q 048351 682 GYITPKIGQLQSLDFLDLSRNQFSGGIP 709 (850)
Q Consensus 682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 709 (850)
+..+..+..+++|++|++++|.+++..|
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 114 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7766677889999999999999987665
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=3.6e-16 Score=154.75 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=114.3
Q ss_pred hcCCCCcCeeccccccceeecch------hHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccc
Q 048351 516 LKNFTHLRVVALEENSISGNIPA------WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCF 589 (850)
Q Consensus 516 l~~l~~L~~L~L~~N~l~~~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 589 (850)
+.....++.++++.+.++|.+|. .+. .+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 44455666667777777666665 565 58888888888888876 56 7788888888888888887 445433
Q ss_pred cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcccc
Q 048351 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG 669 (850)
Q Consensus 590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 669 (850)
..++ .|+.|+|++|++++ +| .+..+++
T Consensus 90 ~~~~---------------------------------------------------~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 90 AVAD---------------------------------------------------TLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHH---------------------------------------------------HCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred hcCC---------------------------------------------------cCCEEECcCCcCCc-CC-ccccCCC
Confidence 3333 34788888888885 45 6888888
Q ss_pred CCeEecCCCcCccCCC-ccccccCCCCeeeCCCCcCcccCccc----------ccCCCCCCEEEcCCCcCc
Q 048351 670 LIGLNLSRNNLTGYIT-PKIGQLQSLDFLDLSRNQFSGGIPSS----------LSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 670 L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 729 (850)
|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9999999998886432 46888888999999999888776653 77888888887 56554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=5.7e-14 Score=135.96 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=57.1
Q ss_pred cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc--cccccCCCCeeeCCCCcCcccCcc----cccCCCCCCE
Q 048351 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP--KIGQLQSLDFLDLSRNQFSGGIPS----SLSQVNRLSV 720 (850)
Q Consensus 647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~ 720 (850)
+.|+|++|++++..|..++.+++|+.|+|++|+++. +|. .+..+++|+.|++++|.++ .+|. .+..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 667777777775544555777777777777777753 444 6777777888888888777 3444 3777788888
Q ss_pred EEcCCCcCc
Q 048351 721 MDLSHNNLS 729 (850)
Q Consensus 721 L~ls~N~l~ 729 (850)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 888877665
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1.2e-12 Score=143.51 Aligned_cols=220 Identities=9% Similarity=0.059 Sum_probs=150.5
Q ss_pred CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL 527 (850)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 527 (850)
.+|+.+.+.. .++..-+.+|.+|++|+.+++.+|+++......|. +.+|+.+.+.++ ++..-...|.+|++|+.+++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 3577787775 56555667788888888888888887755555555 578888888744 66566677888888888888
Q ss_pred ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc-----ccCCccccCcccCccccccC
Q 048351 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS-----GNIPKCFNNFTAMTQERSYN 602 (850)
Q Consensus 528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~ 602 (850)
.+| ++ .|+...|.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+. ...+.+|.++++
T Consensus 234 ~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~-------- 301 (401)
T 4fdw_A 234 PEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK-------- 301 (401)
T ss_dssp CTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT--------
T ss_pred CCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc--------
Confidence 765 44 677776654 67888888 44566566677788888888888777664 222333443333
Q ss_pred ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351 603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG 682 (850)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 682 (850)
|+.++|. +.++..-...|.++++|+.++|..| ++.
