Query 048355
Match_columns 243
No_of_seqs 318 out of 2578
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 1.1E-18 2.5E-23 125.8 10.5 89 3-92 69-157 (160)
2 KOG0027 Calmodulin and related 99.7 7.5E-17 1.6E-21 118.4 9.4 88 3-91 58-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.7 3.4E-16 7.4E-21 110.5 9.5 88 3-91 83-170 (172)
4 KOG0031 Myosin regulatory ligh 99.6 1.6E-14 3.5E-19 101.4 10.4 91 2-93 77-167 (171)
5 cd05022 S-100A13 S-100A13: S-1 99.5 2.4E-14 5.2E-19 94.4 7.6 70 24-94 6-78 (89)
6 COG5126 FRQ1 Ca2+-binding prot 99.5 7.6E-14 1.7E-18 100.9 9.2 96 22-120 16-111 (160)
7 PTZ00183 centrin; Provisional 99.5 4.4E-13 9.6E-18 99.1 10.7 88 3-91 67-154 (158)
8 KOG0027 Calmodulin and related 99.5 4.1E-13 8.9E-18 98.5 10.0 98 22-120 4-104 (151)
9 PF13499 EF-hand_7: EF-hand do 99.5 2.5E-13 5.3E-18 85.3 7.5 62 27-89 1-66 (66)
10 cd05027 S-100B S-100B: S-100B 99.5 3.8E-13 8.2E-18 88.8 8.6 69 24-93 6-81 (88)
11 KOG0034 Ca2+/calmodulin-depend 99.5 6.9E-13 1.5E-17 99.2 10.5 89 3-92 80-176 (187)
12 PTZ00184 calmodulin; Provision 99.5 1.1E-12 2.4E-17 95.9 11.0 87 3-90 61-147 (149)
13 KOG0030 Myosin essential light 99.5 4.9E-13 1.1E-17 92.4 8.3 86 3-90 63-150 (152)
14 cd05026 S-100Z S-100Z: S-100Z 99.4 4.3E-12 9.4E-17 84.9 8.5 69 24-93 8-83 (93)
15 cd05029 S-100A6 S-100A6: S-100 99.4 6.1E-12 1.3E-16 83.1 8.4 71 23-94 7-82 (88)
16 cd05025 S-100A1 S-100A1: S-100 99.4 5.9E-12 1.3E-16 84.3 8.5 70 24-93 7-82 (92)
17 cd05031 S-100A10_like S-100A10 99.3 7.3E-12 1.6E-16 84.2 8.1 69 24-93 6-81 (94)
18 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1E-11 2.2E-16 93.0 8.4 88 3-91 78-175 (193)
19 smart00027 EH Eps15 homology d 99.3 1.4E-11 2.9E-16 83.3 7.9 68 22-92 6-73 (96)
20 KOG0037 Ca2+-binding protein, 99.3 8.1E-11 1.8E-15 88.0 10.6 100 2-117 107-206 (221)
21 cd00213 S-100 S-100: S-100 dom 99.2 2.6E-11 5.6E-16 80.6 6.8 69 23-92 5-80 (88)
22 cd00052 EH Eps15 homology doma 99.2 3.2E-11 6.9E-16 75.8 6.9 61 29-92 2-62 (67)
23 cd05023 S-100A11 S-100A11: S-1 99.2 8.4E-11 1.8E-15 77.7 8.6 70 23-93 6-82 (89)
24 KOG0031 Myosin regulatory ligh 99.2 1.4E-10 3E-15 81.8 8.8 92 22-119 28-119 (171)
25 PF13833 EF-hand_8: EF-hand do 99.2 1.2E-10 2.5E-15 69.9 6.8 52 39-91 1-53 (54)
26 KOG0028 Ca2+-binding protein ( 99.2 1.8E-10 3.8E-15 81.9 8.4 94 24-119 31-124 (172)
27 KOG0038 Ca2+-binding kinase in 99.2 1.8E-10 4E-15 80.4 7.5 91 3-93 85-179 (189)
28 PTZ00183 centrin; Provisional 99.2 3.2E-10 6.9E-15 83.7 9.5 96 22-119 13-108 (158)
29 KOG0030 Myosin essential light 99.1 2.5E-10 5.4E-15 79.2 7.8 99 21-120 6-107 (152)
30 PTZ00184 calmodulin; Provision 99.1 5.5E-10 1.2E-14 81.5 9.5 95 23-119 8-102 (149)
31 KOG0036 Predicted mitochondria 99.1 3.1E-10 6.7E-15 92.2 8.5 106 3-115 65-170 (463)
32 KOG0041 Predicted Ca2+-binding 99.1 5.2E-10 1.1E-14 82.3 7.7 71 23-94 96-166 (244)
33 PF14658 EF-hand_9: EF-hand do 99.1 9.2E-10 2E-14 67.1 6.8 61 30-91 2-64 (66)
34 cd00051 EFh EF-hand, calcium b 99.1 8.8E-10 1.9E-14 67.6 7.1 61 28-89 2-62 (63)
35 KOG0044 Ca2+ sensor (EF-Hand s 99.0 1.4E-09 3.1E-14 81.5 9.0 87 3-90 41-127 (193)
36 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.1E-09 2.3E-14 75.8 7.5 61 25-90 47-107 (116)
37 cd05030 calgranulins Calgranul 99.0 1.5E-09 3.3E-14 71.8 7.2 69 23-92 5-80 (88)
38 KOG1187 Serine/threonine prote 99.0 6.7E-10 1.4E-14 92.7 5.8 59 185-243 61-127 (361)
39 PLN02964 phosphatidylserine de 98.9 8.5E-09 1.8E-13 90.7 9.9 88 24-118 141-232 (644)
40 PF00036 EF-hand_1: EF hand; 98.8 1.8E-08 3.9E-13 51.6 4.0 29 27-55 1-29 (29)
41 cd05024 S-100A10 S-100A10: A s 98.7 1.5E-07 3.3E-12 61.6 8.4 70 23-94 5-79 (91)
42 PLN02964 phosphatidylserine de 98.7 9.9E-08 2.1E-12 84.1 9.6 64 27-91 180-243 (644)
43 KOG0037 Ca2+-binding protein, 98.7 2.1E-07 4.5E-12 70.0 9.1 88 25-120 56-143 (221)
44 PF13833 EF-hand_8: EF-hand do 98.6 3.4E-07 7.4E-12 54.6 6.4 52 2-54 1-53 (54)
45 PF13405 EF-hand_6: EF-hand do 98.5 1.6E-07 3.4E-12 49.2 4.1 30 27-56 1-31 (31)
46 PF00036 EF-hand_1: EF hand; 98.5 2.5E-07 5.4E-12 47.3 3.3 28 64-91 1-28 (29)
47 PF12763 EF-hand_4: Cytoskelet 98.4 1.7E-06 3.6E-11 58.7 8.0 66 22-91 6-71 (104)
48 KOG0377 Protein serine/threoni 98.4 8.4E-07 1.8E-11 73.2 7.6 91 2-92 512-616 (631)
49 KOG0036 Predicted mitochondria 98.4 2.2E-06 4.8E-11 70.3 8.8 88 25-120 13-101 (463)
50 KOG4223 Reticulocalbin, calume 98.3 1E-06 2.2E-11 70.1 5.5 85 2-87 213-301 (325)
51 PF13202 EF-hand_5: EF hand; P 98.2 2.2E-06 4.7E-11 42.2 3.5 25 28-52 1-25 (25)
52 PF14788 EF-hand_10: EF hand; 98.2 6.3E-06 1.4E-10 47.4 5.7 50 42-92 1-50 (51)
53 KOG0034 Ca2+/calmodulin-depend 98.1 3.2E-05 6.9E-10 58.2 9.6 90 25-120 32-123 (187)
54 KOG0040 Ca2+-binding actin-bun 98.1 1.3E-05 2.8E-10 75.0 8.1 93 25-119 2252-2351(2399)
55 PRK12309 transaldolase/EF-hand 98.1 1.3E-05 2.9E-10 67.2 7.3 56 22-91 330-385 (391)
56 PF13499 EF-hand_7: EF-hand do 98.1 6.7E-06 1.5E-10 51.1 4.3 51 2-52 13-66 (66)
57 KOG2643 Ca2+ binding protein, 98.0 3.7E-06 7.9E-11 69.5 3.0 93 2-97 212-320 (489)
58 KOG4666 Predicted phosphate ac 98.0 1.1E-05 2.4E-10 64.2 5.5 88 2-92 272-360 (412)
59 KOG0046 Ca2+-binding actin-bun 97.9 4.1E-05 8.9E-10 64.8 7.0 71 22-93 15-87 (627)
60 KOG4223 Reticulocalbin, calume 97.8 4.3E-05 9.3E-10 61.0 6.0 116 2-120 126-260 (325)
61 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.1E-05 2.4E-10 55.7 1.4 60 25-87 53-112 (113)
62 PF13202 EF-hand_5: EF hand; P 97.7 4.9E-05 1.1E-09 37.3 2.8 25 65-89 1-25 (25)
63 cd05022 S-100A13 S-100A13: S-1 97.7 0.00011 2.4E-09 48.4 5.3 55 2-56 22-77 (89)
64 KOG2562 Protein phosphatase 2 97.7 6.3E-05 1.4E-09 62.8 4.6 85 2-87 328-420 (493)
65 cd00051 EFh EF-hand, calcium b 97.6 0.00025 5.5E-09 42.7 6.2 50 2-52 13-62 (63)
66 cd05029 S-100A6 S-100A6: S-100 97.5 0.00039 8.5E-09 45.8 6.2 54 3-56 26-81 (88)
67 cd05030 calgranulins Calgranul 97.5 0.0003 6.4E-09 46.4 5.0 53 3-55 24-80 (88)
68 PF13405 EF-hand_6: EF-hand do 97.4 0.0002 4.3E-09 37.2 3.1 28 64-91 1-28 (31)
69 cd05026 S-100Z S-100Z: S-100Z 97.4 0.0007 1.5E-08 45.1 6.2 54 3-56 25-83 (93)
70 cd05027 S-100B S-100B: S-100B 97.3 0.00089 1.9E-08 44.1 6.1 53 3-55 23-80 (88)
71 cd05031 S-100A10_like S-100A10 97.3 0.00036 7.8E-09 46.7 4.1 54 3-56 24-81 (94)
72 KOG4065 Uncharacterized conser 97.3 0.00069 1.5E-08 45.8 5.2 59 30-88 71-142 (144)
73 PF14788 EF-hand_10: EF hand; 97.3 0.0013 2.8E-08 38.0 5.6 50 5-55 1-50 (51)
74 smart00054 EFh EF-hand, calciu 97.3 0.00044 9.4E-09 34.4 3.2 27 28-54 2-28 (29)
75 cd05023 S-100A11 S-100A11: S-1 97.3 0.0011 2.3E-08 43.8 5.7 53 4-56 26-82 (89)
76 cd00052 EH Eps15 homology doma 97.2 0.0014 3E-08 40.5 5.9 51 2-55 12-62 (67)
77 cd00213 S-100 S-100: S-100 dom 97.2 0.0012 2.5E-08 43.5 5.6 54 2-55 23-80 (88)
78 smart00027 EH Eps15 homology d 97.1 0.0021 4.6E-08 43.1 6.1 50 2-54 23-72 (96)
79 PLN00113 leucine-rich repeat r 97.1 0.0034 7.5E-08 59.6 9.8 35 189-226 683-726 (968)
80 KOG0751 Mitochondrial aspartat 97.0 0.0019 4.2E-08 54.7 6.4 107 2-120 87-198 (694)
81 KOG2562 Protein phosphatase 2 97.0 0.0019 4.1E-08 54.3 6.2 82 32-119 284-369 (493)
82 cd05025 S-100A1 S-100A1: S-100 97.0 0.0022 4.8E-08 42.6 5.4 54 3-56 24-82 (92)
83 KOG2643 Ca2+ binding protein, 96.9 0.001 2.3E-08 55.4 4.1 49 43-92 405-454 (489)
84 cd00252 SPARC_EC SPARC_EC; ext 96.9 0.0028 6E-08 44.0 5.6 46 2-52 61-106 (116)
85 PF09279 EF-hand_like: Phospho 96.9 0.0037 8.1E-08 40.6 5.6 65 27-93 1-71 (83)
86 KOG4251 Calcium binding protei 96.8 0.0011 2.5E-08 51.0 2.8 65 25-90 100-167 (362)
87 smart00054 EFh EF-hand, calciu 96.8 0.002 4.2E-08 31.9 2.9 28 64-91 1-28 (29)
88 cd05024 S-100A10 S-100A10: A s 96.7 0.0078 1.7E-07 39.6 6.1 54 3-56 21-78 (91)
89 KOG0377 Protein serine/threoni 96.4 0.021 4.4E-07 48.1 8.2 92 25-117 463-603 (631)
90 PF14658 EF-hand_9: EF-hand do 96.2 0.038 8.1E-07 33.9 6.4 52 3-54 12-64 (66)
91 KOG1955 Ral-GTPase effector RA 96.0 0.014 3.1E-07 49.6 5.4 66 23-91 228-293 (737)
92 KOG2243 Ca2+ release channel ( 95.9 0.012 2.7E-07 55.7 4.9 58 31-90 4062-4119(5019)
93 KOG0038 Ca2+-binding kinase in 95.7 0.043 9.3E-07 39.1 5.9 88 31-119 76-167 (189)
94 PF08726 EFhand_Ca_insen: Ca2+ 95.6 0.018 3.9E-07 35.8 3.3 56 23-87 3-65 (69)
95 KOG1029 Endocytic adaptor prot 95.5 0.023 5E-07 50.9 4.9 63 25-90 194-256 (1118)
96 KOG3653 Transforming growth fa 95.2 0.079 1.7E-06 45.3 6.8 33 205-240 216-255 (534)
97 PF05517 p25-alpha: p25-alpha 95.1 0.15 3.2E-06 37.4 7.4 65 29-93 2-71 (154)
98 KOG0042 Glycerol-3-phosphate d 95.1 0.048 1E-06 47.5 5.3 74 26-100 593-666 (680)
99 PF05042 Caleosin: Caleosin re 94.8 0.21 4.6E-06 36.8 7.3 67 25-92 6-125 (174)
100 PF12763 EF-hand_4: Cytoskelet 94.7 0.15 3.3E-06 34.6 6.0 49 3-54 23-71 (104)
101 KOG4347 GTPase-activating prot 94.5 0.072 1.6E-06 47.0 5.1 78 6-85 535-612 (671)
102 KOG4578 Uncharacterized conser 94.2 0.032 6.9E-07 45.1 2.2 62 27-91 334-398 (421)
103 KOG3555 Ca2+-binding proteogly 93.9 0.19 4.1E-06 41.1 6.0 63 25-92 249-311 (434)
104 PLN02952 phosphoinositide phos 93.9 0.61 1.3E-05 41.8 9.6 88 3-91 14-110 (599)
105 KOG0040 Ca2+-binding actin-bun 93.5 0.31 6.7E-06 47.4 7.3 83 3-86 2267-2356(2399)
106 KOG0041 Predicted Ca2+-binding 93.4 0.63 1.4E-05 35.2 7.6 83 3-86 113-198 (244)
107 KOG4251 Calcium binding protei 93.3 0.22 4.7E-06 38.8 5.2 60 27-87 282-341 (362)
108 KOG0751 Mitochondrial aspartat 93.3 0.52 1.1E-05 40.6 7.7 107 9-120 16-127 (694)
109 KOG0196 Tyrosine kinase, EPH ( 93.2 0.086 1.9E-06 47.9 3.3 55 189-243 610-686 (996)
110 KOG4666 Predicted phosphate ac 93.1 0.26 5.5E-06 40.1 5.4 65 26-91 259-324 (412)
111 KOG1094 Discoidin domain recep 92.0 0.18 3.8E-06 44.6 3.6 38 206-243 545-591 (807)
112 KOG3866 DNA-binding protein of 91.7 0.3 6.5E-06 39.4 4.2 61 31-92 249-325 (442)
113 KOG0035 Ca2+-binding actin-bun 90.9 0.71 1.5E-05 42.8 6.3 69 24-93 745-818 (890)
114 PRK12309 transaldolase/EF-hand 90.8 1.9 4E-05 36.8 8.4 74 24-119 297-375 (391)
115 PHA02988 hypothetical protein; 90.2 0.42 9.2E-06 38.5 4.0 53 186-243 12-74 (283)
116 KOG0169 Phosphoinositide-speci 89.8 0.67 1.4E-05 42.0 5.1 65 27-92 137-201 (746)
117 KOG2871 Uncharacterized conser 88.5 0.43 9.3E-06 39.5 2.8 63 23-86 306-369 (449)
118 KOG1026 Nerve growth factor re 88.4 0.74 1.6E-05 42.2 4.5 38 206-243 493-545 (774)
119 KOG0607 MAP kinase-interacting 88.1 0.48 1E-05 38.9 2.8 47 190-241 74-129 (463)
120 PLN03224 probable serine/threo 87.9 0.54 1.2E-05 41.5 3.3 41 197-237 143-208 (507)
121 PF10591 SPARC_Ca_bdg: Secrete 87.6 0.099 2.2E-06 36.1 -1.1 62 59-124 50-111 (113)
122 PRK09188 serine/threonine prot 87.1 0.81 1.8E-05 38.6 3.8 44 199-242 18-76 (365)
123 PF08976 DUF1880: Domain of un 86.9 0.57 1.2E-05 32.1 2.2 33 59-91 3-35 (118)
124 KOG0193 Serine/threonine prote 86.5 0.86 1.9E-05 40.5 3.7 38 205-242 398-443 (678)
125 KOG3555 Ca2+-binding proteogly 86.2 1.3 2.8E-05 36.4 4.3 92 26-123 211-304 (434)
126 cd07877 STKc_p38alpha_MAPK14 C 86.0 0.96 2.1E-05 37.6 3.7 53 190-242 8-71 (345)
127 KOG0575 Polo-like serine/threo 85.3 1.1 2.3E-05 39.7 3.6 42 201-242 20-73 (592)
128 KOG2052 Activin A type IB rece 85.2 0.62 1.3E-05 39.8 2.1 33 205-240 217-256 (513)
129 KOG0039 Ferric reductase, NADH 85.1 2.1 4.5E-05 39.1 5.6 82 3-92 2-90 (646)
130 PF09069 EF-hand_3: EF-hand; 85.0 8.7 0.00019 25.3 8.1 65 25-93 2-77 (90)
131 cd06638 STKc_myosinIIIA Cataly 84.8 0.71 1.5E-05 36.9 2.3 54 188-242 7-69 (286)
132 KOG1265 Phospholipase C [Lipid 84.4 16 0.00035 34.3 10.5 83 5-91 204-299 (1189)
133 KOG1029 Endocytic adaptor prot 83.9 4.6 9.9E-05 37.1 6.9 62 26-90 13-76 (1118)
134 cd06639 STKc_myosinIIIB Cataly 82.9 0.93 2E-05 36.4 2.3 52 189-241 12-72 (291)
135 TIGR01848 PHA_reg_PhaR polyhyd 82.7 4.6 0.0001 27.3 5.0 58 33-91 10-77 (107)
136 KOG0998 Synaptic vesicle prote 82.5 0.55 1.2E-05 44.1 0.8 65 23-90 280-344 (847)
137 KOG1025 Epidermal growth facto 82.1 2 4.4E-05 39.9 4.2 41 202-242 699-753 (1177)
138 PF07879 PHB_acc_N: PHB/PHA ac 82.0 2.7 5.9E-05 25.5 3.4 38 33-71 10-57 (64)
139 PF09279 EF-hand_like: Phospho 81.2 3.3 7.1E-05 26.5 4.0 52 3-54 13-69 (83)
140 cd06656 STKc_PAK3 Catalytic do 81.0 2.3 5E-05 34.4 4.0 42 201-242 21-71 (297)
141 KOG0600 Cdc2-related protein k 81.0 1.5 3.3E-05 38.1 2.9 43 201-243 119-172 (560)
142 KOG1707 Predicted Ras related/ 80.5 2.2 4.8E-05 37.8 3.7 61 25-92 314-378 (625)
143 PLN00034 mitogen-activated pro 80.4 1.8 3.9E-05 36.0 3.2 39 204-242 79-127 (353)
144 PF04478 Mid2: Mid2 like cell 79.9 1.9 4.2E-05 31.2 2.7 14 198-211 111-124 (154)
145 KOG1707 Predicted Ras related/ 79.6 8.5 0.00019 34.3 6.9 42 26-68 195-237 (625)
146 PF07308 DUF1456: Protein of u 78.7 10 0.00022 23.5 5.3 47 43-90 14-60 (68)
147 KOG0582 Ste20-like serine/thre 78.4 2.6 5.7E-05 36.2 3.4 37 206-242 33-79 (516)
148 cd06635 STKc_TAO1 Catalytic do 78.1 2.7 5.8E-05 34.4 3.5 42 201-242 27-80 (317)
149 cd06614 STKc_PAK Catalytic dom 77.8 2.6 5.6E-05 33.7 3.3 46 196-242 16-70 (286)
150 PTZ00284 protein kinase; Provi 77.7 1.8 3.8E-05 37.8 2.4 49 192-241 122-179 (467)
151 cd06657 STKc_PAK4 Catalytic do 77.6 3.3 7.2E-05 33.4 3.9 37 206-242 27-72 (292)
152 PF14513 DAG_kinase_N: Diacylg 77.2 2.6 5.6E-05 30.2 2.7 60 40-102 5-71 (138)
153 cd06659 STKc_PAK6 Catalytic do 76.5 3.2 6.9E-05 33.6 3.5 37 206-242 28-73 (297)
154 cd06648 STKc_PAK_II Catalytic 76.3 3.4 7.3E-05 33.2 3.6 41 202-242 22-71 (285)
155 KOG0192 Tyrosine kinase specif 75.6 2.7 5.9E-05 35.4 2.9 38 206-243 48-95 (362)
156 PTZ00283 serine/threonine prot 75.3 3.3 7.1E-05 36.6 3.5 45 198-242 31-86 (496)
157 KOG1006 Mitogen-activated prot 75.2 3 6.6E-05 33.5 2.8 37 205-241 70-116 (361)
158 KOG0984 Mitogen-activated prot 75.0 3.9 8.4E-05 31.7 3.2 36 206-241 53-98 (282)
159 PF01102 Glycophorin_A: Glycop 74.9 1.8 3.9E-05 30.2 1.4 20 151-170 75-94 (122)
160 cd06655 STKc_PAK2 Catalytic do 74.5 4 8.7E-05 33.0 3.6 42 201-242 21-71 (296)
161 KOG0658 Glycogen synthase kina 74.3 2.6 5.7E-05 35.0 2.4 30 201-230 26-64 (364)
162 PF05042 Caleosin: Caleosin re 74.1 18 0.0004 26.9 6.4 63 25-89 95-164 (174)
163 cd06654 STKc_PAK1 Catalytic do 73.7 5.1 0.00011 32.3 4.0 42 201-242 22-72 (296)
164 PF01023 S_100: S-100/ICaBP ty 73.7 10 0.00023 21.1 4.0 31 24-54 4-36 (44)
165 cd06658 STKc_PAK5 Catalytic do 73.5 4.7 0.0001 32.5 3.7 37 206-242 29-74 (292)
166 PF08414 NADPH_Ox: Respiratory 73.3 25 0.00054 23.5 6.4 65 24-94 28-95 (100)
167 KOG4236 Serine/threonine prote 73.1 5.3 0.00012 35.4 4.0 41 201-242 567-618 (888)
168 cd00086 homeodomain Homeodomai 72.5 12 0.00026 21.8 4.5 41 23-71 10-50 (59)
169 PLN02230 phosphoinositide phos 72.2 20 0.00043 32.4 7.5 69 22-91 25-102 (598)
170 KOG3449 60S acidic ribosomal p 71.9 26 0.00057 23.8 6.2 54 28-87 3-56 (112)
171 PLN02228 Phosphoinositide phos 71.1 24 0.00053 31.7 7.7 68 22-92 20-93 (567)
172 KOG0577 Serine/threonine prote 71.0 3.5 7.6E-05 37.0 2.5 41 201-241 28-80 (948)
173 KOG0169 Phosphoinositide-speci 70.9 25 0.00054 32.4 7.7 82 3-90 150-231 (746)
