Query 048354
Match_columns 395
No_of_seqs 168 out of 1379
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 100.0 1.9E-81 4.2E-86 665.1 37.5 362 20-395 57-466 (978)
2 PRK10658 putative alpha-glucos 100.0 1.2E-80 2.7E-85 649.8 37.0 351 25-395 147-533 (665)
3 KOG1066 Glucosidase II catalyt 100.0 2.8E-79 6E-84 608.7 22.1 362 25-394 207-634 (915)
4 KOG1065 Maltase glucoamylase a 100.0 1.2E-77 2.7E-82 615.0 26.4 381 1-394 152-569 (805)
5 COG1501 Alpha-glucosidases, fa 100.0 4.3E-76 9.3E-81 620.2 33.4 356 23-395 139-533 (772)
6 PRK10426 alpha-glucosidase; Pr 100.0 4.6E-74 1E-78 599.0 35.6 355 20-395 65-486 (635)
7 cd06600 GH31_MGAM-like This fa 100.0 1.1E-66 2.5E-71 505.1 22.5 248 129-395 12-265 (317)
8 cd06604 GH31_glucosidase_II_Ma 100.0 5.5E-66 1.2E-70 505.5 23.6 263 129-395 12-287 (339)
9 cd06603 GH31_GANC_GANAB_alpha 100.0 9.6E-66 2.1E-70 503.5 23.8 260 129-395 12-287 (339)
10 cd06602 GH31_MGAM_SI_GAA This 100.0 9.8E-66 2.1E-70 502.3 23.5 250 129-395 12-269 (339)
11 cd06598 GH31_transferase_CtsZ 100.0 1.3E-65 2.9E-70 497.9 22.4 259 129-395 12-283 (317)
12 cd06591 GH31_xylosidase_XylS X 100.0 1E-64 2.2E-69 492.2 23.6 262 129-395 12-290 (319)
13 cd06599 GH31_glycosidase_Aec37 100.0 1.4E-64 3E-69 490.8 23.5 259 129-395 12-289 (317)
14 cd06593 GH31_xylosidase_YicI Y 100.0 4E-64 8.7E-69 486.8 23.7 258 129-395 12-274 (308)
15 cd06601 GH31_lyase_GLase GLase 100.0 1.9E-64 4.2E-69 489.6 21.2 237 129-395 12-279 (332)
16 cd06594 GH31_glucosidase_YihQ 100.0 1.6E-63 3.4E-68 482.6 21.5 257 129-395 12-289 (317)
17 cd06597 GH31_transferase_CtsY 100.0 3.7E-63 8E-68 484.1 22.6 258 129-395 12-302 (340)
18 PF01055 Glyco_hydro_31: Glyco 100.0 8.2E-58 1.8E-62 463.7 19.9 263 129-395 31-303 (441)
19 cd06595 GH31_xylosidase_XylS-l 100.0 4.8E-57 1E-61 433.2 20.6 236 129-395 13-263 (292)
20 cd06592 GH31_glucosidase_KIAA1 100.0 9.6E-55 2.1E-59 419.4 20.0 248 131-395 20-282 (303)
21 cd06589 GH31 The enzymes of gl 100.0 5.4E-53 1.2E-57 400.3 18.7 218 129-395 12-237 (265)
22 cd06596 GH31_CPE1046 CPE1046 i 100.0 2.3E-31 5.1E-36 244.3 13.2 177 139-395 43-219 (261)
23 PF13802 Gal_mutarotas_2: Gala 99.6 3.4E-15 7.3E-20 111.8 7.1 66 37-107 1-68 (68)
24 PF02065 Melibiase: Melibiase; 99.3 1.1E-11 2.4E-16 123.1 8.3 197 138-356 55-267 (394)
25 COG3345 GalA Alpha-galactosida 98.6 1.5E-07 3.2E-12 94.3 8.7 219 139-392 307-554 (687)
26 PLN03231 putative alpha-galact 98.4 8.2E-06 1.8E-10 79.8 15.2 197 139-359 16-255 (357)
27 PLN02229 alpha-galactosidase 98.2 1.3E-05 2.8E-10 80.1 12.5 71 139-210 78-155 (427)
28 PLN02808 alpha-galactosidase 98.2 1.9E-05 4E-10 78.3 12.7 162 139-359 47-223 (386)
29 PLN02692 alpha-galactosidase 98.2 3.9E-05 8.3E-10 76.3 14.0 163 139-360 71-248 (412)
30 PLN02899 alpha-galactosidase 98.0 0.00012 2.6E-09 75.5 15.3 193 139-359 46-286 (633)
31 TIGR02456 treS_nterm trehalose 95.4 0.12 2.6E-06 54.1 11.1 126 138-268 25-191 (539)
32 PF02638 DUF187: Glycosyl hydr 95.4 0.15 3.3E-06 49.6 10.9 133 139-276 17-161 (311)
33 COG1649 Uncharacterized protei 95.0 0.24 5.1E-06 49.7 10.9 137 139-280 62-210 (418)
34 PRK10933 trehalose-6-phosphate 94.5 0.28 6E-06 51.6 10.7 126 138-268 30-194 (551)
35 PF00128 Alpha-amylase: Alpha 94.5 0.059 1.3E-06 51.3 5.3 127 142-275 5-167 (316)
36 PF13200 DUF4015: Putative gly 93.1 0.9 2E-05 44.1 10.5 122 132-268 4-138 (316)
37 TIGR02403 trehalose_treC alpha 93.0 0.65 1.4E-05 48.8 10.2 126 138-268 24-187 (543)
38 PRK10785 maltodextrin glucosid 91.9 1.1 2.5E-05 47.5 10.4 120 139-266 177-325 (598)
39 PF14871 GHL6: Hypothetical gl 90.0 1.4 3E-05 37.2 7.2 77 185-268 46-124 (132)
40 TIGR01515 branching_enzym alph 89.3 1.8 3.8E-05 46.2 9.1 129 139-276 154-295 (613)
41 PLN02219 probable galactinol-- 88.1 0.77 1.7E-05 49.1 5.2 141 129-276 200-386 (775)
42 PRK03705 glycogen debranching 88.0 1.1 2.3E-05 48.2 6.4 87 184-275 243-335 (658)
43 COG0366 AmyA Glycosidases [Car 87.8 3.7 8E-05 42.1 10.1 126 139-268 27-192 (505)
44 PRK12313 glycogen branching en 87.4 2.6 5.7E-05 45.1 8.9 128 138-276 167-309 (633)
45 COG1523 PulA Type II secretory 87.1 1.9 4.1E-05 46.4 7.5 88 184-276 266-359 (697)
46 PRK14510 putative bifunctional 86.8 1.3 2.7E-05 51.0 6.4 85 184-268 248-336 (1221)
47 PLN02355 probable galactinol-- 86.5 1.1 2.3E-05 48.1 5.2 71 129-200 204-311 (758)
48 PLN02711 Probable galactinol-- 86.2 1.3 2.7E-05 47.6 5.5 71 129-200 214-324 (777)
49 TIGR02100 glgX_debranch glycog 86.0 1.7 3.7E-05 46.9 6.6 90 184-275 246-340 (688)
50 PLN02684 Probable galactinol-- 85.8 1.2 2.5E-05 47.7 5.0 71 129-200 203-302 (750)
51 TIGR01370 cysRS possible cyste 85.6 2.6 5.7E-05 40.9 7.0 101 156-277 64-168 (315)
52 smart00642 Aamy Alpha-amylase 85.0 2.9 6.3E-05 36.7 6.5 67 138-206 16-93 (166)
53 PRK14706 glycogen branching en 84.8 8.2 0.00018 41.4 11.0 125 143-276 170-306 (639)
54 TIGR02402 trehalose_TreZ malto 84.1 3 6.5E-05 43.8 7.2 121 139-276 109-244 (542)
55 TIGR02104 pulA_typeI pullulana 84.0 2.1 4.5E-05 45.7 6.1 78 184-266 230-310 (605)
56 PLN03244 alpha-amylase; Provis 83.6 2.9 6.3E-05 45.3 6.8 90 179-275 436-530 (872)
57 KOG2366 Alpha-D-galactosidase 83.3 1.2 2.6E-05 43.8 3.5 70 139-209 58-134 (414)
58 COG2342 Predicted extracellula 82.6 5.6 0.00012 37.6 7.5 111 134-268 26-140 (300)
59 PF01301 Glyco_hydro_35: Glyco 81.8 2.1 4.5E-05 41.8 4.7 80 125-211 10-91 (319)
60 PF10566 Glyco_hydro_97: Glyco 81.6 7.8 0.00017 36.9 8.3 67 139-207 30-97 (273)
61 PLN02960 alpha-amylase 81.1 4 8.7E-05 44.8 6.9 130 129-266 404-547 (897)
62 cd06565 GH20_GcnA-like Glycosy 80.7 32 0.0007 33.2 12.5 118 133-265 9-128 (301)
63 COG0296 GlgB 1,4-alpha-glucan 80.7 9 0.0002 40.7 9.1 122 138-268 162-296 (628)
64 PLN00196 alpha-amylase; Provis 79.6 4.3 9.3E-05 41.3 6.2 63 139-203 42-112 (428)
65 TIGR02103 pullul_strch alpha-1 78.8 2.9 6.3E-05 46.4 5.0 77 184-265 405-486 (898)
66 PRK14705 glycogen branching en 78.3 4.1 8.8E-05 46.7 6.1 123 144-276 769-904 (1224)
67 PRK15447 putative protease; Pr 77.4 3.3 7.2E-05 40.0 4.5 111 139-259 13-130 (301)
68 PRK12568 glycogen branching en 77.1 3.8 8.1E-05 44.4 5.2 122 145-276 274-408 (730)
69 TIGR02102 pullulan_Gpos pullul 76.8 4.8 0.0001 45.7 6.0 83 184-275 556-641 (1111)
70 PRK05402 glycogen branching en 76.1 5.3 0.00012 43.6 6.1 129 139-276 263-404 (726)
71 PLN02361 alpha-amylase 74.5 14 0.00031 37.2 8.2 62 141-205 29-98 (401)
72 PLN02447 1,4-alpha-glucan-bran 73.7 6.3 0.00014 42.9 5.8 120 139-266 248-381 (758)
73 cd02742 GH20_hexosaminidase Be 72.4 13 0.00028 36.0 7.2 203 133-362 9-230 (303)
74 PF05691 Raffinose_syn: Raffin 71.5 6.5 0.00014 42.5 5.2 71 129-200 196-307 (747)
75 KOG0471 Alpha-amylase [Carbohy 71.0 9.9 0.00021 40.0 6.4 114 154-268 51-207 (545)
76 PF00331 Glyco_hydro_10: Glyco 69.7 5.1 0.00011 39.1 3.7 53 140-202 187-239 (320)
77 KOG0470 1,4-alpha-glucan branc 68.8 9.1 0.0002 41.0 5.5 77 184-265 312-392 (757)
78 PF02449 Glyco_hydro_42: Beta- 67.6 11 0.00023 37.6 5.6 110 139-264 8-120 (374)
79 PRK09441 cytoplasmic alpha-amy 66.3 15 0.00032 38.0 6.5 61 140-203 21-101 (479)
80 PLN02784 alpha-amylase 65.9 24 0.00053 38.9 8.1 61 141-204 521-589 (894)
81 COG0826 Collagenase and relate 65.6 22 0.00049 35.1 7.3 97 157-259 27-136 (347)
82 cd06570 GH20_chitobiase-like_1 64.6 72 0.0016 31.0 10.6 122 136-265 13-144 (311)
83 PF01373 Glyco_hydro_14: Glyco 63.5 33 0.00072 34.4 8.0 78 141-229 16-108 (402)
84 cd06416 GH25_Lys1-like Lys-1 i 62.4 9.4 0.0002 34.2 3.8 74 130-206 58-133 (196)
85 cd04883 ACT_AcuB C-terminal AC 60.5 25 0.00055 25.3 5.2 57 141-200 13-69 (72)
86 PLN02877 alpha-amylase/limit d 60.0 21 0.00046 40.0 6.5 84 184-273 467-556 (970)
87 PF03537 Glyco_hydro_114: Glyc 60.0 13 0.00029 27.8 3.6 22 186-207 39-60 (74)
88 PF00728 Glyco_hydro_20: Glyco 59.1 20 0.00044 35.0 5.8 130 133-266 11-154 (351)
89 cd06564 GH20_DspB_LnbB-like Gl 58.3 41 0.00088 32.8 7.7 116 137-265 13-152 (326)
90 PRK14511 maltooligosyl trehalo 58.2 37 0.00079 37.7 7.9 66 139-207 18-93 (879)
91 smart00633 Glyco_10 Glycosyl h 57.6 16 0.00035 34.2 4.6 53 140-202 135-188 (254)
92 COG0036 Rpe Pentose-5-phosphat 57.3 16 0.00035 33.5 4.3 62 147-210 53-123 (220)
93 PRK15063 isocitrate lyase; Pro 55.5 25 0.00054 35.6 5.7 63 139-208 289-351 (428)
94 PRK13840 sucrose phosphorylase 52.4 1.4E+02 0.003 31.1 10.6 120 139-268 18-187 (495)
95 TIGR02401 trehalose_TreY malto 51.4 55 0.0012 36.2 7.9 81 139-222 14-106 (825)
96 PRK08883 ribulose-phosphate 3- 50.9 19 0.00042 33.1 3.8 62 147-210 49-120 (220)
97 PLN02803 beta-amylase 49.4 61 0.0013 33.7 7.3 78 120-206 84-167 (548)
98 PLN02801 beta-amylase 49.4 62 0.0013 33.5 7.4 80 118-206 12-97 (517)
99 PLN02705 beta-amylase 49.2 57 0.0012 34.5 7.2 77 121-206 246-328 (681)
100 PRK08745 ribulose-phosphate 3- 48.8 23 0.0005 32.7 4.0 63 146-210 52-124 (223)
101 PRK09722 allulose-6-phosphate 47.4 31 0.00066 32.0 4.6 56 153-210 58-122 (229)
102 PRK14507 putative bifunctional 46.2 65 0.0014 38.5 7.8 81 139-222 756-848 (1693)
103 cd00419 Ferrochelatase_C Ferro 44.1 67 0.0014 27.0 5.8 64 140-210 40-104 (135)
104 PLN00197 beta-amylase; Provisi 43.2 86 0.0019 32.8 7.3 78 120-206 104-187 (573)
105 PF10096 DUF2334: Uncharacteri 43.1 62 0.0014 30.1 6.0 63 137-202 12-74 (243)
106 COG0041 PurE Phosphoribosylcar 42.7 56 0.0012 28.3 5.0 51 139-203 14-64 (162)
107 PLN03059 beta-galactosidase; P 42.4 58 0.0013 36.0 6.3 80 124-210 44-125 (840)
108 PLN02905 beta-amylase 42.2 87 0.0019 33.3 7.2 77 121-206 264-346 (702)
109 PRK09505 malS alpha-amylase; R 40.7 63 0.0014 35.1 6.3 64 139-205 228-314 (683)
110 cd04934 ACT_AK-Hom3_1 CT domai 39.2 61 0.0013 24.1 4.3 52 140-195 15-66 (73)
111 PF07488 Glyco_hydro_67M: Glyc 39.2 87 0.0019 30.3 6.2 95 139-268 55-149 (328)
112 PF00834 Ribul_P_3_epim: Ribul 38.9 27 0.00058 31.7 2.7 56 153-210 56-119 (201)
113 PRK14582 pgaB outer membrane N 38.9 1.7E+02 0.0036 31.7 9.1 113 140-266 333-456 (671)
114 TIGR01162 purE phosphoribosyla 38.1 64 0.0014 28.0 4.8 50 139-202 10-59 (156)
115 KOG1405 4-aminobutyrate aminot 38.0 39 0.00085 33.4 3.8 56 140-201 255-310 (484)
116 TIGR01664 DNA-3'-Pase DNA 3'-p 37.8 49 0.0011 28.8 4.2 46 158-203 14-65 (166)
117 PRK08005 epimerase; Validated 37.5 45 0.00099 30.4 4.0 55 154-210 58-120 (210)
118 PRK08091 ribulose-phosphate 3- 36.8 55 0.0012 30.3 4.5 37 172-210 94-132 (228)
119 PF13546 DDE_5: DDE superfamil 36.4 68 0.0015 30.1 5.2 51 140-206 169-219 (273)
120 cd04908 ACT_Bt0572_1 N-termina 36.2 1.5E+02 0.0034 20.9 6.0 54 140-200 12-65 (66)
121 cd06525 GH25_Lyc-like Lyc mura 35.6 46 0.00099 29.4 3.7 62 139-207 66-128 (184)
122 cd06562 GH20_HexA_HexB-like Be 34.6 2E+02 0.0043 28.3 8.4 124 136-266 13-147 (348)
123 cd06563 GH20_chitobiase-like T 34.1 3.3E+02 0.0071 26.8 9.9 123 136-265 13-162 (357)
124 cd06568 GH20_SpHex_like A subg 33.8 1.9E+02 0.0042 28.2 8.0 200 133-361 11-229 (329)
125 TIGR01675 plant-AP plant acid 33.8 83 0.0018 29.2 5.1 75 129-203 45-143 (229)
126 PRK06769 hypothetical protein; 33.5 76 0.0016 27.7 4.7 46 156-203 3-51 (173)
127 cd03415 CbiX_CbiC Archaeal sir 33.2 1.1E+02 0.0024 25.4 5.4 53 139-208 15-68 (125)
128 COG1809 (2R)-phospho-3-sulfola 33.0 1.2E+02 0.0027 27.9 5.9 79 139-229 58-138 (258)
129 COG4868 Uncharacterized protei 32.0 87 0.0019 30.5 5.0 48 140-201 91-138 (493)
130 TIGR03471 HpnJ hopanoid biosyn 31.6 1.9E+02 0.0041 29.7 8.0 111 139-264 321-433 (472)
131 PF07485 DUF1529: Domain of Un 31.5 75 0.0016 26.4 4.0 51 139-194 66-118 (123)
132 TIGR01680 Veg_Stor_Prot vegeta 31.4 75 0.0016 30.3 4.5 75 129-203 71-168 (275)
133 PF12138 Spherulin4: Spherulat 30.6 83 0.0018 29.6 4.7 74 127-210 70-153 (253)
134 PF04468 PSP1: PSP1 C-terminal 30.1 1.6E+02 0.0035 22.7 5.5 56 142-199 27-83 (88)
135 cd07381 MPP_CapA CapA and rela 29.7 1.3E+02 0.0027 27.7 5.8 62 139-210 160-221 (239)
136 cd00599 GH25_muramidase Endo-N 28.3 53 0.0011 28.8 2.8 73 130-208 57-130 (186)
137 TIGR01668 YqeG_hyp_ppase HAD s 28.0 1.2E+02 0.0026 26.3 5.1 43 156-204 24-67 (170)
138 cd06415 GH25_Cpl1-like Cpl-1 l 27.7 67 0.0014 28.7 3.4 60 142-207 72-132 (196)
139 TIGR02455 TreS_stutzeri trehal 27.1 92 0.002 33.5 4.7 64 155-221 86-166 (688)
140 PF03740 PdxJ: Pyridoxal phosp 26.8 62 0.0013 30.2 3.0 25 184-208 112-136 (239)
141 TIGR00559 pdxJ pyridoxine 5'-p 26.8 64 0.0014 30.0 3.1 25 184-208 111-135 (237)
142 cd00003 PNPsynthase Pyridoxine 26.5 65 0.0014 29.9 3.1 25 184-208 111-135 (234)
143 cd06522 GH25_AtlA-like AtlA is 26.2 84 0.0018 28.0 3.8 59 140-206 73-133 (192)
144 cd04882 ACT_Bt0572_2 C-termina 26.2 1.4E+02 0.0031 20.5 4.4 54 141-199 11-64 (65)
145 PRK05265 pyridoxine 5'-phospha 26.1 67 0.0015 29.9 3.1 25 184-208 114-138 (239)
146 TIGR01681 HAD-SF-IIIC HAD-supe 26.0 1.1E+02 0.0024 25.1 4.3 21 180-202 31-51 (128)
147 cd03078 GST_N_Metaxin1_like GS 26.0 1.6E+02 0.0035 21.6 4.7 54 141-196 17-73 (73)
148 PRK08195 4-hyroxy-2-oxovalerat 25.9 2.3E+02 0.005 27.8 7.1 71 129-208 14-89 (337)
149 cd06569 GH20_Sm-chitobiase-lik 25.6 3.6E+02 0.0077 27.7 8.6 131 133-265 15-191 (445)
150 cd06414 GH25_LytC-like The Lyt 25.6 65 0.0014 28.6 2.9 64 140-206 73-136 (191)
151 cd04909 ACT_PDH-BS C-terminal 25.0 96 0.0021 22.0 3.3 54 142-199 14-69 (69)
152 KOG1014 17 beta-hydroxysteroid 24.9 2.6E+02 0.0056 27.2 6.9 125 186-338 63-195 (312)
153 PF14488 DUF4434: Domain of un 24.7 2E+02 0.0043 25.1 5.8 59 139-202 18-84 (166)
154 PRK08392 hypothetical protein; 24.3 2.2E+02 0.0047 25.8 6.2 22 187-208 165-186 (215)
155 PF00731 AIRC: AIR carboxylase 24.1 63 0.0014 27.9 2.4 51 139-203 12-62 (150)
156 PF04914 DltD_C: DltD C-termin 23.7 82 0.0018 26.4 3.0 23 184-206 37-59 (130)
157 TIGR03852 sucrose_gtfA sucrose 23.6 4.5E+02 0.0098 27.2 8.9 122 138-268 14-183 (470)
158 PF11340 DUF3142: Protein of u 23.6 1.9E+02 0.0041 25.8 5.3 56 140-206 26-84 (181)
159 cd04902 ACT_3PGDH-xct C-termin 23.5 2.6E+02 0.0056 19.7 5.4 60 140-202 10-70 (73)
160 PTZ00445 p36-lilke protein; Pr 23.3 1.3E+02 0.0029 27.5 4.4 62 140-203 28-98 (219)
161 PRK10904 DNA adenine methylase 23.2 1.7E+02 0.0036 27.7 5.4 50 156-205 174-229 (271)
162 PLN02645 phosphoglycolate phos 22.9 2.8E+02 0.006 26.7 7.0 52 139-204 17-68 (311)
163 KOG0496 Beta-galactosidase [Ca 22.9 9.8E+02 0.021 25.8 14.0 73 129-210 40-115 (649)
164 PF09587 PGA_cap: Bacterial ca 22.8 1.5E+02 0.0033 27.4 5.0 60 141-210 171-230 (250)
165 TIGR03217 4OH_2_O_val_ald 4-hy 22.6 3.1E+02 0.0067 26.9 7.2 72 129-208 13-88 (333)
166 TIGR02328 conserved hypothetic 22.5 78 0.0017 25.9 2.5 55 144-198 55-119 (120)
167 TIGR00262 trpA tryptophan synt 22.5 1.9E+02 0.004 27.2 5.5 69 139-209 70-153 (256)
168 TIGR00213 GmhB_yaeD D,D-heptos 22.4 93 0.002 27.0 3.3 23 179-203 27-49 (176)
169 COG1184 GCD2 Translation initi 22.4 2.1E+02 0.0046 27.7 5.8 55 139-208 128-182 (301)
170 TIGR00571 dam DNA adenine meth 22.3 1.8E+02 0.004 27.3 5.5 47 158-204 174-226 (266)
171 PLN02161 beta-amylase 22.2 1.8E+02 0.0038 30.3 5.5 79 119-206 89-177 (531)
172 TIGR02495 NrdG2 anaerobic ribo 22.1 1.2E+02 0.0025 26.7 3.9 14 186-199 143-156 (191)
173 KOG3111 D-ribulose-5-phosphate 22.1 86 0.0019 28.3 2.8 37 172-210 90-126 (224)
174 TIGR01261 hisB_Nterm histidino 22.0 97 0.0021 26.8 3.2 23 180-204 31-53 (161)
175 PF00150 Cellulase: Cellulase 22.0 57 0.0012 30.2 1.9 62 142-205 22-84 (281)
176 PRK13663 hypothetical protein; 21.9 1.2E+02 0.0027 30.6 4.2 48 140-201 91-138 (493)
177 PF14488 DUF4434: Domain of un 21.9 91 0.002 27.3 3.0 32 179-210 16-47 (166)
178 TIGR01691 enolase-ppase 2,3-di 20.9 71 0.0015 29.3 2.3 28 174-203 91-118 (220)
179 PF08924 DUF1906: Domain of un 20.7 1.9E+02 0.0041 24.4 4.6 69 129-201 62-134 (136)
180 PF11181 YflT: Heat induced st 20.5 81 0.0018 25.0 2.2 26 137-162 6-31 (103)
181 COG1964 Predicted Fe-S oxidore 20.4 2.8E+02 0.0061 28.4 6.3 60 139-210 92-152 (475)
182 TIGR03849 arch_ComA phosphosul 20.2 2E+02 0.0043 26.9 5.0 107 139-268 39-148 (237)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=1.9e-81 Score=665.12 Aligned_cols=362 Identities=28% Similarity=0.541 Sum_probs=312.8
Q ss_pred EEEecceEEEEEEcCCCCCcEEeCCCCCCCccccCCCCeEEEEEeccCCCccc-CCCcccccceEEEecCCCCceEEEEE
Q 048354 20 LVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQITLWNADNAAAAV-DVNLYGAHPFYIDLRSPNGTTHGVLL 98 (395)
Q Consensus 20 l~~~~~~l~~~~~l~~~~e~~yGlGe~~~~~~~l~~~~~~~~~~n~d~~~~~~-~~~~y~~~Pf~~s~~~~~~~~~Gvf~ 98 (395)
+...+....+.++|+ ++|++|||||+.++ |+++++++++||+|+.++.. ..++|++|||+|+.+.. +.+||||+
T Consensus 57 ~~~~~~~~~~~~~l~-~~e~~YGlGE~~g~---L~rrG~~~~lwN~D~~gy~~~~~~LY~siPf~l~~~~~-g~~yGVf~ 131 (978)
T PLN02763 57 FECDGDQQIVTFELP-SGTSFYGTGEVSGP---LERTGKRVYTWNTDAWGYGQNTTSLYQSHPWVFVVLPN-GEALGVLA 131 (978)
T ss_pred EEeeCCEEEEEEEcC-CCCeEEeCCccCCc---cccCCcEEEEEECCCCccCCCCCcccccEeEEEEEecC-CcEEEEEE
Confidence 445556667889999 69999999999986 55556679999999976543 46999999999997532 46799999
Q ss_pred cCCCCeeEEeeCC-eEEEEEecCeEEEEEEe-----------------------------ccccccCCCCChHHHHHHHh
Q 048354 99 LNSNGMDVVYTGD-RITFKVIGGIIDLYFFA-----------------------------GFHQCRYGYKNVSYLEGVVA 148 (395)
Q Consensus 99 ~n~~~~~~~~~~~-~~~~~~~~g~ld~y~~~-----------------------------G~~qsr~~y~~~~~v~~~~~ 148 (395)
||+++++|+++.. .+.|.+.+ |+|++. |||||||+|.++++|+++++
T Consensus 132 dns~~~~fDlg~~~~~~f~a~~---~y~~i~~G~gptp~eVi~~Yt~LTGrp~mpP~WALGy~qSR~~Y~sq~eV~eva~ 208 (978)
T PLN02763 132 DTTRRCEIDLRKESIIRIIAPA---SYPVITFGPFPSPEALLTSLSHAIGTVFMPPKWALGYQQCRWSYESAKRVAEIAR 208 (978)
T ss_pred eCCCcEEEEEcCCceEEEEecC---ceEEEEecCCCCHHHHHHHHHHHhCCCCCCchHHhheeeccCCCCCHHHHHHHHH
Confidence 9999999999864 45565543 666541 99999999999999999999
Q ss_pred hcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHHHhhhcceEEec
Q 048354 149 GYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKR 228 (395)
Q Consensus 149 ~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e~~~~g~~v~~ 228 (395)
+||+++||||+||+|++||+++++|+||+++|||| ++|+++||++|+|++++++|+|+.+++|..|+++.++++||++
T Consensus 209 ~fre~~IP~DvIwlDidYm~g~~~FTwD~~rFPdP--~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~~~fvk~ 286 (978)
T PLN02763 209 TFREKKIPCDVVWMDIDYMDGFRCFTFDKERFPDP--KGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCENDVWIQT 286 (978)
T ss_pred HHHHcCCCceEEEEehhhhcCCCceeECcccCCCH--HHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhcCeeEEC
Confidence 99999999999999999999999999999999988 9999999999999999999999998889999999999999998
Q ss_pred C-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC---CCCCCCCCCCCcc------ccCCCCccccc----CC
Q 048354 229 E-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA---SRPVFYFDDPPYK------ISNGGGGKQIN----DR 294 (395)
Q Consensus 229 ~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~---~~d~~~~~~~~~~------~~~~~~~~~~~----~~ 294 (395)
. |++|++.+|||.+++||||||+|++||.++++++++.++ |.|| +||... .+.. ..+... +.
T Consensus 287 ~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~Dm---nEPa~f~~~~~t~P~~-~~h~g~~~~gG~ 362 (978)
T PLN02763 287 ADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDM---NEPAVFKTVTKTMPET-NIHRGDEELGGV 362 (978)
T ss_pred CCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccC---CCCccccCCcCCCCcc-ccccCCcccCCc
Confidence 7 899999999999999999999999999999999998777 5554 344321 0100 000001 11
Q ss_pred -CccccccchHHHHHHHHHHHHHHh-cCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhccccCCCcccC
Q 048354 295 -TFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVGALVKPLEIV 372 (395)
Q Consensus 295 -t~~~~hN~Y~~~~~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~ 372 (395)
+...+||+|+++|+||+||++++. +++|||+++||+|+|+|||+++|+||+.++|++|+.+|+++|++||||+||||+
T Consensus 363 ~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGsQRYaa~WtGDn~SsWe~L~~sI~~~LnlgLSGipf~G~ 442 (978)
T PLN02763 363 QNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGSQRYAATWTGDNLSNWEHLHMSIPMVLQLGLSGQPLSGP 442 (978)
T ss_pred cCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcCCCCceEECCCccCCHHHHHHHHHHHHHHHhcCCccccc
Confidence 233599999999999999999875 689999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCC-CCChhhHHHHHhhcC
Q 048354 373 KRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 373 DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
|||||.|+ .+||+.||.|++||+
T Consensus 443 DIGGF~G~~~~ELy~RW~Q~GaF~ 466 (978)
T PLN02763 443 DIGGFAGDATPKLFGRWMGVGAMF 466 (978)
T ss_pred ccCCCCCCCCHHHHHHHHHHhhhh
Confidence 99999987 579999999999995
No 2
>PRK10658 putative alpha-glucosidase; Provisional
Probab=100.00 E-value=1.2e-80 Score=649.83 Aligned_cols=351 Identities=21% Similarity=0.345 Sum_probs=310.9
Q ss_pred ceEEEEEEcCCCCCcEEeCCCCCCCccccCCCCeEEEEEeccCCCcccCCCcccccceEEEecCCCCceEEEEEcCCCCe
Q 048354 25 QYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQITLWNADNAAAAVDVNLYGAHPFYIDLRSPNGTTHGVLLLNSNGM 104 (395)
Q Consensus 25 ~~l~~~~~l~~~~e~~yGlGe~~~~~~~l~~~~~~~~~~n~d~~~~~~~~~~y~~~Pf~~s~~~~~~~~~Gvf~~n~~~~ 104 (395)
++++..+.|+ ++|++|||||++++ |+ ++++.+++||+|.+ ...+++|++||||||+++ ||||+||++.+
T Consensus 147 ~~~~~~~~l~-~~E~~yGlGE~~~~-l~--~~G~~~~~wn~D~~--~~~~~~Y~~iPf~~s~~g-----yGvf~dn~~~~ 215 (665)
T PRK10658 147 NYMREQLDLG-VGETVYGLGERFTA-FV--KNGQTVDIWNRDGG--TSSEQAYKNIPFYLTNRG-----YGVFVNHPQCV 215 (665)
T ss_pred EEEEEEEecC-CCCeEECCCccCCc-cc--cCCcEEEEEECCCC--CCCccccccccEEEecCc-----EEEEEcCCCce
Confidence 5788999999 69999999999986 54 44566999999975 344689999999999987 99999999999
Q ss_pred eEEeeC---CeEEEEEecCeEEEEEEe--------------------------ccccccC-CC-CChHHHHHHHhhcccC
Q 048354 105 DVVYTG---DRITFKVIGGIIDLYFFA--------------------------GFHQCRY-GY-KNVSYLEGVVAGYANA 153 (395)
Q Consensus 105 ~~~~~~---~~~~~~~~~g~ld~y~~~--------------------------G~~qsr~-~y-~~~~~v~~~~~~~r~~ 153 (395)
.|+++. +.+.|.+++|.||+||+. |||||+. .+ .++++|++++++||++
T Consensus 216 ~fd~g~~~~~~~~~~~~g~~ldyy~~~G~tp~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~ 295 (665)
T PRK10658 216 SFEVGSEKVSKVQFSVEGEYLEYFVIDGPTPKEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAER 295 (665)
T ss_pred EEEEecCccceEEEEecCCcEEEEEEeCCCHHHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHc
Confidence 999875 468899999999999998 9999983 32 3688999999999999
Q ss_pred CCCceEEEEeccccCC--ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHHHhhhcceEEecC-C
Q 048354 154 SIPLEVMWTDIDYMDA--YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-G 230 (395)
Q Consensus 154 ~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~-g 230 (395)
+||||+|++|++||++ +++|+||+++|||| ++|+++||++|+|+++|++|+|..++ +.|+|++++|+|||++ |
T Consensus 296 ~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp--~~mi~~L~~~G~k~~~~i~P~i~~~s--~~f~e~~~~gy~vk~~~G 371 (665)
T PRK10658 296 DLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDP--EGMLKRLKAKGLKICVWINPYIAQKS--PLFKEGKEKGYLLKRPDG 371 (665)
T ss_pred CCCceEEEEchhhhcCCceeeeEEChhhCCCH--HHHHHHHHHCCCEEEEeccCCcCCCc--hHHHHHHHCCeEEECCCC
Confidence 9999999999999987 56999999999998 99999999999999999999998764 8999999999999987 8
Q ss_pred ccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcccccCCCccccccchHHHHHHH
Q 048354 231 VPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNGGGGKQINDRTFPASHNLYGLLEAKA 310 (395)
Q Consensus 231 ~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a 310 (395)
+++...+|+|.+++||||||+||+||.++++++++.|+ |..+.|..+..+.+ ....+|.+...+||+|+++|+||
T Consensus 372 ~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gv--dgfw~D~gE~~p~d---~~~~~G~~~~~~hN~Y~~l~~ka 446 (665)
T PRK10658 372 SVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGV--DCFKTDFGERIPTD---VVWFDGSDPQKMHNYYTYLYNKT 446 (665)
T ss_pred CEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCC--cEEEecCCceeecc---ceecCCCcHHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999887 44433333322221 22234444446999999999999
Q ss_pred HHHHHHHh-cCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhccccCCCcccCCcCCCCCC-CCChhhHH
Q 048354 311 THAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVGALVKPLEIVKRSNFQTL-LTSLENNL 388 (395)
Q Consensus 311 ~~e~~~~~-~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~-~~~l~~r~ 388 (395)
+||++++. +++|||+++||+++|+|||+++|+||+.|+|++|+.+|+++|++||||+||||+|||||.|. .+||+.||
T Consensus 447 ~~e~l~~~~~~~r~~i~tRs~~aGsQry~~~WsGD~~stw~~l~~si~~~Ls~glsG~~~~g~DIGGF~g~~~~ELy~RW 526 (665)
T PRK10658 447 VFDVLKETRGEGEAVLFARSATVGGQQFPVHWGGDCYSNYESMAESLRGGLSLGLSGFGFWSHDIGGFENTATADVYKRW 526 (665)
T ss_pred HHHHHHHhcCCCceEEEEecccCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHhcCCccccCccCCCCCCCCHHHHHHH
Confidence 99999986 56899999999999999999999999999999999999999999999999999999999986 58999999
Q ss_pred HHHhhcC
Q 048354 389 NAAVAFC 395 (395)
Q Consensus 389 ~~~~~~~ 395 (395)
.|+++||
T Consensus 527 ~Q~g~f~ 533 (665)
T PRK10658 527 CAFGLLS 533 (665)
T ss_pred HHhcccC
Confidence 9999997
No 3
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-79 Score=608.73 Aligned_cols=362 Identities=28% Similarity=0.515 Sum_probs=318.3
Q ss_pred ceEEEEEEcCCCCCcEEeCCCCCCCccccCC---CCeEEEEEeccCCCcc--cCCCcccccceEEEecCCCCceEEEEEc
Q 048354 25 QYIQLSSALPSQGSDLYGLGDHTKKTFKLKP---DQKQITLWNADNAAAA--VDVNLYGAHPFYIDLRSPNGTTHGVLLL 99 (395)
Q Consensus 25 ~~l~~~~~l~~~~e~~yGlGe~~~~~~~l~~---~~~~~~~~n~d~~~~~--~~~~~y~~~Pf~~s~~~~~~~~~Gvf~~ 99 (395)
+-+.+.++++ ..+++||+.|+++ ||.|+. +.++|+|+|.|-+.|. ....+|++|||+++.+. ...-|+||.
T Consensus 207 ~SVglD~sF~-~~~~vyGIPEHA~-s~~Lk~T~g~~ePYRLyNlDVFEYe~~spmalYGSIP~m~ah~~--~r~~g~fW~ 282 (915)
T KOG1066|consen 207 ESVGLDFSFV-GSKNVYGIPEHAD-SLRLKDTSGGSEPYRLYNLDVFEYELNSPMALYGSIPFMLAHGP--NRDVGIFWL 282 (915)
T ss_pred ceeEEeEEec-ccceeecCccccc-ceEeeccCCCCCceeEeecceEEEecCCcchheecccEEEecCC--CCceeeEEe
Confidence 4466788888 6899999999998 588864 5689999999998763 44789999999998876 356899999
Q ss_pred CCCCeeEEeeC----------------------CeEEEEEecCeEEEEEEe--------------------------ccc
Q 048354 100 NSNGMDVVYTG----------------------DRITFKVIGGIIDLYFFA--------------------------GFH 131 (395)
Q Consensus 100 n~~~~~~~~~~----------------------~~~~~~~~~g~ld~y~~~--------------------------G~~ 131 (395)
|...+.+++.. ....|.++.|++|.++++ |||
T Consensus 283 NAAeTWVDi~~~t~~~~~s~~~~~~~~s~~~p~~~thw~SEsGiiDvFi~lGP~~~Dv~~qyaaLTG~~~LPplFsiGYH 362 (915)
T KOG1066|consen 283 NAAETWVDIQSSTTDGLFSKMVDPVSGSQKVPQTDTHWMSESGIIDVFIFLGPKPSDVFRQYAALTGTTPLPPLFSIGYH 362 (915)
T ss_pred cchhheEEeeccccccccccccccCCCCCCCCCccceeeccCCcEEEEEEeCCChhHHHHHHHhhcCCCCCCchhhcchh
Confidence 99998887531 124688999999999998 999
Q ss_pred cccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC
Q 048354 132 QCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE 211 (395)
Q Consensus 132 qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~ 211 (395)
||||+|+++++|.+|-++|.+++||+|+||||+.+.++.+.||||+.+||+| ++|+++|.++|.|+|++++|+|+.++
T Consensus 363 QcRWNY~DE~DV~~Vd~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P--~~Ml~kLa~kgRklV~IvDPHIKkD~ 440 (915)
T KOG1066|consen 363 QCRWNYNDEEDVLTVDQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNP--KDMLKKLASKGRKLVTIVDPHIKKDD 440 (915)
T ss_pred hccccccchhhhhhhhcCccccCCccceEEEeeeecCCceeEeeccccCCCH--HHHHHHHHhcCCceEEEeCcccccCC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHH--HHHhc----CCCCCCC---CCCCCCcc
Q 048354 212 TNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIK--LFRNT----LASRPVF---YFDDPPYK 281 (395)
Q Consensus 212 ~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~--~~~~~----~~~~d~~---~~~~~~~~ 281 (395)
+|..++|++.+||+||+. |+.|.|.||||++.+|||.||++|+||+++.. ++... -+|+||. .|+.|+..