T Consensus 302 -------------------------------------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 302 -------------------------------------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp -------------------------------------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred -------------------------------------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 3667776 3466555667777788888888554 665
Q ss_pred CCCccccccCCCCeeeCCCCcCcccCcccccCCC-CCCEEEcCCCcC
Q 048351 683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN-RLSVMDLSHNNL 728 (850)
Q Consensus 683 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 728 (850)
.-+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 556677777 788888888877766667777764 667777766554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.2e-13 Score=133.61 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=105.9
Q ss_pred CCCCccEEEccCCCCCCCCCcccccC-CCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351 446 SGQNLVYLDLSSNLLSGKLPDCWLQF-NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524 (850)
Q Consensus 446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 524 (850)
.+.+|++|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34788999999999884 454 4444 4899999999999865 67888999999999999998665566688999999
Q ss_pred eccccccceeecch--hHHhcCCCCCEEEccCCccccccCcC----cCCCCCcceeecccccCc
Q 048351 525 VALEENSISGNIPA--WIGESLLNLVVLDLRSNRFYGKIPFQ----LCHLADIQILDLSLNNIS 582 (850)
Q Consensus 525 L~L~~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 582 (850)
|++++|+++ .+|. .+. .+++|++|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999996 7776 555 6899999999999998 45553 788999999999999875
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2e-13 Score=131.12 Aligned_cols=88 Identities=22% Similarity=0.205 Sum_probs=80.6
Q ss_pred ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725 (850)
Q Consensus 646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 725 (850)
++.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 37899999999988899999999999999999999988777889999999999999999988888899999999999999
Q ss_pred CcCcccCC
Q 048351 726 NNLSGKIP 733 (850)
Q Consensus 726 N~l~g~iP 733 (850)
|++++..+
T Consensus 112 N~~~c~c~ 119 (170)
T 3g39_A 112 NPWDCACS 119 (170)
T ss_dssp SCBCTTBG
T ss_pred CCCCCCch
Confidence 99997755
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.1e-15 Score=151.25 Aligned_cols=132 Identities=23% Similarity=0.236 Sum_probs=79.2
Q ss_pred hhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCccc
Q 048351 515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA 594 (850)
Q Consensus 515 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 594 (850)
.+..+++|++|++++|+++ .+| .+. .+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l-- 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL-- 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH--
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC--
Confidence 5555666666666666665 355 333 4566666666666665 445555555666666666666654 22 22222
Q ss_pred CccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh-hhhhccccCCeE
Q 048351 595 MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP-EEIMDLVGLIGL 673 (850)
Q Consensus 595 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 673 (850)
+.|+.|++++|++++..+ ..+..+++|+.|
T Consensus 115 -------------------------------------------------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 115 -------------------------------------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp -------------------------------------------------HHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred -------------------------------------------------CCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 223667777777764322 466777777777
Q ss_pred ecCCCcCccCCCcc----------ccccCCCCeeeCCCCcCc
Q 048351 674 NLSRNNLTGYITPK----------IGQLQSLDFLDLSRNQFS 705 (850)
Q Consensus 674 ~Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~ 705 (850)
++++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777777665542 67777888776 56655
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.9e-13 Score=128.22 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=78.0
Q ss_pred ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725 (850)
Q Consensus 646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 725 (850)
|+.|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|.++++|++|||++|+|++..+..|..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 37899999999988899999999999999999999987777788999999999999999987777799999999999999
Q ss_pred CcCcccCC
Q 048351 726 NNLSGKIP 733 (850)
Q Consensus 726 N~l~g~iP 733 (850)
|++.+..+
T Consensus 115 N~~~c~~~ 122 (174)
T 2r9u_A 115 NPWDCECR 122 (174)
T ss_dssp SCBCTTBG
T ss_pred CCcccccc
Confidence 99986543
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=3.8e-12 Score=139.67 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=134.9
Q ss_pred CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528 (850)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 528 (850)
+|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .+...-+.+|.++++|+.+++.+|+++......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4666666554 443444455553 466666654 44444445566666666666666666543333443 4566666665
Q ss_pred cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351 529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608 (850)
Q Consensus 529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 608 (850)
++ ++ .|+...|.++++|+.+++..| ++..-..+|.+ .+|+.+++ .+.++...+.+|.+++
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~--------------- 271 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCP--------------- 271 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCT---------------
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCC---------------
Confidence 33 44 555555555566666666553 33333444444 45666655 2334433344444444
Q ss_pred ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC-----CCChhhhhccccCCeEecCCCcCccC
Q 048351 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG-----GEVPEEIMDLVGLIGLNLSRNNLTGY 683 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~ 683 (850)
+|+.+++.+|.+. ...+..|.++++|+.++|. +.++..