174 cd05104 PTKc_Kit Catalytic dom 70.5 4.7 0.0001 34.0 3.2 42 201-242 37-93 (375)
175 PF05454 DAG1: Dystroglycan (D 70.4 1.4 3E-05 35.7 0.0 77 5-89 8-91 (290)
176 PTZ00263 protein kinase A cata 69.7 4.2 9.1E-05 33.5 2.7 42 201-242 20-73 (329)
177 cd05106 PTKc_CSF-1R Catalytic 69.7 5 0.00011 33.9 3.2 42 201-242 40-96 (374)
178 cd06647 STKc_PAK_I Catalytic d 69.6 7 0.00015 31.5 3.9 42 201-242 21-71 (293)
179 cd07313 terB_like_2 tellurium 69.4 6.1 0.00013 26.4 3.0 53 40-92 13-66 (104)
180 cd05596 STKc_ROCK Catalytic do 68.6 2.8 6.1E-05 35.3 1.4 45 198-242 42-98 (370)
181 KOG1035 eIF-2alpha kinase GCN2 68.0 2 4.3E-05 41.5 0.4 48 196-243 476-533 (1351)
182 COG4359 Uncharacterized conser 68.0 23 0.00049 26.9 5.8 76 3-92 11-88 (220)
183 KOG1955 Ral-GTPase effector RA 67.9 6.7 0.00015 34.1 3.5 33 22-54 261-293 (737)
184 KOG0578 p21-activated serine/t 67.9 6.6 0.00014 34.6 3.5 41 201-242 275-325 (550)
185 PLN02222 phosphoinositide phos 67.8 24 0.00053 31.8 7.1 66 24-92 23-91 (581)
186 cd07850 STKc_JNK Catalytic dom 67.4 7.3 0.00016 32.4 3.7 44 199-242 16-70 (353)
187 PF03672 UPF0154: Uncharacteri 66.9 12 0.00027 22.8 3.5 32 41-73 30-61 (64)
188 cd06636 STKc_MAP4K4_6 Catalyti 66.8 6.8 0.00015 31.1 3.3 51 190-241 7-66 (282)
189 cd07876 STKc_JNK2 Catalytic do 66.3 7.1 0.00015 32.5 3.5 44 199-242 21-75 (359)
190 PRK00523 hypothetical protein; 66.2 13 0.00027 23.3 3.5 31 41-72 38-68 (72)
191 cd05105 PTKc_PDGFR_alpha Catal 65.4 8.4 0.00018 32.9 3.7 39 204-242 42-95 (400)
192 cd05107 PTKc_PDGFR_beta Cataly 65.2 7.4 0.00016 33.3 3.3 39 204-242 42-95 (401)
193 cd07875 STKc_JNK1 Catalytic do 64.4 9.5 0.00021 31.8 3.9 45 198-242 23-78 (364)
194 PF14575 EphA2_TM: Ephrin type 63.7 0.94 2E-05 28.7 -1.8 15 189-203 57-71 (75)
195 cd05055 PTKc_PDGFR Catalytic d 63.3 6.7 0.00015 31.8 2.7 43 200-242 36-93 (302)
196 PF09068 EF-hand_2: EF hand; 62.8 13 0.00028 26.2 3.7 28 28-55 99-126 (127)
197 PLN02223 phosphoinositide phos 62.6 31 0.00068 30.7 6.6 69 22-91 12-92 (537)
198 KOG0591 NIMA (never in mitosis 62.4 4 8.6E-05 33.2 1.1 37 206-242 26-73 (375)
199 cd05621 STKc_ROCK2 Catalytic d 61.0 6.9 0.00015 32.9 2.4 46 197-242 41-98 (370)
200 KOG0199 ACK and related non-re 60.5 13 0.00028 34.4 3.9 31 212-242 133-166 (1039)
201 PF07499 RuvA_C: RuvA, C-termi 59.5 28 0.0006 19.6 4.0 40 45-89 3-42 (47)
202 KOG0615 Serine/threonine prote 59.2 9.7 0.00021 32.6 2.8 38 205-242 178-231 (475)
203 PF00046 Homeobox: Homeobox do 59.2 30 0.00066 20.0 4.4 39 25-71 12-50 (57)
204 cd07874 STKc_JNK3 Catalytic do 58.9 12 0.00026 31.1 3.5 45 198-242 16-71 (355)
205 TIGR01982 UbiB 2-polyprenylphe 58.8 14 0.0003 32.1 3.9 37 201-241 120-164 (437)
206 KOG4004 Matricellular protein 58.1 4.7 0.0001 30.6 0.8 55 31-89 192-248 (259)
207 PTZ00036 glycogen synthase kin 58.1 9.6 0.00021 33.0 2.8 41 198-242 65-114 (440)
208 KOG0198 MEKK and related serin 57.7 13 0.00028 30.7 3.4 43 201-243 19-70 (313)
209 KOG1989 ARK protein kinase fam 57.6 11 0.00025 34.8 3.2 39 203-241 41-88 (738)
210 KOG4578 Uncharacterized conser 57.3 13 0.00028 30.7 3.1 45 8-55 355-399 (421)
211 KOG0032 Ca2+/calmodulin-depend 57.2 13 0.00028 31.7 3.4 38 205-242 41-90 (382)
212 PLN02952 phosphoinositide phos 56.9 33 0.00071 31.1 5.9 53 39-92 13-66 (599)
213 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 56.8 13 0.00028 29.6 3.2 29 214-242 32-60 (284)
214 PF00404 Dockerin_1: Dockerin 56.7 15 0.00033 16.9 2.1 13 36-48 1-13 (21)
215 KOG4347 GTPase-activating prot 56.5 9.1 0.0002 34.4 2.4 44 3-48 569-612 (671)
216 cd05622 STKc_ROCK1 Catalytic d 56.4 8.4 0.00018 32.4 2.2 52 191-242 35-98 (371)
217 PRK01844 hypothetical protein; 55.7 24 0.00051 22.1 3.4 31 41-72 37-67 (72)
218 COG3763 Uncharacterized protei 55.6 24 0.00052 21.9 3.4 31 41-72 37-67 (71)
219 KOG0663 Protein kinase PITSLRE 55.4 7.2 0.00016 32.5 1.5 44 199-242 76-130 (419)
220 PF08461 HTH_12: Ribonuclease 53.1 17 0.00037 22.3 2.6 36 39-75 10-45 (66)
221 PF03109 ABC1: ABC1 family; I 53.0 7.3 0.00016 27.0 1.1 34 205-241 17-58 (119)
222 KOG1954 Endocytosis/signaling 52.5 23 0.0005 30.1 3.9 55 29-87 447-501 (532)
223 PTZ00267 NIMA-related protein 52.5 16 0.00034 32.1 3.3 41 202-242 70-120 (478)
224 KOG0581 Mitogen-activated prot 52.5 21 0.00046 29.9 3.8 47 189-242 76-132 (364)
225 cd06633 STKc_TAO3 Catalytic do 52.2 20 0.00043 29.2 3.7 39 204-242 26-76 (313)
226 PF11116 DUF2624: Protein of u 52.0 64 0.0014 21.0 6.0 49 42-91 14-62 (85)
227 KOG0667 Dual-specificity tyros 51.8 18 0.00039 32.5 3.5 37 205-242 192-237 (586)
228 KOG0596 Dual specificity; seri 51.5 6.2 0.00013 35.1 0.6 38 205-242 367-414 (677)
229 KOG2301 Voltage-gated Ca2+ cha 51.3 13 0.00029 37.6 2.8 70 22-93 1413-1486(1592)
230 PF03732 Retrotrans_gag: Retro 50.7 43 0.00093 21.4 4.6 10 7-16 28-37 (96)
231 PF01885 PTS_2-RNA: RNA 2'-pho 50.2 34 0.00074 25.9 4.4 38 35-73 25-62 (186)
232 PRK10359 lipopolysaccharide co 49.1 18 0.00039 28.5 2.8 45 198-242 30-90 (232)
233 PTZ00426 cAMP-dependent protei 49.0 17 0.00037 30.2 2.8 42 201-242 32-86 (340)
234 PHA03212 serine/threonine kina 48.9 18 0.0004 30.7 3.1 37 200-242 93-138 (391)
235 PF12174 RST: RCD1-SRO-TAF4 (R 48.2 30 0.00065 21.6 3.1 47 5-55 8-54 (70)
236 PRK00819 RNA 2'-phosphotransfe 47.5 53 0.0012 24.7 5.0 37 36-73 27-63 (179)
237 TIGR01478 STEVOR variant surfa 47.1 12 0.00026 30.1 1.6 10 45-54 82-91 (295)
238 cd08315 Death_TRAILR_DR4_DR5 D 46.7 75 0.0016 21.1 5.1 42 24-72 2-43 (96)
239 PTZ00373 60S Acidic ribosomal 46.4 96 0.0021 21.4 6.2 44 29-73 6-49 (112)
240 PF12174 RST: RCD1-SRO-TAF4 (R 46.3 18 0.00039 22.5 1.9 46 43-92 9-54 (70)
241 PTZ00370 STEVOR; Provisional 46.3 13 0.00028 30.1 1.6 12 26-37 57-68 (296)
242 TIGR01639 P_fal_TIGR01639 Plas 46.2 43 0.00093 20.1 3.5 29 42-71 9-37 (61)
243 KOG0660 Mitogen-activated prot 46.2 17 0.00037 30.4 2.3 38 204-241 27-75 (359)
244 KOG0580 Serine/threonine prote 44.5 11 0.00023 29.9 0.9 43 199-241 22-76 (281)
245 PF13623 SurA_N_2: SurA N-term 44.4 1.2E+02 0.0026 21.9 7.4 44 43-87 90-143 (145)
246 PF15345 TMEM51: Transmembrane 44.3 36 0.00078 26.6 3.6 8 190-197 126-133 (233)
247 PF10897 DUF2713: Protein of u 44.1 40 0.00086 25.7 3.7 17 3-19 175-191 (246)
248 TIGR02675 tape_meas_nterm tape 44.0 31 0.00067 21.7 2.8 15 40-54 28-42 (75)
249 cd05038 PTKc_Jak_rpt2 Catalyti 43.8 28 0.00061 27.4 3.3 29 214-242 32-61 (284)
250 cd04790 HTH_Cfa-like_unk Helix 43.6 1.1E+02 0.0024 22.8 6.2 27 39-68 112-138 (172)
251 COG5502 Uncharacterized conser 43.5 1.2E+02 0.0026 21.6 5.9 48 4-55 74-124 (135)
252 cd06624 STKc_ASK Catalytic dom 43.2 30 0.00064 27.2 3.3 31 212-242 30-60 (268)
253 KOG0611 Predicted serine/threo 42.4 20 0.00044 30.8 2.2 37 206-242 60-108 (668)
254 TIGR03573 WbuX N-acetyl sugar 41.8 62 0.0013 27.1 5.1 14 78-91 301-314 (343)
255 KOG0046 Ca2+-binding actin-bun 41.1 77 0.0017 28.2 5.5 53 3-55 32-86 (627)
256 PLN03225 Serine/threonine-prot 41.1 19 0.00042 32.4 2.1 29 197-225 130-171 (566)
257 PF03979 Sigma70_r1_1: Sigma-7 40.4 31 0.00066 22.1 2.4 32 39-73 18-49 (82)
258 cd05049 PTKc_Trk Catalytic dom 40.2 33 0.00072 27.0 3.2 29 214-242 34-63 (280)
259 cd08330 CARD_ASC_NALP1 Caspase 40.0 89 0.0019 20.0 4.5 53 39-97 26-78 (82)
260 PF02009 Rifin_STEVOR: Rifin/s 39.4 9.6 0.00021 31.2 -0.1 6 160-165 275-280 (299)
261 smart00389 HOX Homeodomain. DN 38.8 75 0.0016 18.0 5.1 39 25-71 12-50 (56)
262 KOG0595 Serine/threonine-prote 37.1 31 0.00066 29.5 2.5 37 206-242 25-64 (429)
263 PF14513 DAG_kinase_N: Diacylg 36.9 1E+02 0.0023 22.1 4.8 35 40-75 46-81 (138)
264 PF04695 Pex14_N: Peroxisomal 36.6 1.6E+02 0.0034 21.0 5.9 47 27-76 5-51 (136)
265 PHA03265 envelope glycoprotein 36.6 34 0.00074 28.5 2.6 19 151-169 359-377 (402)
266 PRK04750 ubiB putative ubiquin 35.3 54 0.0012 29.5 3.9 26 200-226 121-155 (537)
267 KOG0574 STE20-like serine/thre 35.1 59 0.0013 26.9 3.7 35 205-241 39-82 (502)
268 PHA02105 hypothetical protein 34.7 87 0.0019 18.6 3.4 49 42-90 4-56 (68)
269 cd06646 STKc_MAP4K5 Catalytic 34.7 53 0.0012 25.7 3.6 31 212-242 31-61 (267)
270 KOG0998 Synaptic vesicle prote 33.6 28 0.00062 33.1 2.0 63 26-91 11-73 (847)
271 cd05080 PTKc_Tyk2_rpt2 Catalyt 33.4 55 0.0012 25.9 3.5 29 214-242 32-61 (283)
272 KOG0197 Tyrosine kinases [Sign 33.2 35 0.00076 29.8 2.3 37 205-242 212-256 (468)
273 PLN03150 hypothetical protein; 32.8 45 0.00097 30.5 3.1 12 109-120 519-530 (623)
274 PF11829 DUF3349: Protein of u 32.5 1.2E+02 0.0026 20.2 4.3 32 43-75 20-51 (96)
275 KOG4004 Matricellular protein 32.3 27 0.00058 26.6 1.3 27 26-52 222-248 (259)
276 PRK09430 djlA Dna-J like membr 32.2 1.2E+02 0.0025 24.5 5.1 49 38-92 67-121 (267)
277 PF12877 DUF3827: Domain of un 32.1 1.1E+02 0.0023 28.1 5.0 19 37-55 84-102 (684)
278 KOG1095 Protein tyrosine kinas 31.5 57 0.0012 31.7 3.5 40 204-243 697-751 (1025)
279 cd05833 Ribosomal_P2 Ribosomal 31.3 1.7E+02 0.0038 20.0 6.2 43 30-73 5-47 (109)
280 KOG0793 Protein tyrosine phosp 31.1 32 0.0007 31.6 1.8 13 185-197 649-661 (1004)
281 KOG0605 NDR and related serine 31.0 45 0.00097 29.6 2.6 31 197-227 139-178 (550)
282 PF05099 TerB: Tellurite resis 30.5 21 0.00044 25.3 0.5 52 39-91 36-89 (140)
283 COG4103 Uncharacterized protei 30.4 85 0.0018 22.6 3.5 58 30-91 34-94 (148)
284 PF07492 Trehalase_Ca-bi: Neut 30.3 15 0.00031 18.6 -0.2 18 66-83 2-19 (30)
285 TIGR00135 gatC glutamyl-tRNA(G 30.2 77 0.0017 20.7 3.2 30 43-73 1-30 (93)
286 KOG0194 Protein tyrosine kinas 30.2 53 0.0012 28.9 3.0 38 205-242 163-216 (474)
287 PF06648 DUF1160: Protein of u 29.9 1.8E+02 0.0039 20.4 4.9 51 20-74 31-82 (122)
288 cd05092 PTKc_TrkA Catalytic do 29.8 61 0.0013 25.6 3.2 29 214-242 34-62 (280)
289 PF12631 GTPase_Cys_C: Catalyt 29.6 95 0.0021 19.3 3.4 46 26-72 23-72 (73)
290 cd05098 PTKc_FGFR1 Catalytic d 29.5 68 0.0015 25.8 3.4 42 201-242 20-78 (307)
291 PRK09605 bifunctional UGMP fam 29.5 2.1E+02 0.0046 25.6 6.7 21 191-211 325-345 (535)
292 KOG0694 Serine/threonine prote 29.4 79 0.0017 29.0 3.9 45 197-241 366-422 (694)
293 cd06404 PB1_aPKC PB1 domain is 29.0 1.4E+02 0.003 19.4 3.9 14 5-18 19-32 (83)
294 PF09336 Vps4_C: Vps4 C termin 28.8 68 0.0015 19.4 2.5 25 42-67 29-53 (62)
295 KOG2345 Serine/threonine prote 27.6 45 0.00098 26.8 1.9 35 205-239 27-70 (302)
296 cd05093 PTKc_TrkB Catalytic do 27.4 65 0.0014 25.6 3.0 29 214-242 34-62 (288)
297 KOG1265 Phospholipase C [Lipid 27.2 2.4E+02 0.0053 27.1 6.6 42 46-91 208-249 (1189)
298 cd05096 PTKc_DDR1 Catalytic do 27.1 72 0.0016 25.6 3.2 29 214-242 45-74 (304)
299 KOG0598 Ribosomal protein S6 k 27.0 37 0.00081 28.5 1.4 43 200-242 26-80 (357)
300 KOG4403 Cell surface glycoprot 26.7 2E+02 0.0043 25.0 5.5 81 6-91 45-129 (575)
301 PHA03211 serine/threonine kina 26.3 68 0.0015 28.1 3.0 38 199-242 169-215 (461)
302 PF09373 PMBR: Pseudomurein-bi 26.0 70 0.0015 16.4 1.9 13 3-15 2-14 (33)
303 smart00090 RIO RIO-like kinase 25.9 1E+02 0.0022 24.2 3.7 21 205-225 34-64 (237)
304 KOG0599 Phosphorylase kinase g 25.8 96 0.0021 25.4 3.4 43 200-242 18-77 (411)
305 COG5562 Phage envelope protein 25.6 52 0.0011 23.4 1.7 15 3-17 86-100 (137)
306 PF07128 DUF1380: Protein of u 25.6 1.1E+02 0.0023 22.0 3.3 30 44-74 28-57 (139)
307 PRK00034 gatC aspartyl/glutamy 25.4 1.1E+02 0.0023 20.1 3.2 31 42-73 2-32 (95)
308 cd07316 terB_like_DjlA N-termi 25.4 2E+02 0.0044 18.8 5.7 52 40-91 13-64 (106)
309 PF12877 DUF3827: Domain of un 25.3 75 0.0016 29.0 3.0 10 82-91 156-165 (684)
310 cd06395 PB1_Map2k5 PB1 domain 25.2 93 0.002 19.9 2.6 44 5-53 22-67 (91)
311 PF01988 VIT1: VIT family; In 25.1 1.1E+02 0.0024 23.6 3.7 32 43-77 80-111 (213)
312 KOG0668 Casein kinase II, alph 25.1 89 0.0019 24.9 3.1 35 205-242 44-87 (338)
313 cd05094 PTKc_TrkC Catalytic do 25.0 80 0.0017 25.1 3.1 31 212-242 32-62 (291)
314 PF02885 Glycos_trans_3N: Glyc 24.9 1.6E+02 0.0035 17.7 3.8 15 58-72 13-27 (66)
315 cd06644 STKc_STK10_LOK Catalyt 24.8 85 0.0018 25.0 3.2 31 212-242 34-64 (292)
316 KOG0035 Ca2+-binding actin-bun 24.4 2E+02 0.0043 27.6 5.6 46 4-50 803-848 (890)
317 COG5394 Uncharacterized protei 24.4 3E+02 0.0065 20.4 5.5 39 33-72 19-67 (193)
318 PF13829 DUF4191: Domain of un 24.0 1.4E+02 0.003 23.5 3.9 39 33-72 158-196 (224)
319 KOG0585 Ca2+/calmodulin-depend 23.1 1.3E+02 0.0028 26.7 3.9 45 198-242 96-163 (576)
320 cd05103 PTKc_VEGFR2 Catalytic 22.9 98 0.0021 25.5 3.3 31 212-242 34-65 (343)
321 cd05079 PTKc_Jak1_rpt2 Catalyt 22.9 97 0.0021 24.5 3.2 29 214-242 32-61 (284)
322 PRK14981 DNA-directed RNA poly 22.5 1.5E+02 0.0033 20.3 3.6 27 59-89 78-104 (112)
323 PRK05988 formate dehydrogenase 22.1 3.2E+02 0.007 20.0 6.2 30 38-70 34-63 (156)
324 PF09107 SelB-wing_3: Elongati 22.1 1.4E+02 0.003 17.2 2.8 29 40-74 8-36 (50)
325 cd05046 PTK_CCK4 Pseudokinase 22.0 94 0.002 24.3 2.9 29 214-242 34-63 (275)
326 KOG0586 Serine/threonine prote 22.0 1.2E+02 0.0026 27.5 3.6 44 198-241 55-109 (596)
327 KOG4286 Dystrophin-like protei 21.2 1.4E+02 0.0031 27.9 4.0 62 27-90 471-532 (966)
328 KOG4403 Cell surface glycoprot 21.2 3.8E+02 0.0083 23.4 6.2 78 3-91 82-159 (575)
329 PF01325 Fe_dep_repress: Iron 20.8 1.2E+02 0.0025 18.1 2.4 50 24-83 6-55 (60)
330 KOG1167 Serine/threonine prote 20.8 1.5E+02 0.0032 25.6 3.7 46 194-241 31-88 (418)
331 PF04361 DUF494: Protein of un 20.7 3.5E+02 0.0076 19.8 5.4 40 28-70 5-45 (155)
332 KOG4301 Beta-dystrobrevin [Cyt 20.7 1.6E+02 0.0034 24.7 3.8 56 32-89 116-171 (434)
333 PF06384 ICAT: Beta-catenin-in 20.7 1.3E+02 0.0029 19.1 2.7 29 41-70 8-43 (78)
334 PF10437 Lip_prot_lig_C: Bacte 20.6 2.4E+02 0.0052 17.9 4.6 42 45-89 44-86 (86)
335 PF12419 DUF3670: SNF2 Helicas 20.6 2.6E+02 0.0056 20.0 4.6 50 39-88 80-138 (141)
336 PHA03209 serine/threonine kina 20.6 1.2E+02 0.0026 25.2 3.4 28 197-224 64-100 (357)
337 cd05050 PTKc_Musk Catalytic do 20.5 1E+02 0.0022 24.4 2.8 29 214-242 34-63 (288)
338 PF05568 ASFV_J13L: African sw 20.5 73 0.0016 22.9 1.6 8 162-169 48-55 (189)
339 PF02761 Cbl_N2: CBL proto-onc 20.4 2.6E+02 0.0056 18.2 4.7 46 41-87 21-66 (85)
340 cd05102 PTKc_VEGFR3 Catalytic 20.2 63 0.0014 26.5 1.6 30 213-242 35-65 (338)
341 PF11460 DUF3007: Protein of u 20.2 1.9E+02 0.0041 19.6 3.5 14 59-72 89-102 (104)
342 PRK06049 rpl30p 50S ribosomal 20.0 2.9E+02 0.0062 20.3 4.7 47 41-95 56-106 (154)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=125.76 Aligned_cols=89 Identities=30% Similarity=0.422 Sum_probs=84.4
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
.+.|+|.+|+.+|.......+..++++++|+.||+|++|+|+..+|.++++.+| +.++++|++.+++.+|.|++|.|+|
T Consensus 69 ~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~~ 147 (160)
T COG5126 69 NETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEIDY 147 (160)
T ss_pred CCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEeH
Confidence 488999999999999988778899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 048355 83 MEFCVLMFRL 92 (243)
Q Consensus 83 ~ef~~~~~~~ 92 (243)
++|++++...