T Consensus 441 ~Y~v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fafd~y~g~t~nl~iWNDMNEPSVFnGPEiT 520 (915)
T KOG1066|consen 441 GYFVHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFAFDRYEGSTPNLFIWNDMNEPSVFNGPEIT 520 (915)
T ss_pred CeEEhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcccccccCCCCceEEeccCCCccccCCCccc
Confidence 999999999999999987 99999999999999999999999999999886 12111 1288884 24445443
Q ss_pred ccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhc--CCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHH
Q 048354 282 ISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVT--GKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAI 359 (395)
Q Consensus 282 ~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~--~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~ 359 (395)
.+.+ ...+.+-....+||+||+++..||+++++++. ++|||+|+||.|||+||+|+.|+|||.++|++||.+|+++
T Consensus 521 m~kD--aiHyGg~EHRdVHNiYG~~~h~aT~dGl~~R~~g~~RPFvLsRafFaGsQR~aAiWTGDN~A~W~HLkiSiPM~ 598 (915)
T KOG1066|consen 521 MPKD--AIHYGGWEHRDVHNIYGLMVHMATFDGLIARSGGKERPFVLSRAFFAGSQRTAAIWTGDNTADWDHLKISIPMV 598 (915)
T ss_pred cchh--hhhcCCeeechhhhhhceeeeehhhhhhhhhcCCCcCceEEEeccccCccceeeeeccCCccchhhheeeccee
Confidence 3211 22334444556999999999999999999873 5899999999999999999999999999999999999999
Q ss_pred HhccccCCCcccCCcCCCCCC-CCChhhHHHHHhhc
Q 048354 360 LKVGALVKPLEIVKRSNFQTL-LTSLENNLNAAVAF 394 (395)
Q Consensus 360 l~~~l~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~ 394 (395)
|+.|+.|+||+|+|||||+|+ .+||--||||++||
T Consensus 599 Lsl~iaG~~F~GADVgGFFgNPd~ELlvRWYQ~gaf 634 (915)
T KOG1066|consen 599 LSLGIAGMPFVGADVGGFFGNPDPELLVRWYQTGAF 634 (915)
T ss_pred EecccccceecccccccccCCCCHHHHHHHHHhccc
Confidence 999999999999999999999 58999999999998
No 4
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-77 Score=615.00 Aligned_cols=381 Identities=46% Similarity=0.804 Sum_probs=339.6
Q ss_pred CCCceEeeCCCCCCCCceeEEEecceEEEEEEcCCCCCcEEeCCCCCCCccccCCCCeEEEEEeccCCCcccCCCccccc
Q 048354 1 SSGELLFDTSPNASSTDSVLVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQITLWNADNAAAAVDVNLYGAH 80 (395)
Q Consensus 1 ~~~~~~f~~~~~~~~~~~~l~~~~~~l~~~~~l~~~~e~~yGlGe~~~~~~~l~~~~~~~~~~n~d~~~~~~~~~~y~~~ 80 (395)
|+|++||||+.++ |+|+||||++++.||+ +-.+||+||+.+.++...-+.+.+.||++|.....+..++|++|
T Consensus 152 s~g~~lfdTs~~~------liF~DQflqlsT~LPs-~~~iyG~gE~~~~~~~~~~~~~t~~l~~rd~~p~~~~~NLYGsh 224 (805)
T KOG1065|consen 152 SDGRVLFDTSIGP------LIFEDQFLQLSTYLPS-ENEIYGLGEHTHQSYRHDMNNLTWTLFARDYSPNLPGVNLYGSH 224 (805)
T ss_pred cCCceeeecCCCc------eeeeeeeeeeeccCCC-cccccccccccchhhhcccCCceeeeeecccCCCCCcccccccc
Confidence 6899999999998 9999999999999995 33399999998877544335566999999998756778999999
Q ss_pred ceEEEecCCCCceEEEEEcCCCCeeEEee-CCeEEEEEecCeEEEEEEe--------------------------ccccc
Q 048354 81 PFYIDLRSPNGTTHGVLLLNSNGMDVVYT-GDRITFKVIGGIIDLYFFA--------------------------GFHQC 133 (395)
Q Consensus 81 Pf~~s~~~~~~~~~Gvf~~n~~~~~~~~~-~~~~~~~~~~g~ld~y~~~--------------------------G~~qs 133 (395)
||||+.+.. +..+|||+.|++.|+|.+. .+.++|+++||++|+|+|+ |||+|
T Consensus 225 Pfymcle~~-~~~~GVflLnSNamEv~~~p~p~L~YR~iGGilD~y~flGptPe~vvqQy~q~iG~P~m~pYWslGf~~~ 303 (805)
T KOG1065|consen 225 PFYLCLEDD-SGAHGVFLLNSNAMEVTLRPGPSLTYRTIGGILDFYVFLGPTPEGVVQQYLQLIGRPAMPPYWSLGFQLC 303 (805)
T ss_pred cceeEeecc-CCCceEEEeccCCceEEeccCCeeEEEeecceEEEEEecCCChHHHHHHHHHHhCCccCCchhhccceec
Confidence 999999865 4457999999999999999 6899999999999999998 99999
Q ss_pred cCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCc
Q 048354 134 RYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETN 213 (395)
Q Consensus 134 r~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y 213 (395)
||+|++.++++++++++|+.|||+|++|+|+|||++++|||.|+.+|| +++++++.||++|+|+++|++|+|..+..|
T Consensus 304 RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyMd~ykDFTvd~~~fp--~~~~fv~~Lh~~G~kyvliidP~is~~~~y 381 (805)
T KOG1065|consen 304 RWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYMDGYKDFTVDKVWFP--DLKDFVDDLHARGFKYVLIIDPFISTNSSY 381 (805)
T ss_pred ccccccHHHHHHHHHHHHHcCCCcceeeeehhhhhcccceeeccccCc--chHHHHHHHHhCCCeEEEEeCCccccCccc
Confidence 999999999999999999999999999999999999999999999999 579999999999999999999999999888
Q ss_pred hhHHHhhhcceEEecC-Ccc-ceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC----CCCCC---CCCCCCccccC
Q 048354 214 DTFDRGMKADIYIKRE-GVP-YKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA----SRPVF---YFDDPPYKISN 284 (395)
Q Consensus 214 ~~~~e~~~~g~~v~~~-g~~-~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~----~~d~~---~~~~~~~~~~~ 284 (395)
..|++|.+++++|++. |.+ +.+.+|||.+++|||+||++.+||.++++.|.+... |.||. .|..||. ..
T Consensus 382 ~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~pp~--~~ 459 (805)
T KOG1065|consen 382 GPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNEPSNFPSPPI--NP 459 (805)
T ss_pred hhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCCcccCCCCCc--cc
Confidence 9999999999999986 877 899999999999999999999999999998887765 66663 2222231 11
Q ss_pred CCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhccc
Q 048354 285 GGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVGA 364 (395)
Q Consensus 285 ~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~l 364 (395)
.........+| -..||+|++..+.|+++++.+++++|+++++||+|+|+.||++||+||+.++|+.|+.+|+++|++++
T Consensus 460 ~~~~~~~~~~t-yd~~~lyg~~~aiat~~a~~~v~~kr~~i~srsTf~g~g~y~~hwlgdn~~~w~~L~~sI~gml~fnl 538 (805)
T KOG1065|consen 460 TLDNGDLYAKT-YDTHNLYGYSEAIATHQALVDVPGKRSFILSRSTFVGSGRYAGHWLGDNTARWEDLQTSISGMLEFNL 538 (805)
T ss_pred ccccccccccc-hhhhhhHhHHHhhhhhccceeccccccccccccceecccccceeecccccceehhccccchhhhcccc
Confidence 11111122222 23899999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCcCCCCCC-CCChhhHHHHHhhc
Q 048354 365 LVKPLEIVKRSNFQTL-LTSLENNLNAAVAF 394 (395)
Q Consensus 365 ~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~ 394 (395)
+|+|++|+|||||.+. .+|||+||.|++||
T Consensus 539 ~Gip~Vg~Dicgf~~~~~eELc~RW~q~gaF 569 (805)
T KOG1065|consen 539 FGIPMVGSDICGFLGPPTEELCLRWLQLGAF 569 (805)
T ss_pred cCCCccchhhhcCCCCCCHHHHHHHHHhccC
Confidence 9999999999999988 59999999999998
No 5
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-76 Score=620.22 Aligned_cols=356 Identities=32% Similarity=0.500 Sum_probs=315.7
Q ss_pred ecceEEEEEEcCCCCCcEEeCCCCCCCccccCCCCeEEEEEeccCCCcc--cCCCcccccceEEEecCCCCceEEEEEcC
Q 048354 23 KDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQITLWNADNAAAA--VDVNLYGAHPFYIDLRSPNGTTHGVLLLN 100 (395)
Q Consensus 23 ~~~~l~~~~~l~~~~e~~yGlGe~~~~~~~l~~~~~~~~~~n~d~~~~~--~~~~~y~~~Pf~~s~~~~~~~~~Gvf~~n 100 (395)
.+..+...+++. ++|++|||||++.. +.+.+..+++||.|.+.+. ...++|.++||++|+.+ ||+|++|
T Consensus 139 ~~~~~~~~~~~~-~~e~~yGlge~~~~---l~~~~~~~~~wn~D~~~~~~~~~~~~y~~iPf~~s~~g-----yg~~~~n 209 (772)
T COG1501 139 GGGYVFLYFDLG-GGEHVYGLGERAGG---LGRNGQTYRLWNADAGTYTGGDYDNLYASIPFYLSSRG-----YGLFVDN 209 (772)
T ss_pred CCccEEEEEEec-CCceEeeccccccc---cccCcceEEeeecCCCcccccccccccccCCEEEEccc-----eEEEEEC
Confidence 356778889998 69999999999987 4556667999999998653 34799999999999976 9999999
Q ss_pred CCCeeEEeeCC---eEEEEEecCeEEEEEEe--------------------------c-cccccCCCCChHHHHHHHhhc
Q 048354 101 SNGMDVVYTGD---RITFKVIGGIIDLYFFA--------------------------G-FHQCRYGYKNVSYLEGVVAGY 150 (395)
Q Consensus 101 ~~~~~~~~~~~---~~~~~~~~g~ld~y~~~--------------------------G-~~qsr~~y~~~~~v~~~~~~~ 150 (395)
+..+.|+++.. ...+.+++|.||+|+++ | +|+|++.|.++++|+++++.+
T Consensus 210 ~~~~~fd~~~~~~~~~~~~~e~~~ldyyv~~G~~~~~vi~~yt~lTGkp~l~P~Wa~G~~~~~~~~~~~e~~v~~~i~~~ 289 (772)
T COG1501 210 SAYGSFDVGSEEYSYVQFSVEGGQLDYYVIAGPTPKDVLEKYTDLTGKPPLPPKWALGWLWTSRYTYYDEDEVLEFIDEM 289 (772)
T ss_pred CCceEEEcCCcceEEEEEEecCCcEEEEEEeCCCHHHHHHHHHHhhCCCCCCCceecCCCceeccccccHHHHHHHHhhc
Confidence 99999999863 45567788899999998 9 999999999999999999999
Q ss_pred ccCCCCceEEEEecc-ccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHHHhhhcceEEecC
Q 048354 151 ANASIPLEVMWTDID-YMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE 229 (395)
Q Consensus 151 r~~~iP~d~i~lD~~-~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~ 229 (395)
++++||||+|++|++ |++++++|+||+.+|||| ++|+++||++|+|+++||+|+|..++ +.|++++++|||||++
T Consensus 290 ~~~~IP~d~~~lD~~~~~~~~~~F~wd~~~FP~p--k~mi~~l~~~Gikl~~~i~P~i~~d~--~~~~e~~~~Gy~~k~~ 365 (772)
T COG1501 290 RERDIPLDVFVLDIDFWMDNWGDFTWDPDRFPDP--KQMIAELHEKGIKLIVIINPYIKQDS--PLFKEAIEKGYFVKDP 365 (772)
T ss_pred ccccCcceEEEEeehhhhccccceEECcccCCCH--HHHHHHHHhcCceEEEEeccccccCC--chHHHHHHCCeEEECC
Confidence 999999999999997 999999999999999998 99999999999999999999999997 8999999999999998
Q ss_pred -CccceeeEecCcccccCCCCHHHHHHHHH-HHHHHHhcCCCCCCCCCCCCCccccCCCCcccccCCCccccccchHHHH
Q 048354 230 -GVPYKGKVWAGDVYFPDFLNPAIETFWEG-EIKLFRNTLASRPVFYFDDPPYKISNGGGGKQINDRTFPASHNLYGLLE 307 (395)
Q Consensus 230 -g~~~~~~~w~g~~~~~Dftnp~a~~ww~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~ 307 (395)
|.++.+.+||+.++++|||||+||+||++ ..+.+++.|+.+.+.+++||..... ....++.....+||+||+++
T Consensus 366 ~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~----~~~~~g~~~~~~~N~yp~~~ 441 (772)
T COG1501 366 DGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDG----DGFGNGIDHEEMHNLYPLLY 441 (772)
T ss_pred CCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccc----cccccccCHHHHhcchhHHH
Confidence 89999999999999999999999999995 4455888888222223345442211 01223444456999999999
Q ss_pred HHHHHHHHHHh-cCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhccccCCCcccCCcCCCCC--C-CCC
Q 048354 308 AKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVGALVKPLEIVKRSNFQT--L-LTS 383 (395)
Q Consensus 308 ~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g--~-~~~ 383 (395)
++|+|+++++. +++|||+|+||+|+|+|||+++|+||+.++|++||.+|+++|+++|||+||||+|||||.| . .+|
T Consensus 442 ~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~wd~l~~si~~~Ls~~~sGi~~wg~DiGGF~g~~~~~~E 521 (772)
T COG1501 442 AKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSSWDSLRESIPAGLSLSLSGIPFWGHDIGGFTGGDDPTAE 521 (772)
T ss_pred HHHHHHHHHhhcCCCceEEEEecccccceeccceeCCccccchHHHHhhHHhhhchhccCCccccccccccCCCCCCCHH
Confidence 99999999998 7899999999999999999999999999999999999999999999999999999999998 3 699
Q ss_pred hhhHHHHHhhcC
Q 048354 384 LENNLNAAVAFC 395 (395)
Q Consensus 384 l~~r~~~~~~~~ 395 (395)
|+.||+|++|||
T Consensus 522 L~~RW~q~g~F~ 533 (772)
T COG1501 522 LYIRWYQFGAFS 533 (772)
T ss_pred HHHHHHHHHhcC
Confidence 999999999998
No 6
>PRK10426 alpha-glucosidase; Provisional
Probab=100.00 E-value=4.6e-74 Score=599.02 Aligned_cols=355 Identities=18% Similarity=0.233 Sum_probs=297.0
Q ss_pred EEEecceEEEEEEcCCCCCcEEeCCCCCCCccccCCCCeEEEEEeccCCC-cc-----------------cCCCcccccc
Q 048354 20 LVFKDQYIQLSSALPSQGSDLYGLGDHTKKTFKLKPDQKQITLWNADNAA-AA-----------------VDVNLYGAHP 81 (395)
Q Consensus 20 l~~~~~~l~~~~~l~~~~e~~yGlGe~~~~~~~l~~~~~~~~~~n~d~~~-~~-----------------~~~~~y~~~P 81 (395)
+.+.+.-+.+++.++ ++|++|||||++.. + +++|+++++||+|++. .+ ...++|+++|
T Consensus 65 ~~~~~~~~~~~~~~~-~~E~~yGlGE~~~~-l--~~rG~~~~~w~~d~~~g~~~~~~~~~~~d~~~~~gg~~~~tY~~iP 140 (635)
T PRK10426 65 IALTDNRIWLRLAAD-PDEHIYGCGEQFSY-F--DLRGKPFPLWTSEQGVGRNKQTYVTWQADCKENAGGDYYWTYFPQP 140 (635)
T ss_pred ecccCcEEEEEEecC-CCCeEECCCcCCCh-H--hhCCCEEeeeecccccCcCccccccccccccccccCccccccceeC
Confidence 444455567888898 69999999999985 4 4455669999999862 11 1157999999
Q ss_pred eEEEecCCCCceEEEEEcCCCCeeEEeeC-CeEEEEEecCeEEEEEEe---------------------------ccccc
Q 048354 82 FYIDLRSPNGTTHGVLLLNSNGMDVVYTG-DRITFKVIGGIIDLYFFA---------------------------GFHQC 133 (395)
Q Consensus 82 f~~s~~~~~~~~~Gvf~~n~~~~~~~~~~-~~~~~~~~~g~ld~y~~~---------------------------G~~qs 133 (395)
||||+++ ||||+||++.++|+++. +...+...+|.+|+||+. |+|++
T Consensus 141 f~iSs~~-----ygv~~dn~~~~~fd~~~~~~~~~~~~~~~~d~y~~~G~~~~~vi~~yt~ltGr~p~~P~Wal~G~~~g 215 (635)
T PRK10426 141 TFVSSQK-----YYCHVDNSAYMNFDFSAPEYHELELWEDKATLRFECADTYISLLEKLTALFGRQPELPDWAYDGVTLG 215 (635)
T ss_pred EEEEcCC-----EEEEEcCCCcEEEEecCCCccEEEEEeCCeeEEEEeCCCHHHHHHHHHHhhCCCCCCChhhccCcccc
Confidence 9999986 99999999999999985 344455567999999998 66654
Q ss_pred cCCCCChHHHHHHHhhcccCCCCceEEEEeccccCC---------ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeC
Q 048354 134 RYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDA---------YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVD 204 (395)
Q Consensus 134 r~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~---------~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 204 (395)
.. .++++|+++++++|+++||||+||+| +|+.. +.+|+||+++|||| ++|+++||++|+|+++|++
T Consensus 216 ~~--~~~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp--~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 216 IQ--GGTEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQL--DSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred cc--CCHHHHHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCH--HHHHHHHHHCCCEEEEEEc
Confidence 32 35889999999999999999999999 88742 12689999999988 9999999999999999999
Q ss_pred ceeecCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCccc
Q 048354 205 PGISTNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKL-FRNTLASRPVFYFDDPPYKI 282 (395)
Q Consensus 205 P~i~~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~-~~~~~~~~d~~~~~~~~~~~ 282 (395)
|+|+.+ ++.|+||+++|+|||+. |+++...+|++.+++||||||+|++||++++++ +.+.++ +..+.|..|+.+
T Consensus 291 P~v~~~--~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gv--dg~w~D~~E~~p 366 (635)
T PRK10426 291 PYLASD--GDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGC--SGWMADFGEYLP 366 (635)
T ss_pred CccCCC--CHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCC--CEEeeeCCCCCC
Confidence 999985 58999999999999987 899999999999999999999999999999875 667776 333333333333
Q ss_pred cCCCCcccccCCCccccccchHHHHHHHHHHHHHHhc-CCCcEEEEcccccCCCccc-eeecCCCCCCch---HHHHHHH
Q 048354 283 SNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVT-GKRPFILSRSTFVSSGKYA-AHLTGDNAARWD---DLAYSIL 357 (395)
Q Consensus 283 ~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~-~~rp~~~sRS~~~Gsqry~-~~W~GD~~s~W~---~L~~~I~ 357 (395)
.+ ....+|.+..++||+|+++|+|+++|++++.. .+|||+++||+|+|+|||+ .+|+||+.++|+ +|+.+|+
T Consensus 367 ~d---~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGsQry~~~~WsGD~~ssW~~~d~L~~~I~ 443 (635)
T PRK10426 367 TD---AYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTGSQKYSTLFWAGDQNVDWSLDDGLASVVP 443 (635)
T ss_pred Cc---ceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCCcCCccccccCCCCCCcCcChhHHHHHHH
Confidence 21 12234444456999999999999999998863 4699999999999999998 589999999995 8999999
Q ss_pred HHHhccccCCCcccCCcCCCCC-----CCCChhhHHHHHhhcC
Q 048354 358 AILKVGALVKPLEIVKRSNFQT-----LLTSLENNLNAAVAFC 395 (395)
Q Consensus 358 ~~l~~~l~G~p~~g~DIgGf~g-----~~~~l~~r~~~~~~~~ 395 (395)
++|++||||+||||+|||||.+ ..+||+.||.|++|||
T Consensus 444 ~~Ls~glsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~ 486 (635)
T PRK10426 444 AALSLGMSGHGLHHSDIGGYTTLFGMKRTKELLLRWCEFSAFT 486 (635)
T ss_pred HHHHHHhcCcCccccccCCCcCcCCCCCCHHHHHHHHHHhcCC
Confidence 9999999999999999999974 4789999999999997
No 7
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=100.00 E-value=1.1e-66 Score=505.09 Aligned_cols=248 Identities=37% Similarity=0.599 Sum_probs=230.6
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
|||||||+|.++++|+++++++|+++||||+||+|++|++++++|+||+++|||| ++|+++||++|+|+++|++|+|.
T Consensus 12 G~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp--~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 12 GYHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEP--KKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCH--HHHHHHHHHCCCEEEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHH-hcCCCCCCCCC--CCCCccccC
Q 048354 209 TNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFR-NTLASRPVFYF--DDPPYKISN 284 (395)
Q Consensus 209 ~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~~~~~d~~~~--~~~~~~~~~ 284 (395)
.++.++.|.++.++|+|||+. |+++++.+|||.+++||||||+|++||.+++++++ +.++ |..++ +||..
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv--dg~w~D~~Ep~~---- 163 (317)
T cd06600 90 VDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV--DGIWLDMNEPSD---- 163 (317)
T ss_pred CCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC--ceEEeeCCCCcc----
Confidence 887789999999999999987 88999999999999999999999999999999987 5565 44333 34321
Q ss_pred CCCcccccCCCccccccchHHHHHHHHHHHHHHh-cCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhcc
Q 048354 285 GGGGKQINDRTFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVG 363 (395)
Q Consensus 285 ~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~ 363 (395)
+ .++||+|++++++|+++++++. +++|||+++||+|+|+|||+++|+||+.|+|+.|+.+|+++|++|
T Consensus 164 ------~-----~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~l~~g 232 (317)
T cd06600 164 ------F-----EKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGSQKYAAIWTGDNTASWDDLKLSIPLVLGLS 232 (317)
T ss_pred ------H-----HHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccccCCccceECCcccccHHHHHHHHHHHHHHH
Confidence 1 4599999999999999999987 589999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCcCCCCCC-CCChhhHHHHHhhcC
Q 048354 364 ALVKPLEIVKRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 364 l~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
++|+||||+|||||.++ ++||+.||.|++||+
T Consensus 233 l~G~p~~g~DiGGf~~~~~~EL~~RW~Q~gaf~ 265 (317)
T cd06600 233 ISGIPFVGCDIGGFQGDNSMELLVRWYQLGAFF 265 (317)
T ss_pred hcCCCccCcccCCCCCCCCHHHHHHHHHHhhcC
Confidence 99999999999999986 579999999999995
No 8
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=100.00 E-value=5.5e-66 Score=505.49 Aligned_cols=263 Identities=32% Similarity=0.579 Sum_probs=234.8
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
|||||||+|.+|++|+++++++|+++||||+||+|++|++++++|+||+++|||| ++|+++||++|+|+++|++|+|.
T Consensus 12 G~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp--~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 12 GYQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDP--KELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred hHHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCH--HHHHHHHHHCCCEEEEEEeCcee
Confidence 9999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCC--CCCCCccccC-
Q 048354 209 TNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFY--FDDPPYKISN- 284 (395)
Q Consensus 209 ~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~--~~~~~~~~~~- 284 (395)
.++.|+.|+|++++|+||++. |+++++.+|+|.+++||||||+|++||.++++++++.++ |..+ ++||......
T Consensus 90 ~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gv--dg~w~D~~Ep~~~~~~~ 167 (339)
T cd06604 90 VDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGV--DGIWNDMNEPAVFNTPG 167 (339)
T ss_pred CCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCC--ceEeecCCCccccCCcc
Confidence 887789999999999999987 889999999999999999999999999999999988776 3333 3344322100
Q ss_pred ----C-CCcccccCC--CccccccchHHHHHHHHHHHHHHhc-CCCcEEEEcccccCCCccceeecCCCCCCchHHHHHH
Q 048354 285 ----G-GGGKQINDR--TFPASHNLYGLLEAKATHAALINVT-GKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSI 356 (395)
Q Consensus 285 ----~-~~~~~~~~~--t~~~~hN~Y~~~~~~a~~e~~~~~~-~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I 356 (395)
. +..+...+. +...+||+|+++++||+++++++.. ++|||+++||+|+|+|||+++|+||+.++|++||.+|
T Consensus 168 ~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~ssW~~L~~~i 247 (339)
T cd06604 168 KTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGIQRYAAVWTGDNRSSWEHLRLSI 247 (339)
T ss_pred cccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccccccccccCCcccCCHHHHHHHH
Confidence 0 001111111 3446999999999999999999874 8999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCcccCCcCCCCCC-CCChhhHHHHHhhcC
Q 048354 357 LAILKVGALVKPLEIVKRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 357 ~~~l~~~l~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
+++|++|++|+||||+|||||.+. .+||+.||.|++||+
T Consensus 248 ~~~l~~~l~G~~~~g~DIGGf~~~~~~EL~~RW~Q~g~f~ 287 (339)
T cd06604 248 PMLLNLGLSGVPFVGADIGGFGGDPSPELLVRWMQLGAFF 287 (339)
T ss_pred HHHHHHHhcCCcccccccCCCCCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999886 589999999999996
No 9
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=9.6e-66 Score=503.55 Aligned_cols=260 Identities=31% Similarity=0.544 Sum_probs=232.6
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
|||||||+|.++++|+++++++|+++||||+|++|++|+.++++|+||+++|||| ++|+++||++|+|+++|++|+|.
T Consensus 12 G~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp--~~mi~~L~~~G~k~~~~~~P~v~ 89 (339)
T cd06603 12 GYHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDP--EKMQEKLASKGRKLVTIVDPHIK 89 (339)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCH--HHHHHHHHHCCCEEEEEecCcee
Confidence 9999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc---CC---CCCCCCCCCCCcc
Q 048354 209 TNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT---LA---SRPVFYFDDPPYK 281 (395)
Q Consensus 209 ~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~---~~---~~d~~~~~~~~~~ 281 (395)
.++.+++|+|++++|+|||+. |+++++.+|||.+++||||||+|++||.+++++++.. ++ |.|+ +||...
T Consensus 90 ~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~---~Ep~~f 166 (339)
T cd06603 90 RDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDM---NEPSVF 166 (339)
T ss_pred cCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEecc---CCcccc
Confidence 887789999999999999987 8899999999999999999999999999999987642 22 5554 343311
Q ss_pred ------ccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhc--CCCcEEEEcccccCCCccceeecCCCCCCchHHH
Q 048354 282 ------ISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVT--GKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLA 353 (395)
Q Consensus 282 ------~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~--~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~ 353 (395)
++.+ ....++.+...+||+|+++++||++|++++.. ++|||+++||+++|+|||+++|+||+.|+|+.|+
T Consensus 167 ~~~~~~~p~d--~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~ 244 (339)
T cd06603 167 NGPELTMPKD--AIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGSQRYAAIWTGDNTATWEHLK 244 (339)
T ss_pred CCCCCcCCCc--ceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccccceeeeeCCCccCCHHHHH
Confidence 1110 11122334556999999999999999998874 6899999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCcccCCcCCCCCC-CCChhhHHHHHhhcC
Q 048354 354 YSILAILKVGALVKPLEIVKRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 354 ~~I~~~l~~~l~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
.+|+++|++|++|+||||+|||||.+. .+||+.||.|++||+
T Consensus 245 ~~i~~~L~~~l~G~~~~g~DiGGf~~~~~~EL~~RW~Q~gaf~ 287 (339)
T cd06603 245 ISIPMLLSLNICGIPFCGADVGGFFGNPDEELLVRWYQAGAFY 287 (339)
T ss_pred HHHHHHHHHhhcCccccCCccCCcCCCCCHHHHHHHHHHhhcC
Confidence 999999999999999999999999986 579999999999996
No 10
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=100.00 E-value=9.8e-66 Score=502.34 Aligned_cols=250 Identities=48% Similarity=0.847 Sum_probs=232.1
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
|||||||+|.++++|+++++++|+++||||+||+|++|++++++|+||+++||||++++|+++||++|+|+++|++|+|.
T Consensus 12 G~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 12 GFHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hhHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cC---CCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc-CCCCCCCCCC--CCCcc
Q 048354 209 TN---ETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT-LASRPVFYFD--DPPYK 281 (395)
Q Consensus 209 ~~---~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~-~~~~d~~~~~--~~~~~ 281 (395)
.+ +.|+.|+|++++|+||++. |+++++.+|||.+++||||||+|++||.++++++++. ++ |..++| ||..
T Consensus 92 ~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv--dg~w~D~~Ep~~- 168 (339)
T cd06602 92 ANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF--DGLWIDMNEPSN- 168 (339)
T ss_pred cCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC--cEEEecCCCCch-
Confidence 86 4689999999999999987 8999999999999999999999999999999998765 55 443333 3321
Q ss_pred ccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHh
Q 048354 282 ISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILK 361 (395)
Q Consensus 282 ~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~ 361 (395)
+ ..+||+|++++++++++++++.+++|||+++||+|+|+|||+++|+||+.|+|++|+.+|+++|+
T Consensus 169 ---------~-----~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~w~GD~~s~W~~L~~~i~~~l~ 234 (339)
T cd06602 169 ---------F-----YDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGSGRYAGHWLGDNASTWEDLRYSIIGMLE 234 (339)
T ss_pred ---------H-----hhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccccccceeECCCccCCHHHHHHHHHHHHH
Confidence 1 35999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCcCCCCCC-CCChhhHHHHHhhcC
Q 048354 362 VGALVKPLEIVKRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 362 ~~l~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
+|+||+||||+|||||.+. .+||+.||.|+++|+
T Consensus 235 ~~~sG~~~~~~DigGf~g~~~~EL~~RW~Q~~~f~ 269 (339)
T cd06602 235 FNLFGIPMVGADICGFNGDTTEELCARWMQLGAFY 269 (339)
T ss_pred HHhcCCCcccCCCCCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999987 579999999999996
No 11
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.3e-65 Score=497.94 Aligned_cols=259 Identities=23% Similarity=0.343 Sum_probs=230.9
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccC------CccceEeCCCCCCCchHHHHHHHHHhcCCeEEee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMD------AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~------~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 202 (395)
|||||||+|.++++|++++++||+++||||+|++|++|++ .+++|+||+++|||| ++|+++||++|+|+++|
T Consensus 12 G~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp--~~mi~~L~~~G~k~~~~ 89 (317)
T cd06598 12 GNWASRFGYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDP--AGMIADLAKKGVKTIVI 89 (317)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCH--HHHHHHHHHcCCcEEEE
Confidence 9999999999999999999999999999999999999987 356999999999998 99999999999999999
Q ss_pred eCceeecCCCchhHHHhhhcceEEecC--CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 048354 203 VDPGISTNETNDTFDRGMKADIYIKRE--GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPY 280 (395)
Q Consensus 203 i~P~i~~~~~y~~~~e~~~~g~~v~~~--g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~ 280 (395)
++|+|..++ +.|+|++++|+|+++. |.++++.+|+|.+++||||||+|++||.++++++.+.++...+.+++||..
T Consensus 90 v~P~v~~~~--~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~ 167 (317)
T cd06598 90 TEPFVLKNS--KNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEV 167 (317)
T ss_pred EcCcccCCc--hhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccc
Confidence 999999876 8899999999966544 788999999999999999999999999999999988777222233456654
Q ss_pred cccCCCCcccccCCCccccccchHHHHHHHHHHHHHHh-cCCCcEEEEcccccCCCccc-eeecCCCCCCchHHHHHHHH
Q 048354 281 KISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYA-AHLTGDNAARWDDLAYSILA 358 (395)
Q Consensus 281 ~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~-~~W~GD~~s~W~~L~~~I~~ 358 (395)
.+... ...+.+..++||+|++++++++||++++. +++|||+++||+|+|+|||+ ++|+||+.++|++||.+|++
T Consensus 168 ~~~~~----~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gsqry~~~~WsGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 168 HPPDM----CHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGSQRYGVIPWSGDVGRTWDGLKSQPNA 243 (317)
T ss_pred cCCcc----ccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCccccCcCCccCCCCcCCHHHHHHHHHH
Confidence 43321 12233445699999999999999999875 67899999999999999998 68999999999999999999
Q ss_pred HHhccccCCCcccCCcCCCCCC---CCChhhHHHHHhhcC
Q 048354 359 ILKVGALVKPLEIVKRSNFQTL---LTSLENNLNAAVAFC 395 (395)
Q Consensus 359 ~l~~~l~G~p~~g~DIgGf~g~---~~~l~~r~~~~~~~~ 395 (395)
+|++|++|+||||+|||||.+. .+||+.||.|++||.
T Consensus 244 ~l~~~l~G~~~~g~DIGGf~~~~~~~~EL~~RW~q~g~f~ 283 (317)
T cd06598 244 ALQMSMSGIDYYHSDIGGFAGGDELDPELYTRWFQYGAFD 283 (317)
T ss_pred HHhhhccCCcccCCCcCCcCCCCCCCHHHHHHHHHhccCC
Confidence 9999999999999999999996 789999999999995
No 12
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1e-64 Score=492.17 Aligned_cols=262 Identities=24% Similarity=0.326 Sum_probs=227.2
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCcc--ceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYK--DFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~--~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
|||||||+|.++++|+++++++|+++||||+|++|++|+.+++ +|+||+++|||| ++|+++||++|+|++++++|+
T Consensus 12 G~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp--~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 12 GFWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDP--KAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCH--HHHHHHHHHCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999888 999999999988 999999999999999999999
Q ss_pred eecCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCccccC
Q 048354 207 ISTNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKL-FRNTLASRPVFYFDDPPYKISN 284 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 284 (395)
|..++ +.|+|++++|+||+++ |+++. .+|+|.+++||||||+|++||++++++ +.+.++...+.+++||.+.+..
T Consensus 90 v~~~~--~~y~e~~~~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~ 166 (319)
T cd06591 90 FGPET--ENYKEMDEKGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYD 166 (319)
T ss_pred cCCCC--hhHHHHHHCCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCc
Confidence 98765 8899999999999987 66665 889999999999999999999988876 5566661112223455443221
Q ss_pred CC-CcccccCCCccccccchHHHHHHHHHHHHHHhc-CCCcEEEEcccccCCCccc-eeecCCCCCCchHHHHHHHHHHh
Q 048354 285 GG-GGKQINDRTFPASHNLYGLLEAKATHAALINVT-GKRPFILSRSTFVSSGKYA-AHLTGDNAARWDDLAYSILAILK 361 (395)
Q Consensus 285 ~~-~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~-~~rp~~~sRS~~~Gsqry~-~~W~GD~~s~W~~L~~~I~~~l~ 361 (395)
.. ........+...+||+|+++++|+++|++++.. ++|||+++||+++|+|||+ .+|+||+.|+|++||.+|+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gsqry~~~~W~GD~~s~w~~L~~~i~~~l~ 246 (319)
T cd06591 167 FGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGSQRYGALVWSGDIDSSWETLRRQIAAGLN 246 (319)
T ss_pred ccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccccccccCceeCCCccccHHHHHHHHHHHHH
Confidence 10 001122224456999999999999999998874 7999999999999999998 69999999999999999999999
Q ss_pred ccccCCCcccCCcCCCCCCCC----------ChhhHHHHHhhcC
Q 048354 362 VGALVKPLEIVKRSNFQTLLT----------SLENNLNAAVAFC 395 (395)
Q Consensus 362 ~~l~G~p~~g~DIgGf~g~~~----------~l~~r~~~~~~~~ 395 (395)
+||||+||||+|||||.+..+ ||+.||.|++||+
T Consensus 247 ~glsG~~~~g~DiGGF~~~~~~~~~~~~~~~EL~~RW~q~gaf~ 290 (319)
T cd06591 247 MGLSGIPWWTTDIGGFFVGNPPAGLDDPEYRELYVRWFQFGAFC 290 (319)
T ss_pred HhhcCCccccCCcCCcCCCCccccccCCccHHHHHHHHHHhcCc
Confidence 999999999999999998754 9999999999996
No 13
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.4e-64 Score=490.79 Aligned_cols=259 Identities=22% Similarity=0.308 Sum_probs=225.9
Q ss_pred ccccccCCCCC-----hHHHHHHHhhcccCCCCceEEEEeccccCC----ccceEeCCCCCCCchHHHHHHHHHhcCCeE
Q 048354 129 GFHQCRYGYKN-----VSYLEGVVAGYANASIPLEVMWTDIDYMDA----YKDFTLDPINFPVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 129 G~~qsr~~y~~-----~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~----~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~ 199 (395)
|||||||+|.+ |++|+++++++|+++||||+||||++|++. +.+|+||+++|||| ++|+++||++|+|+
T Consensus 12 G~~~sr~~Y~~~~~~~q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp--~~mi~~L~~~g~k~ 89 (317)
T cd06599 12 GYSGSTMYYTELDPDAQEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDP--AAFVAKFHERGIRL 89 (317)
T ss_pred HHHhcCCCCCCCCccHHHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCH--HHHHHHHHHCCCEE
Confidence 99999999988 999999999999999999999999999965 55899999999988 99999999999999
Q ss_pred EeeeCceeecCCCchhHHHhhhcceEEecC-C-ccceeeEecCcccccCCCCHHHHHHHHHHHHH-HHhcCCCCCCCCC-
Q 048354 200 VVIVDPGISTNETNDTFDRGMKADIYIKRE-G-VPYKGKVWAGDVYFPDFLNPAIETFWEGEIKL-FRNTLASRPVFYF- 275 (395)
Q Consensus 200 ~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~-g-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~-~~~~~~~~d~~~~- 275 (395)
++|++|+|..++ +.|+|++++|+||++. | .++++.+|+|.+++||||||+|++||.+++++ +.+.++ |..++
T Consensus 90 ~~~i~P~i~~~~--~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv--dg~w~D 165 (317)
T cd06599 90 APNIKPGLLQDH--PRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI--DSTWND 165 (317)
T ss_pred EEEeCCcccCCC--HHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC--cEEEec
Confidence 999999998865 8899999999999986 3 46789999999999999999999999999965 566666 33333
Q ss_pred -CCCCccccCCCCcccccCC--CccccccchHHHHHHHHHHHHHHh-cCCCcEEEEcccccCCCccceeecCCCCCCchH
Q 048354 276 -DDPPYKISNGGGGKQINDR--TFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDD 351 (395)
Q Consensus 276 -~~~~~~~~~~~~~~~~~~~--t~~~~hN~Y~~~~~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~ 351 (395)
+|+.....+. .....+. ....+||+|++++++|+|+++++. +++|||+++||+|+|+|||+++|+||+.++|++
T Consensus 166 ~~E~~~~~~~~--~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~qry~~~WsGD~~s~W~~ 243 (317)
T cd06599 166 NNEYEIWDDDA--VCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAGIQRYAQTWSGDNRTSWKT 243 (317)
T ss_pred CCCCccCCCcc--eecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccccCCcCeeCCCcccCHHH
Confidence 3443221111 1111222 223599999999999999999876 679999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCcccCCcCCCCCC--CCChhhHHHHHhhcC
Q 048354 352 LAYSILAILKVGALVKPLEIVKRSNFQTL--LTSLENNLNAAVAFC 395 (395)
Q Consensus 352 L~~~I~~~l~~~l~G~p~~g~DIgGf~g~--~~~l~~r~~~~~~~~ 395 (395)
|+.+|+++|++||||+||||+|||||.+. .+||+.||.|++||+
T Consensus 244 L~~~i~~~L~~glsG~~~~g~DIGGF~~~~~~~ELy~RW~Q~g~F~ 289 (317)
T cd06599 244 LRYNIAMGLGMGLSGVANIGHDIGGFAGPAPEPELFVRWVQNGIFQ 289 (317)
T ss_pred HHHHHHHHHhhhccCCcccccccCccCCCCCCHHHHHHHHHHccCC
Confidence 99999999999999999999999999975 579999999999996
No 14
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=4e-64 Score=486.76 Aligned_cols=258 Identities=21% Similarity=0.298 Sum_probs=232.8
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCcc--ceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYK--DFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~--~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
|||||||+|.++++|+++++++|+++||||+|+||++|+.+++ +|+||+++|||| ++|+++||++|+|+++|++|+
T Consensus 12 G~~~~~~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~--~~~i~~l~~~G~~~~~~~~P~ 89 (308)
T cd06593 12 GLWLSRSFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDP--EGMLSRLKEKGFKVCLWINPY 89 (308)
T ss_pred HHHHHcccCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCH--HHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999999999999999999999999999998876 999999999988 999999999999999999999
Q ss_pred eecCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCC
Q 048354 207 ISTNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNG 285 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 285 (395)
|..++ +.|+|++++|+||++. |+++.+.+|+|.+++||||||+|++||.++++++++.++ +..++|..+..+.+.
