BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048354
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 210/438 (47%), Gaps = 85/438 (19%)
Query: 1 SSGELLFDTSPNASSTDSVLVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQI 60
S+ +LFD+S L+F DQ++QLS+ LPS +++YGLG+H + ++ + K
Sbjct: 146 SNNRVLFDSSIGP------LLFADQFLQLSTRLPS--TNVYGLGEHVHQQYRHDMNWKTW 197
Query: 61 TLWXXXXXXXXXXXXLYGAHPFYIDLRSPNGTTHGVLLLNSNGMDVVYT-GDRITFKVIG 119
++ LYGA F++ L +G + GV L+NSN M+VV IT++ IG
Sbjct: 198 PIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAITYRTIG 257
Query: 120 GIIDLYFFAG--------------------------FHQCRYGYKNVSYLEGVVAGYANA 153
GI+D Y F G FH RY Y + + VV A
Sbjct: 258 GILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRAA 317
Query: 154 SIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETN 213
+P +V DIDYMD +DFT D ++F P FV+ LH NGQK V+IVDP IS N ++
Sbjct: 318 QLPYDVQHADIDYMDERRDFTYDSVDFKGFP--EFVNELHNNGQKLVIIVDPAISNNSSS 375
Query: 214 DT----FDRGMKADIYI-KREGV-PYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTL 267
+DRG I++ +GV P G+VW G FPD+ NP +W E +LF N +
Sbjct: 376 SKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQV 435
Query: 268 ASRPVFY--------------------FDDPPY--KISNG-------------GGGKQIN 292
++ ++PP+ +I +G GKQ +
Sbjct: 436 EFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYD 495
Query: 293 DRTFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDD 351
HNLYG A AT A V KR FIL+RSTF SGK+AAH GDN A WDD
Sbjct: 496 ------IHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDD 549
Query: 352 LAYSILAILKVGALVKPL 369
L +SI +L+ P+
Sbjct: 550 LRWSIPGVLEFNLFGIPM 567
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 210/438 (47%), Gaps = 85/438 (19%)
Query: 1 SSGELLFDTSPNASSTDSVLVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQI 60
S+ +LFD+S L+F DQ++QLS+ LPS +++YGLG+H + ++ + K
Sbjct: 146 SNNRVLFDSSIGP------LLFADQFLQLSTRLPS--TNVYGLGEHVHQQYRHDMNWKTW 197
Query: 61 TLWXXXXXXXXXXXXLYGAHPFYIDLRSPNGTTHGVLLLNSNGMDVVYT-GDRITFKVIG 119
++ LYGA F++ L +G + GV L+NSN M+VV IT++ IG
Sbjct: 198 PIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAITYRTIG 257
Query: 120 GIIDLYFFAG--------------------------FHQCRYGYKNVSYLEGVVAGYANA 153
GI+D Y F G FH RY Y + + VV A
Sbjct: 258 GILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRAA 317
Query: 154 SIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETN 213
+P +V DIDYMD +DFT D ++F P FV+ LH NGQK V+IVDP IS N ++
Sbjct: 318 QLPYDVQHADIDYMDERRDFTYDSVDFKGFP--EFVNELHNNGQKLVIIVDPAISNNSSS 375
Query: 214 DT----FDRGMKADIYI-KREGV-PYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTL 267
+DRG I++ +GV P G+VW G FPD+ NP +W E +LF N +
Sbjct: 376 SKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQV 435
Query: 268 ASRPVFY--------------------FDDPPY--KISNG-------------GGGKQIN 292
++ ++PP+ +I +G GKQ +
Sbjct: 436 EFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYD 495
Query: 293 DRTFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDD 351
HNLYG A AT A V KR FIL+RSTF SGK+AAH GDN A WDD
Sbjct: 496 ------IHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDD 549
Query: 352 LAYSILAILKVGALVKPL 369
L +SI +L+ P+
Sbjct: 550 LRWSIPGVLEFNLFGIPM 567
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 197/433 (45%), Gaps = 74/433 (17%)