T Consensus 148 ~eF~~~~~~~ 157 (160)
T COG5126 148 EEFKKLIKDS 157 (160)
T ss_pred HHHHHHHhcc
Confidence 9999987653
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.70 E-value=7.5e-17 Score=118.35 Aligned_cols=88 Identities=32% Similarity=0.425 Sum_probs=80.5
Q ss_pred CCcccHHHHHHHHHhhcCCCC----hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCC
Q 048355 3 AASRNFEDCLPLMANKLGGDG----LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDG 78 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~----~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g 78 (243)
+|.|+|++|+.++........ ..++++++|+.||+|++|+||..||+.+|..+| .+.+.++++.+++.+|.|+||
T Consensus 58 ~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~dg 136 (151)
T KOG0027|consen 58 DGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDGDG 136 (151)
T ss_pred CCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCCCC
Confidence 689999999999987765433 345999999999999999999999999999999 999999999999999999999
Q ss_pred cccHHHHHHHHHh
Q 048355 79 ALNQMEFCVLMFR 91 (243)
Q Consensus 79 ~i~~~ef~~~~~~ 91 (243)
.|+|+||+.++..
T Consensus 137 ~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 137 KVNFEEFVKMMSG 149 (151)
T ss_pred eEeHHHHHHHHhc
Confidence 9999999998864
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.4e-16 Score=110.53 Aligned_cols=88 Identities=34% Similarity=0.516 Sum_probs=84.6
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.|+|++|+.+|..++...++.++++.+|+.+|-|++|+|+..+|+.+.+.|| ++++++|+++|+.++|.|+||.|+-
T Consensus 83 ~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevne 161 (172)
T KOG0028|consen 83 SGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNE 161 (172)
T ss_pred CceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccH
Confidence 689999999999998888888999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048355 83 MEFCVLMFR 91 (243)
Q Consensus 83 ~ef~~~~~~ 91 (243)
+||..++.+
T Consensus 162 eEF~~imk~ 170 (172)
T KOG0028|consen 162 EEFIRIMKK 170 (172)
T ss_pred HHHHHHHhc
Confidence 999998765
No 4
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.59 E-value=1.6e-14 Score=101.36 Aligned_cols=91 Identities=22% Similarity=0.359 Sum_probs=86.8
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALN 81 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~ 81 (243)
++|.|+|.-|+.++..++...++++.|..||+.||.+++|.|..+.|+++|...| ..++++|++.|++.+..|..|.++
T Consensus 77 a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 77 APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFD 155 (171)
T ss_pred CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCcee
Confidence 5789999999999999999889999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 048355 82 QMEFCVLMFRLS 93 (243)
Q Consensus 82 ~~ef~~~~~~~~ 93 (243)
|.+|+.++.+..
T Consensus 156 y~~~~~~ithG~ 167 (171)
T KOG0031|consen 156 YKAFTYIITHGE 167 (171)
T ss_pred HHHHHHHHHccc
Confidence 999999998643
No 5
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=2.4e-14 Score=94.35 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=65.0
Q ss_pred hHHHHHHHHhhhcC-CCCCceeHHHHHHHHHH-cCCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 048355 24 LIGELCNGFNLLMD-ADKGVITFESLKKNSAL-LGLQDLSD-DDLKCMLKEGDFDCDGALNQMEFCVLMFRLSP 94 (243)
Q Consensus 24 ~~~~~~~~F~~~D~-~~~G~i~~~el~~~l~~-~g~~~~~~-~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 94 (243)
....++.+|+.||+ +++|+|+..||+.+++. +| ..+++ +++++|++.+|.|+||.|+|+||+.++..+..
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 45789999999999 99999999999999999 99 88888 99999999999999999999999999987644
No 6
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.52 E-value=7.6e-14 Score=100.85 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=85.6
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASS 101 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 101 (243)
+++.++++++|++||+|++|.|+..||..+|+.+| .++|+.++.+|+..+|. +.+.|+|.+|+.++...... .+...
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~-~~~~E 92 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR-GDKEE 92 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc-CCcHH
Confidence 56678999999999999999999999999999999 99999999999999998 89999999999999876542 23456
Q ss_pred HHHHhhhhcCCCCCCcCCC
Q 048355 102 NLMLLFQFTDISQRPLLSG 120 (243)
Q Consensus 102 ~~~~~~~~~d~~~~~~~~~ 120 (243)
.+.|+|..+|..++|+.+-
T Consensus 93 el~~aF~~fD~d~dG~Is~ 111 (160)
T COG5126 93 ELREAFKLFDKDHDGYISI 111 (160)
T ss_pred HHHHHHHHhCCCCCceecH
Confidence 7789999999999988664
No 7
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=4.4e-13 Score=99.09 Aligned_cols=88 Identities=31% Similarity=0.556 Sum_probs=56.6
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.|+|++|+.++..........+.++.+|+.+|.+++|+|+.+||..++..+| ..+++.++..++..+|.+++|.|+|
T Consensus 67 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~ 145 (158)
T PTZ00183 67 SGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISE 145 (158)
T ss_pred CCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 456666676666554333334445666667777777777777777776666666 6666666777777666666667777
Q ss_pred HHHHHHHHh
Q 048355 83 MEFCVLMFR 91 (243)
Q Consensus 83 ~ef~~~~~~ 91 (243)
+||..++..
T Consensus 146 ~ef~~~~~~ 154 (158)
T PTZ00183 146 EEFYRIMKK 154 (158)
T ss_pred HHHHHHHhc
Confidence 777666554
No 8
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=4.1e-13 Score=98.50 Aligned_cols=98 Identities=31% Similarity=0.413 Sum_probs=85.5
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhh---
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELME--- 98 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~--- 98 (243)
.....+++++|+.||++++|+|+..||..+++.+| .++++.++..++.+.|.+++|.|+++||+.++.........
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 34567899999999999999999999999999999 99999999999999999999999999999999875433221
Q ss_pred hhhHHHHhhhhcCCCCCCcCCC
Q 048355 99 ASSNLMLLFQFTDISQRPLLSG 120 (243)
Q Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~ 120 (243)
.......+|..+|..++|++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~ 104 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISA 104 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcH
Confidence 2347788999999999988664
No 9
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.47 E-value=2.5e-13 Score=85.29 Aligned_cols=62 Identities=31% Similarity=0.460 Sum_probs=55.0
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHH----HHHHhcCCCCCCcccHHHHHHHH
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLK----CMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~----~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
+++++|+.||+|++|+|+.+||+.+++.++ ...++.+++ .+++.+|.|+||.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG-RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT-SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998 777665554 45999999999999999999875
No 10
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.47 E-value=3.8e-13 Score=88.82 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=63.5
Q ss_pred hHHHHHHHHhhhc-CCCCC-ceeHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 24 LIGELCNGFNLLM-DADKG-VITFESLKKNSAL-----LGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 24 ~~~~~~~~F~~~D-~~~~G-~i~~~el~~~l~~-----~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
.+..++++|+.|| +|++| +|+.+||+.+|+. +| ...++++++++++.+|.|++|+|+|+||+.++....
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4568999999998 89999 6999999999999 88 889999999999999999999999999999887654
No 11
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.46 E-value=6.9e-13 Score=99.20 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=75.8
Q ss_pred CCc-ccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCCCCC--HHH----HHHHHHhcCC
Q 048355 3 AAS-RNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL-GLQDLS--DDD----LKCMLKEGDF 74 (243)
Q Consensus 3 ~g~-i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~--~~e----~~~~~~~~d~ 74 (243)
+|. |+|++|+..++...+.....++++-+|++||.+++|+|+.+|+++++..+ + .+.+ ++. ++..+.++|.
T Consensus 80 ~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~-~~~~~~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 80 NGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG-ENDDMSDEQLEDIVDKTFEEADT 158 (187)
T ss_pred CCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc-cCCcchHHHHHHHHHHHHHHhCC
Confidence 344 99999999999888766666799999999999999999999999999876 4 3444 443 4667889999
Q ss_pred CCCCcccHHHHHHHHHhh
Q 048355 75 DCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 75 ~~~g~i~~~ef~~~~~~~ 92 (243)
|+||+|+|+||.+++.+.
T Consensus 159 d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CCCCcCcHHHHHHHHHcC
Confidence 999999999999998865
No 12
>PTZ00184 calmodulin; Provisional
Probab=99.45 E-value=1.1e-12 Score=95.88 Aligned_cols=87 Identities=29% Similarity=0.501 Sum_probs=62.2
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.|+|++|+.++..........+.+..+|+.||.+++|+|+.+|+..++...| ..++.++++.++..+|.+++|.|+|
T Consensus 61 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~ 139 (149)
T PTZ00184 61 NGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINY 139 (149)
T ss_pred CCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcH
Confidence 566777777777665443334455677777777777777777777777777777 6677777777777777777777777
Q ss_pred HHHHHHHH
Q 048355 83 MEFCVLMF 90 (243)
Q Consensus 83 ~ef~~~~~ 90 (243)
+||+.++.
T Consensus 140 ~ef~~~~~ 147 (149)
T PTZ00184 140 EEFVKMMM 147 (149)
T ss_pred HHHHHHHh
Confidence 77776654
No 13
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.45 E-value=4.9e-13 Score=92.42 Aligned_cols=86 Identities=20% Similarity=0.401 Sum_probs=75.7
Q ss_pred CCcccHHHHHHHHHhhcC--CCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 048355 3 AASRNFEDCLPLMANKLG--GDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGAL 80 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~--~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i 80 (243)
...|+|++|+.++....+ .+...+++.+..+.||++++|.|...||+++|..+| +.++++|+++++.-. .|++|.|
T Consensus 63 ~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~-eD~nG~i 140 (152)
T KOG0030|consen 63 VKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQ-EDSNGCI 140 (152)
T ss_pred hhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHccc-cccCCcC
Confidence 357999999999875443 356678999999999999999999999999999999 999999999999865 3788999
Q ss_pred cHHHHHHHHH
Q 048355 81 NQMEFCVLMF 90 (243)
Q Consensus 81 ~~~ef~~~~~ 90 (243)
+|+.|++.+.
T Consensus 141 ~YE~fVk~i~ 150 (152)
T KOG0030|consen 141 NYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHh
Confidence 9999998765
No 14
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.37 E-value=4.3e-12 Score=84.91 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhhc-CCCCC-ceeHHHHHHHHHH-c----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 24 LIGELCNGFNLLM-DADKG-VITFESLKKNSAL-L----GLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 24 ~~~~~~~~F~~~D-~~~~G-~i~~~el~~~l~~-~----g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
.+..++++|+.|| +|++| +|+.+||+.+++. + + ...++.+++++++.+|.|+||.|+|+||+.++..+.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4568999999999 88998 5999999999976 2 3 345788999999999999999999999999998764
No 15
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.35 E-value=6.1e-12 Score=83.06 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=63.3
Q ss_pred ChHHHHHHHHhhhcC-CC-CCceeHHHHHHHHHH---cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 048355 23 GLIGELCNGFNLLMD-AD-KGVITFESLKKNSAL---LGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSP 94 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~-~~-~G~i~~~el~~~l~~---~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 94 (243)
.....+...|+.||. ++ +|+|+.+||+++++. +| .++++++++++++.+|.|++|+|+|+||+.++..+..
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 345678999999997 77 999999999999973 68 8999999999999999999999999999999887643
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=5.9e-12 Score=84.33 Aligned_cols=70 Identities=24% Similarity=0.266 Sum_probs=61.1
Q ss_pred hHHHHHHHHhhhc-CCCCCc-eeHHHHHHHHHH-cCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 24 LIGELCNGFNLLM-DADKGV-ITFESLKKNSAL-LGL---QDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 24 ~~~~~~~~F~~~D-~~~~G~-i~~~el~~~l~~-~g~---~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
..+.++++|+.|| ++++|+ |+..||+.+|+. +|. ..+++++++++++.+|.+++|.|+|+||+.++....
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 4578999999997 999995 999999999985 540 356889999999999999999999999999888654
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.34 E-value=7.3e-12 Score=84.21 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=61.7
Q ss_pred hHHHHHHHHhhhcC-CC-CCceeHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 24 LIGELCNGFNLLMD-AD-KGVITFESLKKNSAL-----LGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 24 ~~~~~~~~F~~~D~-~~-~G~i~~~el~~~l~~-----~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
....++++|+.||. |+ +|+|+.+||+.+++. +| .++++++++.+++.+|.+++|.|+|+||+.++....
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45689999999997 97 799999999999986 56 678999999999999999999999999999887643
No 18
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=1e-11 Score=92.98 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc----CC------CCCCHHHHHHHHHhc
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL----GL------QDLSDDDLKCMLKEG 72 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~----g~------~~~~~~e~~~~~~~~ 72 (243)
+|.|+|.||+..++.... ....+.+.++|++||.|++|+|+.+|+-.+++.. |. ..-+++-++.+|+.+
T Consensus 78 dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~ 156 (193)
T KOG0044|consen 78 DGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKM 156 (193)
T ss_pred CCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHc
Confidence 678888888888776655 4566778888888888888888888887776542 30 011344577888888
Q ss_pred CCCCCCcccHHHHHHHHHh
Q 048355 73 DFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 73 d~~~~g~i~~~ef~~~~~~ 91 (243)
|.|+||.|+++||+.....
T Consensus 157 D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 157 DKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCCCCCcccHHHHHHHhhh
Confidence 8888888888888877654
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=1.4e-11 Score=83.25 Aligned_cols=68 Identities=24% Similarity=0.215 Sum_probs=62.2
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
.+....++++|+.||++++|.|+.+|++.+++..| ++++++++++..+|.+++|.|+|+||+.++...
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 34567899999999999999999999999999977 789999999999999999999999999988764
No 20
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.26 E-value=8.1e-11 Score=88.00 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALN 81 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~ 81 (243)
.+|.|+|.||..+... ..+.+.+|+.||+|++|.|+..||+++|..+| ..++++-.+.+++++|...+|.|.
T Consensus 107 ~~G~i~f~EF~~Lw~~-------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~ 178 (221)
T KOG0037|consen 107 NSGTIGFKEFKALWKY-------INQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRID 178 (221)
T ss_pred CCCccCHHHHHHHHHH-------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCcee
Confidence 3689999999987743 46899999999999999999999999999999 999999999999999987799999
Q ss_pred HHHHHHHHHhhCcchhhhhhHHHHhhhhcCCCCCCc
Q 048355 82 QMEFCVLMFRLSPELMEASSNLMLLFQFTDISQRPL 117 (243)
Q Consensus 82 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (243)
|++|++.+..+. .+...|...|....+.
T Consensus 179 FD~FI~ccv~L~--------~lt~~Fr~~D~~q~G~ 206 (221)
T KOG0037|consen 179 FDDFIQCCVVLQ--------RLTEAFRRRDTAQQGS 206 (221)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHhcccccee
Confidence 999999877542 3344666666665543
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.24 E-value=2.6e-11 Score=80.56 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=61.1
Q ss_pred ChHHHHHHHHhhhcC--CCCCceeHHHHHHHHHH-cCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 23 GLIGELCNGFNLLMD--ADKGVITFESLKKNSAL-LGLQDL----SDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~--~~~G~i~~~el~~~l~~-~g~~~~----~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
...+.++++|..||+ +++|+|+.+||+.+++. +| .++ ++.+++.++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 356789999999999 89999999999999986 56 444 48999999999999999999999999988765
No 22
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.24 E-value=3.2e-11 Score=75.77 Aligned_cols=61 Identities=25% Similarity=0.279 Sum_probs=56.4
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 29 CNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 29 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
+++|+.+|++++|.|+.+|++.++..+| .+++++++++..+|.+++|.|+|+||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999988 488999999999999999999999999887653
No 23
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.23 E-value=8.4e-11 Score=77.73 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=60.8
Q ss_pred ChHHHHHHHHhh-hcCCCCC-ceeHHHHHHHHHHc-----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 23 GLIGELCNGFNL-LMDADKG-VITFESLKKNSALL-----GLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 23 ~~~~~~~~~F~~-~D~~~~G-~i~~~el~~~l~~~-----g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
..+..+..+|+. +|++++| +|+.+||+.++... + .+.++.+++++++.+|.|+||.|+|+||+.++..+.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 345789999999 7788976 99999999999874 4 456788999999999999999999999999888764
No 24
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.20 E-value=1.4e-10 Score=81.78 Aligned_cols=92 Identities=25% Similarity=0.319 Sum_probs=78.8
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASS 101 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 101 (243)
+.++.++++||.++|.|+||.|+.++|+.++..+| ...++++++.|+++.. |.|+|.-|+.++-....+- ....