T Consensus 90 i~~~~--~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gi--d~~~~D~~e~~p~~~ 165 (308)
T cd06593 90 IAQKS--PLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGV--DCFKTDFGERIPTDV 165 (308)
T ss_pred CCCCc--hhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCC--cEEecCCCCCCCccc
Confidence 98876 7899999999999987 888889999999999999999999999999999988776 444444333333211
Q ss_pred CCcccccCCCccccccchHHHHHHHHHHHHHHhc-CCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhccc
Q 048354 286 GGGKQINDRTFPASHNLYGLLEAKATHAALINVT-GKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVGA 364 (395)
Q Consensus 286 ~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~-~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~l 364 (395)
...++.+..++||+|+++++|+++|++++.. ++|||+++||+++|+|||+++|+||+.++|++||.+|+.+|++|+
T Consensus 166 ---~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gsqry~~~w~GD~~s~w~~L~~~i~~~l~~~l 242 (308)
T cd06593 166 ---VYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGSQKYPVHWGGDCESTFEGMAESLRGGLSLGL 242 (308)
T ss_pred ---cccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccccccCCCEECCCcccCHHHHHHHHHHHHhccc
Confidence 1234445567999999999999999999874 568999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCcCCCCCC-CCChhhHHHHHhhcC
Q 048354 365 LVKPLEIVKRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 365 ~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
+|+|+||+|||||.+. .+||+.||.|++||+
T Consensus 243 ~G~~~~g~DigGf~~~~~~EL~~RW~q~gaf~ 274 (308)
T cd06593 243 SGFGFWSHDIGGFEGTPPPDLYKRWAQFGLLS 274 (308)
T ss_pred cCCceecCccCCcCCCCCHHHHHHHHHhCcCC
Confidence 9999999999999987 479999999999995
No 15
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=1.9e-64 Score=489.61 Aligned_cols=237 Identities=30% Similarity=0.454 Sum_probs=207.0
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
|||||||+|.++++|++++++||+++||||+||+|++|++++++|+||+++|||| ++|+++||++|+|+++|++|+|.
T Consensus 12 G~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPdp--~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 12 GFHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPNP--KEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCCH--HHHHHHHHHCCCeEEEEecCcee
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999998
Q ss_pred cCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC---CCCCCCCCCCCccccC-
Q 048354 209 TNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA---SRPVFYFDDPPYKISN- 284 (395)
Q Consensus 209 ~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~---~~d~~~~~~~~~~~~~- 284 (395)
. +.+|++.+++||||||+|++||.++++.+++.++ |.|| +||......
T Consensus 90 ~-------------------------g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~Dm---nEp~~~~~~~ 141 (332)
T cd06601 90 Y-------------------------GGGLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDM---TTPAIMPSYG 141 (332)
T ss_pred c-------------------------CccCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCC---CCcccccCCC
Confidence 1 2356777899999999999999999988988776 6665 344321100
Q ss_pred -----CCCccc--------ccCCCccccccchHHHHHHHHHHHHHHh---cCCCcEEEEcccccCCCccceeecCCCCCC
Q 048354 285 -----GGGGKQ--------INDRTFPASHNLYGLLEAKATHAALINV---TGKRPFILSRSTFVSSGKYAAHLTGDNAAR 348 (395)
Q Consensus 285 -----~~~~~~--------~~~~t~~~~hN~Y~~~~~~a~~e~~~~~---~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~ 348 (395)
..+... ....+..++||+|++++++|++|++++. +++|||+|+||+|+|+|||+++|+||+.|+
T Consensus 142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGsqrY~~~WsGDn~st 221 (332)
T cd06601 142 DMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGMQRFAGLWTGDNSSS 221 (332)
T ss_pred ccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCccCCcCceeCCCcccC
Confidence 000000 0112234599999999999999999875 578999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccccCCCcccCCcCCCCCC-----------CCChhhHHHHHhhcC
Q 048354 349 WDDLAYSILAILKVGALVKPLEIVKRSNFQTL-----------LTSLENNLNAAVAFC 395 (395)
Q Consensus 349 W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~-----------~~~l~~r~~~~~~~~ 395 (395)
|+.||.+|+++|+++|||+||||+|||||.+. .+||+.||.|++||+
T Consensus 222 W~~L~~si~~~L~~~lsGip~~g~DIGGF~g~~~~~~~~~~~~~~EL~~RW~Q~GaF~ 279 (332)
T cd06601 222 WDFLQINIAQVLNLGMSGLPIAGSDIGGFTSYDGENSIQRTWCNPELLIRWYQAGFLL 279 (332)
T ss_pred HHHHHHHHHHHHHhhhcCCCccCCccCCcCCCCcccccccCCCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999986 479999999999996
No 16
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=100.00 E-value=1.6e-63 Score=482.57 Aligned_cols=257 Identities=19% Similarity=0.242 Sum_probs=224.5
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCC---------ccceEeCCCCCCCchHHHHHHHHHhcCCeE
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDA---------YKDFTLDPINFPVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~---------~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~ 199 (395)
|+||||+.+ ++++|+++++++|+++||||+||+| +|++. +.+|+||+++|||| ++|+++||++|+|+
T Consensus 12 G~~~~~~~~-s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPdp--~~mi~~Lh~~G~~~ 87 (317)
T cd06594 12 GGAILGLQG-GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPGL--DELIEELKARGIRV 87 (317)
T ss_pred CcEEeeeeC-CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeeeEEChhhCCCH--HHHHHHHHHCCCEE
Confidence 899999865 9999999999999999999999999 88752 23799999999988 99999999999999
Q ss_pred EeeeCceeecCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHH-HhcCCCCCCCCCCC
Q 048354 200 VVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLF-RNTLASRPVFYFDD 277 (395)
Q Consensus 200 ~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~-~~~~~~~d~~~~~~ 277 (395)
++|++|+|+.++. ..|+++.++|+|||++ |+++++.+|||.+++||||||+|++||.++++++ .+.++ |..++|.
T Consensus 88 ~~~i~P~v~~~~~-~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv--dg~w~D~ 164 (317)
T cd06594 88 LTYINPYLADDGP-LYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGL--SGWMADF 164 (317)
T ss_pred EEEecCceecCCc-hhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCC--cEEEecC
Confidence 9999999998752 2379999999999987 8899999999999999999999999999999986 56666 4433333
Q ss_pred CCccccCCCCcccccCCCccccccchHHHHHHHHHHHHHHh-cCCCcEEEEcccccCCCccc-eeecCCCCCCch---HH
Q 048354 278 PPYKISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYA-AHLTGDNAARWD---DL 352 (395)
Q Consensus 278 ~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~-~~W~GD~~s~W~---~L 352 (395)
.|+.+.+. ...+|.+...+||+|++++++++++++++. +++|||+++||+|+|+|||+ ++|+||+.|+|+ +|
T Consensus 165 ~E~~p~d~---~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gsqry~~~~WsGD~~s~W~~~~~L 241 (317)
T cd06594 165 GEYLPFDA---VLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGSQKYSTLFWAGDQMVSWDAHDGL 241 (317)
T ss_pred CCCCCCcc---eecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccccccccccccCCCCCCCCcCcccH
Confidence 33333221 223444556799999999999999999887 47899999999999999998 689999999998 79
Q ss_pred HHHHHHHHhccccCCCcccCCcCCCCC-----CCCChhhHHHHHhhcC
Q 048354 353 AYSILAILKVGALVKPLEIVKRSNFQT-----LLTSLENNLNAAVAFC 395 (395)
Q Consensus 353 ~~~I~~~l~~~l~G~p~~g~DIgGf~g-----~~~~l~~r~~~~~~~~ 395 (395)
|.+|+++|++||||+||||+|||||.+ ..+||+.||.|++||+
T Consensus 242 ~~~i~~~L~~~lsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~ 289 (317)
T cd06594 242 KSVVPGALSSGLSGYALHHSDIGGYTSLNGYVRTEELLLRWAEMAAFT 289 (317)
T ss_pred HHHHHHHhhccccCCCcccCccCCCcCCCCCCCCHHHHHHHHHHhccc
Confidence 999999999999999999999999975 4689999999999996
No 17
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=3.7e-63 Score=484.06 Aligned_cols=258 Identities=20% Similarity=0.276 Sum_probs=220.5
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEe-------------cccc--CC-----ccceEeCC-CCCCCchHHH
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTD-------------IDYM--DA-----YKDFTLDP-INFPVDPMKT 187 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD-------------~~~~--~~-----~~~f~~d~-~~FPdp~~~~ 187 (395)
|||||||+|.++++|+++++++|+++||||+|+|| ++|| ++ +.+++|++ ++|||| ++
T Consensus 12 G~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp--~~ 89 (340)
T cd06597 12 GLWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNP--KG 89 (340)
T ss_pred hhhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCH--HH
Confidence 99999999999999999999999999999999997 4444 22 34555663 689988 99
Q ss_pred HHHHHHhcCCeEEeeeCceeecCC-----CchhHHHhhhcceEEecC-Ccccee-eEecCcccccCCCCHHHHHHHHHHH
Q 048354 188 FVDNLHKNGQKYVVIVDPGISTNE-----TNDTFDRGMKADIYIKRE-GVPYKG-KVWAGDVYFPDFLNPAIETFWEGEI 260 (395)
Q Consensus 188 mi~~L~~~G~k~~~~i~P~i~~~~-----~y~~~~e~~~~g~~v~~~-g~~~~~-~~w~g~~~~~Dftnp~a~~ww~~~~ 260 (395)
||++||++|+|+++|++|+|..+. .+..|.++.++|+|||+. |+++.. .+|||.+++||||||+|++||.+++
T Consensus 90 mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~ 169 (340)
T cd06597 90 MIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKR 169 (340)
T ss_pred HHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHH
Confidence 999999999999999999998642 123578999999999987 888764 6899999999999999999999999
Q ss_pred HHHHh-cCCCCCCCCC--CCCCccccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCcc
Q 048354 261 KLFRN-TLASRPVFYF--DDPPYKISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKY 337 (395)
Q Consensus 261 ~~~~~-~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry 337 (395)
+++++ .++ |..++ +|+.+. .. ....+|.+..++||+||++++++++|++++. ++|||+++||+|+|+|||
T Consensus 170 ~~~~~~~Gi--dg~w~D~~E~~~~--~~--~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~-~~r~filtRs~~~Gsqry 242 (340)
T cd06597 170 RYLVDELGI--DGFKTDGGEHVWG--RD--LHFRDGRRGDEMRNTYPNHYVRAYNDFLRRA-KKDGVTFSRAGYTGAQAH 242 (340)
T ss_pred HHHHHhcCC--cEEEecCCCccCC--CC--ceecCCCcHHHhhcccHHHHHHHHHHHHHhc-cCCcEEEEecccCccCCC
Confidence 99884 565 33333 343221 11 1223455556799999999999999998876 889999999999999999
Q ss_pred ceeecCCCCCCchHHHHHHHHHHhccccCCCcccCCcCCCCCC--CCChhhHHHHHhhcC
Q 048354 338 AAHLTGDNAARWDDLAYSILAILKVGALVKPLEIVKRSNFQTL--LTSLENNLNAAVAFC 395 (395)
Q Consensus 338 ~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~g~--~~~l~~r~~~~~~~~ 395 (395)
+++|+||+.|+|++||.+|+++|++||||+||||+|||||.+. .+||+.||.|++||+
T Consensus 243 ~~~WsGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g~~~~~EL~~RW~Q~g~F~ 302 (340)
T cd06597 243 GIFWAGDENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTGDVPTAELYVRSTAMAAFV 302 (340)
T ss_pred cceecCCCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCCCCCCHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999986 589999999999995
No 18
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=100.00 E-value=8.2e-58 Score=463.72 Aligned_cols=263 Identities=35% Similarity=0.583 Sum_probs=221.0
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
|+|+|+|+|.++++|+++++++|+++||||++++|.+|+.++++|+||+++|||| ++|++.||++|+|+++|++|+|.
T Consensus 31 G~~~~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~--~~~~~~l~~~G~~~~~~~~P~v~ 108 (441)
T PF01055_consen 31 GFWQSRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDP--KQMIDELHDQGIKVVLWVHPFVS 108 (441)
T ss_dssp SEEEEESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTH--HHHHHHHHHTT-EEEEEEESEEE
T ss_pred ceEeecCcCCCHHHHHHHHHHHHHcCCCccceeccccccccccccccccccccch--HHHHHhHhhCCcEEEEEeecccC
Confidence 9999999999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred cCCC-chhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc-CCCCCCCCC--CCCCccc-
Q 048354 209 TNET-NDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT-LASRPVFYF--DDPPYKI- 282 (395)
Q Consensus 209 ~~~~-y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~-~~~~d~~~~--~~~~~~~- 282 (395)
.++. |+.|+++.++|+||+++ |+++++.+|+|.+++||||||+|++||.++++++++. +. |+.++ +|+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv--dg~w~D~~E~~~~~~ 186 (441)
T PF01055_consen 109 NDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV--DGWWLDFGEPSSFDS 186 (441)
T ss_dssp TTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST---SEEEEESTTTBSSTT
T ss_pred CCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC--ceEEeecCCcccccc
Confidence 9885 77999999999999987 8899999999999999999999999999999999988 55 43333 3433210
Q ss_pred --cCCCCcccccCCCccccccchHHHHHHHHHHHHHHh-cCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHH
Q 048354 283 --SNGGGGKQINDRTFPASHNLYGLLEAKATHAALINV-TGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAI 359 (395)
Q Consensus 283 --~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~-~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~ 359 (395)
....+....++.+...+||+|++++++++++++++. +++|||+++||+++|+|||+++|+||+.++|++|+.+|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~w~~L~~~i~~~ 266 (441)
T PF01055_consen 187 NNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAGSQRYGGHWSGDNSSSWDGLRSSIPAM 266 (441)
T ss_dssp TBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETTGGGTCEEEECSSBSSHHHHHHHHHHH
T ss_pred cccCcccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccCCCCCccceeecccccccHHHHHHHHHHH
Confidence 000011112223344599999999999999999885 68999999999999999999999999999999999999999
Q ss_pred HhccccCCCcccCCcCCCCCC-CCChhhHHHHHhhcC
Q 048354 360 LKVGALVKPLEIVKRSNFQTL-LTSLENNLNAAVAFC 395 (395)
Q Consensus 360 l~~~l~G~p~~g~DIgGf~g~-~~~l~~r~~~~~~~~ 395 (395)
|++|+||+|+||+|||||.+. .+||+.||+|++||+
T Consensus 267 l~~~~~G~~~~g~DigG~~~~~~~eL~~RW~q~~~f~ 303 (441)
T PF01055_consen 267 LNMGLSGYPFWGSDIGGFSGDPDEELYIRWYQFGAFS 303 (441)
T ss_dssp HHHHCTT-SSEEEEET-SBSTSSHHHHHHHHHHHTTS
T ss_pred HHHhhhhcceecCcccccCCCCCHHHHHHHHHhhcCC
Confidence 999999999999999999988 589999999999996
No 19
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=4.8e-57 Score=433.23 Aligned_cols=236 Identities=17% Similarity=0.234 Sum_probs=194.4
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccC---------CccceEeCCCCCCCchHHHHHHHHHhcCCeE
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMD---------AYKDFTLDPINFPVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~---------~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~ 199 (395)
|||||||+|.++++|+++++++|+++||||+||+|++|+. ++++|+||+++|||| ++|+++||++|+|+
T Consensus 13 G~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp--~~mi~~Lh~~G~k~ 90 (292)
T cd06595 13 GNWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDP--EKLLQDLHDRGLKV 90 (292)
T ss_pred HhHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCH--HHHHHHHHHCCCEE
Confidence 9999999999999999999999999999999999999975 567999999999998 99999999999999
Q ss_pred EeeeCceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHH-HHhcCCCCCCCC--CC
Q 048354 200 VVIVDPGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKL-FRNTLASRPVFY--FD 276 (395)
Q Consensus 200 ~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~-~~~~~~~~d~~~--~~ 276 (395)
|+|++|+|..+..++.|++..++ ..++.. .+...++|||||+|++||.+.+++ +.+.++ |..+ ++
T Consensus 91 v~~v~P~~~~~~~~~~y~~~~~~-~~~~~~---------~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gi--dg~W~D~~ 158 (292)
T cd06595 91 TLNLHPADGIRAHEDQYPEMAKA-LGVDPA---------TEGPILFDLTNPKFMDAYFDNVHRPLEKQGV--DFWWLDWQ 158 (292)
T ss_pred EEEeCCCcccCCCcHHHHHHHHh-cCCCcc---------cCCeEEecCCCHHHHHHHHHHHHHHHHhcCC--cEEEecCC
Confidence 99999999876555778764332 111111 112357899999999998877765 566666 3222 33
Q ss_pred CCCccccCCCCcccccCCCccccccchHHHH-HHHHHHHHHHhcCCCcEEEEcccccCCCccceeecCCCCCCchHHHHH
Q 048354 277 DPPYKISNGGGGKQINDRTFPASHNLYGLLE-AKATHAALINVTGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYS 355 (395)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~-~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~ 355 (395)
|+.-. ..||++++.+ .+..|+..++ +++|||+++||+|+|+|||+++|+||+.|+|+.|+.+
T Consensus 159 E~~~~----------------~~~~~~~~~~~~~~~y~~~~~-~~~r~f~lsRs~~~G~qry~~~WsGD~~s~W~~l~~~ 221 (292)
T cd06595 159 QGNRT----------------RTPGLDPLWWLNHVHYLDSAR-NGRRPLIFSRWAGLGSHRYPIGFSGDTIISWASLAFQ 221 (292)
T ss_pred CCccc----------------ccCCcchHHHHHHHHHHHhhc-cCCCcEEEEeecccCCCcCCCccCCCcccCHHHHHHH
Confidence 43210 1344555443 4566776654 6799999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCcccCCcCCCCC--CCCChhhHHHHHhhcC
Q 048354 356 ILAILKVGALVKPLEIVKRSNFQT--LLTSLENNLNAAVAFC 395 (395)
Q Consensus 356 I~~~l~~~l~G~p~~g~DIgGf~g--~~~~l~~r~~~~~~~~ 395 (395)
|+++|++++||+||||+|||||.+ ..+||+.||.|++|||
T Consensus 222 i~~~l~~~~sG~p~~g~DiGGF~~~~~~~ELy~RW~Q~gaf~ 263 (292)
T cd06595 222 PYFTATASNIGYGYWSHDIGGHMLGVTDPELYTRWIQFGVFS 263 (292)
T ss_pred HHHHHHHHhcCCCcCCCccCCCCCCCCCHHHHHHHHHHhhcc
Confidence 999999999999999999999998 3799999999999997
No 20
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=9.6e-55 Score=419.40 Aligned_cols=248 Identities=19% Similarity=0.222 Sum_probs=214.8
Q ss_pred ccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 131 HQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 131 ~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
|.+...+.++++|+++++++++++||||+|++|++|++.+++|+||+++|||| ++|+++||++|+|+++|++|+|..+
T Consensus 20 W~~~~~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp--~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 20 WARYKADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDP--KGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred hhhhccCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCH--HHHHHHHHHCCCeEEEEECCeeCCC
Confidence 44456678999999999999999999999999999999999999999999987 9999999999999999999999987
Q ss_pred CCchhHHHhhhcceEEecC-C-ccceeeEecCcccccCCCCHHHHHHHHHHHHHHH-hcCCCCCCCCCCCCCccccCCCC
Q 048354 211 ETNDTFDRGMKADIYIKRE-G-VPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFR-NTLASRPVFYFDDPPYKISNGGG 287 (395)
Q Consensus 211 ~~y~~~~e~~~~g~~v~~~-g-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~ 287 (395)
+ +.|+|+.++|+||+++ | .++.+.+|+|.+++||||||+|++||.+++++++ +.++..-+.+++||.+.+....
T Consensus 98 s--~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~- 174 (303)
T cd06592 98 S--ENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYV- 174 (303)
T ss_pred C--HHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccc-
Confidence 6 8899999999999987 5 6888999999999999999999999999999987 6666111223456655433211
Q ss_pred cccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCccceeecCCCCCCchHH---HHHHHHHHhccc
Q 048354 288 GKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDL---AYSILAILKVGA 364 (395)
Q Consensus 288 ~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L---~~~I~~~l~~~l 364 (395)
.. .....||.|..++++++++. +|++++||+|+|+|+++++|+||+.|+|++| +.+|+++|++||
T Consensus 175 ---~~--~~~~~~n~y~~~~~~~~~~~-------~~~~~~Rsg~~g~~~~~~~w~GD~~s~W~~~~gl~~~i~~~L~~~l 242 (303)
T cd06592 175 ---TE--DPLLNPDEYTRLYAEMVAEF-------GDLIEVRAGWRSQGLPLFVRMMDKDSSWGGDNGLKSLIPTALTMGL 242 (303)
T ss_pred ---cC--CcccCHHHHHHHHHHHHHhh-------ccceEEEeeeecCCCCeeEEcCCCCCCCCCCcCHHHHHHHHHHhhc
Confidence 11 22358999999998886542 4899999999999888999999999999877 999999999999
Q ss_pred cCCCcccCC-cCCCCC--------CCCChhhHHHHHhhcC
Q 048354 365 LVKPLEIVK-RSNFQT--------LLTSLENNLNAAVAFC 395 (395)
Q Consensus 365 ~G~p~~g~D-IgGf~g--------~~~~l~~r~~~~~~~~ 395 (395)
||+||||+| ||||.+ ..+||+.||.|++|||
T Consensus 243 sG~~~w~~D~iGGf~~~~~~~~~~~~~EL~~RW~q~g~f~ 282 (303)
T cd06592 243 LGYPFVLPDMIGGNAYGGNSDDELPDKELYIRWLQLSAFL 282 (303)
T ss_pred cCCcccCCCccCCccccccccCCCCCHHHHHHHHHHHHhC
Confidence 999999999 899975 3679999999999997
No 21
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=100.00 E-value=5.4e-53 Score=400.29 Aligned_cols=218 Identities=33% Similarity=0.465 Sum_probs=189.8
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccce--EeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDF--TLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f--~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
|||||+++|.++++|+++++++|+++||||+|++|++|+.++++| +||+++|||| ++|+++||++|+|+++|++|+
T Consensus 12 G~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp--~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 12 GYWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPNP--KSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCCH--HHHHHHHHHCCCEEEEEeChh
Confidence 999999999999999999999999999999999999999999999 9999999988 999999999999999999999
Q ss_pred eecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHH-HhcCCCCCCCCCC--CCCcccc
Q 048354 207 ISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLF-RNTLASRPVFYFD--DPPYKIS 283 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~-~~~~~~~d~~~~~--~~~~~~~ 283 (395)
| ++||.++++++ .+.++ |..++| ||.....
T Consensus 90 v---------------------------------------------~~w~~~~~~~~~~~~Gv--dg~w~D~~E~~~~~~ 122 (265)
T cd06589 90 I---------------------------------------------REWWAEVVKKLLVSLGV--DGFWTDMGEPSPGDG 122 (265)
T ss_pred H---------------------------------------------HHHHHHHHHHhhccCCC--CEEeccCCCCCcCCC
Confidence 8 78999999986 66666 433333 4332211
Q ss_pred CCCCcccccCCCccccccchHHHHHHHHHHHHHHhc-CCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhc
Q 048354 284 NGGGGKQINDRTFPASHNLYGLLEAKATHAALINVT-GKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKV 362 (395)
Q Consensus 284 ~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~-~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~ 362 (395)
.........+.+..++||+|+++++|+++|++++.. ++|||+++||+++|+|||+++|+||+.++|+.||.+|+++|++
T Consensus 123 ~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gsqry~~~W~GD~~stW~~l~~~i~~~l~~ 202 (265)
T cd06589 123 NIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGSQRYAGMWSGDNTSTWGYLRSQIPAGLTM 202 (265)
T ss_pred ccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccccCcCceeCCcccCCHHHHHHHHHHHHhh
Confidence 100000011133446999999999999999999874 8999999999999999999999999999999999999999999
Q ss_pred cccCCCcccCCcCCCCCC--CCChhhHHHHHhhcC
Q 048354 363 GALVKPLEIVKRSNFQTL--LTSLENNLNAAVAFC 395 (395)
Q Consensus 363 ~l~G~p~~g~DIgGf~g~--~~~l~~r~~~~~~~~ 395 (395)
|++|+||||+|||||.+. .+||+.||.|+++|.
T Consensus 203 ~l~G~~~~g~DigGf~~~~~~~EL~~RW~Q~g~F~ 237 (265)
T cd06589 203 SMSGIPFVGSDIGGFTGGDPSAELYVRWFQFGAFT 237 (265)
T ss_pred hccCCcccCCCcCCCCCCCCCHHHHHHHHHHhcCC
Confidence 999999999999999983 789999999999995
No 22
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.97 E-value=2.3e-31 Score=244.32 Aligned_cols=177 Identities=20% Similarity=0.238 Sum_probs=141.2
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHHH
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDR 218 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e 218 (395)
.+..+++++++|+++++|+.-|.-+.+|-.++. +++++++.++++|++..+|..-.+.. .
T Consensus 43 ~~~~a~~~~~~y~~~~~plgw~lpndgyg~~y~------------~l~~~~~~~~~~g~~~glwt~~~l~~-----~--- 102 (261)
T cd06596 43 TTDDARKVADKYKENDMPLGWMLPNDGYGCGYE------------NLKEVVDYLHANGVETGLWTQSGLRD-----I--- 102 (261)
T ss_pred chhhHHHHHHHHHhcCCCceeeccCCCCcchHH------------HHHHHHHHHHHcCCccccccccchhh-----h---
Confidence 567899999999999999999988877776651 78999999999999999984321100 0
Q ss_pred hhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcccccCCCccc
Q 048354 219 GMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNGGGGKQINDRTFPA 298 (395)
Q Consensus 219 ~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~t~~~ 298 (395)
.++....++ ...+.|. .+-|
T Consensus 103 -----------------------------------------~~ev~~~g~--~~~k~Dv------------~w~g----- 122 (261)
T cd06596 103 -----------------------------------------AKEVGAAGV--RARKTDV------------AWVG----- 122 (261)
T ss_pred -----------------------------------------hhhhccCCc--eEEeccc------------hhhc-----
Confidence 000000011 0000110 0000
Q ss_pred cccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCccceeecCCCCCCchHHHHHHHHHHhccccCCCcccCCcCCCC
Q 048354 299 SHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYAAHLTGDNAARWDDLAYSILAILKVGALVKPLEIVKRSNFQ 378 (395)
Q Consensus 299 ~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry~~~W~GD~~s~W~~L~~~I~~~l~~~l~G~p~~g~DIgGf~ 378 (395)
.+-.|++.++|++||++++.+++|||+++||+|+|+|||+++|+||+.++|+.||.+|+++|+++|||+||||+|||||.
T Consensus 123 ~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGsQRy~~~WsGD~~stWe~Lr~sI~~~L~~gLsG~p~~G~DIGGF~ 202 (261)
T cd06596 123 AGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGTQRYAGIWTGDQSGSWEYIRFHIPTYIGSGLSGQPNTTSDVDGIF 202 (261)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCCEEEEecCccccCCCCCccCCCCcCcHHHHHHHHHHHHHHHhcCCCcCccccCcCC
Confidence 23357889999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHhhcC
Q 048354 379 TLLTSLENNLNAAVAFC 395 (395)
Q Consensus 379 g~~~~l~~r~~~~~~~~ 395 (395)
+..+||+.||.|++||+
T Consensus 203 g~~~EL~vRW~Q~gaF~ 219 (261)
T cd06596 203 GGSPETYTRDLQWKAFT 219 (261)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999999995
No 23
>PF13802 Gal_mutarotas_2: Galactose mutarotase-like; PDB: 1XSI_F 1XSK_D 1WE5_E 2F2H_F 1XSJ_F 2G3N_C 2G3M_F 3POC_A 3MKK_A 3PHA_A ....
Probab=99.59 E-value=3.4e-15 Score=111.78 Aligned_cols=66 Identities=32% Similarity=0.500 Sum_probs=44.7
Q ss_pred CCcEEeCCCCCCCccccCCCCeEEEEEeccCCCcc--cCCCcccccceEEEecCCCCceEEEEEcCCCCeeEE
Q 048354 37 GSDLYGLGDHTKKTFKLKPDQKQITLWNADNAAAA--VDVNLYGAHPFYIDLRSPNGTTHGVLLLNSNGMDVV 107 (395)
Q Consensus 37 ~e~~yGlGe~~~~~~~l~~~~~~~~~~n~d~~~~~--~~~~~y~~~Pf~~s~~~~~~~~~Gvf~~n~~~~~~~ 107 (395)
||++||||||.+. ++++++++++||+|+.++. ..+++|++|||+|..+. +..||||++|++++.|+
T Consensus 1 de~~yGlGE~~~~---l~~~g~~~~~~n~D~~~~~~~~~~~lY~siPf~~~~~s--~~~yGvf~dn~~~~~~D 68 (68)
T PF13802_consen 1 DERFYGLGERFGP---LNRRGKRYRLWNTDAFGYNGPSSDPLYKSIPFFIAHRS--GKGYGVFFDNPSRTFFD 68 (68)
T ss_dssp T-EEEEESS-SS----SS-TTEEEEE-B---TSS-GTTBS-BSEEEEEEEEEEC--TCEEEEEEE-SS-EEEE
T ss_pred CCcEEcccccCCC---cccCCcEEEEEECcCCCcCCCcCccccccEeEEEEeCC--CCEEEEEEeCCCceEEC
Confidence 6899999999986 5556678999999998764 35799999999995553 44699999999998875
No 24
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.26 E-value=1.1e-11 Score=123.07 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=120.2
Q ss_pred CChHHHHHHHhhcccCCCCceEEEEeccccC-------CccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeec-
Q 048354 138 KNVSYLEGVVAGYANASIPLEVMWTDIDYMD-------AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIST- 209 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-------~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~- 209 (395)
-+++.+++.++..++.|+ +.++||.+|+. +.++|..|+++||+ +++.+++.+|++|+|+.+|+.|.+..
T Consensus 55 ~~e~~i~~~a~~~~~~G~--e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~-Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 55 ITEEKILELADAAAELGY--EYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPN-GLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp --HHHHHHHHHHHHHHT---SEEEE-SSSBCTESTTTSTTSBECBBTTTSTT-HHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CCHHHHHHHHHHHHHhCC--EEEEEcCccccccCCCcccCCceeEChhhhCC-cHHHHHHHHHHCCCeEEEEeccccccc
Confidence 379999999999988765 78999999984 25799999999998 69999999999999999999999753
Q ss_pred CCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcc
Q 048354 210 NETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNGGGGK 289 (395)
Q Consensus 210 ~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 289 (395)
++ +.|++ .-+++++.++.+-. ...+..++|++||++++|..+.+.+++.... .+..++|..... ..
T Consensus 132 ~S--~l~~~--hPdw~l~~~~~~~~---~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g-idYiK~D~n~~~-~~----- 197 (394)
T PF02065_consen 132 DS--DLYRE--HPDWVLRDPGRPPT---LGRNQYVLDLSNPEVRDYLFEVIDRLLREWG-IDYIKWDFNRDI-TE----- 197 (394)
T ss_dssp SS--CHCCS--SBGGBTCCTTSE-E---CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT--SEEEEE-TS-T-TS-----
T ss_pred hh--HHHHh--CccceeecCCCCCc---CcccceEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEeccccCC-CC-----
Confidence 33 45533 23566665432211 1124578999999999999999988765433 244444421110 00
Q ss_pred cccCCCccccccchHHHHHHHHHHHHHHhcC--CCcEEEEcccccCCC-----ccc-eeecCCCCCCchHHHHHH
Q 048354 290 QINDRTFPASHNLYGLLEAKATHAALINVTG--KRPFILSRSTFVSSG-----KYA-AHLTGDNAARWDDLAYSI 356 (395)
Q Consensus 290 ~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~--~rp~~~sRS~~~Gsq-----ry~-~~W~GD~~s~W~~L~~~I 356 (395)
......+ +. -..+.++.|+.+++... ...++-+.|+--|-. +|. ..|+.|+...++.++.+.
T Consensus 198 -~~~~~~~---~~-~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG~R~D~g~l~~~~~~w~SD~tda~~R~~iq~ 267 (394)
T PF02065_consen 198 -AGSPSLP---EG-YHRYVLGLYRLLDRLRARFPDVLIENCSSGGGRFDPGMLYYTPQSWTSDNTDALERLRIQY 267 (394)
T ss_dssp --SSTTS----GH-HHHHHHHHHHHHHHHHHHTTTSEEEE-BTTBTTTSHHHHCCSSEEESBST-SHHHHHHHHH
T ss_pred -CCCCCch---HH-HHHHHHHHHHHHHHHHHhCCCcEEEeccCCCCccccchheeccccccCCccchHHHhhhhc
Confidence 0001111 11 12334555665555432 233444444432222 333 799999998877655544
No 25
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.5e-07 Score=94.30 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=143.6
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccC-------CccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMD-------AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE 211 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-------~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~ 211 (395)
+.+++.+.++..++.+ ++.++||.+|.. ..+||-.|.++||. ++++||+.++++|++..+|+.|.+...+
T Consensus 307 t~e~ile~vk~akk~g--vE~FvlDDGwfg~rndd~~slGDWlv~seKfPs-giE~li~~I~e~Gl~fGIWlePemvs~d 383 (687)
T COG3345 307 TEEEILENVKEAKKFG--VELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPS-GIEELIEAIAENGLIFGIWLEPEMVSED 383 (687)
T ss_pred CHHHHHHHHHHHhhcC--eEEEEEccccccccCcchhhhhceecchhhccc-cHHHHHHHHHHcCCccceeecchhcccc
Confidence 7999999999887766 899999999993 35799999999997 5899999999999999999999975442
Q ss_pred CchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHH-H----hcCCCC---CCCCCCCCCcccc
Q 048354 212 TNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLF-R----NTLASR---PVFYFDDPPYKIS 283 (395)
Q Consensus 212 ~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~-~----~~~~~~---d~~~~~~~~~~~~ 283 (395)
.++|++ .-+++||-+|.|.... -+...+|++||...+.-.+.+..+ + +.+.|. .+++++.+
T Consensus 384 -Sdlfrq--HPDWvvk~~G~p~~~~---Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~----- 452 (687)
T COG3345 384 -SDLFRQ--HPDWVVKVNGYPLMAG---RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFL----- 452 (687)
T ss_pred -hHHHhh--CCCeEEecCCcccccc---ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCC-----
Confidence 278864 5789999888775432 246778899998877666655432 1 222231 11122211
Q ss_pred CCCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCcc-------c-eeecCCCCCCchHHHHH
Q 048354 284 NGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKY-------A-AHLTGDNAARWDDLAYS 355 (395)
Q Consensus 284 ~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry-------~-~~W~GD~~s~W~~L~~~ 355 (395)
+.+ +.+... |-+ |+-+.....+-|.|+-.|.-.|..|+ + ..|..|....-+.|+.
T Consensus 453 -------~~~-~l~qqr--y~l------y~l~~~l~~k~~~i~FeScasGg~r~d~gml~~~~~~w~Sd~~dAi~r~~i- 515 (687)
T COG3345 453 -------FWG-ALPQQR--YQL------YRLFDQLNLKFPHILFESCASGGERIDKGMLEYSPQLWCSDLTDAIGRLDI- 515 (687)
T ss_pred -------CCc-cccchH--HHH------HHHHHHhhhcCCCchhhhhcccccccchHHhhhcccccCCCCcchhhhccc-
Confidence 111 111122 211 55555554567777777776665543 4 7999887665444432
Q ss_pred HHHHHhccccCCC--cccCCcCCCC----CCCCChhhHHHHHh
Q 048354 356 ILAILKVGALVKP--LEIVKRSNFQ----TLLTSLENNLNAAV 392 (395)
Q Consensus 356 I~~~l~~~l~G~p--~~g~DIgGf~----g~~~~l~~r~~~~~ 392 (395)
..+.+ .=+| ++|+-|++-- +...++++|-+.|.