Query: 1 SSGELLFDTSPNASSTDSVLVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQI 60
S+G+ LFDTS LV+ DQY+Q+S+ LPS +YG+G+ K F+ K
Sbjct: 174 SNGKTLFDTSIGP------LVYSDQYLQISARLPSDY--IYGIGEQVHKRFRHDLSWKTW 225
Query: 61 TLWXXXXXXXXXXXXLYGAHPFYIDLRSPNGTTHGVLLLNSNGMDV-VYTGDRITFKVIG 119
++ LYG F++ + +G + GV L+NSN M++ + +T++V G
Sbjct: 226 PIFTRDQLPGDNNNNLYGHQTFFMCIEDTSGKSFGVFLMNSNAMEIFIQPTPIVTYRVTG 285
Query: 120 GIIDLYFFAG--------------------------FHQCRYGYKNVSYLEGVVAGYANA 153
GI+D Y G F R+ YK++ ++ VV A
Sbjct: 286 GILDFYILLGDTPEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNYKSLDVVKEVVRRNREA 345
Query: 154 SIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE-- 211
IP + TDIDYM+ KDFT D + F + + FV +LH +GQKYV+I+DP IS
Sbjct: 346 GIPFDTQVTDIDYMEDKKDFTYDQVAF--NGLPQFVQDLHDHGQKYVIILDPAISIGRRA 403
Query: 212 ---TNDTFDRGMKADIYIKRE--GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT 266
T T++RG ++I P G+VW G +PDF NP +W E +F
Sbjct: 404 NGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDWWANECSIFHQE 463
Query: 267 LASRPVFY-FDDPPYKISNGGGGKQINDRTFPA--------------------------- 298
+ ++ ++ I G +N +P
Sbjct: 464 VQYDGLWIDMNEVSSFIQGSTKGCNVNKLNYPPFTPDILDKLMYSKTICMDAVQNWGKQY 523
Query: 299 -SHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSI 356
H+LYG A AT A+ V KR FIL+RSTF SG++AAH GDN A W+ + +SI
Sbjct: 524 DVHSLYGYSMAIATEQAVQKVFPNKRSFILTRSTFAGSGRHAAHWLGDNTASWEQMEWSI 583
Query: 357 LAILKVGALVKPL 369
+L+ PL
Sbjct: 584 TGMLEFSLFGIPL 596
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 171 bits (433), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 126/440 (28%), Positives = 192/440 (43%), Gaps = 107/440 (24%)
Query: 20 LVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQITLWXXXXXXXXXXXXLYGA 79
F D +I++S+ LPS+ LYG G+ ++++ + ++ YG
Sbjct: 162 FTFSDMFIRISTRLPSKY--LYGFGETEHRSYRRDLEWHTWGMFSRDQPPGYKKNS-YGV 218
Query: 80 HPFYIDLRSPNGTTHGVLLLNSNGMDVVYTG-DRITFKVIGGIIDLYFFAG--------- 129
HP+Y+ L +G+ HGVLLLNSN MDV + +T++ GG++D Y F G
Sbjct: 219 HPYYMGLEE-DGSAHGVLLLNSNAMDVTFQPLPALTYRTTGGVLDFYVFLGPTPELVTQQ 277
Query: 130 -----------------FHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKD 172
F CRYGY+N S + + A IP +V ++DIDYM+ D
Sbjct: 278 YTELIGRPVMVPYWSLGFQLCRYGYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLD 337
Query: 173 FTLDP--INFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETN--DTFDRGMKADIYIK- 227
FTL P FP ++ + +G + ++I+DP IS NET F RG++ D++IK
Sbjct: 338 FTLSPKFAGFPA-----LINRMKADGMRVILILDPAISGNETQPYPAFTRGVEDDVFIKY 392
Query: 228 -REGVPYKGKVWA---------------------GDVYFPDFLNPAIETFWEGEI-KLFR 264
+G GKVW V FPDF + +W+ EI +L+
Sbjct: 393 PNDGDIVWGKVWPDFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNSTAKWWKREIEELYN 452
Query: 265 NTLASRPVFYFD---------------------------DPPYKISNGGGGKQINDRTFP 297
N FD PPY + ++ +T
Sbjct: 453 NPQNPERSLKFDGMWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPHLESRDRGLSSKTLC 512
Query: 298 AS----------------HNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAAHL 341
HNLYG + + T+ A+ VTG+R +++RSTF SSG++A H
Sbjct: 513 MESQQILPDGSLVQHYNVHNLYGWSQTRPTYEAVQEVTGQRGVVITRSTFPSSGRWAGHW 572
Query: 342 TGDNAARWDDLAYSILAILK 361
GDN A WD L SI+ +++
Sbjct: 573 LGDNTAAWDQLKKSIIGMME 592
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 123/283 (43%), Gaps = 55/283 (19%)
Query: 116 KVIG-GIIDLYFFAGFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFT 174