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlG-k~~~d~elDaM~~Ea~----gPINft~FLTmfGekL~gt-dpe~ 101 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLG-KIASDEELDAMMKEAP----GPINFTVFLTMFGEKLNGT-DPEE 101 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhCC----CCeeHHHHHHHHHHHhcCC-CHHH
Confidence 45778999999999999999999999999999999 8999999999999864 7899999999997654442 2345
Q ss_pred HHHHhhhhcCCCCCCcCC
Q 048355 102 NLMLLFQFTDISQRPLLS 119 (243)
Q Consensus 102 ~~~~~~~~~d~~~~~~~~ 119 (243)
.++.+|..+|-.+.|..-
T Consensus 102 ~I~~AF~~FD~~~~G~I~ 119 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKID 119 (171)
T ss_pred HHHHHHHhcCccCCCccC
Confidence 678899999988876643
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.2e-10 Score=69.91 Aligned_cols=52 Identities=33% Similarity=0.492 Sum_probs=48.7
Q ss_pred CCCceeHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 39 DKGVITFESLKKNSALLGLQD-LSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g~~~-~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
.+|+|+.++|+.++..+| .+ +++++++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998889 88 99999999999999999999999999998864
No 26
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.8e-10 Score=81.86 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhHH
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSNL 103 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 103 (243)
+..+++.+|..||.+++|+|+.+||+-+++.+| ..+...|+.+++..+|.++.|.|+|++|...+...... .......
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e-~dt~eEi 108 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE-RDTKEEI 108 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc-cCcHHHH
Confidence 346799999999999999999999999999999 99999999999999999999999999999987764322 2244567
Q ss_pred HHhhhhcCCCCCCcCC
Q 048355 104 MLLFQFTDISQRPLLS 119 (243)
Q Consensus 104 ~~~~~~~d~~~~~~~~ 119 (243)
..+|..+|...+|.+.
T Consensus 109 ~~afrl~D~D~~Gkis 124 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKIS 124 (172)
T ss_pred HHHHHcccccCCCCcC
Confidence 7899999999987644
No 27
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=80.37 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=74.9
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHH----HHHHHhcCCCCCC
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDL----KCMLKEGDFDCDG 78 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~----~~~~~~~d~~~~g 78 (243)
.|.++|++|+.+++.........-+..-||+.||-|+|++|...+|..+++.+-...++++|+ ++++.+.|.|+||
T Consensus 85 ~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDg 164 (189)
T KOG0038|consen 85 RGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDG 164 (189)
T ss_pred CCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCC
Confidence 578999999999876644322334677799999999999999999999998873246888885 5678899999999
Q ss_pred cccHHHHHHHHHhhC
Q 048355 79 ALNQMEFCVLMFRLS 93 (243)
Q Consensus 79 ~i~~~ef~~~~~~~~ 93 (243)
++++.||..++.+..
T Consensus 165 kl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 165 KLSFAEFEHVILRAP 179 (189)
T ss_pred cccHHHHHHHHHhCc
Confidence 999999999988653
No 28
>PTZ00183 centrin; Provisional
Probab=99.15 E-value=3.2e-10 Score=83.70 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=79.1
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASS 101 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 101 (243)
+.+..++..+|..+|.+++|.|+.+||..+++.+| .+++..++..++..+|.+++|.|+|+||+.++........ ...
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~-~~~ 90 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD-PRE 90 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC-cHH
Confidence 34567899999999999999999999999999999 7889999999999999999999999999988765432211 224
Q ss_pred HHHHhhhhcCCCCCCcCC
Q 048355 102 NLMLLFQFTDISQRPLLS 119 (243)
Q Consensus 102 ~~~~~~~~~d~~~~~~~~ 119 (243)
.+...|..+|..+++.+.
T Consensus 91 ~l~~~F~~~D~~~~G~i~ 108 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKIS 108 (158)
T ss_pred HHHHHHHHhCCCCCCcCc
Confidence 566788999988887644
No 29
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.14 E-value=2.5e-10 Score=79.16 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=81.8
Q ss_pred CCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHHHhhCcchhh
Q 048355 21 GDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFD--CDGALNQMEFCVLMFRLSPELME 98 (243)
Q Consensus 21 ~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~ 98 (243)
.+++.++++++|.+||..+||+|+..+..++|+.+| .++|+.++.+.+.+++.+ +-..|+|++|+.++.........
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 367779999999999999999999999999999999 999999999999998876 44689999999999886543111
Q ss_pred -hhhHHHHhhhhcCCCCCCcCCC
Q 048355 99 -ASSNLMLLFQFTDISQRPLLSG 120 (243)
Q Consensus 99 -~~~~~~~~~~~~d~~~~~~~~~ 120 (243)
.-....+....+|..|+|...+
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~ 107 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMG 107 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeH
Confidence 1234556778889999977554
No 30
>PTZ00184 calmodulin; Provisional
Probab=99.12 E-value=5.5e-10 Score=81.49 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=79.3
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhH
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSN 102 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 102 (243)
...+.++..|+.+|.+++|.|+.+||..++..++ .+++++++..++..+|.+++|.|+|+||+.++....... .....
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~-~~~~~ 85 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-DSEEE 85 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC-cHHHH
Confidence 3456799999999999999999999999999999 888899999999999999999999999999887543211 12345
Q ss_pred HHHhhhhcCCCCCCcCC
Q 048355 103 LMLLFQFTDISQRPLLS 119 (243)
Q Consensus 103 ~~~~~~~~d~~~~~~~~ 119 (243)
+...|..+|..+++.+.
T Consensus 86 ~~~~F~~~D~~~~g~i~ 102 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFIS 102 (149)
T ss_pred HHHHHHhhCCCCCCeEe
Confidence 56789999998887654
No 31
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.11 E-value=3.1e-10 Score=92.24 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=86.9
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.+||.||..++. +.+.++.+.|+..|.++||.|+.+|+.+.++.+| .+++++++.++++.+|.++++.|++
T Consensus 65 dg~vDy~eF~~Y~~------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~ 137 (463)
T KOG0036|consen 65 DGRVDYSEFKRYLD------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDL 137 (463)
T ss_pred CCcccHHHHHHHHH------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeecc
Confidence 68999999999994 4567899999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhCcchhhhhhHHHHhhhhcCCCCC
Q 048355 83 MEFCVLMFRLSPELMEASSNLMLLFQFTDISQR 115 (243)
Q Consensus 83 ~ef~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 115 (243)
+||...+.-....-+++.-..+.+...+|+-.+
T Consensus 138 ~e~rd~~ll~p~s~i~di~~~W~h~~~idigE~ 170 (463)
T KOG0036|consen 138 EEWRDHLLLYPESDLEDIYDFWRHVLLIDIGED 170 (463)
T ss_pred HHHHhhhhcCChhHHHHHHHhhhhheEEEcccc
Confidence 999988776554333333222234445555443
No 32
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.08 E-value=5.2e-10 Score=82.30 Aligned_cols=71 Identities=28% Similarity=0.332 Sum_probs=63.6
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSP 94 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 94 (243)
..+..+...|+.||.+.||+|+..||+.+|.++| .+-|.--+.+|+++.|.|.||+|+|-||+-++.....
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 3456788899999999999999999999999999 7778778999999999999999999999988876543
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=99.06 E-value=9.2e-10 Score=67.09 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=56.8
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHh
Q 048355 30 NGFNLLMDADKGVITFESLKKNSALLGLQ-DLSDDDLKCMLKEGDFDCD-GALNQMEFCVLMFR 91 (243)
Q Consensus 30 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~-~~~~~e~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 91 (243)
.+|+.||+++.|.|...+++.+|+.++ . .+++.+++.+.+++|+++. |.|+++.|+.+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~-~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVT-GRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHc-CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999998 7 8999999999999999987 99999999998864
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.06 E-value=8.8e-10 Score=67.61 Aligned_cols=61 Identities=34% Similarity=0.530 Sum_probs=57.4
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 28 LCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 28 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
+..+|+.+|.+++|.|+.+|+..+++.++ .+.+.+++..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999999999 89999999999999999999999999998764
No 35
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-09 Score=81.51 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=43.4
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.++-++|..+++...+..++..-...+|+.||.|++|.|+..||...+..+. ..-.++.++..|+.+|.|+||.|++
T Consensus 41 ~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~ 119 (193)
T KOG0044|consen 41 SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITK 119 (193)
T ss_pred CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcH
Confidence 445555555555554444344444444555555555555555555555444443 2334444445555555555555555
Q ss_pred HHHHHHHH
Q 048355 83 MEFCVLMF 90 (243)
Q Consensus 83 ~ef~~~~~ 90 (243)
+|++.++.
T Consensus 120 ~Eml~iv~ 127 (193)
T KOG0044|consen 120 EEMLKIVQ 127 (193)
T ss_pred HHHHHHHH
Confidence 55554443
No 36
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.04 E-value=1.1e-09 Score=75.85 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
...+.++|..+|.|+||+|+.+||..+. ++ ..+..+..++..+|.|+||.|+++||...+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3568999999999999999999999877 44 5577899999999999999999999999883
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.02 E-value=1.5e-09 Score=71.82 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=60.3
Q ss_pred ChHHHHHHHHhhhcCC--CCCceeHHHHHHHHH-HcCCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 23 GLIGELCNGFNLLMDA--DKGVITFESLKKNSA-LLGLQDLS----DDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~--~~G~i~~~el~~~l~-~~g~~~~~----~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
.....+...|+.|+.. ++|+|+.+||+.++. .+| ..++ +.+++.++..+|.+++|.|+|+||+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456789999999955 489999999999997 667 6676 8999999999999999999999999988765
No 38
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.99 E-value=6.7e-10 Score=92.69 Aligned_cols=59 Identities=41% Similarity=0.514 Sum_probs=51.1
Q ss_pred CCCceeHHHHHHHhcCCCccCccccCC--------CCCCcEEEEEEecccccccHHHHHHHHHHhcC
Q 048355 185 ELPLFELAAISNATDNFSINNKLGEEH--------TSGEQEISVKRLSKISEQGLKELKNEVILFSK 243 (243)
Q Consensus 185 ~~~~~~~~~i~~aT~~f~~~n~iG~G~--------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg~ 243 (243)
....|+|.+|..||+||+++|+||+|| +++|+.||||++.....+..++|.+||++|++
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~ 127 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSR 127 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhc
Confidence 567799999999999999999999998 78899999999976543326779999999975
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.91 E-value=8.5e-09 Score=90.67 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=62.1
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCC-CCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhh
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQ-DLSDDD---LKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEA 99 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~-~~~~~e---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 99 (243)
+.++++++|+.||+|++|++ +..+++.+| . .+++++ ++++|+.+|.|++|.|+|+||+.++...... ..
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG-~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~--~s 213 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCS-IEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL--VA 213 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC--CC
Confidence 44677888888888888876 777777777 4 566665 6778888888888888888888777754322 22
Q ss_pred hhHHHHhhhhcCCCCCCcC
Q 048355 100 SSNLMLLFQFTDISQRPLL 118 (243)
Q Consensus 100 ~~~~~~~~~~~d~~~~~~~ 118 (243)
...+.++|..+|..+++..
T Consensus 214 eEEL~eaFk~fDkDgdG~I 232 (644)
T PLN02964 214 ANKKEELFKAADLNGDGVV 232 (644)
T ss_pred HHHHHHHHHHhCCCCCCcC
Confidence 3345667777777777663
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.75 E-value=1.8e-08 Score=51.64 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=23.5
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+++++|+.||+|++|+|+.+||+.+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788888888888888888888888754
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.71 E-value=1.5e-07 Score=61.59 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=58.3
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSAL-----LGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSP 94 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-----~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 94 (243)
..+..+..+|..|- .+.+.++..||+.+++. ++ ..-.++.++++++.+|.|+||.|+|.||+.++..+..
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 34567899999998 44679999999999964 34 4456788999999999999999999999999987644
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=98.70 E-value=9.9e-08 Score=84.08 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=61.1
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
.+.++|+.+|.|++|.|+.+||..++..++ ...+++++.++|+.+|.|++|.|+++||..++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 389999999999999999999999999998 8899999999999999999999999999999887
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.66 E-value=2.1e-07 Score=69.97 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=79.0
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhHHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSNLM 104 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 104 (243)
..++...|...|+|+.|.|+.+||+.+|....+.+++.+.++-|+..+|.+.+|+|++.||..++..+ ..|.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--------~~Wr 127 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--------NQWR 127 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH--------HHHH
Confidence 45899999999999999999999999999765468999999999999999999999999999998854 4789
Q ss_pred HhhhhcCCCCCCcCCC
Q 048355 105 LLFQFTDISQRPLLSG 120 (243)
Q Consensus 105 ~~~~~~d~~~~~~~~~ 120 (243)
..|.-+|.++.+..+.
T Consensus 128 ~vF~~~D~D~SG~I~~ 143 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDS 143 (221)
T ss_pred HHHHhcccCCCCcccH
Confidence 9999999999888654
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.56 E-value=3.4e-07 Score=54.63 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=44.4
Q ss_pred CCCcccHHHHHHHHHhhcCCC-ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGGD-GLIGELCNGFNLLMDADKGVITFESLKKNSAL 54 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 54 (243)
.+|.|+.++|..++ ..+... -..+++..+|..+|.+++|+|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999 443334 66778999999999999999999999998864
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.54 E-value=1.6e-07 Score=49.16 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.2
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHH-HcC
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSA-LLG 56 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~-~~g 56 (243)
+++.+|+.||+|++|+|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 565
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.45 E-value=2.5e-07 Score=47.35 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 64 DLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 64 e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
|++++|+.+|.|+||+|+++||..++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 6889999999999999999999998875
No 47
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.44 E-value=1.7e-06 Score=58.75 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=58.3
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
+.....+...|+..|. ++|+|+.++.+.++...+ ++.+.+.+++...|.|++|+++++||+-++.-
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 5667889999999986 589999999999999977 99999999999999999999999999876653
No 48
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.43 E-value=8.4e-07 Score=73.21 Aligned_cols=91 Identities=19% Similarity=0.287 Sum_probs=69.1
Q ss_pred CCCcccHHHHHHHHHhhcCCCC----h-------HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCC---CCCCHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGGDG----L-------IGELCNGFNLLMDADKGVITFESLKKNSALLGL---QDLSDDDLKC 67 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~----~-------~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~---~~~~~~e~~~ 67 (243)
++|.+.|.+.+..+.......+ - ...+..+|+.+|.|++|.|+.+||+.+.+.++. ..++++++.+
T Consensus 512 ~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~ 591 (631)
T KOG0377|consen 512 DDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE 591 (631)
T ss_pred cCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH
Confidence 3566777776665542211111 0 123666899999999999999999999987641 4789999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 68 MLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 68 ~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
+-+.+|.++||.|++.||+.++.-.
T Consensus 592 la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 592 LARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHhhccCCCCcccHHHHHHHHhhh
Confidence 9999999999999999999887643
No 49
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.38 E-value=2.2e-06 Score=70.26 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQD-LSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSNL 103 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~-~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 103 (243)
..+++..|+.||.+++|.++.+++.+.+..+. .+ .....+..++...|.|.||.++|+||.+.+.... ..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~-~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E-------~~l 84 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD-HPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE-------LEL 84 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcC-CCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH-------HHH
Confidence 35788899999999999999999999999987 55 5566678899999999999999999998876432 234
Q ss_pred HHhhhhcCCCCCCcCCC
Q 048355 104 MLLFQFTDISQRPLLSG 120 (243)
Q Consensus 104 ~~~~~~~d~~~~~~~~~ 120 (243)
...|...|..+++..+.
T Consensus 85 ~~~F~~iD~~hdG~i~~ 101 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDP 101 (463)
T ss_pred HHHHhhhccccCCccCH
Confidence 55888888888876543
No 50
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1e-06 Score=70.12 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCCcccHHHHHHHHHhhcCCC-ChH---HHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCC
Q 048355 2 AAASRNFEDCLPLMANKLGGD-GLI---GELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCD 77 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~-~~~---~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~ 77 (243)
.+|.|+++||+.-|....... ++. .+-...|..+|+|+||+++.+|+++.+---+ ....+.|++.++.+.|.|+|
T Consensus 213 ~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~-~d~A~~EA~hL~~eaD~dkD 291 (325)
T KOG4223|consen 213 GDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSE-QDHAKAEARHLLHEADEDKD 291 (325)
T ss_pred CCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCC-ccHHHHHHHHHhhhhccCcc
Confidence 479999999999887655321 111 2334567788999999999999998886666 67788999999999999999
Q ss_pred CcccHHHHHH
Q 048355 78 GALNQMEFCV 87 (243)
Q Consensus 78 g~i~~~ef~~ 87 (243)
|+++++|-+.
T Consensus 292 ~kLs~eEIl~ 301 (325)
T KOG4223|consen 292 GKLSKEEILE 301 (325)
T ss_pred ccccHHHHhh
Confidence 9999999764
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.23 E-value=2.2e-06 Score=42.23 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=20.3
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHH
Q 048355 28 LCNGFNLLMDADKGVITFESLKKNS 52 (243)
Q Consensus 28 ~~~~F~~~D~~~~G~i~~~el~~~l 52 (243)
|+.+|+.+|.|+||.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678888888888988888888753
No 52
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.21 E-value=6.3e-06 Score=47.44 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=40.8
Q ss_pred ceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 42 VITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 42 ~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
+++.+|++.+|+.+. ..+.+..+..+|+..|..++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 478899999999999 88999999999999999999999999999988754
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.12 E-value=3.2e-05 Score=58.19 Aligned_cols=90 Identities=22% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhcCC-CCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCc-ccHHHHHHHHHhhCcchhhhhhH
Q 048355 25 IGELCNGFNLLMDA-DKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGA-LNQMEFCVLMFRLSPELMEASSN 102 (243)
Q Consensus 25 ~~~~~~~F~~~D~~-~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~ 102 (243)
.+.+...|..+|.+ ++|+|+.+||..+....- ++ -.++++..++.+++|. |+|++|+..+....+.-... ..
T Consensus 32 I~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~--Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~-~K 105 (187)
T KOG0034|consen 32 IERLYERFKKLDRNNGDGYLTKEEFLSIPELAL--NP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR-EK 105 (187)
T ss_pred HHHHHHHHHHhccccccCccCHHHHHHHHHHhc--Cc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH-HH
Confidence 34455555555555 555555555555552211 11 1334444444444444 55555555554433321111 12
Q ss_pred HHHhhhhcCCCCCCcCCC
Q 048355 103 LMLLFQFTDISQRPLLSG 120 (243)
Q Consensus 103 ~~~~~~~~d~~~~~~~~~ 120 (243)
...+|..||..++|..+.
T Consensus 106 l~faF~vYD~~~~G~I~r 123 (187)
T KOG0034|consen 106 LRFAFRVYDLDGDGFISR 123 (187)
T ss_pred HHHHHHHhcCCCCCcCcH
Confidence 333555555555554443
No 54
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.09 E-value=1.3e-05 Score=75.01 Aligned_cols=93 Identities=19% Similarity=0.314 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCC--HH-----HHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchh
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLS--DD-----DLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELM 97 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~--~~-----e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 97 (243)
..++.-+|+.||++.+|.++.++|+.+|+.+| +++| ++ ++++++..+|++.+|+|+..+|+.+|........
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcC-CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 34667789999999999999999999999999 7663 33 7899999999999999999999999987655544
Q ss_pred hhhhHHHHhhhhcCCCCCCcCC
Q 048355 98 EASSNLMLLFQFTDISQRPLLS 119 (243)
Q Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~ 119 (243)
-+++.+-.+|...+. |.|+..
T Consensus 2331 ~s~~eIE~AfraL~a-~~~yvt 2351 (2399)
T KOG0040|consen 2331 LSSEEIEDAFRALDA-GKPYVT 2351 (2399)
T ss_pred cchHHHHHHHHHhhc-CCcccc
Confidence 455666678888877 776643
No 55
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.07 E-value=1.3e-05 Score=67.17 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=48.7
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
......+..+|+.||.+++|+|+.+||. + ++.+|..+|.|+||.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~------~--------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWL------G--------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHH------H--------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3345678999999999999999999983 2 568899999999999999999998765
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.07 E-value=6.7e-06 Score=51.14 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHhhcCC---CChHHHHHHHHhhhcCCCCCceeHHHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGG---DGLIGELCNGFNLLMDADKGVITFESLKKNS 52 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l 52 (243)
.+|.|+.+||..++...... ....+.+..+|+.+|+|++|.|+.+||..++
T Consensus 13 ~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 37999999999999876542 2233567778999999999999999998875
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.02 E-value=3.7e-06 Score=69.47 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=65.4
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc------CC---CCCC-----HHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL------GL---QDLS-----DDDLKC 67 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~------g~---~~~~-----~~e~~~ 67 (243)
.+|-|+|.||+=.+.... .+...++-||++||.||+|.|+.+||..+.+.. |+ ..++ .-++..