T Consensus 516 -qrg~s---~~~P~~~mGaHi~~~p~h~~~rm~~l~~rg~~a~ 554 (687)
T COG3345 516 -QRGGS---YTYPPESMGAHISAVPNHQARRMTSLETRGLVAH 554 (687)
T ss_pred -cccCc---ccCChHHhhhhccCCCcHHHhhhhhhhhhhHHHH
Confidence 22211 2355 7788887753 22467777776654
No 26
>PLN03231 putative alpha-galactosidase; Provisional
Probab=98.40 E-value=8.2e-06 Score=79.84 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=120.6
Q ss_pred ChHHHHHHHhhcccCCCC---ceEEEEeccccC--------------------CccceEeCCCCCCC----chHHHHHHH
Q 048354 139 NVSYLEGVVAGYANASIP---LEVMWTDIDYMD--------------------AYKDFTLDPINFPV----DPMKTFVDN 191 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~--------------------~~~~f~~d~~~FPd----p~~~~mi~~ 191 (395)
++++|++.++ +.+.|+- .+-|++|..|+. .++.+.-|++|||+ -+++.+.+.
T Consensus 16 ~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADy 94 (357)
T PLN03231 16 SEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAK 94 (357)
T ss_pred CHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHH
Confidence 7888999887 5555543 567999999973 35678889999995 248999999
Q ss_pred HHhcCCeEEeeeCceeecCC---CchhHHHhhhcceEE--ecCCccceeeEecC-cccccCCCCHHHHHHHHHHHHHHHh
Q 048354 192 LHKNGQKYVVIVDPGISTNE---TNDTFDRGMKADIYI--KREGVPYKGKVWAG-DVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 192 L~~~G~k~~~~i~P~i~~~~---~y~~~~e~~~~g~~v--~~~g~~~~~~~w~g-~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
+|++|+|+.+.+.|++.... .+|..-..-..|+-. ++.-.+-....|.. ...-+|..+|.|.+|+.+..+.|.+
T Consensus 95 vHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~ 174 (357)
T PLN03231 95 VHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS 174 (357)
T ss_pred HHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999987542 111100000000000 00000001122432 2347899999999999998888877
Q ss_pred cCCCCCCCCCCCCCccccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccC--------CCcc
Q 048354 266 TLASRPVFYFDDPPYKISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVS--------SGKY 337 (395)
Q Consensus 266 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~G--------sqry 337 (395)
=++ |..++|. .+... . . ....| ++..+++++. .||+++|=|-..+ .+.+
T Consensus 175 WGV--DylK~D~-c~~~~-----------~-~-~~~~y-----~~m~~AL~~t--GRpIv~Slc~g~~~~~~~~~~i~~~ 231 (357)
T PLN03231 175 WGI--DFIKHDC-VFGAE-----------N-P-QLDEI-----LTVSKAIRNS--GRPMIYSLSPGDGATPGLAARVAQL 231 (357)
T ss_pred hCC--CEEeecc-cCCCC-----------c-c-cHHHH-----HHHHHHHHHh--CCCeEEEecCCCCCCchhhhhhhhh
Confidence 666 6655552 11100 0 0 00112 3455566553 4999998774211 1233
Q ss_pred ceee--cCCCCCCchHHHHHHHHH
Q 048354 338 AAHL--TGDNAARWDDLAYSILAI 359 (395)
Q Consensus 338 ~~~W--~GD~~s~W~~L~~~I~~~ 359 (395)
+-.| +||+..+|+.+...+...
T Consensus 232 an~WR~s~DI~d~W~~v~~~~~~~ 255 (357)
T PLN03231 232 VNMYRVTGDDWDDWKYLVKHFDVA 255 (357)
T ss_pred cCcccccCCcccchhhHHHHHHHH
Confidence 4334 699999999988777655
No 27
>PLN02229 alpha-galactosidase
Probab=98.24 E-value=1.3e-05 Score=80.06 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=62.4
Q ss_pred ChHHHHHHHhhcccCCCC---ceEEEEeccccCC----ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 139 NVSYLEGVVAGYANASIP---LEVMWTDIDYMDA----YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
+++.|++.++.+.+.|+. .+-|.+|..|+.. .+.+..|++|||+ +++.+++.+|++|+|+.++.++++...
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~-G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPS-GIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCC-cHHHHHHHHHHCCCceEEeccCCCccc
Confidence 799999999998776655 7889999999743 5789999999998 799999999999999999999988754
No 28
>PLN02808 alpha-galactosidase
Probab=98.20 E-value=1.9e-05 Score=78.25 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=105.4
Q ss_pred ChHHHHHHHhhcccCCCC---ceEEEEeccccCC----ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC
Q 048354 139 NVSYLEGVVAGYANASIP---LEVMWTDIDYMDA----YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE 211 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~ 211 (395)
+++.|++.++.+.+.|+. .+.|.||..|+.. .+.+..|++|||+ +++.+++.+|++|+|+.++.++......
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~-G~~~lad~iH~~GlkfGiy~~~G~~tC~ 125 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPS-GIKALADYVHSKGLKLGIYSDAGTLTCS 125 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCc-cHHHHHHHHHHCCCceEEEecCCccccC
Confidence 799999999998877766 8889999999853 6799999999998 6999999999999999999987643321
Q ss_pred CchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcccc
Q 048354 212 TNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNGGGGKQI 291 (395)
Q Consensus 212 ~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 291 (395)
. ..|.+..+..+-.+.|.+=++ |..++|... ..
T Consensus 126 ~-----------------------------------~~pGs~~~e~~DA~~fA~WGv--DylK~D~C~-~~--------- 158 (386)
T PLN02808 126 K-----------------------------------TMPGSLGHEEQDAKTFASWGI--DYLKYDNCE-NT--------- 158 (386)
T ss_pred C-----------------------------------CCCcchHHHHHHHHHHHHhCC--CEEeecCcC-CC---------
Confidence 0 123334445544555554444 555554321 00
Q ss_pred cCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCC------Ccccee--ecCCCCCCchHHHHHHHHH
Q 048354 292 NDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSS------GKYAAH--LTGDNAARWDDLAYSILAI 359 (395)
Q Consensus 292 ~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gs------qry~~~--W~GD~~s~W~~L~~~I~~~ 359 (395)
+ ...+..| .+..+++.+ -.||++++=+.|... ..++-. =++|+..+|+.+...+...
T Consensus 159 -~---~~~~~~y-----~~m~~AL~~--tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~ 223 (386)
T PLN02808 159 -G---TSPQERY-----PKMSKALLN--SGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQN 223 (386)
T ss_pred -C---ccHHHHH-----HHHHHHHHH--hCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhh
Confidence 0 0112222 233445544 259998885544311 122322 3689999999888877544
No 29
>PLN02692 alpha-galactosidase
Probab=98.16 E-value=3.9e-05 Score=76.33 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=106.0
Q ss_pred ChHHHHHHHhhcccCCCC---ceEEEEeccccC----CccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC
Q 048354 139 NVSYLEGVVAGYANASIP---LEVMWTDIDYMD----AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE 211 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~ 211 (395)
+++.+++.++.+.+.|+. .+-|.||..|+. ..+.+..|++|||+ +++.+++.+|++|+|+.++.+++.....
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~-G~k~ladyiH~~GLKfGIy~d~G~~tC~ 149 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPS-GIKALADYVHSKGLKLGIYSDAGYFTCS 149 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCC-cHHHHHHHHHHCCCceEEEecCCccccC
Confidence 799999999988777665 788999999984 36789999999998 7999999999999999999987754321
Q ss_pred CchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcccc
Q 048354 212 TNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPYKISNGGGGKQI 291 (395)
Q Consensus 212 ~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 291 (395)
. ..|.+..+...-.+.|.+=|+ |..++|... ..
T Consensus 150 ~-----------------------------------~~pGS~g~e~~DA~~fA~WGv--DylK~D~C~-~~--------- 182 (412)
T PLN02692 150 K-----------------------------------TMPGSLGHEEQDAKTFASWGI--DYLKYDNCN-ND--------- 182 (412)
T ss_pred C-----------------------------------CCCCchHHHHHHHHHHHhcCC--CEEeccccC-CC---------
Confidence 0 123334455554555554444 555555321 00
Q ss_pred cCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCC------ccceee--cCCCCCCchHHHHHHHHHH
Q 048354 292 NDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSG------KYAAHL--TGDNAARWDDLAYSILAIL 360 (395)
Q Consensus 292 ~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsq------ry~~~W--~GD~~s~W~~L~~~I~~~l 360 (395)
+ + .....| ++..+++++ -.||+++|=+.|.-.. .++-.| +||+..+|+.+...+...-
T Consensus 183 -~-~--~~~~~y-----~~m~~AL~~--tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~ 248 (412)
T PLN02692 183 -G-S--KPTVRY-----PVMTRALMK--AGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNE 248 (412)
T ss_pred -C-c--chhHHH-----HHHHHHHHH--hCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHH
Confidence 0 0 011112 233445544 2499998865544322 234333 6999999998888775443
No 30
>PLN02899 alpha-galactosidase
Probab=98.04 E-value=0.00012 Score=75.49 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=117.4
Q ss_pred ChHHHHHHHhhcccCCCC---ceEEEEeccccCC-----------------ccceEeCCCCCCC----chHHHHHHHHHh
Q 048354 139 NVSYLEGVVAGYANASIP---LEVMWTDIDYMDA-----------------YKDFTLDPINFPV----DPMKTFVDNLHK 194 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd----p~~~~mi~~L~~ 194 (395)
++++|++.++. ...|+- .+-|++|..|+.. ++.+..|++|||. .+++.+.+.+|+
T Consensus 46 ~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHs 124 (633)
T PLN02899 46 SEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHA 124 (633)
T ss_pred CHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHh
Confidence 78888888873 444543 4669999999742 4578899999996 258999999999
Q ss_pred cCCeEEeeeCceeecCC---Cchh--------HHHhhhcceEEecCCccceeeEecC-cccccCCCCHHHHHHHHHHHHH
Q 048354 195 NGQKYVVIVDPGISTNE---TNDT--------FDRGMKADIYIKREGVPYKGKVWAG-DVYFPDFLNPAIETFWEGEIKL 262 (395)
Q Consensus 195 ~G~k~~~~i~P~i~~~~---~y~~--------~~e~~~~g~~v~~~g~~~~~~~w~g-~~~~~Dftnp~a~~ww~~~~~~ 262 (395)
+|+|+.+.+.+++.... +.|. |.+ .-.++-.++-+.+-..-.|.. ..--+|.+.+.+++|+....+.
T Consensus 125 kGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~-s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~t 203 (633)
T PLN02899 125 MGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEE-SGRQWRAKDIALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQ 203 (633)
T ss_pred CCcceEEEecCCCcccccccCCccccccccccccc-cccccchhhccccccccccCCCCcccccccccchhhhhHHHHHH
Confidence 99999999999986431 1111 100 001111111111111112221 1224788889999999988877
Q ss_pred HHhcCCCCCCCCCCCCCccccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCC-------
Q 048354 263 FRNTLASRPVFYFDDPPYKISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSG------- 335 (395)
Q Consensus 263 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsq------- 335 (395)
|.+=|+ |..++|.. +. . .. . . .-| ++..+++++. .||++++=|- |.+
T Consensus 204 fAsWGV--DyLKyD~c-~~--~-----~~-----~-~-~ey-----~~ms~AL~aT--GRPIvySLsp--G~~~~p~wa~ 257 (633)
T PLN02899 204 YAEWGV--DFVKHDCV-FG--D-----DF-----D-L-EEI-----TYVSEVLKEL--DRPIVYSLSP--GTSATPTMAK 257 (633)
T ss_pred HHHhCC--CEEEEcCC-CC--C-----CC-----C-h-HHH-----HHHHHHHHHh--CCCeEEEecC--Ccccchhhhh
Confidence 776555 66555521 10 0 00 0 0 112 4556666653 5999999873 322
Q ss_pred ---ccce--eecCCCCCCchHHHHHHHHH
Q 048354 336 ---KYAA--HLTGDNAARWDDLAYSILAI 359 (395)
Q Consensus 336 ---ry~~--~W~GD~~s~W~~L~~~I~~~ 359 (395)
.++- --+||...+|+.+...+...
T Consensus 258 ~v~~~aNmWRitgDI~D~W~sV~~~~d~~ 286 (633)
T PLN02899 258 EVSGLVNMYRITGDDWDTWGDVAAHFDVS 286 (633)
T ss_pred hhhccCccceecCCcccchHHHHHHHHHH
Confidence 2332 33599999999988776543
No 31
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=95.43 E-value=0.12 Score=54.13 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=77.8
Q ss_pred CChHHHHHHHhhcccCCCCceEEEEeccccCCc-------cc-eEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCce-e
Q 048354 138 KNVSYLEGVVAGYANASIPLEVMWTDIDYMDAY-------KD-FTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDPG-I 207 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~-------~~-f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P~-i 207 (395)
.+-..|.+-++-+++.|| ++|||-+-+.... .+ +..|+ +|-+. ++++|++++|++|+|||+=+-+. +
T Consensus 25 Gdl~gi~~~Ldyl~~LGv--~~i~L~Pi~~~~~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGV--DALWLLPFFQSPLRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred cCHHHHHHhHHHHHHCCC--CEEEECCCcCCCCCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 466677777777777554 7899987664321 12 23443 34332 68999999999999999855444 4
Q ss_pred ecCCCchhHHHhhh------cceEEecC-Cccce----------eeEec--------------CcccccCCCCHHHHHHH
Q 048354 208 STNETNDTFDRGMK------ADIYIKRE-GVPYK----------GKVWA--------------GDVYFPDFLNPAIETFW 256 (395)
Q Consensus 208 ~~~~~y~~~~e~~~------~g~~v~~~-g~~~~----------~~~w~--------------g~~~~~Dftnp~a~~ww 256 (395)
+.+. +.|+++.+ .++|+..+ +..+. ...|. ....-+|+.||++++..
T Consensus 102 s~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l 179 (539)
T TIGR02456 102 SDQH--PWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAV 179 (539)
T ss_pred CCCC--HHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHH
Confidence 3332 56655543 35665422 11111 01121 01234789999999999
Q ss_pred HHHHHHHHhcCC
Q 048354 257 EGEIKLFRNTLA 268 (395)
Q Consensus 257 ~~~~~~~~~~~~ 268 (395)
.+.++.+++.++
T Consensus 180 ~~~~~~w~~~Gv 191 (539)
T TIGR02456 180 HDVMRFWLDLGV 191 (539)
T ss_pred HHHHHHHHHcCC
Confidence 998888887665
No 32
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.42 E-value=0.15 Score=49.57 Aligned_cols=133 Identities=9% Similarity=0.109 Sum_probs=79.6
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCC--cc--ceEeCC----CCC----CCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDA--YK--DFTLDP----INF----PVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~--~f~~d~----~~F----Pdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
+.+++.++++.+++.| +-+|.++.-.... |. ...|.. ... -|| |+.||++-|++|+++-.|+...
T Consensus 17 ~~~~~~~~l~~l~~~~--~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~Dp-L~~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAG--FNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDP-LEFMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccH-HHHHHHHHHHcCCEEEEEEEee
Confidence 7889999999999999 5667776544321 10 001110 011 145 9999999999999999999444
Q ss_pred eecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 207 ISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
+.........+. ...-+.++.+|.......-.+...++|-.+||++++..+.++++..... .|+..||
T Consensus 94 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlD 161 (311)
T PF02638_consen 94 FNAPDVSHILKK-HPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLD 161 (311)
T ss_pred cCCCchhhhhhc-CchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEec
Confidence 432211111111 1111222333322111001245679999999999999999999876655 5665555
No 33
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=0.24 Score=49.74 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred ChHHHHHHHhhcccCCCCce--EEEEec--cccCCccceEeC------CCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 139 NVSYLEGVVAGYANASIPLE--VMWTDI--DYMDAYKDFTLD------PINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d--~i~lD~--~~~~~~~~f~~d------~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
++.++.+.++++++.|+--= .++.+- -|.....-++-+ ....=|| ++.+|++-|++|+++..|++|+..
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~Dp-La~~I~~AHkr~l~v~aWf~~~~~ 140 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDP-LAFVIAEAHKRGLEVHAWFNPYRM 140 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCCh-HHHHHHHHHhcCCeeeechhhccc
Confidence 79999999999999998732 233331 222221111111 1223354 899999999999999999999987
Q ss_pred cCCCchhHHHhhhcceEEec-CCccce-eeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 048354 209 TNETNDTFDRGMKADIYIKR-EGVPYK-GKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDDPPY 280 (395)
Q Consensus 209 ~~~~y~~~~e~~~~g~~v~~-~g~~~~-~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~~~~ 280 (395)
.....+ ... ...+..... ++..+. ...|- ...++|=.+|++++|..+.+.+...... .|+..||+--|
T Consensus 141 a~~~s~-~~~-~~p~~~~~~~~~~~~~~~~~~~-~~~~ldPg~Pevq~~i~~lv~evV~~Yd-vDGIQfDd~fy 210 (418)
T COG1649 141 APPTSP-LTK-RHPHWLTTKRPGWVYVRHQGWG-KRVWLDPGIPEVQDFITSLVVEVVRNYD-VDGIQFDDYFY 210 (418)
T ss_pred CCCCCh-hHh-hCCCCcccCCCCeEEEecCCce-eeeEeCCCChHHHHHHHHHHHHHHhCCC-CCceecceeec
Confidence 553211 111 122222222 233222 11110 5688999999999999999988776665 57777765444
No 34
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=94.52 E-value=0.28 Score=51.61 Aligned_cols=126 Identities=15% Similarity=0.322 Sum_probs=74.5
Q ss_pred CChHHHHHHHhhcccCCCCceEEEEeccccCCcc-------c-eEeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCce-e
Q 048354 138 KNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYK-------D-FTLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDPG-I 207 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~-------~-f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~-i 207 (395)
.+-..+.+.++.+++.|| ++|||-+-+..... + +..|+ +|-. .++++|++++|++|+||++=+-+. +
T Consensus 30 Gdl~gi~~~ldyl~~lGv--~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGV--DAIWLTPFYVSPQVDNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred cCHHHHHHhhHHHHhCCC--CEEEECCCCCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 356667777888887766 77999876642211 1 22332 2322 268999999999999999855444 3
Q ss_pred ecCCCchhHHHhhh-----cceEEecCCc------cce----eeE--ecC------------cccccCCCCHHHHHHHHH
Q 048354 208 STNETNDTFDRGMK-----ADIYIKREGV------PYK----GKV--WAG------------DVYFPDFLNPAIETFWEG 258 (395)
Q Consensus 208 ~~~~~y~~~~e~~~-----~g~~v~~~g~------~~~----~~~--w~g------------~~~~~Dftnp~a~~ww~~ 258 (395)
+.+ .+-|+++.+ .++|+-..+. .+. +.. |.. ...-+|+.||++++...+
T Consensus 107 s~~--~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~ 184 (551)
T PRK10933 107 STQ--HAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKK 184 (551)
T ss_pred cCc--hhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHH
Confidence 332 245554421 2455422210 000 111 110 123467899999999999
Q ss_pred HHHHHHhcCC
Q 048354 259 EIKLFRNTLA 268 (395)
Q Consensus 259 ~~~~~~~~~~ 268 (395)
.++.+++.++
T Consensus 185 ~~~~W~~~Gv 194 (551)
T PRK10933 185 VCEFWADRGV 194 (551)
T ss_pred HHHHHHHCCC
Confidence 8888887766
No 35
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.50 E-value=0.059 Score=51.30 Aligned_cols=127 Identities=21% Similarity=0.407 Sum_probs=74.2
Q ss_pred HHHHHHhhcccCCCCceEEEEeccccCC-----cc--ce-EeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCc-eeecCC
Q 048354 142 YLEGVVAGYANASIPLEVMWTDIDYMDA-----YK--DF-TLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDP-GISTNE 211 (395)
Q Consensus 142 ~v~~~~~~~r~~~iP~d~i~lD~~~~~~-----~~--~f-~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P-~i~~~~ 211 (395)
-+.+-++.+++.|| ++|||-+-+... |. +| ..|+ +|-. .++++||+++|++|+|||+=+-+ +++...
T Consensus 5 gi~~kLdyl~~lGv--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 5 GIIDKLDYLKDLGV--NAIWLSPIFESPNGYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDH 81 (316)
T ss_dssp HHHHTHHHHHHHTE--SEEEESS-EESSSSTTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTS
T ss_pred HHHHhhHHHHHcCC--Cceecccccccccccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecccccccc
Confidence 34555666666554 779887655432 21 33 4565 4432 26999999999999999996655 555554
Q ss_pred CchhHHHhh------hcceEEecC--------------CccceeeEec------CcccccCCCCHHHHHHHHHHHHHHHh
Q 048354 212 TNDTFDRGM------KADIYIKRE--------------GVPYKGKVWA------GDVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 212 ~y~~~~e~~------~~g~~v~~~--------------g~~~~~~~w~------g~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
+.+++.. ..++++-.+ +..+....|. ....-+|+.||++++...+.++.+++
T Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~ 159 (316)
T PF00128_consen 82 --PWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE 159 (316)
T ss_dssp --HHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH
T ss_pred --ccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh
Confidence 4443322 234444210 1111111111 11345678999999999998888777
Q ss_pred cCCCCCCCCC
Q 048354 266 TLASRPVFYF 275 (395)
Q Consensus 266 ~~~~~d~~~~ 275 (395)
.++ |++-+
T Consensus 160 ~gi--DGfR~ 167 (316)
T PF00128_consen 160 EGI--DGFRL 167 (316)
T ss_dssp TTE--SEEEE
T ss_pred ceE--eEEEE
Confidence 665 54433
No 36
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.11 E-value=0.9 Score=44.14 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=79.1
Q ss_pred cccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCC-----------CCC-CCchHHHHHHHHHhcCCeE
Q 048354 132 QCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDP-----------INF-PVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 132 qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~-----------~~F-Pdp~~~~mi~~L~~~G~k~ 199 (395)
.+.+.-.+.+.+.++++.+++.+| .++++|.- ++.+.-+++. +.+ . ++++|++.||++|+.+
T Consensus 4 lt~~~a~~~~~~~~~~~~i~~t~l--NavVIDvK--dd~G~i~y~s~~~~~~~~ga~~~~i~--D~~~l~~~l~e~gIY~ 77 (316)
T PF13200_consen 4 LTAYSAGSPERLDKLLDLIKRTEL--NAVVIDVK--DDDGNITYDSQVPLAREIGAVKPYIK--DLKALVKKLKEHGIYP 77 (316)
T ss_pred echhhcCCHHHHHHHHHHHHhcCC--ceEEEEEe--cCCceEEecCCCchhhhccccccccc--CHHHHHHHHHHCCCEE
Confidence 445555677888999999998887 55777753 3333333321 122 4 5599999999999999
Q ss_pred EeeeCceeecCCCchhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC
Q 048354 200 VVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 200 ~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~ 268 (395)
+..|--+ + | +...+. ...+-++.. |+++... ....|+|-++++++++--+..++....|-
T Consensus 78 IARIv~F-k-D---~~la~~-~pe~av~~~~G~~w~d~---~~~~WvnP~~~evw~Y~i~IA~Eaa~~GF 138 (316)
T PF13200_consen 78 IARIVVF-K-D---PVLAEA-HPEWAVKTKDGSVWRDN---EGEAWVNPYSKEVWDYNIDIAKEAAKLGF 138 (316)
T ss_pred EEEEEEe-c-C---hHHhhh-ChhhEEECCCCCcccCC---CCCccCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 8877333 1 3 233232 334555544 5543321 23679999999999998888787766554
No 37
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=93.05 E-value=0.65 Score=48.79 Aligned_cols=126 Identities=18% Similarity=0.396 Sum_probs=76.4
Q ss_pred CChHHHHHHHhhcccCCCCceEEEEeccccCC-----c--cc-eEeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCce-e
Q 048354 138 KNVSYLEGVVAGYANASIPLEVMWTDIDYMDA-----Y--KD-FTLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDPG-I 207 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-----~--~~-f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~-i 207 (395)
.+-..+.+.++.+++.|| ++|||-+-+... | .+ +..|+. |-. .++++|++++|++|+||++=+-|. +
T Consensus 24 G~~~gi~~~l~yl~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~id~~-~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGV--DYIWLNPFYVSPQKDNGYDVSDYYAINPL-FGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred cCHHHHHHhHHHHHHcCC--CEEEECCcccCCCCCCCCCccccCccCcc-cCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 356667777777777555 779998876532 1 12 334543 332 269999999999999999865553 4
Q ss_pred ecCCCchhHHHhhh-----cceEEecC--Ccc---ce----eeEecCc--------------ccccCCCCHHHHHHHHHH
Q 048354 208 STNETNDTFDRGMK-----ADIYIKRE--GVP---YK----GKVWAGD--------------VYFPDFLNPAIETFWEGE 259 (395)
Q Consensus 208 ~~~~~y~~~~e~~~-----~g~~v~~~--g~~---~~----~~~w~g~--------------~~~~Dftnp~a~~ww~~~ 259 (395)
+.+ .+.|+++.+ .++|+-.. |.+ +. +..|... ..-+|+.||++++...+.
T Consensus 101 ~~~--~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~ 178 (543)
T TIGR02403 101 STE--HEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDV 178 (543)
T ss_pred ccc--hHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHH
Confidence 333 245555432 24553221 111 10 1123211 124678999999998888
Q ss_pred HHHHHhcCC
Q 048354 260 IKLFRNTLA 268 (395)
Q Consensus 260 ~~~~~~~~~ 268 (395)
++.+++.++
T Consensus 179 ~~~W~~~gi 187 (543)
T TIGR02403 179 VNFWRDKGV 187 (543)
T ss_pred HHHHHHcCC
Confidence 887777666
No 38
>PRK10785 maltodextrin glucosidase; Provisional
Probab=91.86 E-value=1.1 Score=47.54 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=72.1
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCC--cc-----ceEeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCc-eeec
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDA--YK-----DFTLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDP-GIST 209 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~-----~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P-~i~~ 209 (395)
+-+-|.+-++-+++.|| ++|||-+-+... .+ .+..|+ +|-. .++++|++++|++|+|||+=+-+ +++.
T Consensus 177 Dl~GI~~kLdYL~~LGv--~~I~L~Pif~s~s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGV--TALYLNPIFTAPSVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCcccCCCCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 56677777888887665 779998865432 11 223343 3332 26899999999999999985544 3333
Q ss_pred CCCchhHHHhhh-------------cceEEecC-CccceeeEecCcccc--cCCCCHHHHHHHHH----HHHHHHhc
Q 048354 210 NETNDTFDRGMK-------------ADIYIKRE-GVPYKGKVWAGDVYF--PDFLNPAIETFWEG----EIKLFRNT 266 (395)
Q Consensus 210 ~~~y~~~~e~~~-------------~g~~v~~~-g~~~~~~~w~g~~~~--~Dftnp~a~~ww~~----~~~~~~~~ 266 (395)
+. +.|++..+ .++|.-.+ |. + ..|.|.... +|+.||++++...+ .++.+++.
T Consensus 254 ~~--~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~-~--~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~ 325 (598)
T PRK10785 254 SH--PWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR-A--LDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKA 325 (598)
T ss_pred CC--HHHHHhhccccccccCCCCCcceeeEECCCCC-c--CCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcC
Confidence 32 45544321 23443222 21 1 245554444 45889999998764 56666664
No 39
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=90.03 E-value=1.4 Score=37.22 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCeEEeeeCceeecCCCchhHHHhhhcceEEecC-CccceeeEecCc-ccccCCCCHHHHHHHHHHHHH
Q 048354 185 MKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKRE-GVPYKGKVWAGD-VYFPDFLNPAIETFWEGEIKL 262 (395)
Q Consensus 185 ~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~-g~~~~~~~w~g~-~~~~Dftnp~a~~ww~~~~~~ 262 (395)
+.++++.+|+.|+|+++.++... +. ..++ ..-+++++++ |++.....+... -...-+ |..-++...+++++
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~--d~--~~~~--~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~-ns~Y~e~~~~~i~E 118 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSW--DE--DAAE--RHPEWFVRDADGRPMRGERFGYPGWYTCCL-NSPYREFLLEQIRE 118 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeec--Ch--HHHH--hCCceeeECCCCCCcCCCCcCCCCceecCC-CccHHHHHHHHHHH
Confidence 79999999999999999998883 22 2332 4567888877 775221111111 122333 34455777778887
Q ss_pred HHhcCC
Q 048354 263 FRNTLA 268 (395)
Q Consensus 263 ~~~~~~ 268 (395)
+++...
T Consensus 119 i~~~y~ 124 (132)
T PF14871_consen 119 ILDRYD 124 (132)
T ss_pred HHHcCC
Confidence 776443
No 40
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.34 E-value=1.8 Score=46.24 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=71.1
Q ss_pred ChHHHHHH-HhhcccCCCCceEEEEeccccC------Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-e
Q 048354 139 NVSYLEGV-VAGYANASIPLEVMWTDIDYMD------AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP-G 206 (395)
Q Consensus 139 ~~~~v~~~-~~~~r~~~iP~d~i~lD~~~~~------~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~ 206 (395)
+-..+.+- ++-+++.|| .+|+|=+-+.. +| ..|..+ .+|..| ++++||+.+|++|++|++-+-+ +
T Consensus 154 ~~~~i~~~l~dyl~~LGv--t~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 154 SYRELADQLIPYVKELGF--THIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 44554444 477788776 55887553321 11 123333 256544 6999999999999999996654 3
Q ss_pred eecCCCchhHHHhhhcc-eEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 207 ISTNETNDTFDRGMKAD-IYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g-~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
...+. ..+....... ++...+.... ...|. ..-+|+.||++|++..+.++.+++... .|+.-+|
T Consensus 231 ~~~~~--~~~~~~~~~~~y~~~~~~~~~-~~~w~--~~~~~~~~~~Vr~~l~~~~~~W~~ey~-iDG~R~D 295 (613)
T TIGR01515 231 FPKDD--HGLAEFDGTPLYEHKDPRDGE-HWDWG--TLIFDYGRPEVRNFLVANALYWAEFYH-IDGLRVD 295 (613)
T ss_pred cCCcc--chhhccCCCcceeccCCccCc-CCCCC--CceecCCCHHHHHHHHHHHHHHHHHhC-CcEEEEc
Confidence 43332 1111100001 1111110000 11232 345799999999999999988876532 2554443
No 41
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=88.08 E-value=0.77 Score=49.12 Aligned_cols=141 Identities=12% Similarity=0.141 Sum_probs=82.0
Q ss_pred ccccccCCC----CChHHHHHHHhhcccCCCCceEEEEeccccCC--------------------ccceEeCCC------
Q 048354 129 GFHQCRYGY----KNVSYLEGVVAGYANASIPLEVMWTDIDYMDA--------------------YKDFTLDPI------ 178 (395)
Q Consensus 129 G~~qsr~~y----~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~--------------------~~~f~~d~~------ 178 (395)
|+--|.|.- -+++.|++.++.+.+.++|+.-+.||.+|+.- ...|+=|++
T Consensus 200 ~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~~~ 279 (775)
T PLN02219 200 WFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKNDQ 279 (775)
T ss_pred eeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCceEEEEccCccccccccccccccccccchhhhhhcccccccccccccc
Confidence 566677752 27889999999999999999999999999842 112332321
Q ss_pred --CCCCchHHHHHHHHHh-cCCeEE-eee-----CceeecCC-CchhHHHhhhcceEEecCCc----ccee--eEecCcc
Q 048354 179 --NFPVDPMKTFVDNLHK-NGQKYV-VIV-----DPGISTNE-TNDTFDRGMKADIYIKREGV----PYKG--KVWAGDV 242 (395)
Q Consensus 179 --~FPdp~~~~mi~~L~~-~G~k~~-~~i-----~P~i~~~~-~y~~~~e~~~~g~~v~~~g~----~~~~--~~w~g~~ 242 (395)
.||. +++.+++.+|+ .|+|.| +|. |-+|..+. .-+.|+.-. -+-+..+|. |-.. ..-.+..
T Consensus 280 ~~~fp~-Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~--~~p~~spg~~~~~pd~a~d~l~~~G~ 356 (775)
T PLN02219 280 KNEQVS-GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSAL--AYPVQSPGVLGNQPDIVMDSLSVHGL 356 (775)
T ss_pred ccCCCC-cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccc--cccccCCCccccCcchhhhhhhhCCc
Confidence 4776 79999999996 688865 332 12223221 112232211 112222211 1000 0000112
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 243 YFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 243 ~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
.++| -+++.++|.+.+..|.+.|+ |..+.|
T Consensus 357 glV~--P~~~~~FYd~~hsyLas~GV--DgVKVD 386 (775)
T PLN02219 357 GLVN--PKKVFNFYNELHAYLASCGV--DGVKVD 386 (775)
T ss_pred cccC--HHHHHHHHHHHHHHHHHcCC--CEEEEc
Confidence 3442 24567899998888888777 655544
No 42
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.03 E-value=1.1 Score=48.18 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCeEEeeeCc-eeecCC-Cchh--HHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDP-GISTNE-TNDT--FDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEG 258 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P-~i~~~~-~y~~--~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 258 (395)
++++||+.+|++|+||++=+-. +..... .-+. ++......|+..+. |. + ..|.+...-+++.||+++++..+
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~-~--~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGD-Y--HNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCC-c--CCCCCccCcccCCCHHHHHHHHH
Confidence 5999999999999999985433 333211 0011 11111223333222 22 1 23445445678899999999999
Q ss_pred HHHHHHhc-CCCCCCCCC
Q 048354 259 EIKLFRNT-LASRPVFYF 275 (395)
Q Consensus 259 ~~~~~~~~-~~~~d~~~~ 275 (395)
.++.+++. ++ |++-|
T Consensus 320 ~l~~W~~e~gV--DGFRf 335 (658)
T PRK03705 320 CLRYWVETCHV--DGFRF 335 (658)
T ss_pred HHHHHHHHhCC--CEEEE
Confidence 99887765 44 55433
No 43
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=87.80 E-value=3.7 Score=42.10 Aligned_cols=126 Identities=17% Similarity=0.337 Sum_probs=73.0
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCC---cc----ceE-eCCCCCCC-chHHHHHHHHHhcCCeEEeeeCceeec
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDA---YK----DFT-LDPINFPV-DPMKTFVDNLHKNGQKYVVIVDPGIST 209 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~---~~----~f~-~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~i~~ 209 (395)
+-.-|.+-++-+++.|+ ++||+-+-+... .+ ++. .|+ .|.. .+++++++.+|++|+|+++=+......
T Consensus 27 dl~Gi~~~LdYl~~LGv--~aiwl~Pi~~s~~~~~gY~~~Dy~~id~-~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s 103 (505)
T COG0366 27 DLKGITEKLDYLKELGV--DAIWLSPIFESPQADHGYDVSDYTKVDP-HFGTEEDFKELVEEAHKRGIKVILDLVFNHTS 103 (505)
T ss_pred cHHhHHHhhhHHHHhCC--CEEEeCCCCCCCccCCCccccchhhcCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence 44555566667776665 889998876642 11 222 333 4443 268999999999999999855422221
Q ss_pred CCCchhHHHhhhc-------ceEE-ec-------CC---ccceeeEe-----------c-Cc-ccccCCCCHHHHHHHHH
Q 048354 210 NETNDTFDRGMKA-------DIYI-KR-------EG---VPYKGKVW-----------A-GD-VYFPDFLNPAIETFWEG 258 (395)
Q Consensus 210 ~~~y~~~~e~~~~-------g~~v-~~-------~g---~~~~~~~w-----------~-g~-~~~~Dftnp~a~~ww~~ 258 (395)
+ ..+.+.++.+. .+++ +. +. ..+.+..| - .. ..-+++.||+++++..+
T Consensus 104 ~-~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~ 182 (505)
T COG0366 104 D-EHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLD 182 (505)
T ss_pred C-ccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHH
Confidence 1 23445554422 3444 11 00 00111112 1 11 22368999999999999
Q ss_pred HHHHHHhcCC
Q 048354 259 EIKLFRNTLA 268 (395)
Q Consensus 259 ~~~~~~~~~~ 268 (395)
.++.+++.++
T Consensus 183 ~~~~W~~~gv 192 (505)
T COG0366 183 VVKFWLDKGV 192 (505)
T ss_pred HHHHHHHcCC
Confidence 8888887666
No 44
>PRK12313 glycogen branching enzyme; Provisional
Probab=87.45 E-value=2.6 Score=45.15 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=70.0
Q ss_pred CChHHHH-HHHhhcccCCCCceEEEEeccccC------Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-
Q 048354 138 KNVSYLE-GVVAGYANASIPLEVMWTDIDYMD------AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP- 205 (395)
Q Consensus 138 ~~~~~v~-~~~~~~r~~~iP~d~i~lD~~~~~------~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P- 205 (395)
.+-..+. ++++-+++.|| ++|||=+=+.. +| ..|..++ +|-.+ ++++||+++|++|++|++=+-|
T Consensus 167 g~~~~~~~~ll~yl~~LGv--~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 167 LSYRELADELIPYVKEMGY--THVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred cCHHHHHHHHHHHHHHcCC--CEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444444 34577788776 56887653321 11 1233333 34433 6999999999999999996544
Q ss_pred eeecCCCc-hhHHHhhhcceE-EecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc-CCCCCCCCCC
Q 048354 206 GISTNETN-DTFDRGMKADIY-IKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT-LASRPVFYFD 276 (395)
Q Consensus 206 ~i~~~~~y-~~~~e~~~~g~~-v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~-~~~~d~~~~~ 276 (395)
+...+... ..|+ ...++ ..++...+ ...|. ..-+|+.||+++++..+.++.+++. ++ |+.-+|
T Consensus 244 H~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~w~--~~~~n~~~~~vr~~l~~~~~~W~~~~~i--DG~R~D 309 (633)
T PRK12313 244 HFPKDDDGLAYFD---GTPLYEYQDPRRAE-NPDWG--ALNFDLGKNEVRSFLISSALFWLDEYHL--DGLRVD 309 (633)
T ss_pred CCCCCcccccccC---CCcceeecCCCCCc-CCCCC--CcccCCCCHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 33333210 0110 00011 11110011 11242 2457999999999999988887765 44 554444
No 45
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=87.06 E-value=1.9 Score=46.35 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhcCCeEEe-eeCceeec----CCCchhHHHhhhcceEEe-cCCccceeeEecCcccccCCCCHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVV-IVDPGIST----NETNDTFDRGMKADIYIK-REGVPYKGKVWAGDVYFPDFLNPAIETFWE 257 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~-~i~P~i~~----~~~y~~~~e~~~~g~~v~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 257 (395)
++|.||+.||+.|+.|++ .|-.+... .+. ..| ++...++|-+ ++...| .-+.|.+.-+..++|-+|+|.-
T Consensus 266 EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t-~~f-~~id~~~Yyr~~~dg~~--~N~TGcGNtln~~hpmvrk~iv 341 (697)
T COG1523 266 EFKDMVKALHKAGIEVILDVVFNHTAEGNELGPT-LSF-RGIDPNYYYRLDPDGYY--SNGTGCGNTLNTEHPMVRKLIV 341 (697)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCcccccCcCcc-ccc-ccCCcCceEEECCCCCe--ecCCccCcccccCChHHHHHHH
Confidence 789999999999999988 44445432 111 223 4555555433 332112 2245666688999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCC
Q 048354 258 GEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 258 ~~~~~~~~~~~~~d~~~~~ 276 (395)
+-|+.+..... .|++-||
T Consensus 342 DsLrYWv~e~h-VDGFRFD 359 (697)
T COG1523 342 DSLRYWVEEYH-VDGFRFD 359 (697)
T ss_pred HHHHHHHHHhC-CCceeec
Confidence 99998877654 4666554
No 46
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=86.84 E-value=1.3 Score=51.04 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCeEEeeeCc-eeecCCCch---hHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDP-GISTNETND---TFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGE 259 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P-~i~~~~~y~---~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 259 (395)
++++||+.+|++|++||+=+-+ +...+..+. .+......-||...++.+..-..|.|....+|+.||+++++..+.