T Consensus 272 ------------------------------------~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I 314 (401)
T 4fdw_A 272 ------------------------------------ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL 314 (401)
T ss_dssp ------------------------------------TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred ------------------------------------CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence 4477777776654 3556788889999999998 457766
Q ss_pred CCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351 684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729 (850)
Q Consensus 684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 729 (850)
....|.++++|+.++|..| ++...+..|.++ +|+.+++++|.+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 7778999999999999655 777777889988 8999999988664
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.3e-12 Score=125.25 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=87.0
Q ss_pred CCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD 626 (850)
Q Consensus 547 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (850)
.+++++++|.++ .+|..+ .++|++|+|++|+|++..|..|.++++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 467788888777 356554 3678888888888887777777666655
Q ss_pred EEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351 627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706 (850)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 706 (850)
++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.++.
T Consensus 57 --------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 57 --------------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred --------------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 788888888887777778889999999999999998777779999999999999999886
Q ss_pred cCc
Q 048351 707 GIP 709 (850)
Q Consensus 707 ~~p 709 (850)
..+
T Consensus 117 ~c~ 119 (170)
T 3g39_A 117 ACS 119 (170)
T ss_dssp TBG
T ss_pred Cch
Confidence 543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.2e-12 Score=123.06 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=81.9
Q ss_pred CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeE
Q 048351 548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627 (850)
Q Consensus 548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (850)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------- 59 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------------------- 59 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence 56777777775 5555553 677888888888877777666666555
Q ss_pred EEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG 707 (850)
Q Consensus 628 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 707 (850)
+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 60 -------------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 -------------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred -------------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7788888888876666678888899999999999876666688899999999999988854
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=8.6e-14 Score=151.25 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=30.9
Q ss_pred cEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccC----CCccccccCCCCeeeCCCCcCcccCcccc
Q 048351 647 KSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGY----ITPKIGQLQSLDFLDLSRNQFSGGIPSSL 712 (850)
Q Consensus 647 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 712 (850)
++|||++|++++. ++..+...++|+.|+|++|.+++. ++..+...++|++|||++|.|+......+
T Consensus 186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 4555555555432 233344445555555555555432 22223334555555555555554433333
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=1.7e-10 Score=127.03 Aligned_cols=217 Identities=10% Similarity=0.095 Sum_probs=126.6
Q ss_pred CCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351 446 SGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525 (850)
Q Consensus 446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 525 (850)
.+++|+.+.+.++. ......+|.++.+|+.+++..+ ++......|.++..|+.+.+..+... +...+....+|+.+
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNI 235 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEE
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceE
Confidence 44667777776543 2244556777777777777665 44344556677777777776665443 23334445667777
Q ss_pred ccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605 (850)
Q Consensus 526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 605 (850)
.+..+ ++ .+....+.++..|+.+.+..+... .....|..+..++.+....+.+. ...|..+.+|
T Consensus 236 ~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L---------- 299 (394)
T 4fs7_A 236 IIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSL---------- 299 (394)
T ss_dssp EECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTC----------
T ss_pred EECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccc----------
Confidence 66543 22 455555556777777777666443 44556777777777766554321 2234344333
Q ss_pred cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
+.+.+..+ ++..-...|.++++|+.++|..+ ++..-.
T Consensus 300 -----------------------------------------~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 300 -----------------------------------------TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp -----------------------------------------CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred -----------------------------------------cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 44444333 33334455666666777766543 554445
Q ss_pred ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
.+|.++++|+.+++..| ++......|.++++|+.+++..+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 56666777777777655 55555566777777777766543
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=3.3e-10 Score=124.63 Aligned_cols=287 Identities=12% Similarity=0.022 Sum_probs=179.0
Q ss_pred ccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCc
Q 048351 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF 426 (850)
Q Consensus 347 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~ 426 (850)
|.++.+|+.+.+..+ ++......|.. +.+|+.+++.++ ++......| ..+ ..|+.+.+..+ ++
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF-~~c-~~L~~i~~p~~------------l~ 129 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFEN-CSKLEIINIPDS-VKMIGRCTF-SGC-YALKSILLPLM------------LK 129 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTT-CTTCCEECCCTT-CCEECTTTT-TTC-TTCCCCCCCTT------------CC
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhC-CCCCcEEEeCCC-ceEccchhh-ccc-ccchhhcccCc------------ee
Confidence 677888888888643 55444455544 357888888654 443333344 111 33333222211 11
Q ss_pred EEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC
Q 048351 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN 506 (850)
Q Consensus 427 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 506 (850)
.+ ...++..+. +....... .....-..+|.++++|+.+.+.++. .......|.++.+|+.+++..+
T Consensus 130 ~i-----------~~~aF~~~~-~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 130 SI-----------GVEAFKGCD-FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EE-----------CTTTTTTCC-CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred ee-----------cceeeeccc-ccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 11 111111222 22222222 1222334678889999999997654 3355567888899999998876
Q ss_pred ccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCC
Q 048351 507 NFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP 586 (850)
Q Consensus 507 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 586 (850)
++..-...|.++..|+.+.+.++... +....+ ...+|+.+.+..+ ++......+..+..|+.+.+..+... ...