T Consensus 212 ~~GLIsfSdYiFLlTlLS---~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns 288 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLS---IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS 288 (489)
T ss_pred CCCeeeHHHHHHHHHHHc---cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence 468899999987665442 344568899999999999999999998876432 20 0111 112322
Q ss_pred HH--HhcCCCCCCcccHHHHHHHHHhhCcchh
Q 048355 68 ML--KEGDFDCDGALNQMEFCVLMFRLSPELM 97 (243)
Q Consensus 68 ~~--~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 97 (243)
.+ .-+..+++++++++||.+++..+..+++
T Consensus 289 aL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil 320 (489)
T KOG2643|consen 289 ALLTYFFGKRGNGKLSIDEFLKFQENLQEEIL 320 (489)
T ss_pred hHHHHhhccCCCccccHHHHHHHHHHHHHHHH
Confidence 22 2367899999999999999988765543
No 58
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.01 E-value=1.1e-05 Score=64.24 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=76.7
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCCCCCHHHHHHHHHhcCCCCCCcc
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL-GLQDLSDDDLKCMLKEGDFDCDGAL 80 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~e~~~~~~~~d~~~~g~i 80 (243)
.+|.+||.|.+..++....++...+-|+-+|+.|+.+.||+++.++|--+++.. | +.+-.+--+|...+...+|+|
T Consensus 272 ~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg---v~~l~v~~lf~~i~q~d~~ki 348 (412)
T KOG4666|consen 272 TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG---VEVLRVPVLFPSIEQKDDPKI 348 (412)
T ss_pred CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC---cceeeccccchhhhcccCcce
Confidence 368999999999988888777888889999999999999999999999988764 5 555567788999999999999
Q ss_pred cHHHHHHHHHhh
Q 048355 81 NQMEFCVLMFRL 92 (243)
Q Consensus 81 ~~~ef~~~~~~~ 92 (243)
+|++|.++..+-
T Consensus 349 ~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 349 YASNFRKFAATE 360 (412)
T ss_pred eHHHHHHHHHhC
Confidence 999999987754
No 59
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.89 E-value=4.1e-05 Score=64.79 Aligned_cols=71 Identities=27% Similarity=0.326 Sum_probs=60.4
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGL--QDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
.+....+++.|...| |++|+|+..|+..++.+.+. .....+++++++...+.|.+|.|+|+||+.++....
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 344567899999999 99999999999999998761 134588999999999999999999999999877543
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=4.3e-05 Score=61.04 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=79.8
Q ss_pred CCCcccHHHHHHHHHhhc------CCCChH-------HHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCCCCCHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKL------GGDGLI-------GELCNGFNLLMDADKGVITFESLKKNSALL-GLQDLSDDDLKC 67 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~------~~~~~~-------~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~e~~~ 67 (243)
++|.|+|++++..+.... ...+.. ..-.+-|+.-|.|++|.++++||..+|.-- . ..+.+--+.+
T Consensus 126 ~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~-p~M~~iVi~E 204 (325)
T KOG4223|consen 126 KDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEH-PHMKDIVIAE 204 (325)
T ss_pred ccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhc-chHHHHHHHH
Confidence 478999999999876432 111111 123456999999999999999999998421 1 2355555777
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhHH-----HHhhhhcCCCCCCcCCC
Q 048355 68 MLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSNL-----MLLFQFTDISQRPLLSG 120 (243)
Q Consensus 68 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~ 120 (243)
-+...|.|+||+|+++||+.=+-..... ...+.| -.++...|..+.|.+..
T Consensus 205 tl~d~Dkn~DG~I~~eEfigd~~~~~~~--~~epeWv~~Ere~F~~~~DknkDG~L~~ 260 (325)
T KOG4223|consen 205 TLEDIDKNGDGKISLEEFIGDLYSHEGN--EEEPEWVLTEREQFFEFRDKNKDGKLDG 260 (325)
T ss_pred HHhhcccCCCCceeHHHHHhHHhhccCC--CCCcccccccHHHHHHHhhcCCCCccCH
Confidence 8889999999999999998666543321 111221 24777788888888765
No 61
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.75 E-value=1.1e-05 Score=55.75 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCV 87 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~ 87 (243)
...+...|..+|.|+||.++..|++.+...+. ..+.-+...+...|.|+||.|+..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 35678889999999999999999998876543 5555689999999999999999999864
No 62
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.70 E-value=4.9e-05 Score=37.35 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 65 LKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 65 ~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
++.+|+.+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998753
No 63
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.69 E-value=0.00011 Score=48.45 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhhcCCCChH-HHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLI-GELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~-~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
.+|.|+..||..++...++..-.. +.+.+.++.+|.|+||.|+.+||..++..+.
T Consensus 22 ~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 22 GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 468899999999998744432223 6899999999999999999999999887653
No 64
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.66 E-value=6.3e-05 Score=62.82 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH-------cCCCCCC-HHHHHHHHHhcC
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAL-------LGLQDLS-DDDLKCMLKEGD 73 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-------~g~~~~~-~~e~~~~~~~~d 73 (243)
.+|+|||++|+-.+-... +.....-+.-+|+.+|.+++|.|+..|++.++.. .|-+.++ ++-+.+++..+.
T Consensus 328 ~eGrmdykdFv~FilA~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvk 406 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVK 406 (493)
T ss_pred ecCcccHHHHHHHHHHhc-cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhC
Confidence 468999999998664432 2455567999999999999999999999887653 2312333 444678888888
Q ss_pred CCCCCcccHHHHHH
Q 048355 74 FDCDGALNQMEFCV 87 (243)
Q Consensus 74 ~~~~g~i~~~ef~~ 87 (243)
+...++|+.++|..
T Consensus 407 P~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 407 PEDENKITLQDLKG 420 (493)
T ss_pred ccCCCceeHHHHhh
Confidence 88889999999975
No 65
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.64 E-value=0.00025 Score=42.66 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=42.3
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNS 52 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l 52 (243)
.+|.|++.+|..++..... ..+.+.+..+|+.+|.+++|.|+.++|..++
T Consensus 13 ~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 13 GDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4689999999999876543 4566788999999999999999999998765
No 66
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.52 E-value=0.00039 Score=45.79 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCcccHHHHHHHHHhh--cCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 3 AASRNFEDCLPLMANK--LGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
.|.|+.+||..++... +....+.+++.+.|+.+|.|++|.|+.+||..++..+.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 5699999999999642 34445678999999999999999999999998887653
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.47 E-value=0.0003 Score=46.42 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHHhhcCCCCh----HHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 3 AASRNFEDCLPLMANKLGGDGL----IGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~----~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+|.|+.+||..++....+.... .+++..+|+.+|.+++|.|+.+||..++..+
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5789999999999754332222 6789999999999999999999999988654
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.43 E-value=0.0002 Score=37.18 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 64 DLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 64 e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
+++.+|+.+|.|++|.|+++||..++.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4788999999999999999999999873
No 69
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.40 E-value=0.0007 Score=45.14 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=43.9
Q ss_pred CC-cccHHHHHHHHHhhc----CCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 3 AA-SRNFEDCLPLMANKL----GGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 3 ~g-~i~f~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
+| .|+..|+..++.... .......++.++++.+|.|++|.|+.+||..++..+.
T Consensus 25 dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 25 DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 45 599999999996532 2233567899999999999999999999999987654
No 70
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.34 E-value=0.00089 Score=44.12 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=44.0
Q ss_pred CC-cccHHHHHHHHHh----hcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 3 AA-SRNFEDCLPLMAN----KLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 3 ~g-~i~f~ef~~~~~~----~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+| .|+.+|+..+|.. ........+++.++++.+|+|++|.|+.+||..++..+
T Consensus 23 dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 23 DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 56 5999999999986 23334566789999999999999999999998888654
No 71
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.31 E-value=0.00036 Score=46.66 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=44.4
Q ss_pred CCcccHHHHHHHHHhhc----CCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 3 AASRNFEDCLPLMANKL----GGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
+|.|+.+|+..++.... ....+.+++..+|+.+|.+++|.|+.+||..++..++
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 58999999999886522 2233557899999999999999999999999987765
No 72
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00069 Score=45.83 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHc------CCC---CCCHHHHHHHHH----hcCCCCCCcccHHHHHHH
Q 048355 30 NGFNLLMDADKGVITFESLKKNSALL------GLQ---DLSDDDLKCMLK----EGDFDCDGALNQMEFCVL 88 (243)
Q Consensus 30 ~~F~~~D~~~~G~i~~~el~~~l~~~------g~~---~~~~~e~~~~~~----~~d~~~~g~i~~~ef~~~ 88 (243)
.-|++.|-|++|+++--|+..+++.. |.+ -+++.|++.++. .-|.|+||.|+|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 35899999999999999999888743 311 145777766654 567889999999999863
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.30 E-value=0.0013 Score=37.96 Aligned_cols=50 Identities=12% Similarity=-0.042 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 5 SRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 5 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+++|+|-..++...-- .-..+....+|+..|++++|.+..+|+.++++.+
T Consensus 1 kmsf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3678887777764432 3345678889999999999999999999998764
No 74
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.26 E-value=0.00044 Score=34.41 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHH
Q 048355 28 LCNGFNLLMDADKGVITFESLKKNSAL 54 (243)
Q Consensus 28 ~~~~F~~~D~~~~G~i~~~el~~~l~~ 54 (243)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777777777777777777776653
No 75
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.25 E-value=0.0011 Score=43.84 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHhhcC----CCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 4 ASRNFEDCLPLMANKLG----GDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 4 g~i~f~ef~~~~~~~~~----~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
+.|+.+||..++....+ ......++.++++.+|.|+||.|+.+||..++..+.
T Consensus 26 ~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred CeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 37999999999987642 233456899999999999999999999999887653
No 76
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.23 E-value=0.0014 Score=40.52 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
.+|.|+.+|+..++... ..+.+.+..+|+.+|.+++|.|+.+|+..++...
T Consensus 12 ~~G~i~~~el~~~l~~~---g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 12 GDGLISGDEARPFLGKS---GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCcCcHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 36899999999988654 2256789999999999999999999999887643
No 77
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.20 E-value=0.0012 Score=43.52 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=43.6
Q ss_pred CCCcccHHHHHHHHHhhcCC----CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 2 AAASRNFEDCLPLMANKLGG----DGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~----~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
.+|.|+.++|..++....+. ....+++..+++.+|.+++|.|+.++|..++..+
T Consensus 23 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 23 DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 46899999999998653221 1246789999999999999999999999988654
No 78
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.10 E-value=0.0021 Score=43.08 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=42.5
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAL 54 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 54 (243)
.+|.|+++++..++... .-+.+++.++|+.+|.+++|.|+.+||..++..
T Consensus 23 ~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 23 QDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 36899999999998763 234578999999999999999999999998864
No 79
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.10 E-value=0.0034 Score=59.62 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=26.2
Q ss_pred eeHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEeccc
Q 048355 189 FELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKI 226 (243)
Q Consensus 189 ~~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~ 226 (243)
+++.++.. .+.+.++||+|+ ..+|..||||++...
T Consensus 683 ~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~ 726 (968)
T PLN00113 683 ITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDV 726 (968)
T ss_pred hhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCC
Confidence 44555544 477889999998 367899999999643
No 80
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.03 E-value=0.0019 Score=54.69 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=73.3
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCC-C----CCCHHHHHHHHHhcCCCC
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGL-Q----DLSDDDLKCMLKEGDFDC 76 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~-~----~~~~~e~~~~~~~~d~~~ 76 (243)
.+|-|+|+||+..=... ..+ ......+|+.||+.++|.+|.+++.+++....+ + +.+.+-+.. .+..+.
T Consensus 87 KDglisf~eF~afe~~l-C~p--Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~ 160 (694)
T KOG0751|consen 87 KDGLISFQEFRAFESVL-CAP--DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIR 160 (694)
T ss_pred ccccccHHHHHHHHhhc-cCc--hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHH
Confidence 36889999998754333 223 346788999999999999999999999987531 1 122222333 334445
Q ss_pred CCcccHHHHHHHHHhhCcchhhhhhHHHHhhhhcCCCCCCcCCC
Q 048355 77 DGALNQMEFCVLMFRLSPELMEASSNLMLLFQFTDISQRPLLSG 120 (243)
Q Consensus 77 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (243)
.-.++|.||.+++...-.+ .-...|...|..+|+....
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E------~~~qafr~~d~~~ng~is~ 198 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLE------HAEQAFREKDKAKNGFISV 198 (694)
T ss_pred HHhccHHHHHHHHHHHHHH------HHHHHHHHhcccCCCeeee
Confidence 5679999999998865322 1345777888888877554
No 81
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.01 E-value=0.0019 Score=54.29 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=62.3
Q ss_pred HhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHh----cCCCCCCcccHHHHHHHHHhhCcchhhhhhHHHHhh
Q 048355 32 FNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKE----GDFDCDGALNQMEFCVLMFRLSPELMEASSNLMLLF 107 (243)
Q Consensus 32 F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~----~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 107 (243)
|-.+|+|+||.|+.++|+..-.. -++.--++++|.+ .-...+|+++|++|+.++........+ +.+.=+|
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~--~SleYwF 357 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTP--ASLEYWF 357 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCc--cchhhhe
Confidence 66789999999999999886543 3556668999983 334568999999999999876544323 3333379
Q ss_pred hhcCCCCCCcCC
Q 048355 108 QFTDISQRPLLS 119 (243)
Q Consensus 108 ~~~d~~~~~~~~ 119 (243)
...|+.|+|.+.
T Consensus 358 rclDld~~G~Lt 369 (493)
T KOG2562|consen 358 RCLDLDGDGILT 369 (493)
T ss_pred eeeeccCCCccc
Confidence 999999999864
No 82
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.99 E-value=0.0022 Score=42.61 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=43.3
Q ss_pred CC-cccHHHHHHHHHhhcC----CCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 3 AA-SRNFEDCLPLMANKLG----GDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 3 ~g-~i~f~ef~~~~~~~~~----~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
+| .|+..|+..++...+. ...+.+++.++|+.+|++++|.|+.+||..++..+.
T Consensus 24 ~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 24 DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 57 5999999999964221 123557899999999999999999999999887653
No 83
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.001 Score=55.38 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=33.2
Q ss_pred eeHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 43 ITFESLKKNSAL-LGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 43 i~~~el~~~l~~-~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
|+..+|+++... .| .++++.-++-+|..+|.|+||.++++||+.++...
T Consensus 405 i~~~~f~raa~~vtG-veLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 405 IDEKTFQRAAKVVTG-VELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred CCHHHHHHHHHHhcC-cccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 444444444332 24 44555555566778899999999999999999864
No 84
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.93 E-value=0.0028 Score=43.99 Aligned_cols=46 Identities=11% Similarity=-0.038 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHH
Q 048355 2 AAASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNS 52 (243)
Q Consensus 2 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l 52 (243)
.+|.|+.+|...+. . ......+...|+.+|.|+||+||.+|+..++
T Consensus 61 ~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 61 YDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 47889999998765 1 2345678889999999999999999999998
No 85
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.87 E-value=0.0037 Score=40.62 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=53.3
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhhC
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALL-GLQ-DLSDDDLKCMLKEGDFD----CDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~-~~~~~e~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~ 93 (243)
++..+|+.|-. +.+.||.++|.++|+.- + . ..+.+++..++..+..+ ..+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~-~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQG-EPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS--TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhc-cccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 47789999955 88999999999999754 5 4 57899999999987544 468999999999998653
No 86
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.77 E-value=0.0011 Score=51.02 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHH-HcCCCCC--CHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSA-LLGLQDL--SDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~-~~g~~~~--~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
...+...|+..|.+.||+|+..|+++.+. +.. +.+ +.++-+..|+..|+|+||.|+++||..-+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImekta-EHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTA-EHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHH-HHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 35788999999999999999999988764 332 222 223445567889999999999999964443
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.76 E-value=0.002 Score=31.87 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 64 DLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 64 e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
+++.+|..+|.+++|.|++.||..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678899999999999999999988764
No 88
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.72 E-value=0.0078 Score=39.59 Aligned_cols=54 Identities=20% Similarity=0.082 Sum_probs=43.8
Q ss_pred CCcccHHHHHHHHHhhcC----CCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC
Q 048355 3 AASRNFEDCLPLMANKLG----GDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG 56 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~----~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g 56 (243)
.+.++..||..++...++ .......+.++|+.+|.|+||.|+.+||-.++..+.
T Consensus 21 ~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 21 KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 457889999998865543 345567899999999999999999999998886653
No 89
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.43 E-value=0.021 Score=48.06 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCCCCC------------------------------------------
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALL-GLQDLS------------------------------------------ 61 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~------------------------------------------ 61 (243)
..++...|+.+|.+++|+|+...-..++... | .++|
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~-L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITG-LNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhc-CCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 3568889999999999999999988777642 2 1221
Q ss_pred ----HHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchh--hhhhHHHHhhhhcCCCCCCc
Q 048355 62 ----DDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELM--EASSNLMLLFQFTDISQRPL 117 (243)
Q Consensus 62 ----~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~ 117 (243)
...++.+|+..|.|+.|.|+.+||..++.-...... -...+........|+.++|.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~ 603 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGK 603 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCc
Confidence 122455677889999999999999888765433211 13345556677777777655
No 90
>PF14658 EF-hand_9: EF-hand domain
Probab=96.18 E-value=0.038 Score=33.94 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCC-CceeHHHHHHHHHH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADK-GVITFESLKKNSAL 54 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-G~i~~~el~~~l~~ 54 (243)
+|.|.-.+...++...-....+..+++...+.+|+++. |.|+.+.|..+|+.
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 57777777777776655533455689999999999997 99999999999875
No 91
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.014 Score=49.59 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=58.9
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
++.+.+..-|+.+-.|-.|+|+-.--+.++.+.. ++-.|+..+++..|.|+||.++..||+..+.-
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 4456678889999999999999999999998855 88899999999999999999999999998863
No 92
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.92 E-value=0.012 Score=55.66 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=51.8
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 31 GFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 31 ~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
.|+.||+|+.|.|+..+|..+|.... ..++.|++-++.-...|.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 47889999999999999999997654 68999999999999999999999999987665
No 93
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.70 E-value=0.043 Score=39.05 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=61.1
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhh-H--HHHh
Q 048355 31 GFNLLMDADKGVITFESLKKNSALLGLQD-LSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASS-N--LMLL 106 (243)
Q Consensus 31 ~F~~~D~~~~G~i~~~el~~~l~~~g~~~-~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~-~--~~~~ 106 (243)
+-+.|-.||.|.++.++|.+++..+. +- +-+-.+...|+.+|.|+|+.|.-.+....+.+++.+-+.... . -...
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~s-E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFS-EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHH-hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 34455689999999999999998775 32 222335667888999999999999999988887654332222 1 1235
Q ss_pred hhhcCCCCCCcCC
Q 048355 107 FQFTDISQRPLLS 119 (243)
Q Consensus 107 ~~~~d~~~~~~~~ 119 (243)
....|..|.+.+.
T Consensus 155 ieEAD~DgDgkl~ 167 (189)
T KOG0038|consen 155 IEEADLDGDGKLS 167 (189)
T ss_pred HHHhcCCCCCccc
Confidence 5666777776654
No 94
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.58 E-value=0.018 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC-------CCCcccHHHHHH
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFD-------CDGALNQMEFCV 87 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~-------~~g~i~~~ef~~ 87 (243)
+..+++.++|+.+ .++.++||.+||++.|..- +++.++.++..- ..|.++|..|+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe--------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE--------QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC--------CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH--------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3457999999999 8899999999999976322 235555544322 126788988864
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.023 Score=50.93 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
.-..+..|..+|+...|++|-..-+.+|...+ ++...+-.++..-|.|+||+++-+||+-.+.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34688899999999999999999999998876 8999999999999999999999999986554
No 96
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=95.17 E-value=0.079 Score=45.28 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=23.0
Q ss_pred CccccCC-------CCCCcEEEEEEecccccccHHHHHHHHHH
Q 048355 205 NKLGEEH-------TSGEQEISVKRLSKISEQGLKELKNEVIL 240 (243)
Q Consensus 205 n~iG~G~-------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~ 240 (243)
-+||+|+ .-+++.||||.+.. +...+|.+|=.+
T Consensus 216 eli~~Grfg~V~KaqL~~~~VAVKifp~---~~kqs~~~Ek~I 255 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLDNRLVAVKIFPE---QEKQSFQNEKNI 255 (534)
T ss_pred HHhhcCccceeehhhccCceeEEEecCH---HHHHHHHhHHHH
Confidence 3789998 22569999999953 344568777554
No 97
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.11 E-value=0.15 Score=37.38 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=49.2
Q ss_pred HHHHhhh---cCCCCCceeHHHHHHHHHHcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 29 CNGFNLL---MDADKGVITFESLKKNSALLGL--QDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 29 ~~~F~~~---D~~~~G~i~~~el~~~l~~~g~--~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
+.+|..| -+.+...++...|..+++..++ ..++..+++-+|..+...+...|+|++|..+|..+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3445544 4666778999999999998753 468999999999998766667899999999987654
No 98
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.09 E-value=0.048 Score=47.45 Aligned_cols=74 Identities=22% Similarity=0.167 Sum_probs=64.4
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhh
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEAS 100 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 100 (243)
...+.-|..+|.|+.|+++.++..++|+..+ .+.+++.+.+.+++.|.+.+|.+...||.+++.....+..+..