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~ 327 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDV 327 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHH
Confidence 6899999999999999985543 333322111 011111122332222222112234566678999999999999998
Q ss_pred HHHHHhcCC
Q 048354 260 IKLFRNTLA 268 (395)
Q Consensus 260 ~~~~~~~~~ 268 (395)
++.+++.++
T Consensus 328 lr~Wv~~gV 336 (1221)
T PRK14510 328 LRSWAKRGV 336 (1221)
T ss_pred HHHHHHhCC
Confidence 888776444
No 47
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=86.50 E-value=1.1 Score=48.09 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=53.9
Q ss_pred ccccccCCC----CChHHHHHHHhhcccCCCCceEEEEeccccCCc--------------------cceEeCCCCCCC--
Q 048354 129 GFHQCRYGY----KNVSYLEGVVAGYANASIPLEVMWTDIDYMDAY--------------------KDFTLDPINFPV-- 182 (395)
Q Consensus 129 G~~qsr~~y----~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~--------------------~~f~~d~~~FPd-- 182 (395)
++--|.|.. -+++.|++.++.+.+.++|+.-+.||.+|+.-. ..|+=|. +||+
T Consensus 204 ~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~~n~-KF~~~~ 282 (758)
T PLN02355 204 WFGWCTWDAFYTNVTAEGVKQGLESLEKGGVTPKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIKENH-KFQKNG 282 (758)
T ss_pred eeeEEehhHhhccCCHHHHHHHHHHHHhCCCCccEEEEeccccccccccccccccccccchhhhhhccccccc-cccccc
Confidence 455577753 278899999999999999999999999998621 1233333 5663
Q ss_pred ----------chHHHHHHHHHh-cCCeEE
Q 048354 183 ----------DPMKTFVDNLHK-NGQKYV 200 (395)
Q Consensus 183 ----------p~~~~mi~~L~~-~G~k~~ 200 (395)
.+++.+++.+|+ .|+|.|
T Consensus 283 ~~~~~~~~~~~Glk~~V~~iK~~~~vk~V 311 (758)
T PLN02355 283 KEGHRVDDPALGLGHIVTEIKEKHSLKYV 311 (758)
T ss_pred cccccccCCCCcHHHHHHHHHhhcCCcEE
Confidence 379999999997 688875
No 48
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=86.24 E-value=1.3 Score=47.56 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=53.5
Q ss_pred ccccccCC--C--CChHHHHHHHhhcccCCCCceEEEEeccccCC--c-----------------------cceEeC---
Q 048354 129 GFHQCRYG--Y--KNVSYLEGVVAGYANASIPLEVMWTDIDYMDA--Y-----------------------KDFTLD--- 176 (395)
Q Consensus 129 G~~qsr~~--y--~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~--~-----------------------~~f~~d--- 176 (395)
+|--|.|. | -+++.|++-++.+++.|||..-+.||.+|++- . ..|+=|
T Consensus 214 ~fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~KF 293 (777)
T PLN02711 214 KFGWCTWDAFYLTVHPQGVWEGVKGLVDGGCPPGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENYKF 293 (777)
T ss_pred cceEEehhHhcccCCHHHHHHHHHHHHhCCCCccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccccc
Confidence 67778885 2 26889999999999999999999999999951 0 022223
Q ss_pred ------CCCCCCchHHHHHHHHHhc--CCeEE
Q 048354 177 ------PINFPVDPMKTFVDNLHKN--GQKYV 200 (395)
Q Consensus 177 ------~~~FPdp~~~~mi~~L~~~--G~k~~ 200 (395)
++.||. +|+.+++.||++ |+|.|
T Consensus 294 ~~~~~~~~~~p~-Glk~~v~~iK~~~~~vk~V 324 (777)
T PLN02711 294 RDYVSPKSLSNK-GMGAFIRDLKEEFKTVDYV 324 (777)
T ss_pred cccccccCCCCC-cHHHHHHHHHhhCCCCCEE
Confidence 233454 799999999995 68765
No 49
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=85.96 E-value=1.7 Score=46.92 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhcCCeEEeeeCc-eeecCCCc---hhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDP-GISTNETN---DTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGE 259 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P-~i~~~~~y---~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 259 (395)
++++||+.+|++|++|++=+-+ +....... ..++......||-..+..+..-..|.|...-+|+.||+++++..+.
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~ 325 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDS 325 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHH
Confidence 5899999999999999985543 33322100 0111111112332222111111123344456899999999999998
Q ss_pred HHHHHhc-CCCCCCCCC
Q 048354 260 IKLFRNT-LASRPVFYF 275 (395)
Q Consensus 260 ~~~~~~~-~~~~d~~~~ 275 (395)
++.++.. ++ |++-|
T Consensus 326 l~~W~~e~gI--DGfR~ 340 (688)
T TIGR02100 326 LRYWVTEMHV--DGFRF 340 (688)
T ss_pred HHHHHHHcCC--cEEEE
Confidence 8887753 44 54433
No 50
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=85.82 E-value=1.2 Score=47.71 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=54.2
Q ss_pred ccccccCCC--C--ChHHHHHHHhhcccCCCCceEEEEeccccCCcc-------------------ceEeCCCCCCC---
Q 048354 129 GFHQCRYGY--K--NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYK-------------------DFTLDPINFPV--- 182 (395)
Q Consensus 129 G~~qsr~~y--~--~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~-------------------~f~~d~~~FPd--- 182 (395)
|+--|.|.- . +++.|++.++.+.+.++|+.-+.||.+|+.-.. .|+=+ ++||+
T Consensus 203 ~fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~~ 281 (750)
T PLN02684 203 YFGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPPKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKDD 281 (750)
T ss_pred eeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCceEEEEecccccccccccccccccccchhhhhhccCccc-cccccccC
Confidence 666677752 2 688999999999999999999999999985211 13222 45664
Q ss_pred --chHHHHHHHHH-hcCCeEE
Q 048354 183 --DPMKTFVDNLH-KNGQKYV 200 (395)
Q Consensus 183 --p~~~~mi~~L~-~~G~k~~ 200 (395)
.+++.+++.|| +.|+|.|
T Consensus 282 p~~Glk~~V~~iK~~~~vk~V 302 (750)
T PLN02684 282 PNVGIKNIVNIAKEKHGLKYV 302 (750)
T ss_pred CCccHHHHHHHHHhhcCCcEE
Confidence 48999999998 4688865
No 51
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=85.56 E-value=2.6 Score=40.94 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=62.0
Q ss_pred CceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhH-HHhh---hcceEEecCCc
Q 048354 156 PLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTF-DRGM---KADIYIKREGV 231 (395)
Q Consensus 156 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~-~e~~---~~g~~v~~~g~ 231 (395)
+.|.+++|++.-.. +...|+ ++-|+.||..|.+++..+.-+-. +.|..| ++.. ...++ |.
T Consensus 64 ~~d~vVID~~~~g~------~~~~fs----~~~i~~Lk~~g~~viaYlSvGe~--E~~R~y~~~~~~~~~~~~l----~~ 127 (315)
T TIGR01370 64 PFELVVIDYSKDGT------EDGTYS----PEEIVRAAAAGRWPIAYLSIGAA--EDYRFYWQKGWKVNAPAWL----GN 127 (315)
T ss_pred CCCEEEEccccccC------cccCCC----HHHHHHHHhCCcEEEEEEEchhc--cccchhhhhhhhcCCHHHh----CC
Confidence 58889999765321 112344 55678899999988776543321 222222 2211 11222 22
Q ss_pred cceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 048354 232 PYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDD 277 (395)
Q Consensus 232 ~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~ 277 (395)
+ ...||| ..++|+.+|+-++...++++.+.+.|- |+..+|.
T Consensus 128 ~--n~~W~g-~~~vd~~~~~W~~il~~rl~~l~~kGf--DGvfLD~ 168 (315)
T TIGR01370 128 E--DPDWPG-NYDVKYWDPEWKAIAFSYLDRVIAQGF--DGVYLDL 168 (315)
T ss_pred C--CCCCCC-ceeEecccHHHHHHHHHHHHHHHHcCC--CeEeecc
Confidence 1 245888 489999999988888888877777776 6666653
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=85.01 E-value=2.9 Score=36.65 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred CChHHHHHHHhhcccCCCCceEEEEeccccCCc---cceEeCCC-------CCCCc-hHHHHHHHHHhcCCeEEeeeCce
Q 048354 138 KNVSYLEGVVAGYANASIPLEVMWTDIDYMDAY---KDFTLDPI-------NFPVD-PMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~---~~f~~d~~-------~FPdp-~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
.+-+.+.+.++.+++.| +++||+-+-+.... .++-+++. +|-.. ++++|++++|++|+|+++=+-|.
T Consensus 16 G~~~gi~~~l~yl~~lG--~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 16 GDLQGIIEKLDYLKDLG--VTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred cCHHHHHHHHHHHHHCC--CCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 35666777777778777 57899887544321 11222222 33222 68999999999999999865443
No 53
>PRK14706 glycogen branching enzyme; Provisional
Probab=84.85 E-value=8.2 Score=41.40 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=64.6
Q ss_pred HHHHHhhcccCCCCceEEEEecccc----C--Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-eeecCC
Q 048354 143 LEGVVAGYANASIPLEVMWTDIDYM----D--AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP-GISTNE 211 (395)
Q Consensus 143 v~~~~~~~r~~~iP~d~i~lD~~~~----~--~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~i~~~~ 211 (395)
+.++++-+++.|+-+ |+|=+=.. . +| ..|..+ .+|-.| ++++||+++|++|++|++=+-| +...+.
T Consensus 170 ~~~l~~ylk~lG~t~--velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 170 AHRLGEYVTYMGYTH--VELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE 246 (639)
T ss_pred HHHHHHHHHHcCCCE--EEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch
Confidence 344456778888653 44322111 0 12 123333 345443 6999999999999999985544 333321
Q ss_pred CchhHHHhhhcc-eEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 212 TNDTFDRGMKAD-IYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 212 ~y~~~~e~~~~g-~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
. .. ......- +...++ ..-....|. ....|+.||+++++..+.++.+++... .|+.-+|
T Consensus 247 ~-~l-~~~dg~~~y~~~~~-~~g~~~~w~--~~~~~~~~~eVr~~l~~~~~~W~~e~~-iDG~R~D 306 (639)
T PRK14706 247 S-GL-AHFDGGPLYEYADP-RKGYHYDWN--TYIFDYGRNEVVMFLIGSALKWLQDFH-VDGLRVD 306 (639)
T ss_pred h-hh-hccCCCcceeccCC-cCCcCCCCC--CcccCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEe
Confidence 0 00 0000000 001111 000011242 245899999999999998888775433 3554444
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.12 E-value=3 Score=43.82 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=70.2
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccC------Ccc---ceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-ee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMD------AYK---DFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP-GI 207 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~------~~~---~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~i 207 (395)
+-..+.+.++.+++.|| ++|||-+-+.- +|. .|..++ +|-.+ ++++||+.+|++|++|++=+-+ ++
T Consensus 109 ~~~gi~~~l~yl~~LGv--~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGI--TAIELMPVAQFPGTRGWGYDGVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred CHHHHHHhhHHHHHcCC--CEEEeCccccCCCCCCCCCCccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 55666677777777776 56877653221 111 222222 34333 6999999999999999985543 34
Q ss_pred ecCCCch-hHHHhhhcceEEecCCccceeeEecCcccccCCCCH---HHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 208 STNETND-TFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNP---AIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 208 ~~~~~y~-~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp---~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
..+..|. .| ..+|-... ...| | .-+|+.|| +++++..+.++.+++... .|++-+|
T Consensus 186 ~~~~~~~~~~-----~~y~~~~~-----~~~w-g--~~~n~~~~~~~~vr~~i~~~~~~W~~e~~-iDGfR~D 244 (542)
T TIGR02402 186 GPEGNYLPRY-----APYFTDRY-----STPW-G--AAINFDGPGSDEVRRYILDNALYWLREYH-FDGLRLD 244 (542)
T ss_pred CCcccccccc-----CccccCCC-----CCCC-C--CccccCCCcHHHHHHHHHHHHHHHHHHhC-CcEEEEe
Confidence 3332111 11 11332111 1223 2 24799999 999999998888775433 2655444
No 55
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=84.00 E-value=2.1 Score=45.66 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCCeEEeeeCc-eeecCCCchhHHHhhhcceEEec-C-CccceeeEecCcccccCCCCHHHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDP-GISTNETNDTFDRGMKADIYIKR-E-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEI 260 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P-~i~~~~~y~~~~e~~~~g~~v~~-~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 260 (395)
++++||+++|++|++|++=+-+ +..... ...|+.. ..+++.+. . |.. . .+.|...-++..||+++++..+.+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~-~~~f~~~-~~~~~~~~~~~g~~-~--~~~g~~~~~~~~~~~v~~~i~~~~ 304 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE-ESPFEKT-VPGYYYRYNEDGTL-S--NGTGVGNDTASEREMMRKFIVDSV 304 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCC-CCcccCC-CCCeeEEECCCCCc-c--CCCcccCCcccCCHHHHHHHHHHH
Confidence 6999999999999999985433 333211 1234322 23455432 2 321 1 011223356788999999999988
Q ss_pred HHHHhc
Q 048354 261 KLFRNT 266 (395)
Q Consensus 261 ~~~~~~ 266 (395)
+.+++.
T Consensus 305 ~~W~~e 310 (605)
T TIGR02104 305 LYWVKE 310 (605)
T ss_pred HHHHHH
Confidence 887754
No 56
>PLN03244 alpha-amylase; Provisional
Probab=83.64 E-value=2.9 Score=45.32 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCCc-hHHHHHHHHHhcCCeEEeeeCc-eeecCCCc--hhHHHhhhcceEEecC-CccceeeEecCcccccCCCCHHHH
Q 048354 179 NFPVD-PMKTFVDNLHKNGQKYVVIVDP-GISTNETN--DTFDRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIE 253 (395)
Q Consensus 179 ~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~i~~~~~y--~~~~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~ 253 (395)
+|-.| +++.||+++|++|++|++=+-+ +...+... ..| .+...-||-..+ |. ...| | +...|+.+|+++
T Consensus 436 RYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~f-DGt~~~Yf~~~~~g~---~~~W-G-s~~fnyg~~EVr 509 (872)
T PLN03244 436 RYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLF-DGSNDCYFHTGKRGH---HKHW-G-TRMFKYGDLDVL 509 (872)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhc-CCCccceeccCCCCc---cCCC-C-CceecCCCHHHH
Confidence 44444 6999999999999999995544 44433211 112 111112332211 11 1345 3 357899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 048354 254 TFWEGEIKLFRNTLASRPVFYF 275 (395)
Q Consensus 254 ~ww~~~~~~~~~~~~~~d~~~~ 275 (395)
++..+.++.+++... .|+.-|
T Consensus 510 ~FLLsna~yWleEyh-IDGFRf 530 (872)
T PLN03244 510 HFLISNLNWWITEYQ-IDGFQF 530 (872)
T ss_pred HHHHHHHHHHHHHhC-cCccee
Confidence 999999888775543 344433
No 57
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=83.33 E-value=1.2 Score=43.82 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=53.9
Q ss_pred ChHHHHHHHhhcccCC---CCceEEEEeccccCCccceE----eCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeec
Q 048354 139 NVSYLEGVVAGYANAS---IPLEVMWTDIDYMDAYKDFT----LDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIST 209 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~---iP~d~i~lD~~~~~~~~~f~----~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~ 209 (395)
++.-.+++++.+.+.| +-..-|.+|.=|.+..++++ -|+++||. +++++.+.+|.+|+|+.+..+-+-..
T Consensus 58 sE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva~~~rFP~-Gi~~ladyvHs~GLKlGiYsD~G~~T 134 (414)
T KOG2366|consen 58 SEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVADPSRFPS-GIKALADYVHSKGLKLGIYSDAGNFT 134 (414)
T ss_pred hHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCccccccChhhccc-chhhhhhchhhcCCceeeeeccCchh
Confidence 3556677788777775 44667899966766555444 58899998 79999999999999999988776544
No 58
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=82.61 E-value=5.6 Score=37.65 Aligned_cols=111 Identities=13% Similarity=0.268 Sum_probs=66.4
Q ss_pred cCCCCChHH-HHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCC
Q 048354 134 RYGYKNVSY-LEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNET 212 (395)
Q Consensus 134 r~~y~~~~~-v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~ 212 (395)
.|.|+.++. +.++. +-|.+.+++|+.|.+.. + ..++ .+=++.+++.|.++|..+.-+ ....
T Consensus 26 ~w~~ql~d~~~~~i~------~~~f~llVVDps~~g~~-----~-~~~~----~eelr~~~~gg~~pIAYlsIg--~ae~ 87 (300)
T COG2342 26 PWYYQLQDAYINEIL------NSPFDLLVVDPSYCGPF-----N-TPWT----IEELRTKADGGVKPIAYLSIG--EAES 87 (300)
T ss_pred chhhhcccchHHHHh------cCCCcEEEEeccccCCC-----C-CcCc----HHHHHHHhcCCeeEEEEEech--hhhh
Confidence 566665443 34443 34889999998876442 1 1222 666777888897777665332 2233
Q ss_pred chhHHHhhhcceEEecC---CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC
Q 048354 213 NDTFDRGMKADIYIKRE---GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 213 y~~~~e~~~~g~~v~~~---g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~ 268 (395)
|..| -.+.+..+.+ |+. ..-|||+ +.+-|=.|+=++-+.+.++++.+.|-
T Consensus 88 yR~Y---wd~~w~~~~p~wLg~e--dP~W~Gn-y~VkYW~~eWkdii~~~l~rL~d~Gf 140 (300)
T COG2342 88 YRFY---WDKYWLTGRPDWLGEE--DPEWPGN-YAVKYWEPEWKDIIRSYLDRLIDQGF 140 (300)
T ss_pred hhhH---hhhhhhcCCcccccCC--CCCCCCC-ceeeccCHHHHHHHHHHHHHHHHccC
Confidence 4444 2333433333 221 2348984 55667788877777788888888776
No 59
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=81.75 E-value=2.1 Score=41.78 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=52.2
Q ss_pred EEEec-cccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCC-ccceEeCCCCCCCchHHHHHHHHHhcCCeEEee
Q 048354 125 YFFAG-FHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDA-YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 125 y~~~G-~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 202 (395)
.++.| +|.+|. ..+..+++++++|+.|+-+=.+++-+.+.+. .+.|.|... -|+..+++..+++|++|++.
T Consensus 10 ~~~~Ge~hy~r~---p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~----~dl~~f~~~a~~~gl~vilr 82 (319)
T PF01301_consen 10 FILSGEFHYFRI---PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGN----RDLDRFLDLAQENGLYVILR 82 (319)
T ss_dssp -EEEEEE-GGGS----GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGG----G-HHHHHHHHHHTT-EEEEE
T ss_pred EEEEeeeccccC---ChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccch----hhHHHHHHHHHHcCcEEEec
Confidence 33444 577676 4888999999999999998888887777654 345555432 17899999999999999999
Q ss_pred eCceeecCC
Q 048354 203 VDPGISTNE 211 (395)
Q Consensus 203 i~P~i~~~~ 211 (395)
.-|+|..+.
T Consensus 83 pGpyi~aE~ 91 (319)
T PF01301_consen 83 PGPYICAEW 91 (319)
T ss_dssp EES---TTB
T ss_pred ccceecccc
Confidence 999998763
No 60
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=81.57 E-value=7.8 Score=36.92 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=43.8
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCC-CCCCCchHHHHHHHHHhcCCeEEeeeCcee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDP-INFPVDPMKTFVDNLHKNGQKYVVIVDPGI 207 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~-~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i 207 (395)
+.+..++.++--.++||+. +.+|.+|.....+-++|. +..|+.+++++++.-+++|+++.+|.+-.-
T Consensus 30 ~t~~~k~yIDfAa~~G~eY--vlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEY--VLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SE--EEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CHHHHHHHHHHHHHcCCCE--EEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 6778888898889999987 556988864221111221 245666899999999999999999985443
No 61
>PLN02960 alpha-amylase
Probab=81.13 E-value=4 Score=44.85 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=71.6
Q ss_pred ccccccCCCCChHHHH-HHHhhcccCCCCceEEEEeccccC------Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCC
Q 048354 129 GFHQCRYGYKNVSYLE-GVVAGYANASIPLEVMWTDIDYMD------AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQ 197 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~-~~~~~~r~~~iP~d~i~lD~~~~~------~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~ 197 (395)
|.+...-+..|-.++. +++.-+++.||- +|+|=+=..- +| ..|..++ +|-.| +++.||+.+|++|+
T Consensus 404 g~~~~e~~~gtf~~~~e~~LdYLk~LGvt--~IeLmPv~e~~~~~swGY~~~~yfa~~~-~yGtp~dfk~LVd~aH~~GI 480 (897)
T PLN02960 404 GISGSEPKISSFKEFTQKVLPHVKKAGYN--AIQLIGVQEHKDYSSVGYKVTNFFAVSS-RFGTPDDFKRLVDEAHGLGL 480 (897)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCC--EEEECCcccCCCCCCCCCCcccCCCccc-ccCCHHHHHHHHHHHHHCCC
Confidence 4433222333545554 568888888874 4666543210 11 1222222 34333 69999999999999
Q ss_pred eEEeeeCc-eeecCCC--chhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc
Q 048354 198 KYVVIVDP-GISTNET--NDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT 266 (395)
Q Consensus 198 k~~~~i~P-~i~~~~~--y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 266 (395)
+|++=+-| +...+.. ...|+ +...-|+-.. ..-....| | +..+|+.+|+++++..+.++.+++.
T Consensus 481 ~VILDvV~NH~~~d~~~~L~~FD-G~~~~Yf~~~--~~g~~~~W-G-~~~fNy~~~eVr~fLlsna~yWl~E 547 (897)
T PLN02960 481 LVFLDIVHSYAAADEMVGLSLFD-GSNDCYFHSG--KRGHHKRW-G-TRMFKYGDHEVLHFLLSNLNWWVTE 547 (897)
T ss_pred EEEEEecccccCCccccchhhcC-CCccceeecC--CCCccCCC-C-CcccCCCCHHHHHHHHHHHHHHHHH
Confidence 99995544 4444321 11221 1111123211 11112335 3 3568999999999999988887654
No 62
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.75 E-value=32 Score=33.16 Aligned_cols=118 Identities=11% Similarity=0.017 Sum_probs=73.2
Q ss_pred ccCCCCChHHHHHHHhhcccCCCCceEEEEecccc-CCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC
Q 048354 133 CRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM-DAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE 211 (395)
Q Consensus 133 sr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~ 211 (395)
+|..+.+.+.++++++.+...++-.=.+++...+- .+...+.-++..+...+++++++..+++|++|++-|+-.
T Consensus 9 ~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~p----- 83 (301)
T cd06565 9 KRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTL----- 83 (301)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCH-----
Confidence 56578899999999999999999876666653221 111122222445554478999999999999998865321
Q ss_pred CchhHHHh-hhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHh
Q 048354 212 TNDTFDRG-MKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 212 ~y~~~~e~-~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
-..++ .+..-+.. -..++.....+|-++|++.++-.+.++++.+
T Consensus 84 ---GH~~~~l~~~~~~~-------l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~ 128 (301)
T cd06565 84 ---GHLEFILKHPEFRH-------LREVDDPPQTLCPGEPKTYDFIEEMIRQVLE 128 (301)
T ss_pred ---HHHHHHHhCccccc-------ccccCCCCCccCCCChhHHHHHHHHHHHHHH
Confidence 11111 11000000 0011222457888999999998888887654
No 63
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=80.72 E-value=9 Score=40.72 Aligned_cols=122 Identities=12% Similarity=0.157 Sum_probs=67.9
Q ss_pred CChHHHHHHHhhcccCCCCc-eEEE-----Eecccc-CCccceEeCCCCCCCc-hHHHHHHHHHhcCCeEEe-eeCceee
Q 048354 138 KNVSYLEGVVAGYANASIPL-EVMW-----TDIDYM-DAYKDFTLDPINFPVD-PMKTFVDNLHKNGQKYVV-IVDPGIS 208 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~-d~i~-----lD~~~~-~~~~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~-~i~P~i~ 208 (395)
.+-+-+.+++.-+++.||-+ +-+= .|-.|- +.-+-|. -..+|-.| +++++|+.+|++||-|++ ||--+..
T Consensus 162 ~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yA-p~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~ 240 (628)
T COG0296 162 GYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYA-PTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFP 240 (628)
T ss_pred CHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecc-ccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCC
Confidence 34566888899999999752 2211 121221 0111222 23477666 699999999999999999 5555565
Q ss_pred cCCCc-hhHHHhhhcceEEecCCcccee--eEecCcccccCCC-CHHHHHHHHHHHHHHHhcCC
Q 048354 209 TNETN-DTFDRGMKADIYIKREGVPYKG--KVWAGDVYFPDFL-NPAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 209 ~~~~y-~~~~e~~~~g~~v~~~g~~~~~--~~w~g~~~~~Dft-np~a~~ww~~~~~~~~~~~~ 268 (395)
.+..| ..| .+.+...--.|..+ ..| ...+++. .+++|.+.-+.....++...
T Consensus 241 ~d~~~L~~f-----dg~~~~e~~~~~~~~~~~W---g~~i~~~gr~EVR~Fll~nal~Wl~~yH 296 (628)
T COG0296 241 PDGNYLARF-----DGTFLYEHEDPRRGEHTDW---GTAIFNYGRNEVRNFLLANALYWLEEYH 296 (628)
T ss_pred CCcchhhhc-----CCccccccCCcccccCCCc---ccchhccCcHHHHHHHHHHHHHHHHHhC
Confidence 55322 111 11111110011111 123 3345555 99999998888777665543
No 64
>PLN00196 alpha-amylase; Provisional
Probab=79.60 E-value=4.3 Score=41.32 Aligned_cols=63 Identities=21% Similarity=0.424 Sum_probs=45.4
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccC----Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMD----AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i 203 (395)
.-+.|.+-++.+++.|| ++|||-+-+.. +| ..|..|+.+|-.. ++++||+++|++|+|+++=+
T Consensus 42 ~~~~i~~kldyL~~LGv--taIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGI--THVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34567777888888776 67999875542 22 2355665567543 69999999999999999844
No 65
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=78.82 E-value=2.9 Score=46.37 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCeEEeee-CceeecCCC--chhHHHhhhcceEEecC--CccceeeEecCcccccCCCCHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIV-DPGISTNET--NDTFDRGMKADIYIKRE--GVPYKGKVWAGDVYFPDFLNPAIETFWEG 258 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i-~P~i~~~~~--y~~~~e~~~~g~~v~~~--g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 258 (395)
++++||+.||++|++||+=+ --|...... ...++. ...+||.+.. |......+ +.-.+..||.++++..+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~-~~P~YY~r~~~~G~~~n~~~----~~d~a~e~~~Vrk~iiD 479 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDK-IVPGYYHRLNEDGGVENSTC----CSNTATEHRMMAKLIVD 479 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCcccccc-cCcHhhEeeCCCCCeecCCC----CcCCCCCCHHHHHHHHH
Confidence 58999999999999999844 333333210 011221 1235555433 22111111 22346789999998888
Q ss_pred HHHHHHh
Q 048354 259 EIKLFRN 265 (395)
Q Consensus 259 ~~~~~~~ 265 (395)
.++.+..
T Consensus 480 sl~~W~~ 486 (898)
T TIGR02103 480 SLVVWAK 486 (898)
T ss_pred HHHHHHH
Confidence 8887654
No 66
>PRK14705 glycogen branching enzyme; Provisional
Probab=78.29 E-value=4.1 Score=46.69 Aligned_cols=123 Identities=13% Similarity=0.103 Sum_probs=67.1
Q ss_pred HHHHhhcccCCCCceEEEEecccc----C--Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-eeecCCC
Q 048354 144 EGVVAGYANASIPLEVMWTDIDYM----D--AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP-GISTNET 212 (395)
Q Consensus 144 ~~~~~~~r~~~iP~d~i~lD~~~~----~--~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~i~~~~~ 212 (395)
.++++-+++.|+ .+|+|=+=.. . +| ..|..+ .+|-.| +++.||+.+|++|++|++=+-| +...+.
T Consensus 769 ~~lldYlk~LGv--t~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~- 844 (1224)
T PRK14705 769 KELVDYVKWLGF--THVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS- 844 (1224)
T ss_pred HHHHHHHHHhCC--CEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-
Confidence 445667777765 4466644221 0 11 122223 355554 6999999999999999995545 343331
Q ss_pred chhHHHhhhcc-eEE-ecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 213 NDTFDRGMKAD-IYI-KREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 213 y~~~~e~~~~g-~~v-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
.+....... ++- .++ ..-....|.. ..+|+.+|+++++..+.+..+++... .|+.-+|
T Consensus 845 --~~l~~fdg~~~y~~~d~-~~g~~~~Wg~--~~fn~~~~eVr~fli~~a~~Wl~eyh-iDGfR~D 904 (1224)
T PRK14705 845 --WALAQFDGQPLYEHADP-ALGEHPDWGT--LIFDFGRTEVRNFLVANALYWLDEFH-IDGLRVD 904 (1224)
T ss_pred --hhhhhcCCCcccccCCc-ccCCCCCCCC--ceecCCCHHHHHHHHHHHHHHHHHhC-CCcEEEe
Confidence 110000000 111 111 0001123532 45899999999999999988877643 3554443
No 67
>PRK15447 putative protease; Provisional
Probab=77.36 E-value=3.3 Score=40.01 Aligned_cols=111 Identities=8% Similarity=0.032 Sum_probs=65.4
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCcee-ecCCCchhHH
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGI-STNETNDTFD 217 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i-~~~~~y~~~~ 217 (395)
....++.+...+.+.| +|+|++...-...... |...++++.++.+|+.|.|+.+.+ |.| ..+...+...
T Consensus 13 p~~~~~~~~~~~~~~g--aDaVY~g~~~~~~R~~-------f~~~~l~e~v~~~~~~gkkvyva~-p~i~~~~~e~~~l~ 82 (301)
T PRK15447 13 PKETVRDFYQRAADSP--VDIVYLGETVCSKRRE-------LKVGDWLELAERLAAAGKEVVLST-LALVEAPSELKELR 82 (301)
T ss_pred CCCCHHHHHHHHHcCC--CCEEEECCccCCCccC-------CCHHHHHHHHHHHHHcCCEEEEEe-cccccCHHHHHHHH
Confidence 3455677777777777 8999998544332222 333378999999999999988765 554 3333233444
Q ss_pred Hhhhcc---eEEecCCccceee--EecC-cccccCCCCHHHHHHHHHH
Q 048354 218 RGMKAD---IYIKREGVPYKGK--VWAG-DVYFPDFLNPAIETFWEGE 259 (395)
Q Consensus 218 e~~~~g---~~v~~~g~~~~~~--~w~g-~~~~~Dftnp~a~~ww~~~ 259 (395)
+..+.+ +.|.+.|.....+ ..|= -..-+.-+|..+.++|.+.
T Consensus 83 ~~l~~~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~ 130 (301)
T PRK15447 83 RLVENGEFLVEANDLGAVRLLAERGLPFVAGPALNCYNAATLALLARL 130 (301)
T ss_pred HHHhcCCCEEEEeCHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHc
Confidence 444443 3344443211111 0010 1244556899999999873
No 68
>PRK12568 glycogen branching enzyme; Provisional
Probab=77.14 E-value=3.8 Score=44.43 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHhhcccCCCCceEEEEeccccC------Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCce-eecCCC-
Q 048354 145 GVVAGYANASIPLEVMWTDIDYMD------AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDPG-ISTNET- 212 (395)
Q Consensus 145 ~~~~~~r~~~iP~d~i~lD~~~~~------~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P~-i~~~~~- 212 (395)
+++.-+++.|+ .+|+|=+=+.. +| ..|..++ +|..| +++.||+.+|++|++|++=+-|. ...+..
T Consensus 274 ~ll~ylk~LGv--t~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~ 350 (730)
T PRK12568 274 QLIPYVQQLGF--THIELLPITEHPFGGSWGYQPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHG 350 (730)
T ss_pred HHHHHHHHcCC--CEEEECccccCCCCCCCCCCCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccc
Confidence 44566777776 44666543211 11 2344443 56555 69999999999999999965553 333210
Q ss_pred chhHHHhhhcceEE-ecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 213 NDTFDRGMKADIYI-KREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 213 y~~~~e~~~~g~~v-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
...|+. ..++- .++ ..-....|. ...+|+.||+++++..+.++.+++... .|+.-+|
T Consensus 351 l~~fdg---~~~Ye~~d~-~~g~~~~W~--~~~~N~~~peVr~~li~~a~~Wl~eyh-IDG~R~D 408 (730)
T PRK12568 351 LAQFDG---AALYEHADP-REGMHRDWN--TLIYNYGRPEVTAYLLGSALEWIEHYH-LDGLRVD 408 (730)
T ss_pred cccCCC---ccccccCCC-cCCccCCCC--CeecccCCHHHHHHHHHHHHHHHHHhC-ceEEEEc
Confidence 011110 00110 011 000012342 235799999999999998888776533 2554443
No 69
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=76.76 E-value=4.8 Score=45.74 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCeEEeeeCc-eeecCCCchhHHHhhhcceEEecC--CccceeeEecCcccccCCCCHHHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDP-GISTNETNDTFDRGMKADIYIKRE--GVPYKGKVWAGDVYFPDFLNPAIETFWEGEI 260 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P-~i~~~~~y~~~~e~~~~g~~v~~~--g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 260 (395)
++++||+.||++|++||+=+-+ |.... ..|+.. ..+||...+ |.+.. .|. +.-++..||.+|++..+.+
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~---~~f~~~-~p~Yy~~~~~~G~~~~--~~~--g~~l~~e~~~vrk~iiDsl 627 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKV---YIFEDL-EPNYYHFMDADGTPRT--SFG--GGRLGTTHEMSRRILVDSI 627 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEeccccccccc---cccccc-CCCceEeeCCCCCccc--ccC--CCCCCcCCHHHHHHHHHHH
Confidence 5999999999999999985533 33322 234332 234554322 44322 222 2457889999999999988
Q ss_pred HHHHhcCCCCCCCCC
Q 048354 261 KLFRNTLASRPVFYF 275 (395)
Q Consensus 261 ~~~~~~~~~~d~~~~ 275 (395)
+.+.+... .|++-|
T Consensus 628 ~yWv~ey~-VDGFRf 641 (1111)
T TIGR02102 628 KYLVDEFK-VDGFRF 641 (1111)
T ss_pred HHHHHhcC-CcEEEE
Confidence 88776533 254433
No 70
>PRK05402 glycogen branching enzyme; Provisional
Probab=76.07 E-value=5.3 Score=43.56 Aligned_cols=129 Identities=10% Similarity=0.062 Sum_probs=69.2
Q ss_pred ChHHHHHH-HhhcccCCCCceEEEEeccccC------Cc---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-e
Q 048354 139 NVSYLEGV-VAGYANASIPLEVMWTDIDYMD------AY---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP-G 206 (395)
Q Consensus 139 ~~~~v~~~-~~~~r~~~iP~d~i~lD~~~~~------~~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~ 206 (395)
+-+.+.+- ++-+++.|+ ++|+|-+=+.. +| ..|..++ +|-.+ ++++||+++|++|++|++=+-| +
T Consensus 263 ~~~~i~~~l~~ylk~LGv--~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 263 SYRELADQLIPYVKEMGF--THVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 44444444 477788776 55877654321 11 1233343 34443 6999999999999999996544 3
Q ss_pred eecCCCchhHHHhhhcc-eEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 207 ISTNETNDTFDRGMKAD-IYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g-~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
...+. ..+....... |.-+.+.... ...|. ...+|+.||++++...+.++.+++... .|+.-+|
T Consensus 340 ~~~~~--~~~~~~~~~~~y~~~~~~~~~-~~~w~--~~~~n~~~~~v~~~l~~~~~~W~~e~~-iDG~R~D 404 (726)
T PRK05402 340 FPKDA--HGLARFDGTALYEHADPREGE-HPDWG--TLIFNYGRNEVRNFLVANALYWLEEFH-IDGLRVD 404 (726)
T ss_pred CCCCc--cchhccCCCcceeccCCcCCc-cCCCC--CccccCCCHHHHHHHHHHHHHHHHHhC-CcEEEEC
Confidence 33321 1010000000 1111110000 11232 235799999999999998888776532 2554444
No 71
>PLN02361 alpha-amylase
Probab=74.50 E-value=14 Score=37.25 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccCCCCceEEEEeccccC----Ccc---ceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYMD----AYK---DFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP 205 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P 205 (395)
+.+.+-++.+++.|| ++||+-+-... +|. -+..|+ +|-.. ++++||+.+|++|+|+++=+-+
T Consensus 29 ~~i~~kl~~l~~lG~--t~iwl~P~~~~~~~~GY~~~d~y~~~~-~~Gt~~el~~li~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 29 RNLEGKVPDLAKSGF--TSAWLPPPSQSLAPEGYLPQNLYSLNS-AYGSEHLLKSLLRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHHHHHHHcCC--CEEEeCCCCcCCCCCCCCcccccccCc-ccCCHHHHHHHHHHHHHcCCEEEEEEcc
Confidence 456666777777776 77999875542 111 233443 45432 6899999999999999885433
No 72
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=73.68 E-value=6.3 Score=42.93 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=68.5
Q ss_pred ChHH-HHHHHhhcccCCCCceEEEEeccccC----C--c---cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCc-e
Q 048354 139 NVSY-LEGVVAGYANASIPLEVMWTDIDYMD----A--Y---KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDP-G 206 (395)
Q Consensus 139 ~~~~-v~~~~~~~r~~~iP~d~i~lD~~~~~----~--~---~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~ 206 (395)
+-.+ ..+++..+++.|+ ++|+|=+-+.- . | .-|..+ .+|..| ++++||+.+|++|++|++=+-| +
T Consensus 248 ty~~~~~~~L~ylk~LG~--t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH 324 (758)
T PLN02447 248 SYREFADDVLPRIKALGY--NAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSH 324 (758)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 4344 3566788888876 45766542221 1 1 123333 356554 6999999999999999995544 3
Q ss_pred eecCC--CchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc
Q 048354 207 ISTNE--TNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT 266 (395)
Q Consensus 207 i~~~~--~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 266 (395)
+..+. +...|+ +....||-... ..+ ...| + ...+|+.+++++++..+.++.+++.