T Consensus 196 -~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 196 -LKIIRDYCFAECILLENMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp -CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred -ceEeCchhhccccccceeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec
Confidence 55455678888999999888877543 444444 4678888888654 33344567788888999888776543 334
Q ss_pred ccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhc
Q 048351 587 KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD 666 (850)
Q Consensus 587 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 666 (850)
..|.++..+ +.+....+.+ ....|..
T Consensus 270 ~~F~~~~~l---------------------------------------------------~~~~~~~~~i---~~~~F~~ 295 (394)
T 4fs7_A 270 SLFYNCSGL---------------------------------------------------KKVIYGSVIV---PEKTFYG 295 (394)
T ss_dssp CTTTTCTTC---------------------------------------------------CEEEECSSEE---CTTTTTT
T ss_pred ccccccccc---------------------------------------------------ceeccCceee---ccccccc
Confidence 445544444 3333333322 2345777
Q ss_pred cccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 667 LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 667 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
+.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++......|.++++|+.+++..|
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 888999998765 66555678889999999999754 77667788999999999988766
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=5.6e-13 Score=144.85 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=28.1
Q ss_pred cccEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccCCCcccc
Q 048351 645 LVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYITPKIG 689 (850)
Q Consensus 645 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 689 (850)
.|+.|||++|.+++. ++..+...++|++|+|++|.|++.....+.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 346777777777643 334445567788888888887755444443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=2e-11 Score=132.08 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=42.3
Q ss_pred cccccccEEEcCC-CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCC
Q 048351 641 NTLGLVKSVDLSS-NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLS 719 (850)
Q Consensus 641 ~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 719 (850)
..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..+..|..++ |+
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 3344445555543 455444444455555555555555555544444445555555555555555444444444333 55
Q ss_pred EEEcCCCcCc
Q 048351 720 VMDLSHNNLS 729 (850)
Q Consensus 720 ~L~ls~N~l~ 729 (850)
+|++++|++.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 5555555444
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=3.2e-11 Score=130.50 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=92.1
Q ss_pred CEEEccCC-ccccccCcCcCCCCCcceeeccc-ccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEe
Q 048351 548 VVLDLRSN-RFYGKIPFQLCHLADIQILDLSL-NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFF 625 (850)
Q Consensus 548 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (850)
..++++++ .++ .+|. +..+++|+.|+|++ |+|++..|..|.++++|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------ 58 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------ 58 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC------------------------------
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC------------------------------
Confidence 35688888 888 4777 99999999999996 99998877777776666
Q ss_pred eEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351 626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705 (850)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 705 (850)
+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus 59 ---------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 59 ---------------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ---------------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ---------------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8999999999999999999999999999999999987777777766 999999999998
Q ss_pred cc
Q 048351 706 GG 707 (850)
Q Consensus 706 ~~ 707 (850)
..
T Consensus 117 c~ 118 (347)
T 2ifg_A 117 CS 118 (347)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=1.2e-07 Score=104.04 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=27.5
Q ss_pred hhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc
Q 048351 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN 727 (850)
Q Consensus 661 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 727 (850)
..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.+|.... ..+.....|+.+.+..|.