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~ 666 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGS 666 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHH
Confidence 4456679999999999999999999999988 7899999999999999988999999999999887655554443
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.75 E-value=0.21 Score=36.84 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCC---------------------------------------------
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQD--------------------------------------------- 59 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~--------------------------------------------- 59 (243)
...|++-...||+|+||.|..-|--.-++.+| .+
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLG-f~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALG-FGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhC-CCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 34677777889999999999999766666655 33
Q ss_pred --------CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 60 --------LSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 60 --------~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
+..+..+++|..++....+.+++.|...++...
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 124566777777776666677777777777654
No 100
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.65 E-value=0.15 Score=34.61 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSAL 54 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 54 (243)
+|.|+-++-..++.+. .-+.+.+..+|.+-|.|++|+++.+||.-+|..
T Consensus 23 ~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 23 DGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4667777766655433 445688999999999999999999999887754
No 101
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.51 E-value=0.072 Score=46.99 Aligned_cols=78 Identities=24% Similarity=0.248 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 048355 6 RNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEF 85 (243)
Q Consensus 6 i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef 85 (243)
|+|..|..+.....+-.....-+.+.|+.+|..++|.|+..++...|..+. ..--.+.+.-+++.+|++.+ ..+.+|-
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 677777777765554443344577889999999999999999999888775 44444556777888888887 7777776
No 102
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.24 E-value=0.032 Score=45.07 Aligned_cols=62 Identities=15% Similarity=-0.015 Sum_probs=50.2
Q ss_pred HHHHHHhhhcCCCCCceeHHHH---HHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 27 ELCNGFNLLMDADKGVITFESL---KKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el---~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
-+.+-|..+|+|.++.|...|. +.++.... -+..-.+++++..|.|+|.+|+++|+..-+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4667799999999999999995 45554433 44556788999999999999999999987764
No 103
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.93 E-value=0.19 Score=41.09 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
...+-+.|..+|.+.||.++..||..+. ..-.+.-|+.+|...|...||.|+-.|+..-+...
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh-----ccCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 3578899999999999999999998876 23345568899999999999999999998877654
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=93.88 E-value=0.61 Score=41.75 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCcccHHHHHHHHHhhc-CCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCC-CCCHHHHHHHHHhcC-------
Q 048355 3 AASRNFEDCLPLMANKL-GGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQ-DLSDDDLKCMLKEGD------- 73 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~-~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~-~~~~~e~~~~~~~~d------- 73 (243)
.|.++|++|........ ....+..++..+|..|-.++ +.++.++|..+|....-+ ..+.+++..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 46899999987665443 22346789999999996544 689999999999875303 366777777765431
Q ss_pred CCCCCcccHHHHHHHHHh
Q 048355 74 FDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 74 ~~~~g~i~~~ef~~~~~~ 91 (243)
......++++.|..++..
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112345899999998874
No 105
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.49 E-value=0.31 Score=47.39 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=62.3
Q ss_pred CCcccHHHHHHHHHhhc------CCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCC
Q 048355 3 AASRNFEDCLPLMANKL------GGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGL-QDLSDDDLKCMLKEGDFD 75 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~------~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~-~~~~~~e~~~~~~~~d~~ 75 (243)
+|.+|+.+|...+.... ....+..++.+...+.|++.+|+|+.+|...+|-.--- .-.+.++|+..|+.++.
T Consensus 2267 ~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a- 2345 (2399)
T KOG0040|consen 2267 NGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA- 2345 (2399)
T ss_pred ccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-
Confidence 68999999998876331 12334458999999999999999999999888854210 23566789999999998
Q ss_pred CCCcccHHHHH
Q 048355 76 CDGALNQMEFC 86 (243)
Q Consensus 76 ~~g~i~~~ef~ 86 (243)
+..+|+.++..
T Consensus 2346 ~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2346 GKPYVTKEELY 2356 (2399)
T ss_pred CCccccHHHHH
Confidence 45577776653
No 106
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=93.44 E-value=0.63 Score=35.23 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=57.5
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHH-HHHHHH--hcCCCCCCc
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDD-LKCMLK--EGDFDCDGA 79 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e-~~~~~~--~~d~~~~g~ 79 (243)
+|.||+-|...+|.+.-. +.+.-.++.+.+..|.|.+|+||..|+-=+++....-.+..+. +..+-+ +.|....|.
T Consensus 113 DgfIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV 191 (244)
T KOG0041|consen 113 DGFIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEGV 191 (244)
T ss_pred cccccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchhhhhh
Confidence 689999999888866543 4555679999999999999999999998888653102344333 444433 367666666
Q ss_pred ccHHHHH
Q 048355 80 LNQMEFC 86 (243)
Q Consensus 80 i~~~ef~ 86 (243)
..=..|.
T Consensus 192 ~GAknFF 198 (244)
T KOG0041|consen 192 SGAKNFF 198 (244)
T ss_pred hhHHHHH
Confidence 5555553
No 107
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.30 E-value=0.22 Score=38.78 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCV 87 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~ 87 (243)
..++.=..+|.++||.+|.+||..++.-+. ..++..++..++...|.+++.+++.+|.+.
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n-~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQN-FRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchh-hhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 344555678999999999999999976666 567778899999999999999999999864
No 108
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=93.26 E-value=0.52 Score=40.57 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHh---hhcCCCCCceeHHHHHHHH-HHcCCCCCCHHHHHHHHHh-cCCCCCCcccHH
Q 048355 9 EDCLPLMANKLGGDGLIGELCNGFN---LLMDADKGVITFESLKKNS-ALLGLQDLSDDDLKCMLKE-GDFDCDGALNQM 83 (243)
Q Consensus 9 ~ef~~~~~~~~~~~~~~~~~~~~F~---~~D~~~~G~i~~~el~~~l-~~~g~~~~~~~e~~~~~~~-~d~~~~g~i~~~ 83 (243)
-++..............++++..|- ..|.++.-+++.++|.+-. ..++ ++-..+++..+... .|.-+||-|+|+
T Consensus 16 ~~a~~a~~v~~lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~-e~~~n~~~v~Lla~iaD~tKDglisf~ 94 (694)
T KOG0751|consen 16 YEAFRAFKVELLKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYN-ESNFNDKIVRLLASIADQTKDGLISFQ 94 (694)
T ss_pred HHHHHHhcHHhhccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcc-cccCChHHHHHHHhhhhhcccccccHH
Confidence 3444444433333445556666644 4477778888888875543 3345 44445555555544 466677888888
Q ss_pred HHHHHHHhhCcchhhhhhHHHHhhhhcCCCCCCcCCC
Q 048355 84 EFCVLMFRLSPELMEASSNLMLLFQFTDISQRPLLSG 120 (243)
Q Consensus 84 ef~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (243)
||..+ ..... .++ .....+|..+|..+++...|
T Consensus 95 eF~af-e~~lC--~pD-al~~~aFqlFDr~~~~~vs~ 127 (694)
T KOG0751|consen 95 EFRAF-ESVLC--APD-ALFEVAFQLFDRLGNGEVSF 127 (694)
T ss_pred HHHHH-Hhhcc--Cch-HHHHHHHHHhcccCCCceeh
Confidence 88653 32221 121 23345777777777766544
No 109
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=93.25 E-value=0.086 Score=47.92 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=36.6
Q ss_pred eeHHHHHHHhcCCC---------ccCccccCC----------CCC--CcEEEEEEecccccc-cHHHHHHHHHHhcC
Q 048355 189 FELAAISNATDNFS---------INNKLGEEH----------TSG--EQEISVKRLSKISEQ-GLKELKNEVILFSK 243 (243)
Q Consensus 189 ~~~~~i~~aT~~f~---------~~n~iG~G~----------l~~--g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg~ 243 (243)
++|+|=-+|...|. -+.+||.|- +++ ...||||-|+..... ...+|..|..++|+
T Consensus 610 ~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQ 686 (996)
T KOG0196|consen 610 HTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQ 686 (996)
T ss_pred ccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhccc
Confidence 56665444444442 346899986 444 347999999765432 34679999999985
No 110
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.08 E-value=0.26 Score=40.08 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=54.1
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNSALL-GLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
+.+...|.+||.+++|.++..|-...+.-+ | ...+.+-++-.|+.++.+.||.+.-.+|--+++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~-p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeC-CCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 568889999999999999998877777655 5 5677788899999999999999998888766654
No 111
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=92.03 E-value=0.18 Score=44.55 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=30.2
Q ss_pred ccccCC--------CCCCcEEEEEEeccccccc-HHHHHHHHHHhcC
Q 048355 206 KLGEEH--------TSGEQEISVKRLSKISEQG-LKELKNEVILFSK 243 (243)
Q Consensus 206 ~iG~G~--------l~~g~~vAVK~l~~~~~~~-~~~F~~Ev~~Lg~ 243 (243)
.||+|- +.++..||||.|+.....+ .++|..|+++|++
T Consensus 545 kiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsq 591 (807)
T KOG1094|consen 545 KIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSR 591 (807)
T ss_pred hhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhc
Confidence 688887 4566899999998765443 4899999999985
No 112
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.68 E-value=0.3 Score=39.36 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHH----c-CCCCCCHHHHH-----------HHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 31 GFNLLMDADKGVITFESLKKNSAL----L-GLQDLSDDDLK-----------CMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 31 ~F~~~D~~~~G~i~~~el~~~l~~----~-g~~~~~~~e~~-----------~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
.|.+.|.++||+++-.||..+++. + . ..-.++++. .+++..|.|.|..|+.+||++.-.+.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 366778999999999999988864 1 2 222233332 34677899999999999998765543
No 113
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.89 E-value=0.71 Score=42.82 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=55.4
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHH-----HHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDD-----DLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~-----e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
...+++..|..+|+...|..+.+++..++..+| .+..++ ++-.++...|.+..|+++|.+|...+.+-.
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLG-YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 346899999999999999999999999999999 766642 233455556667779999999999987643
No 114
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=90.82 E-value=1.9 Score=36.75 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHH-----HcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhh
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSA-----LLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELME 98 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~-----~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 98 (243)
..+.+.+.-+.|-.| ...|..+++ ..| ....+.+++.+|+.+|.++||.|+.+||..
T Consensus 297 a~ekl~egi~~F~~d------~~~L~~~i~~~~~~~~~-~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------- 358 (391)
T PRK12309 297 ASEKLDEGIKGFSKA------LETLEKLLAHRLARLEG-GEAFTHAAQEIFRLYDLDGDGFITREEWLG----------- 358 (391)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-----------
Confidence 345566665555443 233444443 235 667788899999999999999999999952
Q ss_pred hhhHHHHhhhhcCCCCCCcCC
Q 048355 99 ASSNLMLLFQFTDISQRPLLS 119 (243)
Q Consensus 99 ~~~~~~~~~~~~d~~~~~~~~ 119 (243)
....|..+|.+++|...
T Consensus 359 ----~~~~F~~~D~d~DG~Is 375 (391)
T PRK12309 359 ----SDAVFDALDLNHDGKIT 375 (391)
T ss_pred ----HHHHHHHhCCCCCCCCc
Confidence 12367777777776543
No 115
>PHA02988 hypothetical protein; Provisional
Probab=90.18 E-value=0.42 Score=38.51 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=35.8
Q ss_pred CCceeHHHHHHHhcCCCccCccccCC-------CCCCcEEEEEEeccccccc---HHHHHHHHHHhcC
Q 048355 186 LPLFELAAISNATDNFSINNKLGEEH-------TSGEQEISVKRLSKISEQG---LKELKNEVILFSK 243 (243)
Q Consensus 186 ~~~~~~~~i~~aT~~f~~~n~iG~G~-------l~~g~~vAVK~l~~~~~~~---~~~F~~Ev~~Lg~ 243 (243)
.+.++..+| ...+...||.|+ .-+|+.||||++....... .+.|.+|+++|.+
T Consensus 12 ~~~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~ 74 (283)
T PHA02988 12 IKCIESDDI-----DKYTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRR 74 (283)
T ss_pred ceecCHHHc-----CCCCCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHh
Confidence 445566676 233346889988 3478999999996543333 3668899998753
No 116
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=89.79 E-value=0.67 Score=42.00 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=47.3
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
-+...|+..|++++|.++..+...+++.+. ..+.+..+..++++.+.-.++++...+|..+....
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 466678888888888888888888887776 66777777777777766666777777776665543
No 117
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=0.43 Score=39.48 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHH-HhcCCCCCCcccHHHHH
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCML-KEGDFDCDGALNQMEFC 86 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~-~~~d~~~~g~i~~~ef~ 86 (243)
.+.++++++|+.+|+.+.|+|+..-++++++.+. ...++.+.-.+. ..+|+..-|-|-..+|.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N-~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN-RLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc-ccccCHHHHHHhcCccChhhcceEEecccc
Confidence 4457999999999999999999999999999887 555554433333 33555555555444443
No 118
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=0.74 Score=42.17 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=28.4
Q ss_pred ccccCC------------CC--CCcEEEEEEecccccc-cHHHHHHHHHHhcC
Q 048355 206 KLGEEH------------TS--GEQEISVKRLSKISEQ-GLKELKNEVILFSK 243 (243)
Q Consensus 206 ~iG~G~------------l~--~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg~ 243 (243)
.||+|. ++ +.+.||||.|...... ...+|..|++.|+.
T Consensus 493 eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~ 545 (774)
T KOG1026|consen 493 ELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAE 545 (774)
T ss_pred hhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHh
Confidence 688887 22 3468999999765443 67899999998863
No 119
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=88.10 E-value=0.48 Score=38.90 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=37.2
Q ss_pred eHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 190 ELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 190 ~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
+|+|+.+.|.. ++|.|. +.+|...|||.+............+||+++
T Consensus 74 ~F~d~YkLt~e-----~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f 129 (463)
T KOG0607|consen 74 KFEDMYKLTSE-----LLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETF 129 (463)
T ss_pred hHHHHHHhHHH-----HhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHH
Confidence 57888888853 799998 678999999999776444555677899886
No 120
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=87.86 E-value=0.54 Score=41.52 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=28.3
Q ss_pred HhcCCCccCccccCC----C---------------------CCCcEEEEEEecccccccHHHHHHH
Q 048355 197 ATDNFSINNKLGEEH----T---------------------SGEQEISVKRLSKISEQGLKELKNE 237 (243)
Q Consensus 197 aT~~f~~~n~iG~G~----l---------------------~~g~~vAVK~l~~~~~~~~~~F~~E 237 (243)
.+++|...++||+|+ . .++..||||++........++|.+|
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e 208 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKT 208 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhh
Confidence 467899999999999 1 1346799999965443334455543
No 121
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=87.61 E-value=0.099 Score=36.11 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhHHHHhhhhcCCCCCCcCCCcccc
Q 048355 59 DLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSNLMLLFQFTDISQRPLLSGKVWE 124 (243)
Q Consensus 59 ~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 124 (243)
..-...+..+|..+|.|+||.++..|+..+...+ .+..++...++...|..+++.+.-..|.
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l----~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL----MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT----STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH----hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3455678889999999999999999997665433 3345677778888898888765544443
No 122
>PRK09188 serine/threonine protein kinase; Provisional
Probab=87.11 E-value=0.81 Score=38.61 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=30.9
Q ss_pred cCCCccCccccCC---------C-CCCcEEEEEEecccc-----cccHHHHHHHHHHhc
Q 048355 199 DNFSINNKLGEEH---------T-SGEQEISVKRLSKIS-----EQGLKELKNEVILFS 242 (243)
Q Consensus 199 ~~f~~~n~iG~G~---------l-~~g~~vAVK~l~~~~-----~~~~~~F~~Ev~~Lg 242 (243)
.+|....+||+|+ . .+|..||||++.... ......|.+|+++|.
T Consensus 18 ~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~ 76 (365)
T PRK09188 18 ARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALK 76 (365)
T ss_pred CCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHH
Confidence 4477778999999 1 267889999975321 112456999999875
No 123
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.86 E-value=0.57 Score=32.08 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 59 DLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 59 ~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
-+++++.+.++.++-.|..|.+.|.||+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 478999999999999999999999999887763
No 124
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=86.52 E-value=0.86 Score=40.46 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=27.1
Q ss_pred CccccCCC---CCC---cEEEEEEecccccc--cHHHHHHHHHHhc
Q 048355 205 NKLGEEHT---SGE---QEISVKRLSKISEQ--GLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~l---~~g---~~vAVK~l~~~~~~--~~~~F~~Ev~~Lg 242 (243)
..||+|.+ -.| ..||||.|+..... ..+.|.+||..|-
T Consensus 398 ~rIGsGsFGtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lk 443 (678)
T KOG0193|consen 398 ERIGSGSFGTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLK 443 (678)
T ss_pred ceeccccccceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 47999982 223 37999999654333 4578999999874
No 125
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.20 E-value=1.3 Score=36.42 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=64.1
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHcC--CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchhhhhhHH
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNSALLG--LQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELMEASSNL 103 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 103 (243)
..|+.+|+.+-.+.++......+...-..+. +.++-.+++..||..+|.+.|+.++-.|...+..... ..+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn------E~Ci 284 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKN------EACI 284 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCc------hhHH
Confidence 4688899998877777666555544422221 1356789999999999999999999999988766433 3566
Q ss_pred HHhhhhcCCCCCCcCCCccc
Q 048355 104 MLLFQFTDISQRPLLSGKVW 123 (243)
Q Consensus 104 ~~~~~~~d~~~~~~~~~~~~ 123 (243)
..+|...|..-.+...-..|
T Consensus 285 kpFfnsCD~~kDg~iS~~EW 304 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEW 304 (434)
T ss_pred HHHHhhhcccccCccccchh
Confidence 66777776665555544444
No 126
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=85.97 E-value=0.96 Score=37.60 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=38.4
Q ss_pred eHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccc--cccHHHHHHHHHHhc
Q 048355 190 ELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS--EQGLKELKNEVILFS 242 (243)
Q Consensus 190 ~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~--~~~~~~F~~Ev~~Lg 242 (243)
...++..++++|.....||+|+ ..+|+.||||++.... ....+.+..|++++.
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~ 71 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLK 71 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHH
Confidence 3456677888888888999998 3578899999996422 223456788888764
No 127
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=85.27 E-value=1.1 Score=39.72 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccc---cccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKIS---EQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~Lg 242 (243)
+...++||+|| +..|.+||+|...... ....+...+||++-.
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr 73 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHR 73 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHH
Confidence 56678999999 5789999999995432 223456889998754
No 128
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.22 E-value=0.62 Score=39.80 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=22.5
Q ss_pred CccccCCC-------CCCcEEEEEEecccccccHHHHHHHHHH
Q 048355 205 NKLGEEHT-------SGEQEISVKRLSKISEQGLKELKNEVIL 240 (243)
Q Consensus 205 n~iG~G~l-------~~g~~vAVK~l~~~~~~~~~~F~~Ev~~ 240 (243)
..||+|.+ =.|+-||||.++.. .++++.+|-++
T Consensus 217 e~IGkGRyGEVwrG~wrGe~VAVKiF~sr---dE~SWfrEtEI 256 (513)
T KOG2052|consen 217 EIIGKGRFGEVWRGRWRGEDVAVKIFSSR---DERSWFRETEI 256 (513)
T ss_pred EEecCccccceeeccccCCceEEEEeccc---chhhhhhHHHH
Confidence 47888872 24899999999644 34567666554
No 129
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.14 E-value=2.1 Score=39.12 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc---C----CCCCCHHHHHHHHHhcCCC
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL---G----LQDLSDDDLKCMLKEGDFD 75 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~---g----~~~~~~~e~~~~~~~~d~~ 75 (243)
++ ++++||. ....+.+..++-.|.++|. .+|.++.+++..++... + ..+.+.+....++++.|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 8999998 2335677899999999999 99999999998887642 1 0334455567788889999
Q ss_pred CCCcccHHHHHHHHHhh
Q 048355 76 CDGALNQMEFCVLMFRL 92 (243)
Q Consensus 76 ~~g~i~~~ef~~~~~~~ 92 (243)
..|.+.++++..++...
T Consensus 74 ~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQI 90 (646)
T ss_pred ccceeeecchhHHHHhc
Confidence 99999988888777654
No 130
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.03 E-value=8.7 Score=25.29 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHH-------cCCC----CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSAL-------LGLQ----DLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-------~g~~----~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
.++++-.|+.+ .|.+|.++...|..+|.. +| + .-.+..++..|.... ....|+-++|+..+..-.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vg-E~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVG-EGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT--GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhC-ccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 36788999998 888999999998887763 23 2 125677888888752 345799999999888653
No 131
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=84.81 E-value=0.71 Score=36.94 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=39.5
Q ss_pred ceeHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 188 LFELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 188 ~~~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
.+.+.++..++++|.-...||+|+ ..+|+.+|+|.+.... .....+.+|+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~ 69 (286)
T cd06638 7 TIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILK 69 (286)
T ss_pred eEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHH
Confidence 356677788888898888999998 3568899999985432 22356788887653
No 132
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=84.41 E-value=16 Score=34.33 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC---------CCCCCHHHHHHHHHhcCCC
Q 048355 5 SRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLG---------LQDLSDDDLKCMLKEGDFD 75 (243)
Q Consensus 5 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g---------~~~~~~~e~~~~~~~~d~~ 75 (243)
..+|+.|..++....+ ..++.++|..+-.+..-++|.++|.+++..-. ..+.....+..+++.+..+
T Consensus 204 ~f~~e~f~~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~ 279 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPN 279 (1189)
T ss_pred hccHHHHHHHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCc
Confidence 3567777776655433 34788999999999889999999999997531 0346678899999998776
Q ss_pred C----CCcccHHHHHHHHHh
Q 048355 76 C----DGALNQMEFCVLMFR 91 (243)
Q Consensus 76 ~----~g~i~~~ef~~~~~~ 91 (243)
. .|+++-+-|+..+..