T Consensus 325 ~~~~~~~gl~~fD-g~~~~Yf~~~~-~g~-~~~w-~-~~~~N~~~~eVr~fLl~~~~~Wl~e 381 (758)
T PLN02447 325 ASKNTLDGLNGFD-GTDGSYFHSGP-RGY-HWLW-D-SRLFNYGNWEVLRFLLSNLRWWLEE 381 (758)
T ss_pred ccccccccccccC-CCCccccccCC-CCC-cCcC-C-CceecCCCHHHHHHHHHHHHHHHHH
Confidence 43321 111221 11122332221 000 1224 2 3468999999999999988887765
No 73
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=72.43 E-value=13 Score=35.95 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=106.6
Q ss_pred ccCCCCChHHHHHHHhhcccCCCCceEEEEecc--cc---CCccceE---------eCCCCCCCchHHHHHHHHHhcCCe
Q 048354 133 CRYGYKNVSYLEGVVAGYANASIPLEVMWTDID--YM---DAYKDFT---------LDPINFPVDPMKTFVDNLHKNGQK 198 (395)
Q Consensus 133 sr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~~~f~---------~d~~~FPdp~~~~mi~~L~~~G~k 198 (395)
+| .|.+.+.++++++.+...++-.=.+++..+ |- ..+...+ -....|...+++++++.-+++|++
T Consensus 9 aR-~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~ 87 (303)
T cd02742 9 SR-HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIE 87 (303)
T ss_pred cc-cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCE
Confidence 45 778999999999999999998877777632 21 0111110 011123333789999999999999
Q ss_pred EEeeeC-ceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 048354 199 YVVIVD-PGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFDD 277 (395)
Q Consensus 199 ~~~~i~-P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~~ 277 (395)
+|+-|+ |+-... --..|.+. .... +.+..|......+|.++|++.++..+.++++.+.-. ....-++
T Consensus 88 viPEiD~PGH~~a-~~~~~p~l-----~~~~----~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~-~~~iHiG- 155 (303)
T cd02742 88 VIPEIDMPGHSTA-FVKSFPKL-----LTEC----YAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP-DRYLHIG- 155 (303)
T ss_pred EEEeccchHHHHH-HHHhCHHh-----ccCc----cccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC-CCeEEec-
Confidence 987663 221110 00011111 1000 011122233467899999999999998888765322 0000011
Q ss_pred CCccccCCCCcccccCCCccccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccC--CCccc--eeecCCCCCCchHHH
Q 048354 278 PPYKISNGGGGKQINDRTFPASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVS--SGKYA--AHLTGDNAARWDDLA 353 (395)
Q Consensus 278 ~~~~~~~~~~~~~~~~~t~~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~G--sqry~--~~W~GD~~s~W~~L~ 353 (395)
++ ..... ...+.+|..+..+. .+-+++. +++++++.-..... ..+-. ..|.++.....+.++
T Consensus 156 --------gD-E~~~~---~~~~~l~~~f~~~~-~~~v~~~-g~~~~~W~d~~~~~~~l~~~~ii~~W~~~~~~~~~~~~ 221 (303)
T cd02742 156 --------GD-EAHFK---QDRKHLMSQFIQRV-LDIVKKK-GKKVIVWQDGFDKKMKLKEDVIVQYWDYDGDKYNVELP 221 (303)
T ss_pred --------ce-ecCCC---CCHHHHHHHHHHHH-HHHHHHc-CCeEEEecccccCCCCCCCCeEEEEccCCCCcchHHHH
Confidence 10 11110 11344554444433 3334443 67787776544433 22333 588877544445555
Q ss_pred HHHHHHHhc
Q 048354 354 YSILAILKV 362 (395)
Q Consensus 354 ~~I~~~l~~ 362 (395)
..+..+...
T Consensus 222 ~~~~~G~~v 230 (303)
T cd02742 222 EAAAKGFPV 230 (303)
T ss_pred HHHHCCCCE
Confidence 544444443
No 74
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=71.46 E-value=6.5 Score=42.46 Aligned_cols=71 Identities=23% Similarity=0.430 Sum_probs=52.8
Q ss_pred ccccccCCC----CChHHHHHHHhhcccCCCCceEEEEeccccCC----c-------------cceE-----eC------
Q 048354 129 GFHQCRYGY----KNVSYLEGVVAGYANASIPLEVMWTDIDYMDA----Y-------------KDFT-----LD------ 176 (395)
Q Consensus 129 G~~qsr~~y----~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~----~-------------~~f~-----~d------ 176 (395)
++--|.|.- -+++.|++.++.+++.|||..-+.||.+|++- . ..|. +.
T Consensus 196 ~lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~kF~ 275 (747)
T PF05691_consen 196 GLGWCTWDAFYQDVTEEGILEGLKSLEEGGIPPRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSKFR 275 (747)
T ss_pred hhccccHHHhccccCHHHHHHHHHHHHhCCCCceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhhhh
Confidence 666677752 27888999999999999999999999999841 1 0110 11
Q ss_pred -------CCCCCCchHHHHHHHHHhc--CCeEE
Q 048354 177 -------PINFPVDPMKTFVDNLHKN--GQKYV 200 (395)
Q Consensus 177 -------~~~FPdp~~~~mi~~L~~~--G~k~~ 200 (395)
++.||. +++.+++.+|++ |+|.|
T Consensus 276 ~~~~~~~~~~~~~-GL~~~V~~ik~~~~~Ik~V 307 (747)
T PF05691_consen 276 AYKSGKSPEAFPS-GLKHFVSDIKEKFPGIKYV 307 (747)
T ss_pred hccCCCcccCCcc-cHHHHHHHHHhhCCCCCEE
Confidence 124676 799999999997 78865
No 75
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=70.96 E-value=9.9 Score=39.99 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=65.8
Q ss_pred CCCceEEEEeccccCCc-------cceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeCceeecCCCchhH-----HHhh
Q 048354 154 SIPLEVMWTDIDYMDAY-------KDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVDPGISTNETNDTF-----DRGM 220 (395)
Q Consensus 154 ~iP~d~i~lD~~~~~~~-------~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~-----~e~~ 220 (395)
++.++++|+-+.+..-. .++..=..+|..- +++++++++|+.|+++|+-+-|.-..++ .+-| .+..
T Consensus 51 ~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~-~~wf~~~~~~~~~ 129 (545)
T KOG0471|consen 51 ELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDE-VEWFKASPTSKTG 129 (545)
T ss_pred hcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCcc-ccccccCcccccc
Confidence 46778899987665432 2444333466532 6899999999999999987766655321 0111 1111
Q ss_pred hcceEEecCCc---------------cceeeEec----------C----cccccCCCCHHHHHHHHHHHHH-HHhcCC
Q 048354 221 KADIYIKREGV---------------PYKGKVWA----------G----DVYFPDFLNPAIETFWEGEIKL-FRNTLA 268 (395)
Q Consensus 221 ~~g~~v~~~g~---------------~~~~~~w~----------g----~~~~~Dftnp~a~~ww~~~~~~-~~~~~~ 268 (395)
-.+++.-.+|. .+.+..|+ + ...-+|+.||++++-+.+.++. .++.+.
T Consensus 130 y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~~gv 207 (545)
T KOG0471|consen 130 YEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLEKGV 207 (545)
T ss_pred ceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 12233332211 11223333 1 2344679999999999999984 444444
No 76
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=69.75 E-value=5.1 Score=39.10 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=39.6
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEee
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 202 (395)
.+.+.++++.++++|+|+|+|-+...+..... +. .+.++++++.+.|+.+.+.
T Consensus 187 ~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~---------~~-~i~~~l~~~~~~Gl~i~IT 239 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP---------PE-QIWNALDRFASLGLPIHIT 239 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS---------HH-HHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCccceechhhccCCCCC---------HH-HHHHHHHHHHHcCCceEEE
Confidence 56799999999999999999988643332211 32 6899999999999887554
No 77
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=68.84 E-value=9.1 Score=40.99 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCeEEe-eeCceeecCC--CchhHHHhhhcce-EEecCCccceeeEecCcccccCCCCHHHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVV-IVDPGISTNE--TNDTFDRGMKADI-YIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGE 259 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~-~i~P~i~~~~--~y~~~~e~~~~g~-~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 259 (395)
++++||+++|..|+.|++ +|.-+.+.++ ++..| ++..+++ |-+.+ .+..|-+.+...+..+|++.++.-+.
T Consensus 312 efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~f-dGid~~~Yf~~~~----r~~h~~~~~r~fn~~~~~V~rflL~n 386 (757)
T KOG0470|consen 312 EFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMF-DGIDNSVYFHSGP----RGYHNSWCSRLFNYNHPVVLRFLLSN 386 (757)
T ss_pred HHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhc-cCcCCceEEEeCC----cccccccccccccCCCHHHHHHHHHH
Confidence 589999999999999987 4555555543 22344 3555444 43333 22223335578899999998766666
Q ss_pred HHHHHh
Q 048354 260 IKLFRN 265 (395)
Q Consensus 260 ~~~~~~ 265 (395)
++..+.
T Consensus 387 Lr~WVt 392 (757)
T KOG0470|consen 387 LRWWVT 392 (757)
T ss_pred HHHHHH
Confidence 665443
No 78
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=67.60 E-value=11 Score=37.59 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=59.1
Q ss_pred ChHHHHHHHhhcccCCCCceEE-EEeccccCC-ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhH
Q 048354 139 NVSYLEGVVAGYANASIPLEVM-WTDIDYMDA-YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTF 216 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i-~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~ 216 (395)
+.+++++.++.+++.||-+=.| .+.+.+++. .+.|.|. .+..+++.++++|+||++.+... ..|.+
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~-------~lD~~l~~a~~~Gi~viL~~~~~-----~~P~W 75 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS-------WLDRVLDLAAKHGIKVILGTPTA-----APPAW 75 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H-------HHHHHHHHHHCTT-EEEEEECTT-----TS-HH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH-------HHHHHHHHHHhccCeEEEEeccc-----ccccc
Confidence 4578999999999999976554 334443332 3344333 57999999999999999866321 11333
Q ss_pred HHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHH
Q 048354 217 DRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFR 264 (395)
Q Consensus 217 ~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 264 (395)
-.-+--+....+. |... -.|.....++.+|..++...+.++++.
T Consensus 76 l~~~~Pe~~~~~~~g~~~----~~g~~~~~~~~~p~yr~~~~~~~~~l~ 120 (374)
T PF02449_consen 76 LYDKYPEILPVDADGRRR----GFGSRQHYCPNSPAYREYARRFIRALA 120 (374)
T ss_dssp HHCCSGCCC-B-TTTSBE----ECCCSTT-HCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCCCCCcC----ccCCccccchhHHHHHHHHHHHHHHHH
Confidence 1111112222222 3321 123344567788888877777666554
No 79
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=66.30 E-value=15 Score=38.01 Aligned_cols=61 Identities=26% Similarity=0.417 Sum_probs=40.2
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccC-------Ccc--ce----------EeCCCCCCC-chHHHHHHHHHhcCCeE
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMD-------AYK--DF----------TLDPINFPV-DPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-------~~~--~f----------~~d~~~FPd-p~~~~mi~~L~~~G~k~ 199 (395)
-..|.+-++-+++.|+ ++|||-+-+.. +|. +| +.|+ +|-. .++++||+++|++|+||
T Consensus 21 ~~~I~~kldyl~~LGv--taIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~-~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 21 WNRLAERAPELAEAGI--TAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRT-KYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred HHHHHHHHHHHHHcCC--CEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCc-CcCCHHHHHHHHHHHHHCCCEE
Confidence 4556777777777665 77999875542 121 22 1222 3432 26999999999999999
Q ss_pred Eeee
Q 048354 200 VVIV 203 (395)
Q Consensus 200 ~~~i 203 (395)
++=+
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9843
No 80
>PLN02784 alpha-amylase
Probab=65.91 E-value=24 Score=38.91 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=41.8
Q ss_pred HHHHHHHhhcccCCCCceEEEEeccccC----Ccc---ceEeCCCCCCCc-hHHHHHHHHHhcCCeEEeeeC
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYMD----AYK---DFTLDPINFPVD-PMKTFVDNLHKNGQKYVVIVD 204 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~ 204 (395)
..+.+-++.+++.|| ++|||-+-+.. +|. -|..|+ +|-.. +++.||+.+|++|+++++=+-
T Consensus 521 ~~I~ekldyL~~LG~--taIWLpP~~~s~s~~GY~p~D~y~lds-~yGT~~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 521 MELGEKAAELSSLGF--TVVWLPPPTESVSPEGYMPKDLYNLNS-RYGTIDELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHHHHHHHhCC--CEEEeCCCCCCCCCCCcCcccccccCc-CcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456677777777776 67999875432 221 244453 55532 699999999999999988543
No 81
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=65.64 E-value=22 Score=35.08 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=59.7
Q ss_pred ceEEEEeccccCCccceEeCC--CCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCc---hhHHHhhhcceE---Eec
Q 048354 157 LEVMWTDIDYMDAYKDFTLDP--INFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETN---DTFDRGMKADIY---IKR 228 (395)
Q Consensus 157 ~d~i~lD~~~~~~~~~f~~d~--~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y---~~~~e~~~~g~~---v~~ 228 (395)
.|+|++--. .|.--. ..|++.++++.++.+|+.|.|+.+.++..+..+.-. ...+.+.+.|.. +.+
T Consensus 27 ADaVY~G~~------~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 27 ADAVYIGEK------EFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred CCEEEeCCc------ccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 888888522 233222 347877899999999999999999998888776421 233455555542 233
Q ss_pred CCccc-eeeEecC----cccccCCCCHHHHHHHHHH
Q 048354 229 EGVPY-KGKVWAG----DVYFPDFLNPAIETFWEGE 259 (395)
Q Consensus 229 ~g~~~-~~~~w~g----~~~~~Dftnp~a~~ww~~~ 259 (395)
+|-.. .....|. -+....-+|+++.++|.++
T Consensus 101 pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~ 136 (347)
T COG0826 101 PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKEL 136 (347)
T ss_pred HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHc
Confidence 32100 0011111 1344567899999999984
No 82
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.59 E-value=72 Score=30.98 Aligned_cols=122 Identities=14% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCChHHHHHHHhhcccCCCCceEEEEec--ccc---CCccceEe---CCCCCCCchHHHHHHHHHhcCCeEEeeeC-ce
Q 048354 136 GYKNVSYLEGVVAGYANASIPLEVMWTDI--DYM---DAYKDFTL---DPINFPVDPMKTFVDNLHKNGQKYVVIVD-PG 206 (395)
Q Consensus 136 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~--~~~---~~~~~f~~---d~~~FPdp~~~~mi~~L~~~G~k~~~~i~-P~ 206 (395)
.|.+.+.|+++++.+-..++-.=.+++-. .|- ..+..++- ....+...+++++++.-+++|++|++-|+ |+
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PG 92 (311)
T cd06570 13 HFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPG 92 (311)
T ss_pred CCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCcc
Confidence 35579999999999999999877777632 221 11111110 01123333789999999999999988663 33
Q ss_pred eecCCCchhHHHhhhcceEEecCCccce-eeEecCcccccCCCCHHHHHHHHHHHHHHHh
Q 048354 207 ISTNETNDTFDRGMKADIYIKREGVPYK-GKVWAGDVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 207 i~~~~~y~~~~e~~~~g~~v~~~g~~~~-~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
-... -...|.+.... . .++. ...|.-....+|.+||++.++..+.++++.+
T Consensus 93 H~~a-~~~~ypel~~~------~-~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 93 HASA-IAVAYPELASG------P-GPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred chHH-HHHhCHHhccC------C-CccccccccccCCCccCCCChhHHHHHHHHHHHHHH
Confidence 2211 00112121111 1 1110 1122222346899999999999998887654
No 83
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=63.49 E-value=33 Score=34.44 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=49.1
Q ss_pred HHHHHHHhhcccCCCCceEEEEecccc--CC--ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce----------
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYM--DA--YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG---------- 206 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~--~~--~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~---------- 206 (395)
+.++.-++.+++.| +|+|-+|.-|- ++ -+.|.|. ..+++++-+++.|+|+.+++-=+
T Consensus 16 ~~~~~~L~~LK~~G--V~GVmvdvWWGiVE~~~p~~ydWs-------~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~ 86 (402)
T PF01373_consen 16 NALEAQLRALKSAG--VDGVMVDVWWGIVEGEGPQQYDWS-------GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDC 86 (402)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEEEEHHHHTGSSTTB---H-------HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSS
T ss_pred HHHHHHHHHHHHcC--CcEEEEEeEeeeeccCCCCccCcH-------HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCcc
Confidence 36677777777766 79999997663 22 3445554 68999999999999998876222
Q ss_pred -eecCCCchhHHHhhhcceEEecC
Q 048354 207 -ISTNETNDTFDRGMKADIYIKRE 229 (395)
Q Consensus 207 -i~~~~~y~~~~e~~~~g~~v~~~ 229 (395)
|.... =..+.+.+++++.++.
T Consensus 87 ~IpLP~--Wv~~~~~~~di~ytd~ 108 (402)
T PF01373_consen 87 NIPLPS--WVWEIGKKDDIFYTDR 108 (402)
T ss_dssp EB-S-H--HHHHHHHHSGGEEE-T
T ss_pred CCcCCH--HHHhccccCCcEEECC
Confidence 22211 1345667779988876
No 84
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=62.44 E-value=9.4 Score=34.21 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=46.2
Q ss_pred cccccCC--CCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 130 FHQCRYG--YKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 130 ~~qsr~~--y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
||-++-. ..-.+|+..+++.++..++..+.+++|+....+ .++-+.+.--+ -++++++.+++.|.++++...+.
T Consensus 58 Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE~~~~--~~~~~~~~~~~-~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 58 YFFPCINCCGSAAGQVQTFLQYLKANGIKYGTVWIDIEQNPC--QWSSDVASNCQ-FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhCCCceeEEEEEEecCCC--CCcCCHHHHHH-HHHHHHHHHHHhCCeEEEEcCcc
Confidence 4444333 334677888888888777777788899776421 11111111001 35788888898999998877654
No 85
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.50 E-value=25 Score=25.34 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=38.6
Q ss_pred HHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEE
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYV 200 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~ 200 (395)
..+.++.+-+.++++-+..+.....-..+.....+.-+. +++ .++.+.|+++|+++.
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~--~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNP--RPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCH--HHHHHHHHHCCCeee
Confidence 467788889999999999887653222333333333222 444 789999999999863
No 86
>PLN02877 alpha-amylase/limit dextrinase
Probab=60.00 E-value=21 Score=39.98 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCeEEeee-CceeecCC--C-chhHHHhhhcceEEecC--CccceeeEecCcccccCCCCHHHHHHHH
Q 048354 184 PMKTFVDNLHKNGQKYVVIV-DPGISTNE--T-NDTFDRGMKADIYIKRE--GVPYKGKVWAGDVYFPDFLNPAIETFWE 257 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i-~P~i~~~~--~-y~~~~e~~~~g~~v~~~--g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 257 (395)
++++||+.||++|++|++-+ --+..... . ...++. ...+||.+.+ |..-...| +.-..-.++.++++..
T Consensus 467 efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~-~vP~YY~r~~~~G~~~ns~c----~n~~Ase~~mvrklIl 541 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDK-IVPGYYLRRNSDGFIENSTC----VNNTASEHYMVDRLIV 541 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccC-CCCCceEEECCCCCcccCCc----cCCCccCCHHHHHHHH
Confidence 48999999999999999854 33332211 0 012222 2236666543 32111111 2223456788888888
Q ss_pred HHHHHHHhcCCCCCCC
Q 048354 258 GEIKLFRNTLASRPVF 273 (395)
Q Consensus 258 ~~~~~~~~~~~~~d~~ 273 (395)
+-++.+..... .|++
T Consensus 542 Dsl~yW~~ey~-VDGF 556 (970)
T PLN02877 542 DDLLNWAVNYK-VDGF 556 (970)
T ss_pred HHHHHHHHHhC-CCEE
Confidence 88887665433 2444
No 87
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=59.99 E-value=13 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCeEEeeeCcee
Q 048354 186 KTFVDNLHKNGQKYVVIVDPGI 207 (395)
Q Consensus 186 ~~mi~~L~~~G~k~~~~i~P~i 207 (395)
++.|+.||++|.+++..+.-+-
T Consensus 39 ~~~I~~L~~~G~~vicY~s~Gs 60 (74)
T PF03537_consen 39 KEEIARLKAQGKKVICYFSIGS 60 (74)
T ss_dssp HHHHHHHHHTT-EEEEEEESSE
T ss_pred HHHHHHHHHCCCEEEEEEeCce
Confidence 8899999999999888775543
No 88
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=59.15 E-value=20 Score=34.98 Aligned_cols=130 Identities=13% Similarity=0.173 Sum_probs=69.2
Q ss_pred ccCCCCChHHHHHHHhhcccCCCCceEEEEecc--cc---CCcc----ceEeCCC----CCCCchHHHHHHHHHhcCCeE
Q 048354 133 CRYGYKNVSYLEGVVAGYANASIPLEVMWTDID--YM---DAYK----DFTLDPI----NFPVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 133 sr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~~----~f~~d~~----~FPdp~~~~mi~~L~~~G~k~ 199 (395)
+| .|.+.+.++++++.+-..++-.=.+++..+ |- ..+. ...+... .+..-+++++++..+++|++|
T Consensus 11 aR-~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~V 89 (351)
T PF00728_consen 11 AR-HFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEV 89 (351)
T ss_dssp SS-S-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EE
T ss_pred CC-CCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCce
Confidence 45 777999999999999999998766776543 11 1110 0001111 233337899999999999999
Q ss_pred EeeeC-ceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc
Q 048354 200 VVIVD-PGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT 266 (395)
Q Consensus 200 ~~~i~-P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 266 (395)
|+-|+ |+-... --..+.+..... ...+........+......+|.++|++.++..+.++++.+.
T Consensus 90 IPeid~PGH~~~-~l~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~ 154 (351)
T PF00728_consen 90 IPEIDTPGHAEA-WLKAYPELGCSA--WPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL 154 (351)
T ss_dssp EEEEEESSS-HH-HHHHHHHHCCCH--TTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred eeeccCchHHHH-HHHhCchhhccc--cccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh
Confidence 87553 322110 001111111110 00000011112222234678999999999999999887643
No 89
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=58.26 E-value=41 Score=32.82 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=70.3
Q ss_pred CCChHHHHHHHhhcccCCCCceEEEEeccccCCccce-----------------------EeCCCCCCCchHHHHHHHHH
Q 048354 137 YKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDF-----------------------TLDPINFPVDPMKTFVDNLH 193 (395)
Q Consensus 137 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f-----------------------~~d~~~FPdp~~~~mi~~L~ 193 (395)
|.+.+.|+++++.+...++-.=.+++...|--....+ .-....|...+++++++.-+
T Consensus 13 ~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 92 (326)
T cd06564 13 YYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAK 92 (326)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHH
Confidence 4489999999999999999876776664432110000 00123344447899999999
Q ss_pred hcCCeEEeeeC-ceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHh
Q 048354 194 KNGQKYVVIVD-PGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 194 ~~G~k~~~~i~-P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
++|+++|+-|+ |+-... --..|.+... .. + ..| .....+|.++|++.++..+.++++.+
T Consensus 93 ~rgI~vIPEID~PGH~~a-~~~~~pel~~-----~~---~---~~~-~~~~~l~~~~~~t~~f~~~l~~E~~~ 152 (326)
T cd06564 93 DRGVNIIPEIDSPGHSLA-FTKAMPELGL-----KN---P---FSK-YDKDTLDISNPEAVKFVKALFDEYLD 152 (326)
T ss_pred HcCCeEeccCCCcHHHHH-HHHhhHHhcC-----CC---c---ccC-CCcccccCCCHHHHHHHHHHHHHHHH
Confidence 99999987553 222110 0011111111 00 0 111 23567899999999999988887764
No 90
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=58.19 E-value=37 Score=37.75 Aligned_cols=66 Identities=12% Similarity=0.276 Sum_probs=45.7
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCC------cc--ce-EeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCcee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDA------YK--DF-TLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDPGI 207 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~------~~--~f-~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~i 207 (395)
+-+.+.+.+.-+++.|| ++||+-+-+... |. +| ..|+ .|.. .+++.|++.+|++|+++++=+-|.-
T Consensus 18 tf~~~~~~l~YL~~LGi--s~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 18 TFDDAAELVPYFADLGV--SHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CHHHHHHHhHHHHHcCC--CEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 56678888888888776 779998765431 11 22 2333 2332 2699999999999999999665553
No 91
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=57.59 E-value=16 Score=34.18 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=39.1
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCc-hHHHHHHHHHhcCCeEEee
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVD-PMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~ 202 (395)
.+.++++++.+++.|+|+|+|-+...... ..|++ .+++.+++|.+.|..+.+.
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~----------~~~~~~~~~~~l~~~~~~g~pi~iT 188 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSL----------GSPNIAEIRAALDRFASLGLEIQIT 188 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecC----------CCCCHHHHHHHHHHHHHcCCceEEE
Confidence 45789999999999999999988532211 12332 5788888888888887654
No 92
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=57.27 E-value=16 Score=33.53 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=43.7
Q ss_pred HhhcccC-CCCceE--EEEecccc-C-----CccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 147 VAGYANA-SIPLEV--MWTDIDYM-D-----AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 147 ~~~~r~~-~iP~d~--i~lD~~~~-~-----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
++.+|+. .+|+|+ ++.+++.. + +-...++..+.-+++ .+.++.+|+.|.|..+.++|.-..+
T Consensus 53 v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~--~r~i~~Ik~~G~kaGv~lnP~Tp~~ 123 (220)
T COG0036 53 VKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHI--HRTIQLIKELGVKAGLVLNPATPLE 123 (220)
T ss_pred HHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCH--HHHHHHHHHcCCeEEEEECCCCCHH
Confidence 4444444 578877 55554332 1 123556777777765 9999999999999999999998765
No 93
>PRK15063 isocitrate lyase; Provisional
Probab=55.51 E-value=25 Score=35.59 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=42.1
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
+.++++++++.++ ..+|.-.+.. +.-..|+|... |.|..++.++++|.++|++++++--+.+.
T Consensus 289 d~ee~~~fa~~v~-~~~P~~~lay-----n~sPsfnW~~~-~~~~~~~~f~~eL~~~Gy~~~~~~la~~h 351 (428)
T PRK15063 289 DLEEARRFAEAIH-AKFPGKLLAY-----NCSPSFNWKKN-LDDATIAKFQRELGAMGYKFQFITLAGFH 351 (428)
T ss_pred CHHHHHHHHHhhc-ccCccceeec-----CCCCCcccccc-cCHHHHHHHHHHHHHcCceEEEechHHHH
Confidence 5566666665553 2234322211 22348889886 88878999999999999999988666654
No 94
>PRK13840 sucrose phosphorylase; Provisional
Probab=52.40 E-value=1.4e+02 Score=31.10 Aligned_cols=120 Identities=13% Similarity=0.236 Sum_probs=68.6
Q ss_pred ChHHHHHHHhh-cccCCCCceEEEEeccccC--C----cc--ce-EeCCCCCCCchHHHHHHHHHhcCCeEEeee-Ccee
Q 048354 139 NVSYLEGVVAG-YANASIPLEVMWTDIDYMD--A----YK--DF-TLDPINFPVDPMKTFVDNLHKNGQKYVVIV-DPGI 207 (395)
Q Consensus 139 ~~~~v~~~~~~-~r~~~iP~d~i~lD~~~~~--~----~~--~f-~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i-~P~i 207 (395)
+-..+.+.++. ++. + +++||+=+.+.. . |- || ..|+ +|-+ ++++ ++|- +|+|+|+=+ --|+
T Consensus 18 dL~gl~~kLd~yL~~--l-v~~vhllPff~psp~sD~GYdv~DY~~VDP-~fGt--~eDf-~~L~-~giklmlDlV~NHt 89 (495)
T PRK13840 18 GLKSLTALLDGRLDG--L-FGGVHILPFFYPIDGADAGFDPIDHTKVDP-RLGD--WDDV-KALG-KTHDIMADLIVNHM 89 (495)
T ss_pred CHhHHHHHHHHHHHH--H-hCeEEECCCccCCCCCCCCCCCcChhhcCc-ccCC--HHHH-HHHH-hCCeEEEEECCCcC
Confidence 56666777764 443 5 899999987731 1 11 22 2454 4542 3443 2332 289998743 3444
Q ss_pred ecCCCchhHHHhhh-------cceEEecC--------------------Cccce---------eeEecC---cccccCCC
Q 048354 208 STNETNDTFDRGMK-------ADIYIKRE--------------------GVPYK---------GKVWAG---DVYFPDFL 248 (395)
Q Consensus 208 ~~~~~y~~~~e~~~-------~g~~v~~~--------------------g~~~~---------~~~w~g---~~~~~Dft 248 (395)
+..+ +-|+++++ +++|+..+ |.++. ..+|.. .-.=+|+.
T Consensus 90 S~~h--~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~ 167 (495)
T PRK13840 90 SAES--PQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVH 167 (495)
T ss_pred CCCc--HHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCC
Confidence 4433 77777642 46776321 11111 123432 12335689
Q ss_pred CHHHHHHHHHHHHHHHhcCC
Q 048354 249 NPAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 249 np~a~~ww~~~~~~~~~~~~ 268 (395)
||++++...+.++.+++.|+
T Consensus 168 NP~V~~~i~~il~fwl~~GV 187 (495)
T PRK13840 168 SAAGWEYLMSILDRFAASHV 187 (495)
T ss_pred CHHHHHHHHHHHHHHHHCCC
Confidence 99999999999988888776
No 95
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=51.41 E-value=55 Score=36.16 Aligned_cols=81 Identities=11% Similarity=0.210 Sum_probs=53.2
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCC------cc--c-eEeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCce-e
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDA------YK--D-FTLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDPG-I 207 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~------~~--~-f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~-i 207 (395)
+-+.+.+.++-+++.|| ++||+-+-+... |. + +..|+ .|-. .+++.|++.+|++|+++|+=+-|. +
T Consensus 14 tf~~~~~~L~YL~~LGv--~~V~lsPi~~a~~gs~hGYdv~D~~~idp-~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGV--SHLYLSPILTAVPGSTHGYDVVDHSEINP-ELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred CHHHHHHhhHHHHHcCC--CEEEeCcCccCCCCCCCCCCCCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 56778888999999888 789998866521 11 1 22333 2332 268999999999999999966554 3
Q ss_pred ecC-CCchhHHHhhhc
Q 048354 208 STN-ETNDTFDRGMKA 222 (395)
Q Consensus 208 ~~~-~~y~~~~e~~~~ 222 (395)
+.+ ...+.|.+..++
T Consensus 91 a~~~~~n~wf~dvl~~ 106 (825)
T TIGR02401 91 AVHLEQNPWWWDVLKN 106 (825)
T ss_pred ccccccChHHHHHHHh
Confidence 333 123556655543
No 96
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=50.90 E-value=19 Score=33.08 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=40.2
Q ss_pred HhhcccC--CCCceE--EEEecccc------CCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 147 VAGYANA--SIPLEV--MWTDIDYM------DAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 147 ~~~~r~~--~iP~d~--i~lD~~~~------~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
++.+|+. ++|+|+ ++.++.-. .+-...++..+.=+++ .++++.+|+.|.|..+.++|.-..+
T Consensus 49 i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~--~~~l~~ik~~g~k~GlalnP~Tp~~ 120 (220)
T PRK08883 49 CKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHV--DRTLQLIKEHGCQAGVVLNPATPLH 120 (220)
T ss_pred HHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccH--HHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 4444543 688777 44444332 1122455555543444 8999999999999999999986554
No 97
>PLN02803 beta-amylase
Probab=49.41 E-value=61 Score=33.72 Aligned_cols=78 Identities=10% Similarity=0.128 Sum_probs=54.3
Q ss_pred CeEEEEEEe--ccccccCCCCChHHHHHHHhhcccCCCCceEEEEecccc--C--CccceEeCCCCCCCchHHHHHHHHH
Q 048354 120 GIIDLYFFA--GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--D--AYKDFTLDPINFPVDPMKTFVDNLH 193 (395)
Q Consensus 120 g~ld~y~~~--G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~L~ 193 (395)
..+.+|+++ +---......+.+.+..-++.++..| +|+|.+|.-|- + +-+.|.|. ..+++++-.+
T Consensus 84 ~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~G--VdGVmvDVWWGiVE~~~p~~YdWs-------gY~~l~~mvr 154 (548)
T PLN02803 84 SGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAG--VEGVMVDAWWGLVEKDGPMKYNWE-------GYAELVQMVQ 154 (548)
T ss_pred CceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcC--CCEEEEEeeeeeeccCCCCcCCcH-------HHHHHHHHHH
Confidence 457788887 33333334567788888888887755 58899996553 2 23344454 7899999999
Q ss_pred hcCCeEEeeeCce
Q 048354 194 KNGQKYVVIVDPG 206 (395)
Q Consensus 194 ~~G~k~~~~i~P~ 206 (395)
+.|+|+.+++-=+
T Consensus 155 ~~GLKlq~vmSFH 167 (548)
T PLN02803 155 KHGLKLQVVMSFH 167 (548)
T ss_pred HcCCeEEEEEEec
Confidence 9999997766433
No 98
>PLN02801 beta-amylase
Probab=49.39 E-value=62 Score=33.46 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=54.5
Q ss_pred ecCeEEEEEEe--ccccccCCCCChHHHHHHHhhcccCCCCceEEEEecccc--C--CccceEeCCCCCCCchHHHHHHH
Q 048354 118 IGGIIDLYFFA--GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--D--AYKDFTLDPINFPVDPMKTFVDN 191 (395)
Q Consensus 118 ~~g~ld~y~~~--G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~ 191 (395)
..+.+.+|+++ +---......+.+.+..-++.+++.| +|+|.+|.-|- + +-+.|.|. ..+++++-
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-------gY~~l~~m 82 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAG--VDGVMVDVWWGIVESKGPKQYDWS-------AYRSLFEL 82 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCccCcH-------HHHHHHHH
Confidence 34567788887 33323334557778888888888665 58899996553 2 22344444 78999999
Q ss_pred HHhcCCeEEeeeCce
Q 048354 192 LHKNGQKYVVIVDPG 206 (395)
Q Consensus 192 L~~~G~k~~~~i~P~ 206 (395)
+++.|+|+.+++.=|
T Consensus 83 vr~~GLKlq~vmSFH 97 (517)
T PLN02801 83 VQSFGLKIQAIMSFH 97 (517)
T ss_pred HHHcCCeEEEEEEec
Confidence 999999997766433
No 99
>PLN02705 beta-amylase
Probab=49.20 E-value=57 Score=34.48 Aligned_cols=77 Identities=6% Similarity=0.080 Sum_probs=53.6
Q ss_pred eEEEEEEe--ccccccCCCCChHHHHHHHhhcccCCCCceEEEEecccc--C--CccceEeCCCCCCCchHHHHHHHHHh
Q 048354 121 IIDLYFFA--GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--D--AYKDFTLDPINFPVDPMKTFVDNLHK 194 (395)
Q Consensus 121 ~ld~y~~~--G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~L~~ 194 (395)
.+.+||++ +---..-...+.+.+..-++.++..| +|+|.+|.-|- + +-+.|.|. .++++++-+++
T Consensus 246 ~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aG--VdGVmvDVWWGiVE~~~P~~YdWs-------gY~~L~~mvr~ 316 (681)
T PLN02705 246 YVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLN--VDGVVVDCWWGIVEGWNPQKYVWS-------GYRELFNIIRE 316 (681)
T ss_pred ceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcC--CCEEEEeeeeeEeecCCCCcCCcH-------HHHHHHHHHHH
Confidence 37788888 33323334557788888888887754 58899996553 2 23345554 78999999999
Q ss_pred cCCeEEeeeCce
Q 048354 195 NGQKYVVIVDPG 206 (395)
Q Consensus 195 ~G~k~~~~i~P~ 206 (395)
.|+|+.+++-=+
T Consensus 317 ~GLKlqvVmSFH 328 (681)
T PLN02705 317 FKLKLQVVMAFH 328 (681)
T ss_pred cCCeEEEEEEee
Confidence 999987766433
No 100
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=48.76 E-value=23 Score=32.69 Aligned_cols=63 Identities=13% Similarity=0.276 Sum_probs=40.3
Q ss_pred HHhhcccC--CCCceE--EEEecccc------CCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 146 VVAGYANA--SIPLEV--MWTDIDYM------DAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 146 ~~~~~r~~--~iP~d~--i~lD~~~~------~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
+++.+|+. ++|+|+ ++.++.-. .+-...++..+.=+++ .++++.+|+.|.|..+.++|.-..+
T Consensus 52 ~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~--~~~l~~Ir~~g~k~GlalnP~T~~~ 124 (223)
T PRK08745 52 VCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHV--HRTIQLIKSHGCQAGLVLNPATPVD 124 (223)
T ss_pred HHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccH--HHHHHHHHHCCCceeEEeCCCCCHH
Confidence 34455553 678777 44444332 1122444555433444 8999999999999999999986654
No 101
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=47.41 E-value=31 Score=32.01 Aligned_cols=56 Identities=29% Similarity=0.382 Sum_probs=39.3
Q ss_pred CCCCceE--EEEecccc-C-----CccceEeCCCC-CCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 153 ASIPLEV--MWTDIDYM-D-----AYKDFTLDPIN-FPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 153 ~~iP~d~--i~lD~~~~-~-----~~~~f~~d~~~-FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
.++|+|+ ++.++.-+ + +-...++..+. ..+| .++++.+|+.|.|..+.++|.-..+
T Consensus 58 t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~--~~~i~~Ik~~G~kaGlalnP~T~~~ 122 (229)
T PRK09722 58 ASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQA--FRLIDEIRRAGMKVGLVLNPETPVE 122 (229)
T ss_pred CCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchH--HHHHHHHHHcCCCEEEEeCCCCCHH
Confidence 4688887 55555332 1 12245677764 3445 8999999999999999999986554
No 102
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=46.17 E-value=65 Score=38.51 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=52.7
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCC-cc-------ce-EeCCCCCCC-chHHHHHHHHHhcCCeEEeeeCce-e
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDA-YK-------DF-TLDPINFPV-DPMKTFVDNLHKNGQKYVVIVDPG-I 207 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~-------~f-~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~-i 207 (395)
+-+.+.+.+.-+++.|| ++||+-+-+... .. +| ..|+ .|-. .+++.|++.+|++|+++++=+-|. +
T Consensus 756 tf~~~~~~l~Yl~~LGv--~~i~lsPi~~a~~gs~hGYdv~D~~~idp-~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 756 TFADAEAILPYLAALGI--SHVYASPILKARPGSTHGYDIVDHSQINP-EIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CHHHHHHHhHHHHHcCC--CEEEECCCcCCCCCCCCCCCCCCCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 56778888888888776 779998877631 11 11 2233 2221 268999999999999999966554 4
Q ss_pred ecC-CCchhHHHhhhc
Q 048354 208 STN-ETNDTFDRGMKA 222 (395)
Q Consensus 208 ~~~-~~y~~~~e~~~~ 222 (395)
+.+ ...+-|.+..++
T Consensus 833 ~~~~~~n~w~~dvl~~ 848 (1693)
T PRK14507 833 GVGGADNPWWLDVLEN 848 (1693)
T ss_pred CCCccCCHHHHHHHHh
Confidence 432 234666665543
No 103
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=44.08 E-value=67 Score=27.02 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=41.6
Q ss_pred hHHHHHHHhhcc-cCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 140 VSYLEGVVAGYA-NASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 140 ~~~v~~~~~~~r-~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
.+++.+.++.++ +.++|..-+. ..|++..+ +..|=.|.+.+.+++|+++|+|=++.+-|....+
T Consensus 40 ~~~~~~~~~~v~~~l~~~~~~~~--~~fqS~~g-----~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~D 104 (135)
T cd00419 40 PDQCEETARLVAERLGLPFDEYE--LAYQSRFG-----PGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSD 104 (135)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEE--EEecCCCC-----CCCCCCCCHHHHHHHHHHcCCCeEEEECCccccc
Confidence 556666666664 3354443332 35665443 3455566889999999999999999998844433
No 104
>PLN00197 beta-amylase; Provisional
Probab=43.18 E-value=86 Score=32.82 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=53.7
Q ss_pred CeEEEEEEe--ccccccCCCCChHHHHHHHhhcccCCCCceEEEEecccc--C--CccceEeCCCCCCCchHHHHHHHHH
Q 048354 120 GIIDLYFFA--GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--D--AYKDFTLDPINFPVDPMKTFVDNLH 193 (395)
Q Consensus 120 g~ld~y~~~--G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~L~ 193 (395)
..+.+|+++ +---......+.+.+..-++.++..| +|+|.+|.-|- + +-+.|.|. .++++++-.+
T Consensus 104 ~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~G--VdGVmvDvWWGiVE~~~p~~YdWs-------gY~~L~~mvr 174 (573)
T PLN00197 104 KGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAG--VEGIMMDVWWGLVERESPGVYNWG-------GYNELLEMAK 174 (573)
T ss_pred CCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeccCCCCcCCcH-------HHHHHHHHHH
Confidence 357888888 33323334557777888888887765 58899996553 2 23344444 7899999999
Q ss_pred hcCCeEEeeeCce
Q 048354 194 KNGQKYVVIVDPG 206 (395)
Q Consensus 194 ~~G~k~~~~i~P~ 206 (395)
+.|+|+.+++.=+
T Consensus 175 ~~GLKlq~VmSFH 187 (573)
T PLN00197 175 RHGLKVQAVMSFH 187 (573)
T ss_pred HcCCeEEEEEEec
Confidence 9999997766433
No 105
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=43.06 E-value=62 Score=30.14 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEee
Q 048354 137 YKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 137 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 202 (395)
+.+.+.++++++-+.++|||.-+-|+= .|.+....-+++-.. +|++.+.++.+.++|-.+++-
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP-~~~d~~~~~~~~l~~--~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIP-VYVDPNGGITVNLSD--NPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEe-cccCCCCcccccchh--hHHHHHHHHHHHhcCCEEEEE
Confidence 357889999999999999997776663 555443222222111 225566666667789887763
No 106
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=42.71 E-value=56 Score=28.26 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=38.9
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
+.+..++.++-+.+.|||.++-++. ..|=|+ .+.++++.-+++|+|+++-.