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 344555555555555433 443334455666666666665554331 234445555555555443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.89 E-value=1.1e-07 Score=104.44 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=28.3
Q ss_pred hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 663 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
.|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++......|.++++|+.+++.+|
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 4444444444444432 33233344555555555555432 33333444555555555555444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1.2e-09 Score=117.56 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=49.8
Q ss_pred cccccEEEcCCCCCCCCChhhhh---ccccCCeEecCCCcCccC----CCccccccCCCCeeeCCCCcCcccCcccccC-
Q 048351 643 LGLVKSVDLSSNKLGGEVPEEIM---DLVGLIGLNLSRNNLTGY----ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQ- 714 (850)
Q Consensus 643 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~- 714 (850)
++.|+.|+|++|.+++..+..+. .+++|+.|+|+.|.+++. ++..+.++++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 44567777777777654444443 366777777777777653 2333455677777777777776544333433
Q ss_pred CCCCCEEEcCCCc
Q 048351 715 VNRLSVMDLSHNN 727 (850)
Q Consensus 715 l~~L~~L~ls~N~ 727 (850)
+ ...+++++|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2446666655
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=6.4e-09 Score=111.78 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=106.6
Q ss_pred ccCCCCCEEEcCCCccc---------ccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchh
Q 048351 469 LQFNMLRILNLANNNFS---------GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW 539 (850)
Q Consensus 469 ~~l~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~ 539 (850)
..+++|+.|.+..+... +.+...+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence 34556666666543221 112233445677777777776311 2232 32 677888888777765333333
Q ss_pred HHh-cCCCCCEEEccC--Cccccc-----cCcCc--CCCCCcceeecccccCcccCCccccCcccCccccccCccccccc
Q 048351 540 IGE-SLLNLVVLDLRS--NRFYGK-----IPFQL--CHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFS 609 (850)
Q Consensus 540 ~~~-~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 609 (850)
+.. .+++|+.|+|+. |...+. +...+ ..+++|++|+|++|.+.+..+..+...
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------- 275 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------- 275 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-----------------
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-----------------
Confidence 331 477888888753 221111 01112 247889999999888875433222111
Q ss_pred cccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccCCC
Q 048351 610 YAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYIT 685 (850)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip 685 (850)
..++.|++|||+.|.+++. ++..+..+++|+.|+|++|.++...-
T Consensus 276 -------------------------------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 276 -------------------------------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp -------------------------------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred -------------------------------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 1234568999999999864 34445678999999999998875433
Q ss_pred ccccc-cCCCCeeeCCCCc
Q 048351 686 PKIGQ-LQSLDFLDLSRNQ 703 (850)
Q Consensus 686 ~~l~~-l~~L~~L~Ls~N~ 703 (850)
..+.. + ...+|++.++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 33433 2 3668999887
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.61 E-value=2.5e-06 Score=92.94 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=22.9
Q ss_pred cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCC
Q 048351 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLS 700 (850)
Q Consensus 647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 700 (850)
+.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 44444444444333344444444444444432 332333344444445444443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=1.7e-09 Score=110.16 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=40.8
Q ss_pred CCCCCCCEEeCCCCCCCC--CCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCC
Q 048351 145 GSLSKLEYLDLFAASFSG--PIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSK 211 (850)
Q Consensus 145 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 211 (850)
.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++........+..+ +|++|+|++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 356777777777777776 3445566677777777777765433222333333 66666666666654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=8.4e-06 Score=88.79 Aligned_cols=154 Identities=9% Similarity=0.007 Sum_probs=100.2
Q ss_pred hcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccC
Q 048351 516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595 (850)
Q Consensus 516 l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 595 (850)
+..+..+..+.+....- .+....+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..+|.++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 33444555544443322 222333335667777776544 33344556667777777777554 433333444444443
Q ss_pred ccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEec
Q 048351 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675 (850)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 675 (850)
+.+++..+ ++......|.++++|+.+++
T Consensus 266 ---------------------------------------------------~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 266 ---------------------------------------------------KTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp ---------------------------------------------------CEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred ---------------------------------------------------cccccccc-ceeccccccccccccccccc
Confidence 55666433 44445567889999999999
Q ss_pred CCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351 676 SRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726 (850)
Q Consensus 676 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 726 (850)
.++.++..-...|.++++|+.++|..+ ++......|.++++|+.+.+..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 999998777789999999999999765 77677788999999998877543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=4.4e-08 Score=94.91 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=56.5
Q ss_pred hhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEc--cC
Q 048351 218 EVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTL--SD 295 (850)
Q Consensus 218 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~L--s~ 295 (850)
.+...++|++|+|++|.+...........+... ++|++|+|++|.|+...... +...+...++|++|+| ++
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~~g~~~------l~~~L~~n~~L~~L~L~~~~ 132 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGILA------LVEALQSNTSLIELRIDNQS 132 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHHHH------HHHGGGGCSSCCEEECCCCS
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCHHHHHH------HHHHHHhCCCceEEEecCCC
Confidence 344445555555555554432111111122222 56777777777776532222 1223455667888888 77
Q ss_pred CcCCcc----cchhhhcCCCCcEEEccCCccc
Q 048351 296 NELDGE----IPKFFQNMFKLEGLSLRGNSLE 323 (850)
Q Consensus 296 N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 323 (850)
|.+... +...+...+.|++|+|++|.+.