T Consensus 280 ~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 280 SDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhhccccchhhhHHHhhC
Confidence 4 589999999998876
No 133
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=4.6 Score=37.08 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=49.9
Q ss_pred HHHHHHHhhhc--CCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 26 GELCNGFNLLM--DADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 26 ~~~~~~F~~~D--~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
++-..-++.|+ +-+.|+|+-+.-+.++-..| ++..-+-+++...|.|+||+++..||--.|.
T Consensus 13 ~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~---LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 13 EERQKHDAQFGQLKPGQGFITGDQARNFFLQSG---LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHHHHHHhccCCCCCccchHhhhhhHHhcC---CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 34445556666 55689999999999998877 8888899999999999999999999954443
No 134
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=82.92 E-value=0.93 Score=36.44 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=38.2
Q ss_pred eeHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 189 FELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 189 ~~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
+++.++..++++|.-...||.|+ ..+|+.+|+|.+.... .....+.+|+.++
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l 72 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNIL 72 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHH
Confidence 55677788899999888999998 3578899999985432 2234566777655
No 135
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=82.70 E-value=4.6 Score=27.29 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=43.0
Q ss_pred hhhcCCCCCceeHHHHHHHHHH----------cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 33 NLLMDADKGVITFESLKKNSAL----------LGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 33 ~~~D~~~~G~i~~~el~~~l~~----------~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
++||++.+-+||.++++++... .| +++|..-+-+++-+...++...++-+=...++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg-eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~ 77 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG-DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRF 77 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC-chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4789999999999999999874 36 7788888888887766666656665544444443
No 136
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.46 E-value=0.55 Score=44.07 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=56.6
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
.....+.++|...|.+++|+|+..+....+...| ++...+...+...|.++.|.+++++|.-.+.
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 3445778899999999999999999999887766 8888999999999999999999999875554
No 137
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=82.12 E-value=2 Score=39.89 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=29.0
Q ss_pred CccCccccCC---------CCCCc----EEEEEEeccc-ccccHHHHHHHHHHhc
Q 048355 202 SINNKLGEEH---------TSGEQ----EISVKRLSKI-SEQGLKELKNEVILFS 242 (243)
Q Consensus 202 ~~~n~iG~G~---------l~~g~----~vAVK~l~~~-~~~~~~~F~~Ev~~Lg 242 (243)
....+||.|. +|.|+ +||+|.+... +.....+|..|.-+|+
T Consensus 699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~ma 753 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMA 753 (1177)
T ss_pred hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHh
Confidence 4446899998 56663 7999999543 4445678888876665
No 138
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=81.96 E-value=2.7 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=28.4
Q ss_pred hhhcCCCCCceeHHHHHHHHHH----------cCCCCCCHHHHHHHHHh
Q 048355 33 NLLMDADKGVITFESLKKNSAL----------LGLQDLSDDDLKCMLKE 71 (243)
Q Consensus 33 ~~~D~~~~G~i~~~el~~~l~~----------~g~~~~~~~e~~~~~~~ 71 (243)
++||++.+.+|+.+++.++... .| +++|..-+-+++-+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktg-eDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTG-EDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCC-cccHHHHHHHHHHH
Confidence 4799999999999999999874 25 55666555555544
No 139
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=81.17 E-value=3.3 Score=26.55 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHhhcCC-CChHHHHHHHHhhhcCC----CCCceeHHHHHHHHHH
Q 048355 3 AASRNFEDCLPLMANKLGG-DGLIGELCNGFNLLMDA----DKGVITFESLKKNSAL 54 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~-~~~~~~~~~~F~~~D~~----~~G~i~~~el~~~l~~ 54 (243)
.+.|+.++|...+...... ....+++...++.|.++ ..+.++.++|..+|..
T Consensus 13 ~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 13 KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 4679999999999876665 34577888888888655 4799999999998853
No 140
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=81.03 E-value=2.3 Score=34.38 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=30.8
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
|.....||.|+ ..+|..||+|.+........+.+..|+.++.
T Consensus 21 y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~ 71 (297)
T cd06656 21 YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMR 71 (297)
T ss_pred ceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHH
Confidence 45556899987 3578999999996544444567888888764
No 141
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=80.97 E-value=1.5 Score=38.07 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccc--cccHHHHHHHHHHhcC
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKIS--EQGLKELKNEVILFSK 243 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~--~~~~~~F~~Ev~~Lg~ 243 (243)
|..-.+||+|. +..|++||.||+.-.. .....-..+||.+|-+
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~ 172 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRR 172 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHh
Confidence 33334789997 6789999999995433 3334456799988853
No 142
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=80.51 E-value=2.2 Score=37.80 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDL----SDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~----~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
.+-+...|..||.|+||.++.+||+.++...+ ... +..+. .-.+..|.++|.-|+..+...
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P-~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAP-GSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC-CCCCCCCccccc------ceecccceeehhhHHHHHHHH
Confidence 35688899999999999999999999998875 222 11111 111257899999999888754
No 143
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=80.40 E-value=1.8 Score=36.04 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=28.1
Q ss_pred cCccccCC---------CCCCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 204 NNKLGEEH---------TSGEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 204 ~n~iG~G~---------l~~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
.+.||.|+ ..+|+.||||.+.... ....+.|.+|+++|.
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~ 127 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILR 127 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 35799998 3578999999995432 223467889998874
No 144
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=79.91 E-value=1.9 Score=31.17 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=8.5
Q ss_pred hcCCCccCccccCC
Q 048355 198 TDNFSINNKLGEEH 211 (243)
Q Consensus 198 T~~f~~~n~iG~G~ 211 (243)
+++|..+.-+|.+.
T Consensus 111 ~~~y~s~splg~~~ 124 (154)
T PF04478_consen 111 SDKYESNSPLGSTS 124 (154)
T ss_pred ccccccCCCCCCCC
Confidence 56666666666643
No 145
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=79.60 E-value=8.5 Score=34.30 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHH-cCCCCCCHHHHHHH
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNSAL-LGLQDLSDDDLKCM 68 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~-~g~~~~~~~e~~~~ 68 (243)
..+.++|++.|.|+||.++-.|+-..-+. ++ .++...+++.+
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~-~pl~p~~l~~v 237 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFN-TPLDPQELEDV 237 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcC-CCCCHHHHHHH
Confidence 46888999999999999999998776543 46 66666655444
No 146
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.73 E-value=10 Score=23.53 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=31.7
Q ss_pred eeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 43 ITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 43 i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
++-+++.++++..| ..++..++..+++.-+..+--..+-+.+..++.
T Consensus 14 l~d~~m~~if~l~~-~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAG-FEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcC-CccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 45667888888888 888899998888875544333444444444443
No 147
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.36 E-value=2.6 Score=36.20 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.2
Q ss_pred ccccCC---------CCCCcEEEEEEeccccccc-HHHHHHHHHHhc
Q 048355 206 KLGEEH---------TSGEQEISVKRLSKISEQG-LKELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~~~~~~-~~~F~~Ev~~Lg 242 (243)
+||.|. +|-++.||||+++...-+. .++...|+++++
T Consensus 33 ~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~ms 79 (516)
T KOG0582|consen 33 VIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMS 79 (516)
T ss_pred EEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhh
Confidence 799996 6788999999996544333 367788988764
No 148
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=78.11 E-value=2.7 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccc---cHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQ---GLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~---~~~~F~~Ev~~Lg 242 (243)
|...+.||.|+ ..+|..+|+|++...... ....|..|++.|.
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~ 80 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQ 80 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHH
Confidence 56667899998 346889999999643222 2356888988775
No 149
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=77.83 E-value=2.6 Score=33.72 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=33.3
Q ss_pred HHhcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 196 NATDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 196 ~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
..+++|...+.||.|+ -.++..+|+|.+..... ....|.+|++.|.
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~ 70 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMK 70 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHH
Confidence 4556676677899888 23688999999965433 4567889988764
No 150
>PTZ00284 protein kinase; Provisional
Probab=77.70 E-value=1.8 Score=37.80 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 192 AAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 192 ~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
+++...++.|.-..+||+|+ ...+..||||.+.... ...+++..|++.+
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l 179 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFM 179 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHH
Confidence 44555677788888999998 3467899999995322 2234455565544
No 151
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=77.62 E-value=3.3 Score=33.44 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=27.1
Q ss_pred ccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 206 KLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
+||.|+ ..+|..||||++..........|..|+..+.
T Consensus 27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~ 72 (292)
T cd06657 27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMR 72 (292)
T ss_pred HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHH
Confidence 678887 3578999999986444444567889987764
No 152
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=77.24 E-value=2.6 Score=30.19 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=32.8
Q ss_pred CCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHhhCcchhhhhhH
Q 048355 40 KGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDF-------DCDGALNQMEFCVLMFRLSPELMEASSN 102 (243)
Q Consensus 40 ~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~-------~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 102 (243)
-+.||..||.++-+-+. .+...+..+++++.. +..+.|+|+-|..+|........+...+
T Consensus 5 ~~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc 71 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLC 71 (138)
T ss_dssp -S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHH
T ss_pred eeccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHH
Confidence 46788899888665543 244467777777632 3356899999999998865433443333
No 153
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=76.53 E-value=3.2 Score=33.60 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=27.4
Q ss_pred ccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 206 KLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
.||.|+ ..+|..||||.+........+.+.+|+..|.
T Consensus 28 ~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~ 73 (297)
T cd06659 28 KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMR 73 (297)
T ss_pred hcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHH
Confidence 688887 3478899999996544445567889988764
No 154
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=76.30 E-value=3.4 Score=33.16 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=29.1
Q ss_pred CccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 202 SINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 202 ~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
..-+.||.|+ ..++..+|+|++........+.+.+|+.++.
T Consensus 22 ~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~ 71 (285)
T cd06648 22 DNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMR 71 (285)
T ss_pred hcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHH
Confidence 3345899998 3578899999986544444566888887664
No 155
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=75.62 E-value=2.7 Score=35.43 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=27.1
Q ss_pred ccccCC-------CCCCcE-EEEEEeccccccc--HHHHHHHHHHhcC
Q 048355 206 KLGEEH-------TSGEQE-ISVKRLSKISEQG--LKELKNEVILFSK 243 (243)
Q Consensus 206 ~iG~G~-------l~~g~~-vAVK~l~~~~~~~--~~~F~~Ev~~Lg~ 243 (243)
.||.|+ .-.|+. ||||++....... .++|..|+.+|.+
T Consensus 48 ~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~ 95 (362)
T KOG0192|consen 48 VLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSR 95 (362)
T ss_pred hcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHh
Confidence 489888 235676 9999996533222 5689999998864
No 156
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=75.33 E-value=3.3 Score=36.56 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=31.7
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEeccc--ccccHHHHHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKI--SEQGLKELKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~--~~~~~~~F~~Ev~~Lg 242 (243)
.+.|.-.++||+|+ ..+|..||||.+... +......+.+|+..|.
T Consensus 31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~ 86 (496)
T PTZ00283 31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLL 86 (496)
T ss_pred CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHh
Confidence 34566667899998 467899999998543 2233456888887763
No 157
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=75.20 E-value=3 Score=33.52 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=26.6
Q ss_pred CccccCC---------CCCCcEEEEEEeccccc-ccHHHHHHHHHHh
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKISE-QGLKELKNEVILF 241 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~~-~~~~~F~~Ev~~L 241 (243)
-.||.|. -++|..+|||++...+. ...+.|.-|+++.
T Consensus 70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~ 116 (361)
T KOG1006|consen 70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTV 116 (361)
T ss_pred HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHH
Confidence 3689997 36899999999965443 3446687777653
No 158
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=74.96 E-value=3.9 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=25.7
Q ss_pred ccccCC---------CCCCcEEEEEEecc-cccccHHHHHHHHHHh
Q 048355 206 KLGEEH---------TSGEQEISVKRLSK-ISEQGLKELKNEVILF 241 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~-~~~~~~~~F~~Ev~~L 241 (243)
-||+|+ ..+|+..|||++.. .+.+..+....|+.+.
T Consensus 53 elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~ 98 (282)
T KOG0984|consen 53 ELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDII 98 (282)
T ss_pred hhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhh
Confidence 589996 57999999999953 2344455666776553
No 159
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=74.85 E-value=1.8 Score=30.22 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHhhcCCC
Q 048355 151 PAIEEDLFILSIILDKTGNN 170 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (243)
++++++++++.++++|++++
T Consensus 75 aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34444344444444444333
No 160
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=74.49 E-value=4 Score=33.00 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
|.....||.|+ ..+|..||||.+........+.+.+|++.+.
T Consensus 21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~ 71 (296)
T cd06655 21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMK 71 (296)
T ss_pred EEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHH
Confidence 44455788887 3678999999996544444567888988764
No 161
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=74.34 E-value=2.6 Score=35.04 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCccCccccCC---------CCCCcEEEEEEeccccccc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQG 230 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~ 230 (243)
+.+.++||+|. ...++.|||||.+.+.+..
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k 64 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK 64 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC
Confidence 45668999998 4568899999998665433
No 162
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.09 E-value=18 Score=26.88 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCC-------CCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQ-------DLSDDDLKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~-------~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
.+.+.++|..+++.+.+.+|..|+.++++.-. . --+.-|...++. +-.|+||.+..++-..++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr-~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNR-NANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc-ccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHHhhhc
Confidence 36799999999999999999999999997632 1 111222222222 235678888877765543
No 163
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=73.73 E-value=5.1 Score=32.34 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=29.9
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
|.....||.|+ ..+|..||+|.+..........|..|++++.
T Consensus 22 y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~ 72 (296)
T cd06654 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMR 72 (296)
T ss_pred eeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 33345788887 3578899999997554445567888888764
No 164
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=73.72 E-value=10 Score=21.14 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhhc-CC-CCCceeHHHHHHHHHH
Q 048355 24 LIGELCNGFNLLM-DA-DKGVITFESLKKNSAL 54 (243)
Q Consensus 24 ~~~~~~~~F~~~D-~~-~~G~i~~~el~~~l~~ 54 (243)
.+..+..+|..|- ++ +...++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3456888888885 33 3677999999998864
No 165
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=73.52 E-value=4.7 Score=32.52 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=27.0
Q ss_pred ccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 206 KLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
.||.|+ ..++..||||++........+.|.+|+..+.
T Consensus 29 ~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~ 74 (292)
T cd06658 29 KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMR 74 (292)
T ss_pred cccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHH
Confidence 588887 3468899999986544444567888987764
No 166
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=73.25 E-value=25 Score=23.55 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC---CCCCcccHHHHHHHHHhhCc
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDF---DCDGALNQMEFCVLMFRLSP 94 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~ 94 (243)
.-..+..-|..+-. +|++...+|.+++ | .+-+.+=..++|..+-. -..+.|+.+|+..++...+.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---G-M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---G-MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---C-CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 45667777887766 8999999999987 5 34455556667654321 12468999999888876543
No 167
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=73.08 E-value=5.3 Score=35.37 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=31.0
Q ss_pred CCccCccccCC---------CCCCcEEEEEEeccc--ccccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKI--SEQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~--~~~~~~~F~~Ev~~Lg 242 (243)
|.+ .++|.|- =.+|+.||||.+++. ....+.+..+||++|-
T Consensus 567 f~d-evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq 618 (888)
T KOG4236|consen 567 FAD-EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQ 618 (888)
T ss_pred hhH-hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHH
Confidence 554 4889986 357999999999653 3445678999999884
No 168
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=72.50 E-value=12 Score=21.76 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=32.9
Q ss_pred ChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q 048355 23 GLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKE 71 (243)
Q Consensus 23 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~ 71 (243)
.....|..+|.. +.+.+.+++..+...+| ++...|..+|..
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 344567777776 56899999999999988 899999999875
No 169
>PLN02230 phosphoinositide phospholipase C 4
Probab=72.22 E-value=20 Score=32.43 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=49.9
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcC-CC-CCCHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLG-LQ-DLSDDDLKCMLKEGDF-------DCDGALNQMEFCVLMFR 91 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g-~~-~~~~~e~~~~~~~~d~-------~~~g~i~~~ef~~~~~~ 91 (243)
.++..++..+|..|-.++ +.++.++|..+|..-. .. ..+.+++..++..+-. -..+.++.+.|..++..
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 456679999999995444 8999999999998643 01 3466777777764321 12456999999998875
No 170
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=71.86 E-value=26 Score=23.84 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=42.9
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048355 28 LCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCV 87 (243)
Q Consensus 28 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~ 87 (243)
+..+|-+++.-++-..+..+++.+|...| ....++.++.++.++. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG-~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVG-AEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhC-cccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 34567777788888889999999999999 8888899999998875 44 5666654
No 171
>PLN02228 Phosphoinositide phospholipase C
Probab=71.13 E-value=24 Score=31.71 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=51.7
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhh
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALL-GLQ-DLSDDDLKCMLKEGDFD----CDGALNQMEFCVLMFRL 92 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~-~~~~~e~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 92 (243)
..+.+++..+|..+-.+ +.++.++|..+|... + . ..+.+.+.+++..+... ..|.++.+.|..++...
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQG-ERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcC-CccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 44678899999988643 589999999999875 3 2 24566788899887543 34679999999998753
No 172
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.01 E-value=3.5 Score=36.98 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHH---HHHHHHHHh
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLK---ELKNEVILF 241 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~---~F~~Ev~~L 241 (243)
|.+-..||.|+ ..+..+|||||++....++.. ....||.-|
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL 80 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFL 80 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHH
Confidence 55566799998 356789999999877777654 356777655
No 173
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=70.87 E-value=25 Score=32.43 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=51.4
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.++|.+-+..+..... .-....++..|+..|..+++.+...++..+...++ ..+ ++..+|..+-.+ .+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~-~rp---ev~~~f~~~s~~-~~~ls~ 223 (746)
T KOG0169|consen 150 NGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT-KRP---EVYFLFVQYSHG-KEYLST 223 (746)
T ss_pred ccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc-cCc---hHHHHHHHHhCC-CCccCH
Confidence 466777776666554432 22334677778877888899999999888887765 322 566666555433 445555
Q ss_pred HHHHHHHH
Q 048355 83 MEFCVLMF 90 (243)
Q Consensus 83 ~ef~~~~~ 90 (243)
+++..++.
T Consensus 224 ~~L~~Fl~ 231 (746)
T KOG0169|consen 224 DDLLRFLE 231 (746)
T ss_pred HHHHHHHH
Confidence 55544444
No 174
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=70.48 E-value=4.7 Score=34.00 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=27.8
Q ss_pred CCccCccccCCC--------------CCCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEHT--------------SGEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~l--------------~~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
|.-...||+|+. ..+..||||.+.... ....+.|.+|+++|.
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~ 93 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLS 93 (375)
T ss_pred eehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHH
Confidence 444568999981 235589999996432 223456889998774
No 175
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=70.44 E-value=1.4 Score=35.72 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCC-------CCCCHHHHHHHHHhcCCCCC
Q 048355 5 SRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGL-------QDLSDDDLKCMLKEGDFDCD 77 (243)
Q Consensus 5 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~-------~~~~~~e~~~~~~~~d~~~~ 77 (243)
.+++++|.+-+.++ -.-.+.+.++|. | .+...|+.+.+..--....| ..-+.++|++|.+.+- +.+
T Consensus 8 ~~d~~~f~~dv~~k---i~lVekLA~~~G--D-~nts~ItV~sIt~gstiVtwtNnTLp~~~CP~eeI~~L~~~L~-~~~ 80 (290)
T PF05454_consen 8 DIDYESFNNDVQRK---ILLVEKLARLFG--D-RNTSSITVRSITSGSTIVTWTNNTLPTSPCPKEEIEKLRKRLV-DDD 80 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCHHHhhhhHHHH---HHHHHHHHHHhC--C-CCCCeEEEEEecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHh-cCC
Confidence 35667765543322 123345555555 2 22346777766532211111 2344677888887763 445
Q ss_pred CcccHHHHHHHH
Q 048355 78 GALNQMEFCVLM 89 (243)
Q Consensus 78 g~i~~~ef~~~~ 89 (243)
|.++ .+|...|
T Consensus 81 g~~~-~~f~~am 91 (290)
T PF05454_consen 81 GKPS-QEFVRAM 91 (290)
T ss_dssp ------------
T ss_pred CCcC-HHHHHHh
Confidence 5433 4555544
No 176
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=69.73 E-value=4.2 Score=33.52 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccc---cccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKIS---EQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~Lg 242 (243)
|.-...||+|+ ..+|+.||||.+.... ....+.+.+|+++|.