+VIG I F GF Q RYGY V GY IP+++++ DIDYM +KDFT
Sbjct: 152 RVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
Query: 175 LDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPY 233
++ NFP P FV + + + I+D G+ + + ++ G+K + + KRE G +
Sbjct: 212 VNEKNFPDFP--EFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDF 269
Query: 234 KGKVWAGDVYFPDFLNP----------------AIETFWE--GEIKLFRNT--LASRPVF 273
VW GD +FPD LNP IE FW E +F ++ LA F
Sbjct: 270 VAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEF 329
Query: 274 ---YFDDPPYKI-----------------------SNGGGGKQINDRTFPASHNLYGLLE 307
+ D KI N G K +D+ HNL+G
Sbjct: 330 AGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKV----HNLFGYNM 385
Query: 308 AKATHAALINVTGKRPFIL-SRSTFVSSGKYAAHLTGDNAARW 349
+A A + ++ F++ SRS+++ +Y GDN + W
Sbjct: 386 TRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWW 428
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 123/283 (43%), Gaps = 55/283 (19%)
Query: 116 KVIG-GIIDLYFFAGFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFT 174
+VIG I F GF Q RYGY V GY IP+++++ DIDYM +KDFT
Sbjct: 152 RVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
Query: 175 LDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPY 233
++ NFP P FV + + + I+D G+ + + ++ G+K + + KRE G +
Sbjct: 212 VNEKNFPDFP--EFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDF 269
Query: 234 KGKVWAGDVYFPDFLNP----------------AIETFWE--GEIKLFRNT--LASRPVF 273
VW GD +FPD LNP IE FW E +F ++ LA F
Sbjct: 270 VAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEF 329
Query: 274 ---YFDDPPYKI-----------------------SNGGGGKQINDRTFPASHNLYGLLE 307
+ D KI N G K +D+ HNL+G
Sbjct: 330 AGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKV----HNLFGYNM 385
Query: 308 AKATHAALINVTGKRPFIL-SRSTFVSSGKYAAHLTGDNAARW 349
+A A + ++ F++ SRS+++ +Y GDN + W
Sbjct: 386 TRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWW 428
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 49/280 (17%)
Query: 116 KVIG-GIIDLYFFAGFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFT 174
+VIG I F GF Q R+GY V GY IP+++++ DIDYM +KDFT
Sbjct: 152 RVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
Query: 175 LDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPY 233
++ NFP P FV + + + I+D G+ + + ++ G+K + + KRE G +
Sbjct: 212 VNEKNFPDFP--EFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDF 269
Query: 234 KGKVWAGDVYFPDFLNPAIETFWEGE---------IKLFRNTLASRPVFYFDDPPYKISN 284
VW GD +FPD LNP W G+ I+ F N + +FY + +
Sbjct: 270 VAAVWPGDTHFPDMLNPEARK-WFGDKYRFLIDQGIEGFWNAMNEPAIFYSSEGLAEAKE 328
Query: 285 GGG--GKQINDRTFPAS--------------------------------HNLYGLLEAKA 310
G K + P + HNL+G +A
Sbjct: 329 FAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRA 388
Query: 311 THAALINVTGKRPFIL-SRSTFVSSGKYAAHLTGDNAARW 349
A + ++ F++ SRS+++ +Y GDN + W
Sbjct: 389 AGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWW 428
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 123/283 (43%), Gaps = 55/283 (19%)
Query: 116 KVIG-GIIDLYFFAGFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFT 174
+VIG I F GF Q R+GY V GY IP+++++ DIDYM +KDFT
Sbjct: 152 RVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
Query: 175 LDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPY 233