T Consensus 133 N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 133 QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 888754 3445566788999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=3.6e-07 Score=92.94 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=30.4
Q ss_pred cccccEEEcCCCCCCC--CChhhhhccccCCeEecCCCcCccCCCccccccC--CCCeeeCCCCcCcccC
Q 048351 643 LGLVKSVDLSSNKLGG--EVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ--SLDFLDLSRNQFSGGI 708 (850)
Q Consensus 643 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~~ 708 (850)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 3444555555555554 2334444555555555555555543 2233333 4555555555554433
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=6.4e-08 Score=93.73 Aligned_cols=128 Identities=10% Similarity=0.117 Sum_probs=78.0
Q ss_pred hhhcCCCCCcEEEccCC-CCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccC
Q 048351 217 QEVDKIPSLKTLYLEQC-DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295 (850)
Q Consensus 217 ~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~ 295 (850)
..+...++|++|+|++| .+...........+... ++|++|+|++|++.......+ .+.+...++|++|+|++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l------~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFAL------AEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHH------HHHHHHCSSCCEEECCS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHH------HHHHHhCCCcCEEECcC
Confidence 34555666666666666 55432211111233344 789999999999875433222 12234456899999999
Q ss_pred CcCCcc----cchhhhcCCCCcEEEc--cCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351 296 NELDGE----IPKFFQNMFKLEGLSL--RGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364 (850)
Q Consensus 296 N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (850)
|.|... +...+...+.|++|+| ++|.+....... +...+...++|+.|++++|.+.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~-------------l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME-------------IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH-------------HHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH-------------HHHHHHhCCCcCEEeccCCCCC
Confidence 999854 4556677788999999 888887543221 1122444556666666666553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=4.1e-06 Score=78.85 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=46.1
Q ss_pred CCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccC----CCccEEeCCCCC-CCCCcchhhhhcCC
Q 048351 148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQL----FSLRYLDLSSCN-LSKSTDWLQEVDKI 222 (850)
Q Consensus 148 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l 222 (850)
.+|++||++++.++..--..+..+++|++|+|++|..++......++.+ ++|++|+|++|. ++.. -...+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--GIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--HHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--HHHHHhcC
Confidence 3566666666655544334456666666666666653333333334443 356666666653 5442 23445556
Q ss_pred CCCcEEEccCCC
Q 048351 223 PSLKTLYLEQCD 234 (850)
Q Consensus 223 ~~L~~L~L~~n~ 234 (850)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 666666666654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=7e-06 Score=77.22 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=68.3
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCC-CCCCCCcccCCC----CCCcEEEccCCCCCCCCCccccccCC
Q 048351 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAAS-FSGPIPPLLGNL----SRLQYLSLGYNKLLRAGNLDWISQLF 197 (850)
Q Consensus 123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~l~~~~~~~~l~~l~ 197 (850)
.+|++||++++.++...+ ..+..+++|++|+|++|. +++.--..++.+ ++|++|+|++|.-++......+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 479999999999886423 456889999999999995 665444456654 47999999999644444556688999
Q ss_pred CccEEeCCCCC-CCC
Q 048351 198 SLRYLDLSSCN-LSK 211 (850)
Q Consensus 198 ~L~~L~Ls~n~-l~~ 211 (850)
+|++|+++++. ++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 99999999985 554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=6.4e-05 Score=72.08 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=67.1
Q ss_pred CCccEEeCCCC-CCCCC--cchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhh
Q 048351 197 FSLRYLDLSSC-NLSKS--TDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF 273 (850)
Q Consensus 197 ~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~ 273 (850)
+.|++|+|++| .|... ..+...+..-+.|+.|+|++|.+...........+... +.|++|+|++|.|+......+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N-~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC-CccCeEecCCCcCCHHHHHHHH
Confidence 34444444443 33321 12334455556666666666666533222122223333 6788888888887754333322
Q ss_pred cCCCCCCCCCCCCCCcEEEccCC---cCCc----ccchhhhcCCCCcEEEccCCccc
Q 048351 274 NVSSIPDAPGPMISLRTLTLSDN---ELDG----EIPKFFQNMFKLEGLSLRGNSLE 323 (850)
Q Consensus 274 ~l~~ip~~l~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~L~~N~l~ 323 (850)
+.+..-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+.