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvS-------------AHRTPe-~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVS-------------AHRTPE-KMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEe-------------ccCCHH-HHHHHHHHHHHCCCeEEEec
Confidence 3455677778888889999997765 455675 58888888999999987643
No 107
>PLN03059 beta-galactosidase; Provisional
Probab=42.38 E-value=58 Score=35.97 Aligned_cols=80 Identities=8% Similarity=0.124 Sum_probs=60.3
Q ss_pred EEEEe-ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCC-ccceEeCCCCCCCchHHHHHHHHHhcCCeEEe
Q 048354 124 LYFFA-GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDA-YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVV 201 (395)
Q Consensus 124 ~y~~~-G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~ 201 (395)
+.++. -+|..|- ..+..++.++++|..|+-.=..++-+.+.+. .+.|.|...+ |+.++++..++.|+.+++
T Consensus 44 ~~i~sG~iHY~R~---~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~----DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 44 RILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRY----DLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred EEEEEeCcccCcC---CHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchH----HHHHHHHHHHHcCCEEEe
Confidence 34444 4677663 7899999999999999876666665555543 4566665432 789999999999999999
Q ss_pred eeCceeecC
Q 048354 202 IVDPGISTN 210 (395)
Q Consensus 202 ~i~P~i~~~ 210 (395)
=.-|+|..+
T Consensus 117 RpGPYIcAE 125 (840)
T PLN03059 117 RIGPYICAE 125 (840)
T ss_pred cCCcceeee
Confidence 999998764
No 108
>PLN02905 beta-amylase
Probab=42.21 E-value=87 Score=33.33 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=53.5
Q ss_pred eEEEEEEe--ccccccCCCCChHHHHHHHhhcccCCCCceEEEEecccc--C--CccceEeCCCCCCCchHHHHHHHHHh
Q 048354 121 IIDLYFFA--GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--D--AYKDFTLDPINFPVDPMKTFVDNLHK 194 (395)
Q Consensus 121 ~ld~y~~~--G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~mi~~L~~ 194 (395)
.+.+|+++ +---......+.+.+..-+..++..| +|+|.+|.-|- + +-+.|.|. .++++++-+++
T Consensus 264 ~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aG--VdGVmvDVWWGiVE~~gP~~YdWs-------gY~~L~~mvr~ 334 (702)
T PLN02905 264 YVPVYVMLPLGVINMKCELADPDGLLKQLRILKSIN--VDGVKVDCWWGIVEAHAPQEYNWN-------GYKRLFQMVRE 334 (702)
T ss_pred ceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcC--CCEEEEeeeeeeeecCCCCcCCcH-------HHHHHHHHHHH
Confidence 47788887 43333344567778888888887754 58899996553 2 22344444 78999999999
Q ss_pred cCCeEEeeeCce
Q 048354 195 NGQKYVVIVDPG 206 (395)
Q Consensus 195 ~G~k~~~~i~P~ 206 (395)
.|+|+.+++-=+
T Consensus 335 ~GLKlqvVMSFH 346 (702)
T PLN02905 335 LKLKLQVVMSFH 346 (702)
T ss_pred cCCeEEEEEEec
Confidence 999997766433
No 109
>PRK09505 malS alpha-amylase; Reviewed
Probab=40.73 E-value=63 Score=35.07 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=41.4
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccC----------------C-ccceE-----eCCCCCCCc-hHHHHHHHHHhc
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMD----------------A-YKDFT-----LDPINFPVD-PMKTFVDNLHKN 195 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----------------~-~~~f~-----~d~~~FPdp-~~~~mi~~L~~~ 195 (395)
+-.-|.+-++-+++.|| ++|||-+-+.. . .+.++ .|+ +|-.. ++++||+++|++
T Consensus 228 dl~Gi~~kLdyl~~LGv--~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~-~~Gt~~dfk~Lv~~aH~~ 304 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGV--NALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDA-NMGTEADLRTLVDEAHQR 304 (683)
T ss_pred CHHHHHHhhHHHHHcCC--CEEEeCccccccccccccccccCCCcCCCCCCCccccccCCC-CCCCHHHHHHHHHHHHHC
Confidence 45667777777777665 77998765432 1 11112 222 34322 699999999999
Q ss_pred CCeEEeeeCc
Q 048354 196 GQKYVVIVDP 205 (395)
Q Consensus 196 G~k~~~~i~P 205 (395)
|+|||+=+-+
T Consensus 305 Gi~VilD~V~ 314 (683)
T PRK09505 305 GIRILFDVVM 314 (683)
T ss_pred CCEEEEEECc
Confidence 9999985543
No 110
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=39.23 E-value=61 Score=24.07 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=39.4
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhc
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKN 195 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~ 195 (395)
..-+.++.+.+.+++|++|.|.... ..-.|+.++..+.++.+.+++++|++-
T Consensus 15 ~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~ 66 (73)
T cd04934 15 HGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKL 66 (73)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHh
Confidence 4556788889999999999997632 334788888777654577888999883
No 111
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=39.19 E-value=87 Score=30.32 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHHH
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDR 218 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e 218 (395)
..+.+.+.++.+-+.||---+ ++-=- .......++.-+ +++++.+.++.-|+|+-+.++ |..
T Consensus 55 ~~~R~~~YARllASiGINgvv--lNNVN---a~~~~Lt~~~l~--~v~~lAdvfRpYGIkv~LSvn-----------Fas 116 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVV--LNNVN---ANPKLLTPEYLD--KVARLADVFRPYGIKVYLSVN-----------FAS 116 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE---S-SS-----CGGGSTTTHH--HHHHHHHHHHHTT-EEEEEE------------TTH
T ss_pred chhHHHHHHHHHhhcCCceEE--ecccc---cChhhcCHHHHH--HHHHHHHHHhhcCCEEEEEee-----------ccC
Confidence 345677777777777775433 32000 000011122222 567788888888888866652 211
Q ss_pred hhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC
Q 048354 219 GMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 219 ~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~ 268 (395)
-.+.|-+ .--|=.+|++++||++...++++.+.
T Consensus 117 P~~lggL-----------------~TaDPld~~V~~WW~~k~~eIY~~IP 149 (328)
T PF07488_consen 117 PIELGGL-----------------PTADPLDPEVRQWWKDKADEIYSAIP 149 (328)
T ss_dssp HHHTTS------------------S---TTSHHHHHHHHHHHHHHHHH-T
T ss_pred CcccCCc-----------------CcCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 1121111 11255699999999999999887655
No 112
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=38.93 E-value=27 Score=31.70 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=36.3
Q ss_pred CCCCceE--EEEeccc-cCC-----ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 153 ASIPLEV--MWTDIDY-MDA-----YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 153 ~~iP~d~--i~lD~~~-~~~-----~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
.++|+|+ ++.++.- .+. -...++..+.-+++ .++++.+|+.|.|+.+.++|.-..+
T Consensus 56 ~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~--~~~i~~ik~~g~k~GialnP~T~~~ 119 (201)
T PF00834_consen 56 TDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDP--KETIKYIKEAGIKAGIALNPETPVE 119 (201)
T ss_dssp SSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTH--HHHHHHHHHTTSEEEEEE-TTS-GG
T ss_pred CCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCH--HHHHHHHHHhCCCEEEEEECCCCch
Confidence 5678877 4444322 111 12445555566655 9999999999999999999987654
No 113
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=38.86 E-value=1.7e+02 Score=31.74 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=58.5
Q ss_pred hHHHHHHHhhcccCCCCceEEEE--eccccCCccceEeCCCCCCC-------chHHHHHHHH-HhcCCeEEeeeCce-ee
Q 048354 140 VSYLEGVVAGYANASIPLEVMWT--DIDYMDAYKDFTLDPINFPV-------DPMKTFVDNL-HKNGQKYVVIVDPG-IS 208 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~~~~f~~d~~~FPd-------p~~~~mi~~L-~~~G~k~~~~i~P~-i~ 208 (395)
.+.+.++++++++.||-.=.+.. |++ ++=.++..-||+ |.+..+.=.| |+.|+||=.|+.|. +.
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~-----gd~~~~s~yfP~~~lp~r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPD-----GDGLVKELYFPNRLLPMRADLFNRVAWQLRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCC-----CCccccccccCccccccccCCcCHHHHHHHHhhCCEEEEeccceeec
Confidence 34455566666666654322222 322 222344445553 1222222233 45699999999998 44
Q ss_pred cCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc
Q 048354 209 TNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT 266 (395)
Q Consensus 209 ~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 266 (395)
.....+.-.+. . ...+..-+...|.+ -+|-++|++|+|..+.+.++...
T Consensus 408 ~~~~~~~~~~~---~---~~~~~~~~~~~~~~---rl~P~~pe~r~~i~~i~~dla~~ 456 (671)
T PRK14582 408 LDPTLPRVKRL---D---TGEGKAQIHPEQYR---RLSPFDDRVRAQVGMLYEDLAGH 456 (671)
T ss_pred cCCCcchhhhc---c---ccCCccccCCCCCc---CCCCCCHHHHHHHHHHHHHHHHh
Confidence 43321221111 1 01111111222322 28999999999999999887654
No 114
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.10 E-value=64 Score=28.02 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 202 (395)
+.+-.++..+.+++.|||+|+-+.. ..|-|+ .+.++++..+++|.++++-
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~S-------------aHRtp~-~~~~~~~~a~~~g~~viIa 59 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVS-------------AHRTPE-LMLEYAKEAEERGIKVIIA 59 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEC-------------cccCHH-HHHHHHHHHHHCCCeEEEE
Confidence 4455777888889999999887664 345565 6788888888999877554
No 115
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=37.96 E-value=39 Score=33.39 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=37.2
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEe
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVV 201 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~ 201 (395)
.++|++++.++++.++|+.+|.+++==.++ +|- ..=|+ =++++-+..+++|+.+++
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEG-GDn----haSp~-Ff~kLrdi~~Kh~v~fiv 310 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEG-GDN----HASPD-FFRKLRDITKKHGVAFIV 310 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccC-CCc----cCCHH-HHHHHHHHHHhcCeEEEe
Confidence 458999999999999999999998633333 221 11121 135666666778877654
No 116
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=37.82 E-value=49 Score=28.82 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=28.8
Q ss_pred eEEEEeccccCC----ccceEeCCCCC--CCchHHHHHHHHHhcCCeEEeee
Q 048354 158 EVMWTDIDYMDA----YKDFTLDPINF--PVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 158 d~i~lD~~~~~~----~~~f~~d~~~F--Pdp~~~~mi~~L~~~G~k~~~~i 203 (395)
-.+.+|.|..-- ...+.-+++.| +-|+..++++.|+++|+++.+..
T Consensus 14 k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~T 65 (166)
T TIGR01664 14 KVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFT 65 (166)
T ss_pred cEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEe
Confidence 457778776511 11232334333 22367999999999999987755
No 117
>PRK08005 epimerase; Validated
Probab=37.55 E-value=45 Score=30.44 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=35.1
Q ss_pred CCCceE--EEEecccc-C-----CccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 154 SIPLEV--MWTDIDYM-D-----AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 154 ~iP~d~--i~lD~~~~-~-----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
.+|+|+ ++.++.-. . +-...++..+.=+++ ..+++.+|+.|.|..+.++|.-..+
T Consensus 58 ~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~--~~~l~~Ik~~G~k~GlAlnP~Tp~~ 120 (210)
T PRK08005 58 RHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNP--SEILADIRAIGAKAGLALNPATPLL 120 (210)
T ss_pred CCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCH--HHHHHHHHHcCCcEEEEECCCCCHH
Confidence 567776 44444222 1 112344444432444 8999999999999999999986544
No 118
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=36.76 E-value=55 Score=30.30 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=28.0
Q ss_pred ceEeCCCCCCCchHHHHHHHHHhcCC--eEEeeeCceeecC
Q 048354 172 DFTLDPINFPVDPMKTFVDNLHKNGQ--KYVVIVDPGISTN 210 (395)
Q Consensus 172 ~f~~d~~~FPdp~~~~mi~~L~~~G~--k~~~~i~P~i~~~ 210 (395)
..++..+.=+++ .++++.+|+.|. |..+.++|.-..+
T Consensus 94 ~It~H~Ea~~~~--~~~l~~Ik~~g~~~kaGlalnP~Tp~~ 132 (228)
T PRK08091 94 IVTLQVEQTHDL--ALTIEWLAKQKTTVLIGLCLCPETPIS 132 (228)
T ss_pred EEEEcccCcccH--HHHHHHHHHCCCCceEEEEECCCCCHH
Confidence 344555543544 899999999999 9999999987654
No 119
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=36.44 E-value=68 Score=30.14 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=40.4
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
.+...+++++....++|...|+.|..|.. -..+++.|.+.|+.+++-+...
T Consensus 169 ~~la~~~i~~a~~~g~~~~~vvaDs~y~~----------------~~~f~~~l~~~~~~~i~~vr~n 219 (273)
T PF13546_consen 169 PELALEMIDRARQAGIPARWVVADSWYGS----------------SPAFRKALRERGLHYIGRVRSN 219 (273)
T ss_pred HHHHHHHHHHHHhcccccceEEeccccCC----------------hHHHHHHHHHCCceEEEeeccC
Confidence 45577889999999999999999955531 1788999999999988876444
No 120
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=36.24 E-value=1.5e+02 Score=20.91 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=38.4
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEE
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYV 200 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~ 200 (395)
.-.+.++.+-+.++||-+..++.-.. .+...+.++. .|+ ++..+.|+++|+++.
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~~--~~~~~~rl~~---~~~--~~~~~~L~~~G~~v~ 65 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIADT--SEFGILRLIV---SDP--DKAKEALKEAGFAVK 65 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEec--CCCCEEEEEE---CCH--HHHHHHHHHCCCEEE
Confidence 34578889999999999999887432 1224444433 333 788999999999875
No 121
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=35.57 E-value=46 Score=29.41 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=40.8
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhc-CCeEEeeeCcee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKN-GQKYVVIVDPGI 207 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~-G~k~~~~i~P~i 207 (395)
-++|...+++.++..+..+ .+++|+...... ......+ ...+++++++++ |.++++...+..
T Consensus 66 a~~qA~~f~~~~~~~~~~~-~~~lD~E~~~~~-----~~~~~~~-~~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 66 PEEQAENFYNTIKGKKMDL-KPALDVEVNFGL-----SKDELND-YVLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred HHHHHHHHHHhccccCCCC-CeEEEEecCCCC-----CHHHHHH-HHHHHHHHHHHHHCCCeEEEecHHH
Confidence 4677888888888775433 357887654431 1111111 458899999998 999988876654
No 122
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=34.59 E-value=2e+02 Score=28.31 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCCChHHHHHHHhhcccCCCCceEEEEecc--cc---CCccceE----eC-CCCCCCchHHHHHHHHHhcCCeEEeeeC-
Q 048354 136 GYKNVSYLEGVVAGYANASIPLEVMWTDID--YM---DAYKDFT----LD-PINFPVDPMKTFVDNLHKNGQKYVVIVD- 204 (395)
Q Consensus 136 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~~~f~----~d-~~~FPdp~~~~mi~~L~~~G~k~~~~i~- 204 (395)
.|.+.+.|+++++.+-..++-.=.+++..+ |- .++...+ +. ...|...+++++++..+++||++|+-|+
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 13 HFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred cCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC
Confidence 445799999999999999998777776532 11 1111110 11 1123333789999999999999998663
Q ss_pred ceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhc
Q 048354 205 PGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNT 266 (395)
Q Consensus 205 P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 266 (395)
|+-...- -..+.+. .+... ......+-......+|.++|++.++..+.++++.+.
T Consensus 93 PGH~~a~-~~~~p~l-----~~~~~-~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 93 PGHTGSW-GQGYPEL-----LTGCY-AVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred chhhHHH-HHhChhh-----hCCCC-ccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 3322110 0011111 11110 000000001124568999999999999988887653
No 123
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.12 E-value=3.3e+02 Score=26.84 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHhhcccCCCCceEEEEecc--cc---CCc------cceEe-----------C----CCCCCCchHHHHH
Q 048354 136 GYKNVSYLEGVVAGYANASIPLEVMWTDID--YM---DAY------KDFTL-----------D----PINFPVDPMKTFV 189 (395)
Q Consensus 136 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~------~~f~~-----------d----~~~FPdp~~~~mi 189 (395)
.|.+.+.|+++++.+-..++-.=.+++-.+ |- ..+ +.+.- + ...|...++++++
T Consensus 13 ~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 92 (357)
T cd06563 13 HFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIV 92 (357)
T ss_pred cCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHH
Confidence 355899999999999999888766766322 21 011 11110 0 1223333789999
Q ss_pred HHHHhcCCeEEeeeC-ceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHh
Q 048354 190 DNLHKNGQKYVVIVD-PGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 190 ~~L~~~G~k~~~~i~-P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
+..+++|++||+-|+ |+-.. ..-++. ..+........+... .......+|.++|++.++..+.++++.+
T Consensus 93 ~yA~~rgI~VIPEID~PGH~~-----a~l~~~-pel~~~~~~~~~~~~-~~~~~~~L~~~~~~t~~f~~~ll~E~~~ 162 (357)
T cd06563 93 AYAAERGITVIPEIDMPGHAL-----AALAAY-PELGCTGGPGSVVSV-QGVVSNVLCPGKPETYTFLEDVLDEVAE 162 (357)
T ss_pred HHHHHcCCEEEEecCCchhHH-----HHHHhC-ccccCCCCCCccccc-cCcCCCccCCCChhHHHHHHHHHHHHHH
Confidence 999999999988653 22111 010100 001111100000000 1112467899999999999998888765
No 124
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=33.78 E-value=1.9e+02 Score=28.24 Aligned_cols=200 Identities=14% Similarity=0.094 Sum_probs=103.0
Q ss_pred ccCCCCChHHHHHHHhhcccCCCCceEEEEecc--cc---CCccceEe----------CCCCCCCchHHHHHHHHHhcCC
Q 048354 133 CRYGYKNVSYLEGVVAGYANASIPLEVMWTDID--YM---DAYKDFTL----------DPINFPVDPMKTFVDNLHKNGQ 197 (395)
Q Consensus 133 sr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~~~f~~----------d~~~FPdp~~~~mi~~L~~~G~ 197 (395)
+|. |.+.+.|+++++.+-..++-.=.+++-.+ |- ..+...+- ....+...+++++++.-+++|+
T Consensus 11 aR~-f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI 89 (329)
T cd06568 11 ARH-FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHI 89 (329)
T ss_pred cCC-CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 443 66999999999999999998877777432 21 11111111 0123444478999999999999
Q ss_pred eEEeeeC-ceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 048354 198 KYVVIVD-PGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLASRPVFYFD 276 (395)
Q Consensus 198 k~~~~i~-P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~~d~~~~~ 276 (395)
+||+-|+ |+-... -...|.+....+.. -..+. .+.-....+|.++|++.++..+.++++.+.-.
T Consensus 90 ~vIPEiD~PGH~~a-~~~~~p~l~~~~~~----~~~~~--~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~-------- 154 (329)
T cd06568 90 TVVPEIDMPGHTNA-ALAAYPELNCDGKA----KPLYT--GIEVGFSSLDVDKPTTYEFVDDVFRELAALTP-------- 154 (329)
T ss_pred EEEEecCCcHHHHH-HHHhChhhccCCCC----Ccccc--ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC--------
Confidence 9998663 222110 00011111111000 00110 01011346899999999999888888764321
Q ss_pred CCCccccCCCCcccccCCCc-cccccchHHHHHHHHHHHHHHhcCCCcEEEEcccccCCCccc--eeecCCCCCCchHHH
Q 048354 277 DPPYKISNGGGGKQINDRTF-PASHNLYGLLEAKATHAALINVTGKRPFILSRSTFVSSGKYA--AHLTGDNAARWDDLA 353 (395)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~t~-~~~hN~Y~~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry~--~~W~GD~~s~W~~L~ 353 (395)
. ++ +. +.|... ...+.+|..+..+. .+.+++ .++++.++.-..-.+..+-. ..|.++.. .+.++
T Consensus 155 ~-~~-iH-------iGgDE~~~~~~~~~~~f~~~~-~~~v~~-~Gk~~~~W~d~~~~~l~~~~iv~~W~~~~~--~~~~~ 221 (329)
T cd06568 155 G-PY-IH-------IGGDEAHSTPHDDYAYFVNRV-RAIVAK-YGKTPVGWQEIARADLPAGTVAQYWSDRAP--DADAA 221 (329)
T ss_pred C-Ce-EE-------EecccCCCCchHHHHHHHHHH-HHHHHH-CCCeEEEECcccccCCCCCeEEEECCCCCC--chHHH
Confidence 0 11 00 111110 11345565555443 344444 36788877765433333333 47765432 13444
Q ss_pred HHHHHHHh
Q 048354 354 YSILAILK 361 (395)
Q Consensus 354 ~~I~~~l~ 361 (395)
..+..+..
T Consensus 222 ~~~~~G~~ 229 (329)
T cd06568 222 AALDKGAK 229 (329)
T ss_pred HHHHCCCC
Confidence 44444333
No 125
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=33.75 E-value=83 Score=29.17 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=41.6
Q ss_pred ccccccCCCCChH----HHHHHHhhcccCCCCceEEEEecccc--C--------CccceEeC----------CCCCCCch
Q 048354 129 GFHQCRYGYKNVS----YLEGVVAGYANASIPLEVMWTDIDYM--D--------AYKDFTLD----------PINFPVDP 184 (395)
Q Consensus 129 G~~qsr~~y~~~~----~v~~~~~~~r~~~iP~d~i~lD~~~~--~--------~~~~f~~d----------~~~FPdp~ 184 (395)
.|+.+.....+.+ ++...++.+...+=..+++++|+|=+ + .++.-.+| .+.=|.|.
T Consensus 45 ~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~ 124 (229)
T TIGR01675 45 DYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPE 124 (229)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHH
Confidence 4554444334444 34444444444444568999998733 0 11111122 22223446
Q ss_pred HHHHHHHHHhcCCeEEeee
Q 048354 185 MKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 185 ~~~mi~~L~~~G~k~~~~i 203 (395)
..++++.|+++|+++++..
T Consensus 125 al~l~~~l~~~G~~Vf~lT 143 (229)
T TIGR01675 125 GLKLYQKIIELGIKIFLLS 143 (229)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 7889999999999976643
No 126
>PRK06769 hypothetical protein; Validated
Probab=33.50 E-value=76 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=28.3
Q ss_pred CceEEEEeccccC-CccceEe--CCCCCCCchHHHHHHHHHhcCCeEEeee
Q 048354 156 PLEVMWTDIDYMD-AYKDFTL--DPINFPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 156 P~d~i~lD~~~~~-~~~~f~~--d~~~FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
|.-+|.+|-|=.- +++.+.. +-+-|| +++++++.||++|+++.+..
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~p--gv~e~L~~Lk~~G~~l~I~T 51 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFP--FTKASLQKLKANHIKIFSFT 51 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECC--CHHHHHHHHHHCCCEEEEEE
Confidence 4556777754432 1211111 113466 66999999999999997654
No 127
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=33.20 E-value=1.1e+02 Score=25.37 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=36.0
Q ss_pred ChHHHHHHHhhccc-CCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 139 NVSYLEGVVAGYAN-ASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 139 ~~~~v~~~~~~~r~-~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
..+.++++++++++ .++|+..=+++ + -.|.+++.+++|.++|.+-++.+ |..-
T Consensus 15 ~~~~~~~la~~l~~~~~~~v~~afle-----------~-----~~P~l~~~l~~l~~~G~~~ivVv-PlFL 68 (125)
T cd03415 15 FNEDMEEWAAYLERKLGVPVYLTYNE-----------Y-----AEPNWRDLLNELLSEGYGHIIIA-LAFL 68 (125)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEee-----------c-----CCCCHHHHHHHHHHCCCCEEEEe-hhhc
Confidence 56788999999964 35665443332 1 23467999999999998866655 6543
No 128
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=32.99 E-value=1.2e+02 Score=27.90 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=55.7
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC--CchhH
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE--TNDTF 216 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~--~y~~~ 216 (395)
+.+.|++.++-+++++|-+-. +-.-|. -++.+-++.++.+++++.|+.++=+-+-.|.... ....-
T Consensus 58 ~kd~V~ekid~y~e~~i~v~p---------GGtlfe---~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lI 125 (258)
T COG1809 58 DKDQVKEKIDMYKENDIYVFP---------GGTLFE---IAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLI 125 (258)
T ss_pred cHHHHHHHHHHHHHcCceecC---------CceEEE---eehhcccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHH
Confidence 567899999999999974211 111111 2223325789999999999999988888877652 23456
Q ss_pred HHhhhcceEEecC
Q 048354 217 DRGMKADIYIKRE 229 (395)
Q Consensus 217 ~e~~~~g~~v~~~ 229 (395)
+++.++|+.|...
T Consensus 126 e~a~d~Gf~vlsE 138 (258)
T COG1809 126 ERAVDEGFMVLSE 138 (258)
T ss_pred HHHHhcccEEehh
Confidence 7888999998875
No 129
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.05 E-value=87 Score=30.53 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=38.3
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEe
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVV 201 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~ 201 (395)
.++|..+++.||+.+|-+.++++- .|. . + |. -..+.++|..+|+++-+
T Consensus 91 d~dV~RLID~frel~~~v~sVViT-qye---------d-~-p~--a~aF~~rLEr~Gikvy~ 138 (493)
T COG4868 91 DQDVFRLIDKFRELDIKVGSVVIT-QYE---------D-Q-PA--ADAFRTRLERNGIKVYL 138 (493)
T ss_pred hHHHHHHHHHHHhcCeeeeeEEEE-ecC---------C-C-hh--HHHHHHHHHhcCcceEE
Confidence 568999999999999999999885 221 1 1 43 38899999999999865
No 130
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=31.64 E-value=1.9e+02 Score=29.70 Aligned_cols=111 Identities=10% Similarity=0.034 Sum_probs=59.9
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHHH
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFDR 218 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e 218 (395)
+.+++.+.++.++++||.+.+-.+ -+ +..+..- ++++.++.+.+.+...+. +.... .-.+-+.|++
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~I-----iG-----lPget~e--~~~~ti~~~~~l~~~~~~-~~~l~-P~PGT~l~~~ 386 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFI-----LG-----LPGETRE--TIRKTIDFAKELNPHTIQ-VSLAA-PYPGTELYDQ 386 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEE-----Ee-----CCCCCHH--HHHHHHHHHHhcCCCcee-eeecc-cCCCcHHHHH
Confidence 677888888888999987654222 01 1111111 467777777777654322 11111 1123378999
Q ss_pred hhhcceEEecCCccceeeEecCcc--cccCCCCHHHHHHHHHHHHHHH
Q 048354 219 GMKADIYIKREGVPYKGKVWAGDV--YFPDFLNPAIETFWEGEIKLFR 264 (395)
Q Consensus 219 ~~~~g~~v~~~g~~~~~~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~ 264 (395)
+.++|++..+.-..+....+ ... ...+++..+..+++.+.+++++
T Consensus 387 ~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~s~~el~~~~~~~~~~~~ 433 (472)
T TIGR03471 387 AKQNGWITQDSAAMVDDTGH-QMAAISYPHLSREEIFDGVERFYKRFY 433 (472)
T ss_pred HHHCCCcCCchhhcccCCCc-eeeeecCCCCCHHHHHHHHHHHHHHHc
Confidence 99998865432100100000 011 1256777777777777666654
No 131
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=31.46 E-value=75 Score=26.45 Aligned_cols=51 Identities=4% Similarity=-0.009 Sum_probs=34.9
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCcc--ceEeCCCCCCCchHHHHHHHHHh
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYK--DFTLDPINFPVDPMKTFVDNLHK 194 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~--~f~~d~~~FPdp~~~~mi~~L~~ 194 (395)
.++||..+++.+|++||.+.+|+.-+-+.+..- -.-|.. -|| .+|.+.+++
T Consensus 66 l~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~---gdp--~~lA~~vr~ 118 (123)
T PF07485_consen 66 LEDEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGV---GDP--AKLARKVRA 118 (123)
T ss_pred cHHHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEec---CCH--HHHHHHHHH
Confidence 699999999999999999999988543332211 111221 245 778877775
No 132
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=31.43 E-value=75 Score=30.31 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=40.6
Q ss_pred ccccccCCCCChHHHHHHHhhcc-cCCC-CceEEEEeccccC----------CccceEeCCCCC-----------CCchH
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYA-NASI-PLEVMWTDIDYMD----------AYKDFTLDPINF-----------PVDPM 185 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r-~~~i-P~d~i~lD~~~~~----------~~~~f~~d~~~F-----------Pdp~~ 185 (395)
.|..+.....+.+.|.+.+..|- .... ..|++++|+|=+- .++.=.+|++.| |.|..
T Consensus 71 ~Y~~ggqY~~D~~~v~~~a~~y~~~~~~~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~a 150 (275)
T TIGR01680 71 EYIEGEQYRSDSKTVNQQAYFFARDLEVHEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPET 150 (275)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhCcCCCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHH
Confidence 44444443344444444444442 1111 2599999986541 111111222223 24577
Q ss_pred HHHHHHHHhcCCeEEeee
Q 048354 186 KTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 186 ~~mi~~L~~~G~k~~~~i 203 (395)
.++.+.|+++|++++++-
T Consensus 151 l~ly~~l~~~G~kIf~VS 168 (275)
T TIGR01680 151 LKNYNKLVSLGFKIIFLS 168 (275)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 899999999999976643
No 133
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=30.64 E-value=83 Score=29.61 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=53.5
Q ss_pred EeccccccCCCCChHHHHHHHhhcccC-------CCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHh---cC
Q 048354 127 FAGFHQCRYGYKNVSYLEGVVAGYANA-------SIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHK---NG 196 (395)
Q Consensus 127 ~~G~~qsr~~y~~~~~v~~~~~~~r~~-------~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~---~G 196 (395)
++||-.+.++-++.++|++-+++|..- ++.+|+|.+|---. + .+..+ -++.+.+.+|. .+
T Consensus 70 vlGYV~T~Yg~R~~~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfDE~p~----~----~~~~~--y~~~l~~~vk~~~~~~ 139 (253)
T PF12138_consen 70 VLGYVHTSYGSRPLSEVKADIDTYASWYGQSEDYGYRVDGIFFDEAPN----D----YANLP--YYQNLYNYVKSAFGLG 139 (253)
T ss_pred EEEEEEccccCCCHHHHHHHHHHHhhccccccCCCcccceEEEecCCC----c----HHHHH--HHHHHHHHHHhccccC
Confidence 348888888889999999999999988 69999999993111 1 12222 46777777887 45
Q ss_pred CeEEeeeCceeecC
Q 048354 197 QKYVVIVDPGISTN 210 (395)
Q Consensus 197 ~k~~~~i~P~i~~~ 210 (395)
-.-.+..+|+....
T Consensus 140 ~~~~VV~NPGt~~p 153 (253)
T PF12138_consen 140 GDGLVVLNPGTAVP 153 (253)
T ss_pred CCCEEEeCCCCCCC
Confidence 55667778998543
No 134
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=30.08 E-value=1.6e+02 Score=22.73 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhc-CCeE
Q 048354 142 YLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKN-GQKY 199 (395)
Q Consensus 142 ~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~-G~k~ 199 (395)
.+...-+..+++++|...+-.+..+-...-.|-+..+.-+ |+++|++.|+.. +.|+
T Consensus 27 al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rv--DFR~Lvr~L~~~f~~RI 83 (88)
T PF04468_consen 27 ALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRV--DFRELVRDLAREFKTRI 83 (88)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcC--cHHHHHHHHHHHhCceE
Confidence 3445556678889887666554433333346666677777 679999999975 4443
No 135
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.73 E-value=1.3e+02 Score=27.67 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=47.7
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
+.+.+++.++++|+. +|.+++-.-|-.. ....|.+..+++.++|-+.|+-+++--+|++...
T Consensus 160 ~~~~~~~~i~~lr~~---~D~vIv~~H~G~e-------~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~ 221 (239)
T cd07381 160 DLERIAADIAEAKKK---ADIVIVSLHWGVE-------YSYYPTPEQRELARALIDAGADLVIGHHPHVLQG 221 (239)
T ss_pred CHHHHHHHHHHHhhc---CCEEEEEecCccc-------CCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCC
Confidence 467788889999886 8999888766332 2245665567888888889999999999998754
No 136
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=28.28 E-value=53 Score=28.84 Aligned_cols=73 Identities=10% Similarity=0.097 Sum_probs=44.8
Q ss_pred cccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcC-CeEEeeeCceee
Q 048354 130 FHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNG-QKYVVIVDPGIS 208 (395)
Q Consensus 130 ~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G-~k~~~~i~P~i~ 208 (395)
||-++-.-.-++|...+++..+.. .+--.+++|........ .+....+ .+++++++|++.| .++++...|..-
T Consensus 57 Yhy~~~~~~a~~qa~~fi~~~~~~-~~~~~~~lDvE~~~~~~----~~~~~~~-~~~~f~~~~~~~gg~~~~iY~~~~~~ 130 (186)
T cd00599 57 YHFARPCANAEAQADNFVNTVPRD-PGSLPLVLDVEDTGGGC----SAAALAA-WLNAFLNEVEALTGKKPIIYTSPSFW 130 (186)
T ss_pred EEEecCCCCHHHHHHHHHHHccCc-CCCCCeEEEEecCCCCC----CHHHHHH-HHHHHHHHHHHHHCCceEEEEcHHHH
Confidence 444343222366888888888886 44555778865543221 1111111 4688999999997 888888776643
No 137
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=27.98 E-value=1.2e+02 Score=26.26 Aligned_cols=43 Identities=16% Similarity=0.372 Sum_probs=28.8
Q ss_pred CceEEEEeccccCCccceEeCC-CCCCCchHHHHHHHHHhcCCeEEeeeC
Q 048354 156 PLEVMWTDIDYMDAYKDFTLDP-INFPVDPMKTFVDNLHKNGQKYVVIVD 204 (395)
Q Consensus 156 P~d~i~lD~~~~~~~~~f~~d~-~~FPdp~~~~mi~~L~~~G~k~~~~i~ 204 (395)
.+.++++|.|-+-. .++. .-|| ++.++++.|+++|+++++..+
T Consensus 24 ~v~~vv~D~Dgtl~----~~~~~~~~p--gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 24 GIKGVVLDKDNTLV----YPDHNEAYP--ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred CCCEEEEecCCccc----cCCCCCcCh--hHHHHHHHHHHcCCEEEEEeC
Confidence 55678888653311 1122 3566 679999999999999866543
No 138
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=27.75 E-value=67 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHhhcccCCCCc-eEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCcee
Q 048354 142 YLEGVVAGYANASIPL-EVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGI 207 (395)
Q Consensus 142 ~v~~~~~~~r~~~iP~-d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i 207 (395)
|.+-+++..+..++|. ..+++|+...... +++.-.+ .++.|++++++.|++.++...+..
T Consensus 72 eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~-----~~~~~~~-~~~~f~~~v~~~G~~~~iYt~~~~ 132 (196)
T cd06415 72 EADYFLNSAQQAGLPKGSYLALDYEQGSGN-----SKAANTS-AILAFMDTIKDAGYKPMLYSYKPL 132 (196)
T ss_pred HHHHHHHHhhhcCCCCCCEEEEEEecCCCC-----CHHHHHH-HHHHHHHHHHHhCCCcEEEecHHH
Confidence 4444677777778864 5688887653221 1111111 357888999999999887765543
No 139
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=27.12 E-value=92 Score=33.47 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=41.3
Q ss_pred CCceEEEEeccccC---------Ccc-------ceEeCCCCCC-CchHHHHHHHHHhcCCeEEeeeCceeecCCCchhHH
Q 048354 155 IPLEVMWTDIDYMD---------AYK-------DFTLDPINFP-VDPMKTFVDNLHKNGQKYVVIVDPGISTNETNDTFD 217 (395)
Q Consensus 155 iP~d~i~lD~~~~~---------~~~-------~f~~d~~~FP-dp~~~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~ 217 (395)
+-+++||+-+-|.. ... ++.+|+ +|- ..++++|++..|++|+|+++-+-|.-.-+. .+ |+
T Consensus 86 LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp-~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~g-hd-F~ 162 (688)
T TIGR02455 86 IGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDP-LLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKG-AD-FR 162 (688)
T ss_pred hCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-cc-hH
Confidence 45688999987765 111 333343 222 126899999999999999987777654432 23 66
Q ss_pred Hhhh
Q 048354 218 RGMK 221 (395)
Q Consensus 218 e~~~ 221 (395)
.+..