++ NFP P FV + + + I+D G+ + + ++ G+K + + KRE G +
Sbjct: 212 VNEKNFPDFP--EFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDF 269
Query: 234 KGKVWAGDVYFPDFLNP----------------AIETFWE--GEIKLFRNT--LASRPVF 273
VW GD +FPD LNP IE FW E +F ++ LA F
Sbjct: 270 VAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEF 329
Query: 274 ---YFDDPPYKI-----------------------SNGGGGKQINDRTFPASHNLYGLLE 307
+ D KI N G K +D+ HNL+G
Sbjct: 330 AGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKV----HNLFGYNM 385
Query: 308 AKATHAALINVTGKRPFIL-SRSTFVSSGKYAAHLTGDNAARW 349
+A A + ++ F++ SRS+++ +Y GDN + W
Sbjct: 386 TRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWW 428
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 122/283 (43%), Gaps = 55/283 (19%)
Query: 116 KVIG-GIIDLYFFAGFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFT 174
+VIG I F GF Q R+GY V GY IP+++++ DIDYM +KDFT
Sbjct: 152 RVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFT 211
Query: 175 LDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPY 233
++ NFP P FV + + + I+D G+ + + ++ G+K + + KRE G +
Sbjct: 212 VNEKNFPDFP--EFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDF 269
Query: 234 KGKVWAGDVYFPDFLNP----------------AIETFWE--GEIKLFRNT--LASRPVF 273
VW GD +FPD LNP IE FW E +F ++ LA F
Sbjct: 270 VAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEF 329
Query: 274 ---YFDDPPYKI-----------------------SNGGGGKQINDRTFPASHNLYGLLE 307
+ D KI N G K +D+ HNL+G
Sbjct: 330 AGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKV----HNLFGYNM 385
Query: 308 AKATHAALINVTGKRPFIL-SRSTFVSSGKYAAHLTGDNAARW 349
+A A + ++ F++ SRS+++ +Y G N + W
Sbjct: 386 TRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGANKSWW 428
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 107/261 (40%), Gaps = 35/261 (13%)
Query: 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTF 188
G+ RY Y + +V + ++ DI YMD+YK FT P FP +P K
Sbjct: 178 GYMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFP-EP-KKL 235
Query: 189 VDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFL 248
+D LHK K + IVD GI ++ F GM I+ G + GK+W G +PDF
Sbjct: 236 IDELHKRNVKLITIVDHGIRVDQNYSPFLSGMGKFCEIE-SGELFVGKMWPGTTVYPDFF 294
Query: 249 NPAIETFWEGEIKLF------------------------RNTLASRPVFYFDDP-----P 279
+W G I + R+ L+S PV + DD P
Sbjct: 295 REDTREWWAGLISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLPVQFRDDRLVTTFP 354
Query: 280 YKISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAA 339
+ + GK++ N Y L EA AT FILSR+ + +YA
Sbjct: 355 DNVVHYLRGKRVKHEKV---RNAYPLYEAMATFKGFRTSHRNEIFILSRAGYAGIQRYAF 411
Query: 340 HLTGDNAARWDDLAYSILAIL 360
TGDN WDDL + +L
Sbjct: 412 IWTGDNTPSWDDLKLQLQLVL 432
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 124/302 (41%), Gaps = 59/302 (19%)
Query: 97 LLLNSNGMDVVYTGDRITFKVIG-GIIDLYFFAGFHQCRYGYKNVSYLEGVVAGYANASI 155
++ N D+V R VIG I F GF Q R+GY V GY I
Sbjct: 137 VIEGENAYDIVKQFRR----VIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHI 192
Query: 156 PLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDT 215
P++ ++ DIDY +KDFT++ NFP P FV + + I+D G+ + +
Sbjct: 193 PIDXIYXDIDYXQDFKDFTVNEKNFPDFP--EFVKEXKDQELRLIPIIDAGVKVEKGYEV 250
Query: 216 FDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNP----------------AIETFW-- 256
++ G+K + + KRE G + VW GD +FPD LNP IE FW