T Consensus 120 ------~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 ------RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp ------HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred ------HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23444556888998865 3332 24456777889999999887654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.0011 Score=59.28 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=40.2
Q ss_pred eEecCCCcCc-cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351 672 GLNLSRNNLT-GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730 (850)
Q Consensus 672 ~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 730 (850)
.++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 23444333 467888888888887777778888888888888888764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00017 Score=69.07 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=23.9
Q ss_pred ccccCCCCCCEEeCCCC-CCCCC---CCCcccCCCCCCCEEeCCCCCCC
Q 048351 117 PALLKLHYLRHLDLSFN-NFSGS---QIPMFIGSLSKLEYLDLFAASFS 161 (850)
Q Consensus 117 ~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~ 161 (850)
..+.+-+.|++|+|++| .|... .+-..+..-+.|++|+|++|.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34455667777777774 55421 01223344455566666555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0032 Score=56.25 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=48.5
Q ss_pred cEEEcCCCCCC-CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351 647 KSVDLSSNKLG-GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705 (850)
Q Consensus 647 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 705 (850)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57999999997 46665433 36999999999999887888999999999999999886
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=34.09 E-value=20 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=11.4
Q ss_pred ehhhHHHHHHHHHHHHHHHh
Q 048351 792 GFFVTLILGFIVGFWGVCGT 811 (850)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~ 811 (850)
..++++++|.++++.++++.
T Consensus 11 GaIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHH
Confidence 34566777776665544443
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.91 E-value=25 Score=23.97 Aligned_cols=12 Identities=0% Similarity=0.052 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHH
Q 048351 793 FFVTLILGFIVG 804 (850)
Q Consensus 793 ~~~~~~~~~~~~ 804 (850)
+..+++.|+++.
T Consensus 13 IA~gVVgGv~~~ 24 (44)
T 2ks1_B 13 IATGMVGALLLL 24 (44)
T ss_dssp STHHHHHHHHHH
T ss_pred EEeehhHHHHHH
Confidence 344444444443
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.97 E-value=65 Score=26.38 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=6.1
Q ss_pred ccCCCCCCcEEEcc
Q 048351 167 LLGNLSRLQYLSLG 180 (850)
Q Consensus 167 ~l~~l~~L~~L~Ls 180 (850)
+|.+|++|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNTVIREITVQ 28 (100)
T ss_dssp TTTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC
Confidence 34444444444443
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.00 E-value=1.3e+02 Score=24.50 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=24.4
Q ss_pred CCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccC
Q 048351 460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHH 505 (850)
Q Consensus 460 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 505 (850)
++.+-..+|.+|++|+.+.+-.+ ++..-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334455666666666666543 3323344566666666666554
No 169
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.06 E-value=32 Score=18.70 Aligned_cols=10 Identities=40% Similarity=1.371 Sum_probs=7.0
Q ss_pred CCCccccceE
Q 048351 67 KDCCNWRGVR 76 (850)
Q Consensus 67 ~~~c~w~gv~ 76 (850)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3468999864
Done!