T Consensus 163 lAr~ 166 (688)
T TIGR02455 163 LAEL 166 (688)
T ss_pred HHhh
Confidence 5543
No 140
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=26.85 E-value=62 Score=30.18 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCeEEeeeCceee
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
.++..+++||+.|+++.+-++|-..
T Consensus 112 ~l~~~i~~L~~~gIrvSLFiDP~~~ 136 (239)
T PF03740_consen 112 RLKPVIKRLKDAGIRVSLFIDPDPE 136 (239)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-S-HH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCHH
Confidence 6899999999999999999999764
No 141
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=26.77 E-value=64 Score=30.00 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCeEEeeeCceee
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
.++..+++||+.|+++.+-++|-..
T Consensus 111 ~l~~~i~~l~~~gI~VSLFiDP~~~ 135 (237)
T TIGR00559 111 KLCELVKRFHAAGIEVSLFIDADKD 135 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 5899999999999999999988743
No 142
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=26.50 E-value=65 Score=29.88 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCeEEeeeCceee
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
.++..+++||+.|+++.+-++|-..
T Consensus 111 ~l~~~i~~l~~~gI~VSLFiDPd~~ 135 (234)
T cd00003 111 KLKPIIERLKDAGIRVSLFIDPDPE 135 (234)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 5899999999999999999988754
No 143
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=26.24 E-value=84 Score=27.99 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=38.2
Q ss_pred hHHHHHHHhhcccCCCCceE-EEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCC-eEEeeeCce
Q 048354 140 VSYLEGVVAGYANASIPLEV-MWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQ-KYVVIVDPG 206 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~-i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~-k~~~~i~P~ 206 (395)
++|...+++.+++.++|.+. +++|+..... .....+ ..+++++++++.|. +.++...+.
T Consensus 73 ~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~-------~~~~~~-~~~~F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 73 QAEARYFANTAKSLGLSKNTVMVADMEDSSS-------SGNATA-NVNAFWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEeecCCC-------cchHHH-HHHHHHHHHHHcCCCCcEEEccHH
Confidence 45667777888888887664 5688654322 111111 35889999999998 677766554
No 144
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.21 E-value=1.4e+02 Score=20.53 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeE
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~ 199 (395)
-.+.++++-+.++|+-+..+..-..-..+.....+.-+. + +...+.|+++|+++
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~---~--~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED---I--EKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC---H--HHHHHHHHHCCceE
Confidence 457788888999999988776521111233333333322 3 78899999999876
No 145
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=26.12 E-value=67 Score=29.92 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCeEEeeeCceee
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
.++..+++||+.|+++.+-++|-..
T Consensus 114 ~l~~~i~~L~~~gIrVSLFidP~~~ 138 (239)
T PRK05265 114 KLKPAIARLKDAGIRVSLFIDPDPE 138 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 6899999999999999999988754
No 146
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=25.99 E-value=1.1e+02 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.0
Q ss_pred CCCchHHHHHHHHHhcCCeEEee
Q 048354 180 FPVDPMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 180 FPdp~~~~mi~~L~~~G~k~~~~ 202 (395)
|| +..++++.|+++|+++.+.
T Consensus 31 ~~--gv~e~L~~Lk~~g~~l~i~ 51 (128)
T TIGR01681 31 IK--EIRDKLQTLKKNGFLLALA 51 (128)
T ss_pred HH--HHHHHHHHHHHCCeEEEEE
Confidence 66 7799999999999998754
No 147
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=25.98 E-value=1.6e+02 Score=21.63 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=38.1
Q ss_pred HHHHHHHhhcccCCCCceEEEEeccccCCcc---ceEeCCCCCCCchHHHHHHHHHhcC
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYMDAYK---DFTLDPINFPVDPMKTFVDNLHKNG 196 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~---~f~~d~~~FPdp~~~~mi~~L~~~G 196 (395)
-++.++.--+|-.++|+.+......++...+ -...+.+.++|. ..+++.|++++
T Consensus 17 p~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~--~~Ii~~L~~~~ 73 (73)
T cd03078 17 PECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGP--EKIIEYLRKQG 73 (73)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecCh--HHHHHHHHHcC
Confidence 4677777777889999988865544554322 444567788866 88999998764
No 148
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.86 E-value=2.3e+02 Score=27.79 Aligned_cols=71 Identities=20% Similarity=0.378 Sum_probs=48.0
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCc-eEEEEeccccCCc--cceEeCCCCCCCchHHHHHHHHHh--cCCeEEeee
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPL-EVMWTDIDYMDAY--KDFTLDPINFPVDPMKTFVDNLHK--NGQKYVVIV 203 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~-d~i~lD~~~~~~~--~~f~~d~~~FPdp~~~~mi~~L~~--~G~k~~~~i 203 (395)
|.|.-+|.+ +.+++.++++.+.+.|++. ++ .+-++. ..|......+|+ .+.++.+++ .+.|+...+
T Consensus 14 G~q~~~~~f-~~~~~~~i~~~L~~aGv~~IEv-----g~~~g~g~~s~~~g~~~~~~---~e~i~~~~~~~~~~~~~~ll 84 (337)
T PRK08195 14 GMHAVRHQY-TLEQVRAIARALDAAGVPVIEV-----THGDGLGGSSFNYGFGAHTD---EEYIEAAAEVVKQAKIAALL 84 (337)
T ss_pred cCcCCCCcc-CHHHHHHHHHHHHHcCCCEEEe-----ecCCCCCCccccCCCCCCCH---HHHHHHHHHhCCCCEEEEEe
Confidence 777767766 7889999999999999984 33 222222 245555556663 567777754 367888777
Q ss_pred Cceee
Q 048354 204 DPGIS 208 (395)
Q Consensus 204 ~P~i~ 208 (395)
.|.+.
T Consensus 85 ~pg~~ 89 (337)
T PRK08195 85 LPGIG 89 (337)
T ss_pred ccCcc
Confidence 77654
No 149
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.58 E-value=3.6e+02 Score=27.66 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=74.9
Q ss_pred ccCCCCChHHHHHHHhhcccCCCCceEEEEecc--ccC------------CccceEeC-------------------CCC
Q 048354 133 CRYGYKNVSYLEGVVAGYANASIPLEVMWTDID--YMD------------AYKDFTLD-------------------PIN 179 (395)
Q Consensus 133 sr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~~------------~~~~f~~d-------------------~~~ 179 (395)
+|. |.+.+.|+++++.+-..++-.=.++|-.+ |-- .++.++.. ...
T Consensus 15 aR~-f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~ 93 (445)
T cd06569 15 ARN-FHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGY 93 (445)
T ss_pred cCC-CCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCc
Confidence 344 45899999999999999999888887533 310 11111110 123
Q ss_pred CCCchHHHHHHHHHhcCCeEEeeeC-ceeecC------CCchhHHHhhh----cceEEecCC--ccceeeEecCcccccC
Q 048354 180 FPVDPMKTFVDNLHKNGQKYVVIVD-PGISTN------ETNDTFDRGMK----ADIYIKREG--VPYKGKVWAGDVYFPD 246 (395)
Q Consensus 180 FPdp~~~~mi~~L~~~G~k~~~~i~-P~i~~~------~~y~~~~e~~~----~g~~v~~~g--~~~~~~~w~g~~~~~D 246 (395)
|...+++++++.-+++|++||+-|+ |+-... ..|+.+.+.-. ..+.+.++. ..+. .++.-....+|
T Consensus 94 YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~L~ 172 (445)
T cd06569 94 YSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYL-SVQFYTDNVIN 172 (445)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccc-ccccccccccc
Confidence 4444789999999999999988663 432211 11222211100 012222221 0111 11111235689
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 048354 247 FLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 247 ftnp~a~~ww~~~~~~~~~ 265 (395)
-+||++.++..+.++++.+
T Consensus 173 p~~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 173 PCMPSTYRFVDKVIDEIAR 191 (445)
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 150
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=25.55 E-value=65 Score=28.62 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=37.3
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCce
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
++|...+++..+..+.-+ .+++|......... ..++....+ .+.+++++|++.|.++++...+.
T Consensus 73 ~~qA~~f~~~~~~~~~~~-~~~lD~E~~~~~~~-~~~~~~~~~-~~~~f~~~v~~~G~~~~iY~~~~ 136 (191)
T cd06414 73 REEAEFVLRLIKGYKLSY-PVYYDLEDETQLGA-GLSKDQRTD-IANAFCETIEAAGYYPGIYANLS 136 (191)
T ss_pred HHHHHHHHHHhhccCCCC-CeEEEeecCCCCCC-CCCHHHHHH-HHHHHHHHHHHcCCCeEEEecHH
Confidence 456777777777664322 25788765432110 011111111 35888999999999988877554
No 151
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.95 E-value=96 Score=22.03 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=37.5
Q ss_pred HHHHHHhhcccCCCCceEEEEecccc--CCccceEeCCCCCCCchHHHHHHHHHhcCCeE
Q 048354 142 YLEGVVAGYANASIPLEVMWTDIDYM--DAYKDFTLDPINFPVDPMKTFVDNLHKNGQKY 199 (395)
Q Consensus 142 ~v~~~~~~~r~~~iP~d~i~lD~~~~--~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~ 199 (395)
.+.++++.+.++|+.+..+.....-. .+...+.++-. + +.+++++.|+++|+++
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~---~-~~~~~~~~L~~~G~~v 69 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ---E-DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH---H-HHHHHHHHHHHcCCcC
Confidence 57788999999999998887554211 22234555421 2 4589999999999864
No 152
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.93 E-value=2.6e+02 Score=27.18 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCeEEeeeCceeecCCCchhHHHhhhcceEEecCCccceeeEecCcccccCCCCHHHHHHHHHHHHHHHh
Q 048354 186 KTFVDNLHKNGQKYVVIVDPGISTNETNDTFDRGMKADIYIKREGVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRN 265 (395)
Q Consensus 186 ~~mi~~L~~~G~k~~~~i~P~i~~~~~y~~~~e~~~~g~~v~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 265 (395)
++..++|.++|++++++- .+. +..+. .++.+- +... ..+ ....+||++++. -.+.+++.++
T Consensus 63 KayA~eLAkrG~nvvLIs-----Rt~--~KL~~-v~kEI~--~~~~---vev---~~i~~Dft~~~~---~ye~i~~~l~ 123 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLIS-----RTQ--EKLEA-VAKEIE--EKYK---VEV---RIIAIDFTKGDE---VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHHHcCCEEEEEe-----CCH--HHHHH-HHHHHH--HHhC---cEE---EEEEEecCCCch---hHHHHHHHhc
Confidence 889999999999987752 221 11111 111010 0000 111 357789999986 2233444333
Q ss_pred cCC-----CCCCCCCCCCCccccCCCCcccccCCCccc--cccchH-HHHHHHHHHHHHHhcCCCcEEEEcccccCCCcc
Q 048354 266 TLA-----SRPVFYFDDPPYKISNGGGGKQINDRTFPA--SHNLYG-LLEAKATHAALINVTGKRPFILSRSTFVSSGKY 337 (395)
Q Consensus 266 ~~~-----~~d~~~~~~~~~~~~~~~~~~~~~~~t~~~--~hN~Y~-~~~~~a~~e~~~~~~~~rp~~~sRS~~~Gsqry 337 (395)
.+. -+-+.-.+.|++.... ..+.+.. --|+.+ .++++.+--.|.+ .++..|+.-++++|.++-
T Consensus 124 ~~~VgILVNNvG~~~~~P~~f~~~-------~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS~ag~~p~ 194 (312)
T KOG1014|consen 124 GLDVGILVNNVGMSYDYPESFLKY-------PEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGSFAGLIPT 194 (312)
T ss_pred CCceEEEEecccccCCCcHHHHhC-------chhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEeccccccccC
Confidence 322 1111222334443221 1111111 123332 3455555555543 578899999999998766
Q ss_pred c
Q 048354 338 A 338 (395)
Q Consensus 338 ~ 338 (395)
+
T Consensus 195 p 195 (312)
T KOG1014|consen 195 P 195 (312)
T ss_pred h
Confidence 5
No 153
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=24.71 E-value=2e+02 Score=25.11 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCC-----CCc---hHHHHHHHHHhcCCeEEee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINF-----PVD---PMKTFVDNLHKNGQKYVVI 202 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~F-----Pdp---~~~~mi~~L~~~G~k~~~~ 202 (395)
+.++.++.++.+++.||- .+++- | .+++...+-+..+ ..| -++.+++.-.+.|+||.+-
T Consensus 18 ~~~~W~~~~~~m~~~Gid--tlIlq--~-~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~G 84 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGID--TLILQ--W-TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVG 84 (166)
T ss_pred CHHHHHHHHHHHHHcCCc--EEEEE--E-eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEe
Confidence 788999999999999984 44433 1 2223233323322 111 2566666677778887653
No 154
>PRK08392 hypothetical protein; Provisional
Probab=24.27 E-value=2.2e+02 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCeEEeeeCceee
Q 048354 187 TFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 187 ~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
.+++..++.|.++++.-+.+..
T Consensus 165 ~~l~~~~~~G~~~~igSDAH~~ 186 (215)
T PRK08392 165 EFIRECIKRGIKLTFASDAHRP 186 (215)
T ss_pred HHHHHHHHcCCEEEEeCCCCCh
Confidence 4556666666666555555543
No 155
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.09 E-value=63 Score=27.88 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=33.5
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
+..-+++..+.+++.|||+|.-++- ..|=|+ .+.+++++++++|.++++.+
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~s-------------aHR~p~-~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVAS-------------AHRTPE-RLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE---------------TTTSHH-HHHHHHHHTTTTTESEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEe-------------ccCCHH-HHHHHHHHhccCCCEEEEEE
Confidence 4556778888888899999986553 233343 46777777777888866543
No 156
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=23.72 E-value=82 Score=26.44 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCeEEeeeCce
Q 048354 184 PMKTFVDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 184 ~~~~mi~~L~~~G~k~~~~i~P~ 206 (395)
|++-|++.+++.|+++++++-|.
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~Pv 59 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPV 59 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE---
T ss_pred HHHHHHHHHHHcCCceEEEecCC
Confidence 67899999999999999988665
No 157
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=23.59 E-value=4.5e+02 Score=27.19 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=67.9
Q ss_pred CChHHHHHHHhhcccCCCCceEEEEeccccCC----c--cceE-eCCCCCCCchHHHHHHHHHhcCCeEEeee-Cceeec
Q 048354 138 KNVSYLEGVVAGYANASIPLEVMWTDIDYMDA----Y--KDFT-LDPINFPVDPMKTFVDNLHKNGQKYVVIV-DPGIST 209 (395)
Q Consensus 138 ~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~----~--~~f~-~d~~~FPdp~~~~mi~~L~~~G~k~~~~i-~P~i~~ 209 (395)
.+-.++..+++++-+.+ +++|||-+-+-.. | .||. .|+ +|- +++++.+-.++ +|+|+=+ --+++.
T Consensus 14 ~glgdl~g~l~~yL~~~--v~~i~LlPffps~sD~GYdv~DY~~VDP-~~G--t~~Df~~L~~~--~kvmlDlV~NHtS~ 86 (470)
T TIGR03852 14 KNLKELNKVLENYFKDA--VGGVHLLPFFPSTGDRGFAPMDYTEVDP-AFG--DWSDVEALSEK--YYLMFDFMINHISR 86 (470)
T ss_pred CChhhHHHHHHHHHHHh--CCEEEECCCCcCCCCCCcCchhhceeCc-ccC--CHHHHHHHHHh--hhHHhhhccccccc
Confidence 35667888888777664 8999999877533 1 1222 444 444 22333222222 5666522 222333
Q ss_pred CCCchhHHHhhh-------cceEEecC-----C----------------cccee---------eEec---CcccccCCCC
Q 048354 210 NETNDTFDRGMK-------ADIYIKRE-----G----------------VPYKG---------KVWA---GDVYFPDFLN 249 (395)
Q Consensus 210 ~~~y~~~~e~~~-------~g~~v~~~-----g----------------~~~~~---------~~w~---g~~~~~Dftn 249 (395)
. .+-|+++.+ +++|+..+ + .++.. .+|. ....=+||.|
T Consensus 87 ~--h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~n 164 (470)
T TIGR03852 87 Q--SEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTS 164 (470)
T ss_pred c--hHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCC
Confidence 2 366776543 36777210 0 01111 1221 1233467999
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 048354 250 PAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 250 p~a~~ww~~~~~~~~~~~~ 268 (395)
|++++...+.++.+++.|+
T Consensus 165 p~v~e~i~~il~fwl~~Gv 183 (470)
T TIGR03852 165 ETTKRFIRDNLENLAEHGA 183 (470)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999998888888777
No 158
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=23.57 E-value=1.9e+02 Score=25.79 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=41.1
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhc---CCeEEeeeCce
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKN---GQKYVVIVDPG 206 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~---G~k~~~~i~P~ 206 (395)
.+.+.+.+.+-+..|.++.+|-||.|..+. +-+ ++.++++.||++ ++++.+..=|.
T Consensus 26 ~~~i~~~l~~W~~~G~~v~giQIDfDa~t~---------~L~--~Y~~fL~~LR~~LP~~~~LSIT~L~d 84 (181)
T PF11340_consen 26 LARILQLLQRWQAAGNNVAGIQIDFDAATS---------RLP--AYAQFLQQLRQRLPPDYRLSITALPD 84 (181)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecCcccc---------chH--HHHHHHHHHHHhCCCCceEeeEEehh
Confidence 445666777888999999999999877644 333 678999999984 67776544333
No 159
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=23.48 E-value=2.6e+02 Score=19.71 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=38.3
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHh-cCCeEEee
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHK-NGQKYVVI 202 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~-~G~k~~~~ 202 (395)
...+.++.+-+.++|+.+..+.....-.++.....+.-+. |.| +++++.|++ .|++-+..
T Consensus 10 ~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~-~~~--~~~~~~l~~~~~v~~v~~ 70 (73)
T cd04902 10 PGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE-PVP--DEVLEELRALPGILSAKV 70 (73)
T ss_pred CCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC-CCC--HHHHHHHHcCCCccEEEE
Confidence 3456778888899999998776543222333334443333 555 789999998 57765543
No 160
>PTZ00445 p36-lilke protein; Provisional
Probab=23.34 E-value=1.3e+02 Score=27.53 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=39.4
Q ss_pred hHHHHHHHhhcccCCCCceEEEEecccc------CCccceEeCCCC---CCCchHHHHHHHHHhcCCeEEeee
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYM------DAYKDFTLDPIN---FPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~------~~~~~f~~d~~~---FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
.+.....++.+++.||-+ |.+|.|-+ .++.+-+-|... -..|+++.++++|++.|+++++..
T Consensus 28 ~~~~~~~v~~L~~~GIk~--Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVT 98 (219)
T PTZ00445 28 HESADKFVDLLNECGIKV--IASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVT 98 (219)
T ss_pred HHHHHHHHHHHHHcCCeE--EEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEE
Confidence 445677899999999965 66665543 122111101111 123578999999999999997654
No 161
>PRK10904 DNA adenine methylase; Provisional
Probab=23.21 E-value=1.7e+02 Score=27.71 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=31.1
Q ss_pred CceEEEEeccccCC--ccce-EeCCCCCCCc---hHHHHHHHHHhcCCeEEeeeCc
Q 048354 156 PLEVMWTDIDYMDA--YKDF-TLDPINFPVD---PMKTFVDNLHKNGQKYVVIVDP 205 (395)
Q Consensus 156 P~d~i~lD~~~~~~--~~~f-~~d~~~FPdp---~~~~mi~~L~~~G~k~~~~i~P 205 (395)
+-|-|++||.|... ..+| .+...-|.+- .+.++++.|+..|.|++++.+.
T Consensus 174 ~~~fvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~La~~l~~l~~~~~k~ilS~~d 229 (271)
T PRK10904 174 KGSVVYCDPPYAPLSATANFTAYHTNSFSLEQQAHLAEIAEGLVERHIPVLISNHD 229 (271)
T ss_pred CCcEEEECCCCCCCCCCCCCcCcccCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 55679999999732 1123 2223345522 3456667777789999997753
No 162
>PLN02645 phosphoglycolate phosphatase
Probab=22.91 E-value=2.8e+02 Score=26.68 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=35.5
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeC
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVD 204 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 204 (395)
..+++.++++. .++|.+|+|= .+--+.+-|| +..+.++.|+++|+++++..+
T Consensus 17 ~~~~~~~~~~~-------~~~~~~D~DG-----tl~~~~~~~~--ga~e~l~~lr~~g~~~~~~TN 68 (311)
T PLN02645 17 TLENADELIDS-------VETFIFDCDG-----VIWKGDKLIE--GVPETLDMLRSMGKKLVFVTN 68 (311)
T ss_pred CHHHHHHHHHh-------CCEEEEeCcC-----CeEeCCccCc--CHHHHHHHHHHCCCEEEEEeC
Confidence 45566776664 4688888642 2222234577 459999999999999987664
No 163
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.87 E-value=9.8e+02 Score=25.81 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=50.4
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccC---CccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCc
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMD---AYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDP 205 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P 205 (395)
..|..|- +.+...+.+++.++.|+ ++|-.-..|-. ..+.+.|. .++ |+.++|+..|+.|.-+++=+-|
T Consensus 40 sIHY~R~---~pe~W~~~i~k~k~~Gl--n~IqtYVfWn~Hep~~g~y~Fs-G~~---DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 40 SIHYPRS---TPEMWPDLIKKAKAGGL--NVIQTYVFWNLHEPSPGKYDFS-GRY---DLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred ccccccC---ChhhhHHHHHHHHhcCC--ceeeeeeecccccCCCCccccc-chh---HHHHHHHHHHHCCeEEEecCCC
Confidence 3455554 67778888888888876 44544444431 12222222 222 7899999999999999999999
Q ss_pred eeecC
Q 048354 206 GISTN 210 (395)
Q Consensus 206 ~i~~~ 210 (395)
+|..+
T Consensus 111 yIcaE 115 (649)
T KOG0496|consen 111 YICAE 115 (649)
T ss_pred eEEec
Confidence 99976
No 164
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=22.78 E-value=1.5e+02 Score=27.44 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 141 SYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 141 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
+.+.+.+++.| =++|.+++-.-|-.. -+.+|.|..+++.+.|-+.|.-+++--.|++...
T Consensus 171 ~~i~~~i~~~r---~~~D~vIv~~HwG~e-------~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~ 230 (250)
T PF09587_consen 171 ERIKEDIREAR---KKADVVIVSLHWGIE-------YENYPTPEQRELARALIDAGADIIIGHHPHVIQP 230 (250)
T ss_pred HHHHHHHHHHh---cCCCEEEEEeccCCC-------CCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccc
Confidence 55666666666 378888887777433 2466777889999999999999999999998765
No 165
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.55 E-value=3.1e+02 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=46.0
Q ss_pred ccccccCCCCChHHHHHHHhhcccCCCCceEEEEeccccCCcc--ceEeCCCCCCCchHHHHHHHHHh--cCCeEEeeeC
Q 048354 129 GFHQCRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYMDAYK--DFTLDPINFPVDPMKTFVDNLHK--NGQKYVVIVD 204 (395)
Q Consensus 129 G~~qsr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~--~f~~d~~~FPdp~~~~mi~~L~~--~G~k~~~~i~ 204 (395)
|.|..++.+ +.+++.++++.+.+.|++.==+ .+-++.+ .|......+|+ .+.++.+.+ .+.|+...+.
T Consensus 13 G~q~~~~~f-~~~~~~~ia~~Ld~aGV~~IEv----g~g~gl~g~s~~~G~~~~~~---~e~i~~~~~~~~~~~~~~ll~ 84 (333)
T TIGR03217 13 GMHAIRHQF-TIEQVRAIAAALDEAGVDAIEV----THGDGLGGSSFNYGFSAHTD---LEYIEAAADVVKRAKVAVLLL 84 (333)
T ss_pred CCcCCCCcC-CHHHHHHHHHHHHHcCCCEEEE----ecCCCCCCccccCCCCCCCh---HHHHHHHHHhCCCCEEEEEec
Confidence 676666666 7889999999999999874222 2323322 45444556663 345555544 3578887888
Q ss_pred ceee
Q 048354 205 PGIS 208 (395)
Q Consensus 205 P~i~ 208 (395)
|.+.
T Consensus 85 pg~~ 88 (333)
T TIGR03217 85 PGIG 88 (333)
T ss_pred cCcc
Confidence 8654
No 166
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=22.55 E-value=78 Score=25.89 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=36.5
Q ss_pred HHHHhhcccCCCCceEEEEeccccCC----ccceE---eCCCCCCCch---HHHHHHHHHhcCCe
Q 048354 144 EGVVAGYANASIPLEVMWTDIDYMDA----YKDFT---LDPINFPVDP---MKTFVDNLHKNGQK 198 (395)
Q Consensus 144 ~~~~~~~r~~~iP~d~i~lD~~~~~~----~~~f~---~d~~~FPdp~---~~~mi~~L~~~G~k 198 (395)
+.+++++.++|.-.+.-|.|+.|... +.+.. +..--||+.+ +.+-++.|+++|+.
T Consensus 55 ~lv~~EM~~RGY~~~~~W~d~~yRG~~~~~y~~l~~~~~~~PiY~eHd~~Yl~eCl~NL~~KgI~ 119 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQWLDPNYRGQNCPNYDLLEEIKLTTPIYPEHNDDYLNECLANLRAKGII 119 (120)
T ss_pred HHHHHHHHHcCCCCChhhcCccccCCcCCcccccchhhcCCCCChhhhHHHHHHHHHHHHHcCcc
Confidence 56789999999999999999998754 22111 2222344332 45566777777764
No 167
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.45 E-value=1.9e+02 Score=27.22 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=40.9
Q ss_pred ChHHHHHHHhhcccC--CCCceEEE-EeccccCC------------ccceEeCCCCCCCchHHHHHHHHHhcCCeEEeee
Q 048354 139 NVSYLEGVVAGYANA--SIPLEVMW-TDIDYMDA------------YKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~--~iP~d~i~-lD~~~~~~------------~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
+.+++.++++++|+. ++|++.+. .++-+.-+ -....+...-+. ...++++.+|++|++.++.+
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~e--e~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLE--ESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChH--HHHHHHHHHHHCCCcEEEEE
Confidence 678899999999965 89987532 22211111 011112111122 34777788888888888777
Q ss_pred Cceeec
Q 048354 204 DPGIST 209 (395)
Q Consensus 204 ~P~i~~ 209 (395)
.|.-..
T Consensus 148 ~P~T~~ 153 (256)
T TIGR00262 148 APNADD 153 (256)
T ss_pred CCCCCH
Confidence 776543
No 168
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=22.41 E-value=93 Score=27.03 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=18.8
Q ss_pred CCCCchHHHHHHHHHhcCCeEEeee
Q 048354 179 NFPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 179 ~FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
-|| +..++++.||++|+++.+..
T Consensus 27 ~~p--gv~e~L~~Lk~~G~~l~i~T 49 (176)
T TIGR00213 27 FID--GVIDALRELKKMGYALVLVT 49 (176)
T ss_pred ECC--CHHHHHHHHHHCCCEEEEEe
Confidence 355 67999999999999987643
No 169
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.40 E-value=2.1e+02 Score=27.66 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=42.0
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceee
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGIS 208 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~ 208 (395)
....|.+++..-++.+--+.+++.+ .+|.-.-..|++.|++.|+.++++++-.+.
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtE---------------SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~ 182 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTE---------------SRPRGEGRIMAKELRQSGIPVTVIVDSAVG 182 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEc---------------CCCcchHHHHHHHHHHcCCceEEEechHHH
Confidence 3556777777777777778888886 344434488999999999999999987764
No 170
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=22.35 E-value=1.8e+02 Score=27.33 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=28.1
Q ss_pred eEEEEeccccCCc--cceE-eCCCCCCCc---hHHHHHHHHHhcCCeEEeeeC
Q 048354 158 EVMWTDIDYMDAY--KDFT-LDPINFPVD---PMKTFVDNLHKNGQKYVVIVD 204 (395)
Q Consensus 158 d~i~lD~~~~~~~--~~f~-~d~~~FPdp---~~~~mi~~L~~~G~k~~~~i~ 204 (395)
|.|++||.|.... ..|+ +....|.+- ++.++++.|+.+|.+++++.+
T Consensus 174 dfvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~L~~~l~~l~~~~~~~~lS~~ 226 (266)
T TIGR00571 174 SFVYCDPPYLPLSATYNFTGYHTNGFDEDEQKRLANFCKSLDERGIKFLLSNS 226 (266)
T ss_pred CEEEECCCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4799999997421 1232 223455532 344555555557999998775
No 171
>PLN02161 beta-amylase
Probab=22.20 E-value=1.8e+02 Score=30.28 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=52.2
Q ss_pred cCeEEEEEEecccc------ccCCCCChHHHHHHHhhcccCCCCceEEEEecccc--C--CccceEeCCCCCCCchHHHH
Q 048354 119 GGIIDLYFFAGFHQ------CRYGYKNVSYLEGVVAGYANASIPLEVMWTDIDYM--D--AYKDFTLDPINFPVDPMKTF 188 (395)
Q Consensus 119 ~g~ld~y~~~G~~q------sr~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~~m 188 (395)
...+.+||++=.-. ..-...+.+.+..-++.++..| +|+|.+|.-|- + +-+.|.|. ..+++
T Consensus 89 ~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~G--VdGVmvDVWWGiVE~~~p~~YdWs-------gY~~l 159 (531)
T PLN02161 89 HKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAG--VHGIAVEVWWGIVERFSPLEFKWS-------LYEEL 159 (531)
T ss_pred CCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcC--CCEEEEEeeeeeeecCCCCcCCcH-------HHHHH
Confidence 34688888881111 1123456777777777777654 58899996553 2 22344444 78999
Q ss_pred HHHHHhcCCeEEeeeCce
Q 048354 189 VDNLHKNGQKYVVIVDPG 206 (395)
Q Consensus 189 i~~L~~~G~k~~~~i~P~ 206 (395)
++-+++.|+|+.+++.=+
T Consensus 160 ~~mvr~~GLKlq~vmSFH 177 (531)
T PLN02161 160 FRLISEAGLKLHVALCFH 177 (531)
T ss_pred HHHHHHcCCeEEEEEEec
Confidence 999999999997776444
No 172
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=22.07 E-value=1.2e+02 Score=26.67 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCCeE
Q 048354 186 KTFVDNLHKNGQKY 199 (395)
Q Consensus 186 ~~mi~~L~~~G~k~ 199 (395)
.+.++.|++.|+++
T Consensus 143 ~~~i~~l~~~gi~~ 156 (191)
T TIGR02495 143 LKSLEILLRSGIPF 156 (191)
T ss_pred HHHHHHHHHcCCCE
Confidence 44455555555543
No 173
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.05 E-value=86 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.0
Q ss_pred ceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 172 DFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 172 ~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
-||+.-+.=.+| .++++++|++|.|+.+.++|.-..+
T Consensus 90 ~~tfH~E~~q~~--~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 90 LFTFHYEATQKP--AELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred eEEEEEeeccCH--HHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 455554444434 9999999999999999999998765
No 174
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=21.98 E-value=97 Score=26.78 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHhcCCeEEeeeC
Q 048354 180 FPVDPMKTFVDNLHKNGQKYVVIVD 204 (395)
Q Consensus 180 FPdp~~~~mi~~L~~~G~k~~~~i~ 204 (395)
|| +..++++.|+++|+++++..+
T Consensus 31 ~p--gv~e~L~~L~~~g~~l~IvSN 53 (161)
T TIGR01261 31 EK--GVIPALLKLKKAGYKFVMVTN 53 (161)
T ss_pred CC--CHHHHHHHHHHCCCeEEEEeC
Confidence 55 679999999999999876543
No 175
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=21.97 E-value=57 Score=30.25 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=39.5
Q ss_pred HHHHHHhhcccCCCCceEEEEec-cccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCc
Q 048354 142 YLEGVVAGYANASIPLEVMWTDI-DYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDP 205 (395)
Q Consensus 142 ~v~~~~~~~r~~~iP~d~i~lD~-~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P 205 (395)
.+.+.++.+++.|+-+==|.+.+ .+......+.++...+. .++++++.++++|++|++-++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~--~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLA--RLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHH--HHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHH--HHHHHHHHHHhCCCeEEEEecc
Confidence 66777888888887765555553 22222223334444444 6799999999999999775544
No 176
>PRK13663 hypothetical protein; Provisional
Probab=21.94 E-value=1.2e+02 Score=30.60 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=38.2
Q ss_pred hHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEe
Q 048354 140 VSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVV 201 (395)
Q Consensus 140 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~ 201 (395)
.++|+.+++.||+.|+=+.++++- .| +.+ | .-..+.++|..+|+|+-.
T Consensus 91 d~dVLRLiD~fr~~gl~V~sVVIT-qy---------~~q--p--~a~~F~~rLe~~GIkvy~ 138 (493)
T PRK13663 91 DQDVLRLIDDFRELGLYVGSVVIT-QY---------DGQ--P--AADAFRNRLERLGIKVYR 138 (493)
T ss_pred hHHHHHHHHHHHhcCceeeeEEEE-ec---------CCC--h--HHHHHHHHHHHCCCceEE
Confidence 678999999999999999999985 22 211 2 347899999999999754
No 177
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=21.88 E-value=91 Score=27.26 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=24.2
Q ss_pred CCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 179 NFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 179 ~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
++.+..++++++.||+.|++.++.++-.....
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~ 47 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGF 47 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCc
Confidence 34433689999999999999998886655443
No 178
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=20.95 E-value=71 Score=29.30 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=21.7
Q ss_pred EeCCCCCCCchHHHHHHHHHhcCCeEEeee
Q 048354 174 TLDPINFPVDPMKTFVDNLHKNGQKYVVIV 203 (395)
Q Consensus 174 ~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 203 (395)
.....-|| ++.++++.||++|+++.+.-
T Consensus 91 ~~~~~lyp--gv~e~L~~Lk~~G~~l~I~S 118 (220)
T TIGR01691 91 ELTSHLYP--DVPPALEAWLQLGLRLAVYS 118 (220)
T ss_pred CcccCcCc--CHHHHHHHHHHCCCEEEEEe
Confidence 44456788 56999999999999987643
No 179
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=20.73 E-value=1.9e+02 Score=24.35 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=34.6
Q ss_pred ccccccCCCC---ChHHHHHHHhhcccCCCCc-eEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEe
Q 048354 129 GFHQCRYGYK---NVSYLEGVVAGYANASIPL-EVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVV 201 (395)
Q Consensus 129 G~~qsr~~y~---~~~~v~~~~~~~r~~~iP~-d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~ 201 (395)
+...+.|... ..++-++-+...++.|+|- .+|+.|.|+-- .+-.++..--| =++...+.|+..|+|+-+
T Consensus 62 ~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p~gt~IYfavD~d~--~~~~~~~~i~~--Y~~g~~~~l~~~gY~~Gv 134 (136)
T PF08924_consen 62 GRETSDFTYGYAQGVADARDAVAAARALGFPAGTPIYFAVDYDA--TDAECDSAILP--YFRGWNSALGASGYRPGV 134 (136)
T ss_dssp -----S-B--HHHHHHHHHHHHHHHHHTT--SS-EEEEE--TS---B-HH---------HHHHHHHHHGGGT-EEEE
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeecCC--CchhhhhHHHH--HHHHHHHHHhhCCCccee
Confidence 3344444443 3567778888899999998 66999998432 22233333333 468889999999988765
No 180
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.45 E-value=81 Score=25.03 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=23.5
Q ss_pred CCChHHHHHHHhhcccCCCCceEEEE
Q 048354 137 YKNVSYLEGVVAGYANASIPLEVMWT 162 (395)
Q Consensus 137 y~~~~~v~~~~~~~r~~~iP~d~i~l 162 (395)
|.|++++.+.++++++.|+.-|-|++
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~V 31 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYV 31 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEE
Confidence 67899999999999999999888766
No 181
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=20.36 E-value=2.8e+02 Score=28.40 Aligned_cols=60 Identities=8% Similarity=0.119 Sum_probs=39.4
Q ss_pred ChHHHHHHHhhcccCC-CCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecC
Q 048354 139 NVSYLEGVVAGYANAS-IPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTN 210 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~-iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~ 210 (395)
+.++++++++++|+.. +|+-+|.+ ..+ .-| -++ |+-++++..++.|++-|-+-.-+|...
T Consensus 92 t~eqi~~Ml~~lk~e~p~~~~aIq~----tGG--EPT-----vr~-DL~eiv~~a~e~g~~hVqinTnGirlA 152 (475)
T COG1964 92 TLEQIREMLRNLKKEHPVGANAVQF----TGG--EPT-----LRD-DLIEIIKIAREEGYDHVQLNTNGIRLA 152 (475)
T ss_pred CHHHHHHHHHHHHhcCCCCCceeEe----cCC--Ccc-----chh-hHHHHHHHHhhcCccEEEEccCceeec
Confidence 8999999999999987 88888744 222 112 222 567777777777775444444455443
No 182
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.17 E-value=2e+02 Score=26.88 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=66.9
Q ss_pred ChHHHHHHHhhcccCCCCceEEEEeccccCCccceEeCCCCCCCchHHHHHHHHHhcCCeEEeeeCceeecCC--CchhH
Q 048354 139 NVSYLEGVVAGYANASIPLEVMWTDIDYMDAYKDFTLDPINFPVDPMKTFVDNLHKNGQKYVVIVDPGISTNE--TNDTF 216 (395)
Q Consensus 139 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~i~~~~--~y~~~ 216 (395)
..+.+++.++.++++||++-. . ++.-.. .+-+. .++++++.+|+.|+..+=+-+=.+.... ....-
T Consensus 39 ~~~~l~eki~la~~~~V~v~~---G-Gtl~E~---~~~q~-----~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI 106 (237)
T TIGR03849 39 DRDIVKEKIEMYKDYGIKVYP---G-GTLFEI---AHSKG-----KFDEYLNECDELGFEAVEISDGSMEISLEERCNLI 106 (237)
T ss_pred cHHHHHHHHHHHHHcCCeEeC---C-ccHHHH---HHHhh-----hHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHH
Confidence 567899999999999998633 1 111000 11122 4688999999999998866666665542 11234
Q ss_pred HHhhhcceEEecC-CccceeeEecCcccccCCCCHHHHHHHHHHHHHHHhcCC
Q 048354 217 DRGMKADIYIKRE-GVPYKGKVWAGDVYFPDFLNPAIETFWEGEIKLFRNTLA 268 (395)
Q Consensus 217 ~e~~~~g~~v~~~-g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~ 268 (395)
+.+.+.|+-++.. |... +.. +. ....++|-++.++.++.|.
T Consensus 107 ~~~~~~g~~v~~EvG~K~-----~~~----~~--~~~~~~~i~~~~~~LeAGA 148 (237)
T TIGR03849 107 ERAKDNGFMVLSEVGKKS-----PEK----DS--ELTPDDRIKLINKDLEAGA 148 (237)
T ss_pred HHHHhCCCeEeccccccC-----Ccc----cc--cCCHHHHHHHHHHHHHCCC
Confidence 5677788888765 4321 110 11 2235688888888888776
Done!