Sbjct: 251 YEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDXLNPEARKWFGDKYRFLIDQGIEGFWND 310
Query: 257 ---------------------------EGEIKLFRNTLASRPVFYFDDPPYKISNGGGGK 289
EG+I + + + + + + GK
Sbjct: 311 XNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAXQAKXKDIVNSPEDYKRFYHNVNGK 370
Query: 290 QI-NDRTFPASHNLYGLLEAKATHAALINVTGKRPFI-LSRSTFVSSGKYAAHLTGDNAA 347
+I +D+ HNL+G +A A + ++ F+ SRS+++ +Y GDN +
Sbjct: 371 KIRHDKV----HNLFGYNXTRAAGEAFERIDPEKRFLXFSRSSYIGXHRYGGIWXGDNKS 426
Query: 348 RW 349
W
Sbjct: 427 WW 428
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 50/262 (19%)
Query: 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVM-----WTDIDYMDAYKDFTLDPINFPVD 183
G R+GY++ + V Y PL+ + W D + D NFP
Sbjct: 265 GSFASRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHMGNLDWDKENFPT- 323
Query: 184 PMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKA--------------DIYIKRE 229
P+ D + G K V+I +P + T ++ +D +KA ++Y
Sbjct: 324 PLDMMAD-FKQQGVKTVLITEPFVLT--SSKRWDDAVKAKALAKDPQGQPKAFELYFGNG 380
Query: 230 GV----PYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNG 285
G+ +G W +Y D + +W G++ P + +D + I +
Sbjct: 381 GIIDVFSKEGSRWFSSIY-KDLSKQGVAGWW-GDL--------GEPEMHPEDTQHAIGDA 430
Query: 286 GGGKQINDRTFPASHNLYGLLEAKATHAALINVTGK-RPFILSRSTFVSSGKYAA-HLTG 343
HN YG A+ + ++ + RPFI+ R+ FV S +Y TG
Sbjct: 431 D-----------TVHNAYGHRWAEMLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIPWTG 479
Query: 344 DNAARWDDLAYSILAILKVGAL 365
D + W LA + L++ L
Sbjct: 480 DVSRTWGGLASQVELALQMSLL 501
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 98/255 (38%), Gaps = 42/255 (16%)
Query: 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--DAYKDFTLDPINFPVDPMK 186
GF Q R YK+ + + Y + IP++ + D Y DA+ D FP DP K
Sbjct: 436 GFWQSRERYKSSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFP-DP-K 493
Query: 187 TFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPD 246
VD +H + ++ V P T D + + + A ++ + K W G Y
Sbjct: 494 ALVDKVHAMNAQIMISVWPKFYP--TTDNY-KELNAKGFMFNRNLDEKNLDWIGKGYLNA 550
Query: 247 FLNP----AIETFWEGEIKLFRNTL-----------ASRPVFY----FDDPPYKIS---N 284
F +P A FW K R+ + A P + F+ + ++
Sbjct: 551 FYDPFSPEATAIFW----KQIRDKINVHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNAR 606
Query: 285 GGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAAHL-TG 343
G G + N P + +Y L KR FIL+RS F + + + +G
Sbjct: 607 GNGAEIFNAYAVPHAEGVY--------QGELATDGDKRSFILTRSGFGGIQRTGSAIWSG 658
Query: 344 DNAARWDDLAYSILA 358
D +RW D+ I A
Sbjct: 659 DIVSRWSDMKDQIAA 673
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 321 KRPFILSRSTFVSSGKYAAHLTGDNAARW 349
KRP ++ R+TF S ++ A L N RW
Sbjct: 311 KRPIMIHRATFGSIERFMALLIDSNEGRW 339
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 136 GYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFT 174
G N+S +E +V GY N + P E + D+D D + FT
Sbjct: 375 GENNIS-VEEIVEGYQNNNFPFEGLAVDVDMQDNLRVFT 412
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 199 YVVIVD--PGISTNETNDTFDRGMKADIYIKREGV----------PYKGKVWAGD 241
Y+V+ D PGI ++ FDRG + D +GV Y+GK+ AG+
Sbjct: 76 YIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,771,188
Number of Sequences: 62578
Number of extensions: 576718
Number of successful extensions: 1171
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 42
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)