BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048355
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 135
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 61/91 (67%)
Query: 8 FEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXKC 67
+ED LP+MA K+ + + ELC GF+LL D ++ +IT ESL++NS +
Sbjct: 22 YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81
Query: 68 MLKEGDFDCDGALNQMEFCVLMFRLSPELME 98
M++EGD D DGALNQ EFCVLM RLSPE+ME
Sbjct: 82 MVREGDLDGDGALNQTEFCVLMVRLSPEMME 112
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 7 NFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXK 66
+FE+ L +M K+G E+ F L D + G I+F++LK+ A +
Sbjct: 62 DFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKR-VAKELGENMTDEELQ 120
Query: 67 CMLKEGDFDCDGALNQMEFCVLMFRLS 93
M+ E D D DG +N+ EF +M + S
Sbjct: 121 EMIDEADRDGDGEVNEEEFFRIMKKTS 147
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 7 NFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXK 66
NF D L +M K+ E+ F L D + G I+F++LK+ A +
Sbjct: 2 NFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKR-VAKELGENLTDEELQ 60
Query: 67 CMLKEGDFDCDGALNQMEFCVLMFRLS 93
M+ E D D DG +++ EF +M + S
Sbjct: 61 EMIDEADRDGDGEVSEQEFLRIMKKTS 87
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 7 NFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXK 66
NF D L +M K+ E+ F L D + G I+F++LK+ A +
Sbjct: 60 NFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKR-VAKELGENLTDEELQ 118
Query: 67 CMLKEGDFDCDGALNQMEFCVLM 89
M+ E D D DG +++ EF +M
Sbjct: 119 EMIDEADRDGDGEVSEQEFLRIM 141
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 7 NFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXK 66
+FE+ L +M K+G E+ F L D + G IT + L++ A +
Sbjct: 82 DFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRR-VAKELGENLTEEELQ 140
Query: 67 CMLKEGDFDCDGALNQMEFCVLMFRLS 93
M+ E D + D +++ EF +M + S
Sbjct: 141 EMIAEADRNDDNEIDEDEFIRIMKKTS 167
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 FEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXKC 67
++D +M K+ + E+ F L D G I+ ++L++ A +
Sbjct: 78 YDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRR-VAKELGETLTDEELRA 136
Query: 68 MLKEGDFDCDGALNQMEFCVL 88
M++E D D DG +N+ EF +
Sbjct: 137 MIEEFDLDGDGEINENEFIAI 157
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain
(T94-Y172) Of The Human Centrin 2 In Complex With A
Repeat Sequence Of Human Sfi1 (R641-T660)
Length = 79
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 27 ELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXKCMLKEGDFDCDGALNQMEFC 86
E+ F L D + G I+F++LK+ A + M+ E D D DG +++ EF
Sbjct: 12 EILKAFKLFDDDETGKISFKNLKR-VAKELGENLTDEELQEMIDEADRDGDGEVSEQEFL 70
Query: 87 VLMFRLS 93
+M + S
Sbjct: 71 RIMKKTS 77
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 7 NFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXK 66
NF D L + K E+ F L D + G I+F++LK+ A +
Sbjct: 85 NFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKR-VAKELGENLTDEELQ 143
Query: 67 CMLKEGDFDCDGALNQMEFCVLMFRLS 93
+ E D D DG +++ EF + + S
Sbjct: 144 EXIDEADRDGDGEVSEQEFLRIXKKTS 170
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 8 FEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAXXXXXXXXXXXXKC 67
F++ L LMA K+ EL F + G I+ L+ + +
Sbjct: 65 FDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELR-HVMINLGEKLTDEEVEQ 123
Query: 68 MLKEGDFDCDGALNQMEFCVLMFRL 92
M+KE D D DG +N EF +M +
Sbjct: 124 MIKEADLDGDGQVNYEEFVKMMMTV 148
>pdb|2SCP|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|2SCP|B Chain B, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|1Q80|A Chain A, Solution Structure And Dynamics Of Nereis Sarcoplasmic
Calcium Binding Protein
Length = 174
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 66 KCMLKEGDFDCDGALNQMEFCVLMFRLSPEL-MEASSNLMLLFQFTDISQRPLLSGKVWE 124
K DFD DGA+ +M+F + R + E M+A +L+ T VW+
Sbjct: 9 KTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLT----------GVWD 58
Query: 125 KLDTG-AGGKEQKSLTLYIRTTFMCKSPAIEE------DLFILSIILDKTGNNSRTDQG 176
T AGGK T M K+P + LF ++ ++ N SR + G
Sbjct: 59 NFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYG 117
>pdb|2OWY|A Chain A, The Recombination-Associated Protein Rdgc Adopts A Novel
Toroidal Architecture For Dna Binding
pdb|2OWY|B Chain B, The Recombination-Associated Protein Rdgc Adopts A Novel
Toroidal Architecture For Dna Binding
Length = 306
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1 MAAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLM 36
+A FED L A K GG+ +G+L F L+M
Sbjct: 248 LAVKRLRFEDLLQEQAEKDGGEDALGQLDASFTLMM 283
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 68 MLKEGDFDCDGALNQMEFCVLM 89
M++E D D DG +N EF +M
Sbjct: 124 MIREADIDGDGQVNYEEFVTMM 145
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 68 MLKEGDFDCDGALNQMEFCVLM 89
M++E D D DG +N EF +M
Sbjct: 124 MIREADIDGDGQVNYEEFVTMM 145
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 68 MLKEGDFDCDGALNQMEFCVLM 89
M++E D D DG +N EF +M
Sbjct: 125 MIREADIDGDGQVNYEEFVTMM 146
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 68 MLKEGDFDCDGALNQMEFCVLM 89
M++E D D DG +N EF +M
Sbjct: 125 MIREADIDGDGQVNYEEFVTMM 146
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 68 MLKEGDFDCDGALNQMEFCVLM 89
M++E D D DG +N EF +M
Sbjct: 125 MIRESDIDGDGQVNYEEFVTMM 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,586,086
Number of Sequences: 62578
Number of extensions: 252833
Number of successful extensions: 610
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 21
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)