T Consensus 20 y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~ 73 (329)
T PTZ00263 20 FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILM 73 (329)
T ss_pred eEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHH
Confidence 45556899998 3568899999985432 123456888988764
No 177
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=69.70 E-value=5 Score=33.87 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCccCccccCCC--------------CCCcEEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEHT--------------SGEQEISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~l--------------~~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
|.-.++||+|+. .++..||||++...... ....+..|+++|.
T Consensus 40 ~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~ 96 (374)
T cd05106 40 LQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILS 96 (374)
T ss_pred ceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHH
Confidence 555568999981 12357999999643222 2356889998774
No 178
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=69.60 E-value=7 Score=31.48 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
|.-...||.|+ ..++..||+|.+........+.|.+|+..+.
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~ 71 (293)
T cd06647 21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMR 71 (293)
T ss_pred ceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHh
Confidence 44445788887 3467899999986444444567888887664
No 179
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.44 E-value=6.1 Score=26.44 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCceeHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 40 KGVITFESLKKNSALLGL-QDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 40 ~G~i~~~el~~~l~~~g~-~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
||.++..|...+-..+.- ..+++.+.+.++..+....+...++.+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 688888886555433210 14788888888887776666678899998887754
No 180
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=68.58 E-value=2.8 Score=35.30 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEecccc---cccHHHHHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKIS---EQGLKELKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~Lg 242 (243)
.++|.-..+||+|+ ..+|..+|||.+.... ......|..|++++.
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~ 98 (370)
T cd05596 42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMA 98 (370)
T ss_pred HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHH
Confidence 45566677899998 3568899999995421 223345778888764
No 181
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=68.04 E-value=2 Score=41.46 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHhcCCCccCccccCC---------CCCCcEEEEEEecccc-cccHHHHHHHHHHhcC
Q 048355 196 NATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS-EQGLKELKNEVILFSK 243 (243)
Q Consensus 196 ~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg~ 243 (243)
+-.+.|-+-.++|+|| --||...||||+-... ......-.+||++|+|
T Consensus 476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LAr 533 (1351)
T KOG1035|consen 476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLAR 533 (1351)
T ss_pred hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhh
Confidence 3445577778999999 2389999999994332 2223456789999875
No 182
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=67.99 E-value=23 Score=26.86 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=49.1
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHH-HHHHHHHcCCCCCCHHHHHHHH-HhcCCCCCCcc
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFES-LKKNSALLGLQDLSDDDLKCML-KEGDFDCDGAL 80 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e-l~~~l~~~g~~~~~~~e~~~~~-~~~d~~~~g~i 80 (243)
+|.|+.+++..++......+ +.+ .++|.--++.||..+ +.+++..++ .+.+|+-+.+ +....| -
T Consensus 11 DGTITl~Ds~~~itdtf~~~----e~k---~l~~~vls~tiS~rd~~g~mf~~i~---~s~~Eile~llk~i~Id----p 76 (220)
T COG4359 11 DGTITLNDSNDYITDTFGPG----EWK---ALKDGVLSKTISFRDGFGRMFGSIH---SSLEEILEFLLKDIKID----P 76 (220)
T ss_pred CCceEecchhHHHHhccCch----HHH---HHHHHHhhCceeHHHHHHHHHHhcC---CCHHHHHHHHHhhcccC----c
Confidence 68899999998886554432 222 445555678888655 788888877 4446655544 434443 3
Q ss_pred cHHHHHHHHHhh
Q 048355 81 NQMEFCVLMFRL 92 (243)
Q Consensus 81 ~~~ef~~~~~~~ 92 (243)
.|.||+..+...
T Consensus 77 ~fKef~e~ike~ 88 (220)
T COG4359 77 GFKEFVEWIKEH 88 (220)
T ss_pred cHHHHHHHHHHc
Confidence 578888888753
No 183
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.95 E-value=6.7 Score=34.08 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=29.3
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSAL 54 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 54 (243)
.-.++++..++++.|.|+||.++..||..++..
T Consensus 261 klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 261 KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 456789999999999999999999999998754
No 184
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.90 E-value=6.6 Score=34.64 Aligned_cols=41 Identities=32% Similarity=0.494 Sum_probs=28.9
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHHH-HHHHHHHhc
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKE-LKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~-F~~Ev~~Lg 242 (243)
|..--.||+|. ...+.+||||++... .|..++ ..+|+.+|.
T Consensus 275 y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~-~Q~~keLilnEi~Vm~ 325 (550)
T KOG0578|consen 275 YTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLR-KQPKKELLLNEILVMR 325 (550)
T ss_pred hcchhhhccccccceeeeeeccCCceEEEEEEEec-cCCchhhhHHHHHHHH
Confidence 34445789887 567899999999644 444455 469988763
No 185
>PLN02222 phosphoinositide phospholipase C 2
Probab=67.83 E-value=24 Score=31.79 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCC-CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHhh
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALL-GLQ-DLSDDDLKCMLKEGDF-DCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~-~~~~~e~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 92 (243)
...++..+|..|-. ++.++.++|..+|... + + ..+.+.+..++..+.. ...+.++++.|..++...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~-~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQK-QDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcC-CccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 45689999999854 4799999999999875 4 3 3567788888887632 245679999999998763
No 186
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=67.42 E-value=7.3 Score=32.39 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=30.1
Q ss_pred cCCCccCccccCC---------CCCCcEEEEEEeccc--ccccHHHHHHHHHHhc
Q 048355 199 DNFSINNKLGEEH---------TSGEQEISVKRLSKI--SEQGLKELKNEVILFS 242 (243)
Q Consensus 199 ~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~--~~~~~~~F~~Ev~~Lg 242 (243)
+.|.....||+|+ ..+|..||||.+... .....+.+..|++++.
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~ 70 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMK 70 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHH
Confidence 3466566899998 357899999998532 2223456778887764
No 187
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.89 E-value=12 Score=22.77 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.7
Q ss_pred CceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 41 GVITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 41 G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
-.|+.+-++.++..+| .++++..+.++.+...
T Consensus 30 Ppine~mir~M~~QMG-~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMG-RKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHH
Confidence 4688899999999999 9999999999887653
No 188
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=66.77 E-value=6.8 Score=31.15 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=34.5
Q ss_pred eHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 190 ELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 190 ~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
++.++..++..|.-...||.|+ ..++..+|+|...... ....++..|+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l 66 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINML 66 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHH
Confidence 4455555666666667899998 3578899999985432 2335677887765
No 189
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=66.34 E-value=7.1 Score=32.53 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=30.9
Q ss_pred cCCCccCccccCC---------CCCCcEEEEEEeccc--ccccHHHHHHHHHHhc
Q 048355 199 DNFSINNKLGEEH---------TSGEQEISVKRLSKI--SEQGLKELKNEVILFS 242 (243)
Q Consensus 199 ~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~--~~~~~~~F~~Ev~~Lg 242 (243)
+.|.-...||+|+ ...|..||||++... .......+..|+.+|.
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~ 75 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLK 75 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHH
Confidence 4466667899998 356889999999543 2223466888888764
No 190
>PRK00523 hypothetical protein; Provisional
Probab=66.22 E-value=13 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=27.4
Q ss_pred CceeHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 048355 41 GVITFESLKKNSALLGLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 41 G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~ 72 (243)
-.|+.+-++.++.++| .++++..++++.+..
T Consensus 38 Ppine~mir~M~~QMG-qKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMG-RKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 4688888999999999 999999999998876
No 191
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=65.39 E-value=8.4 Score=32.93 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=25.9
Q ss_pred cCccccCCC--------------CCCcEEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 204 NNKLGEEHT--------------SGEQEISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 204 ~n~iG~G~l--------------~~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
..+||.|++ ..+..||||++...... ....|.+|+++|.
T Consensus 42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~ 95 (400)
T cd05105 42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMT 95 (400)
T ss_pred hheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHH
Confidence 357898871 12346999999643322 2356999999875
No 192
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=65.18 E-value=7.4 Score=33.31 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=26.3
Q ss_pred cCccccCC--------C------CCCcEEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 204 NNKLGEEH--------T------SGEQEISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 204 ~n~iG~G~--------l------~~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
...||+|+ . ..+..||||++...... ..+.|..|+++|.
T Consensus 42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~ 95 (401)
T cd05107 42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMS 95 (401)
T ss_pred hhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHH
Confidence 45799998 1 12458999999643222 2356889998875
No 193
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=64.38 E-value=9.5 Score=31.84 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=30.7
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEecccc--cccHHHHHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKIS--EQGLKELKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~--~~~~~~F~~Ev~~Lg 242 (243)
.+.|.-...||+|+ ...+..||||++.... ....+.+..|+.++.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~ 78 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMK 78 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHH
Confidence 44566667899998 2467899999996432 223456778887653
No 194
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=63.73 E-value=0.94 Score=28.71 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=8.7
Q ss_pred eeHHHHHHHhcCCCc
Q 048355 189 FELAAISNATDNFSI 203 (243)
Q Consensus 189 ~~~~~i~~aT~~f~~ 203 (243)
.||+|=.+|-..|..
T Consensus 57 ~TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 57 HTYEDPNQAVREFAK 71 (75)
T ss_dssp GGSSSHHHHHHHCSS
T ss_pred ccccCHHHHHHHHHh
Confidence 356666666655543
No 195
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=63.26 E-value=6.7 Score=31.79 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=28.7
Q ss_pred CCCccCccccCCC--------------CCCcEEEEEEeccccc-ccHHHHHHHHHHhc
Q 048355 200 NFSINNKLGEEHT--------------SGEQEISVKRLSKISE-QGLKELKNEVILFS 242 (243)
Q Consensus 200 ~f~~~n~iG~G~l--------------~~g~~vAVK~l~~~~~-~~~~~F~~Ev~~Lg 242 (243)
+|.-.+.||+|+. ..+..||||.+..... .....|..|+++|.
T Consensus 36 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~ 93 (302)
T cd05055 36 NLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMS 93 (302)
T ss_pred HeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHH
Confidence 4666778999981 1245799999864322 22356889998874
No 196
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=62.82 E-value=13 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=20.7
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 28 LCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 28 ~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+.+....||++++|.|+.-+++-++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 6667889999999999999998887654
No 197
>PLN02223 phosphoinositide phospholipase C
Probab=62.57 E-value=31 Score=30.72 Aligned_cols=69 Identities=10% Similarity=-0.148 Sum_probs=50.2
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHH---HHc-CCCCCCHHHHHHHHHhcCCC--------CCCcccHHHHHHHH
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNS---ALL-GLQDLSDDDLKCMLKEGDFD--------CDGALNQMEFCVLM 89 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l---~~~-g~~~~~~~e~~~~~~~~d~~--------~~g~i~~~ef~~~~ 89 (243)
.++.+.++++|..| .++.|.++.+.|.+++ ... |-...+.++++.++..+-.. ..+.++.+.|..++
T Consensus 12 ~~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 45667899999998 4778999999999988 332 30246777777777654221 23679999999998
Q ss_pred Hh
Q 048355 90 FR 91 (243)
Q Consensus 90 ~~ 91 (243)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 76
No 198
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=62.40 E-value=4 Score=33.17 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=27.5
Q ss_pred ccccCC---------CCCCcEEEEEEeccc--ccccHHHHHHHHHHhc
Q 048355 206 KLGEEH---------TSGEQEISVKRLSKI--SEQGLKELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~~--~~~~~~~F~~Ev~~Lg 242 (243)
+||+|. +.+|..||.|++.-. +.........||.+|.
T Consensus 26 ~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLk 73 (375)
T KOG0591|consen 26 KIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLK 73 (375)
T ss_pred HHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHH
Confidence 789998 789999999999622 2223355788988875
No 199
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=60.96 E-value=6.9 Score=32.95 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=30.8
Q ss_pred HhcCCCccCccccCC---------CCCCcEEEEEEecccc---cccHHHHHHHHHHhc
Q 048355 197 ATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS---EQGLKELKNEVILFS 242 (243)
Q Consensus 197 aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~Lg 242 (243)
..++|.-..+||+|+ ..++..+|+|.+.... ......|..|++++.
T Consensus 41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~ 98 (370)
T cd05621 41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 98 (370)
T ss_pred CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHH
Confidence 345566677899998 3568899999985321 122345778887653
No 200
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=60.51 E-value=13 Score=34.35 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCCCc--EEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 212 TSGEQ--EISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 212 l~~g~--~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
.++|+ .||||-|...... ....|..|+.++-
T Consensus 133 ~psgk~V~VAVKclr~d~l~~~mddflrEas~M~ 166 (1039)
T KOG0199|consen 133 QPSGKHVNVAVKCLRDDSLNAIMDDFLREASHML 166 (1039)
T ss_pred CCCCcEEeEEEEeccCCccchhHHHHHHHHHHHH
Confidence 67776 5799999655443 4578999998764
No 201
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=59.45 E-value=28 Score=19.60 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 45 FESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 45 ~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
.+|...+|..+| .++.++.+.+..... ...++.++.++..
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 357788888999 889999999888754 3346677766543
No 202
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=59.25 E-value=9.7 Score=32.58 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=25.5
Q ss_pred CccccCC---------CCCCcEEEEEEecccc--cc---cHHHH--HHHHHHhc
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKIS--EQ---GLKEL--KNEVILFS 242 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~--~~---~~~~F--~~Ev~~Lg 242 (243)
..+|+|+ -..|+.||||-++... .. ..+.+ .+|+++|-
T Consensus 178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILk 231 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILK 231 (475)
T ss_pred eeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHH
Confidence 4678898 3689999999996532 11 11333 59998873
No 203
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=59.22 E-value=30 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKE 71 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~ 71 (243)
...|...|.. +.+.+.++...+...+| ++...|..+|..
T Consensus 12 ~~~L~~~f~~-----~~~p~~~~~~~la~~l~---l~~~~V~~WF~n 50 (57)
T PF00046_consen 12 LKVLEEYFQE-----NPYPSKEEREELAKELG---LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHH-----SSSCHHHHHHHHHHHHT---SSHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hcccccccccccccccc---ccccccccCHHH
Confidence 3445555552 67899999999888888 889999988864
No 204
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=58.88 E-value=12 Score=31.05 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=30.1
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEecccc--cccHHHHHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKIS--EQGLKELKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~--~~~~~~F~~Ev~~Lg 242 (243)
.+.|.-...||+|+ ...+..||||++.... ....+.+..|+.++.
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~ 71 (355)
T cd07874 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMK 71 (355)
T ss_pred hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHH
Confidence 34566667899998 2457899999996432 223356778887653
No 205
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=58.81 E-value=14 Score=32.11 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCccCccccCC--------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 201 FSINNKLGEEH--------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 201 f~~~n~iG~G~--------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
|++ +-||.|+ +.+|+.||||...+. ..+.+..++.+|
T Consensus 120 fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~---i~~~i~~Dl~~l 164 (437)
T TIGR01982 120 FEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPG---IEKTIAADIALL 164 (437)
T ss_pred CCC-cceeeeehhheEEEEecCCCEEEEEeeCCC---cHHHHHHHHHHH
Confidence 543 5788888 789999999998643 234455555443
No 206
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=58.13 E-value=4.7 Score=30.56 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.5
Q ss_pred HHhhhcCCC-CCceeHHHHHHHHHHcCCCCCC-HHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 31 GFNLLMDAD-KGVITFESLKKNSALLGLQDLS-DDDLKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 31 ~F~~~D~~~-~G~i~~~el~~~l~~~g~~~~~-~~e~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
-|-.+|+.- ||++|-.||.-+-.-+ ++ +.-+...|...|.|+||.|+.+|+..-+
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~----ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL----IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeccccCCCccccccccccccccCCc----ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 366677554 8999888876543211 22 2336778888999999999999987544
No 207
>PTZ00036 glycogen synthase kinase; Provisional
Probab=58.09 E-value=9.6 Score=33.03 Aligned_cols=41 Identities=10% Similarity=0.365 Sum_probs=27.5
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
+..|.-..+||+|+ ...|..||||++.... .....|+++|.
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~ 114 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMK 114 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHH
Confidence 34566677899998 3578899999985322 12345776653
No 208
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=57.70 E-value=13 Score=30.71 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=30.6
Q ss_pred CCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhcC
Q 048355 201 FSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFSK 243 (243)
Q Consensus 201 f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg~ 243 (243)
+.....||+|. ..+|...|||.....+....++...|+++|.+
T Consensus 19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~ 70 (313)
T KOG0198|consen 19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSR 70 (313)
T ss_pred hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHh
Confidence 34456899998 34588999999965432225678999998864
No 209
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=57.57 E-value=11 Score=34.77 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=30.9
Q ss_pred ccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 203 INNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 203 ~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
-.++|-+|| ...|..+|+||+-..+..+.+...+||+++
T Consensus 41 V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~M 88 (738)
T KOG1989|consen 41 VEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIM 88 (738)
T ss_pred EEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHH
Confidence 346889999 234599999999766777778899999876
No 210
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=57.26 E-value=13 Score=30.67 Aligned_cols=45 Identities=7% Similarity=-0.044 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 8 FEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 8 f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+..|..++... .....--+..|+..|.|+|-.|+..|++..|...
T Consensus 355 wKpFK~~l~k~---s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 355 WKPFKRVLLKK---SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred cchHHHHHHhh---ccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 34455555443 3345677889999999999999999999988653
No 211
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=57.20 E-value=13 Score=31.69 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=28.4
Q ss_pred CccccCC---------CCCCcEEEEEEecccccc---cHHHHHHHHHHhc
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKISEQ---GLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~~~---~~~~F~~Ev~~Lg 242 (243)
.+||+|. -.+|+.+|+|.+...... ......+||++|.
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~ 90 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQ 90 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHH
Confidence 5799998 345999999999654333 3357899999875
No 212
>PLN02952 phosphoinositide phospholipase C
Probab=56.87 E-value=33 Score=31.15 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCCceeHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 39 DKGVITFESLKKNSALLGL-QDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g~-~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
+.|.++.+++..+.+.+.. ...+..|+..+|..+..+ ++.++.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 4589999999888877641 234678999999998654 3689999999988763
No 213
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=56.84 E-value=13 Score=29.59 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
+|..||||++........+.|.+|+++|.
T Consensus 32 ~~~~v~iK~~~~~~~~~~~~~~~e~~~l~ 60 (284)
T cd05081 32 TGEVVAVKKLQHSTAEHLRDFEREIEILK 60 (284)
T ss_pred CCcEEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 67889999997655555678999998875
No 214
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=56.66 E-value=15 Score=16.91 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=6.2
Q ss_pred cCCCCCceeHHHH
Q 048355 36 MDADKGVITFESL 48 (243)
Q Consensus 36 D~~~~G~i~~~el 48 (243)
|.++||.|+.-++
T Consensus 1 DvN~DG~vna~D~ 13 (21)
T PF00404_consen 1 DVNGDGKVNAIDL 13 (21)
T ss_dssp -TTSSSSSSHHHH
T ss_pred CCCCCCcCCHHHH
Confidence 3455555555444
No 215
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=56.50 E-value=9.1 Score=34.43 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=38.8
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESL 48 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el 48 (243)
+|.++|.+++..+..... .+..+.++-.|+++|+.++ ..+.+|.
T Consensus 569 ~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 569 TGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 688999999998887655 6788899999999999999 8888887
No 216
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=56.39 E-value=8.4 Score=32.44 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccc---cccHHHHHHHHHHhc
Q 048355 191 LAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS---EQGLKELKNEVILFS 242 (243)
Q Consensus 191 ~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~Lg 242 (243)
+.++....++|.-...||+|+ ..++..+|+|.+.... ......|..|++++.
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~ 98 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 98 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHH
Confidence 344555567788888999998 3467899999985321 122345777777653
No 217
>PRK01844 hypothetical protein; Provisional
Probab=55.66 E-value=24 Score=22.09 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=27.2
Q ss_pred CceeHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 048355 41 GVITFESLKKNSALLGLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 41 G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~ 72 (243)
-.|+.+-++.++.++| .++++..++++.+..
T Consensus 37 Ppine~mir~Mm~QMG-qkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMG-QKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 3688888999999999 999999999988875
No 218
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.59 E-value=24 Score=21.89 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=26.8
Q ss_pred CceeHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 048355 41 GVITFESLKKNSALLGLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 41 G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~ 72 (243)
-.|+.+-++.++.++| .++++..++++++..
T Consensus 37 Ppine~~iR~M~~qmG-qKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMG-QKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 4688888999999999 999999999988765
No 219
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=55.35 E-value=7.2 Score=32.47 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=28.1
Q ss_pred cCCCccCccccCC---------CCCCcEEEEEEecccccc-c-HHHHHHHHHHhc
Q 048355 199 DNFSINNKLGEEH---------TSGEQEISVKRLSKISEQ-G-LKELKNEVILFS 242 (243)
Q Consensus 199 ~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~-~-~~~F~~Ev~~Lg 242 (243)
++|-.-|.|+.|. -..+++||.||+...... + .-.-.+||.+|-
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl 130 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILL 130 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHH
Confidence 4455668899998 346789999999643211 1 112357887764
No 220
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=53.15 E-value=17 Score=22.27 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Q 048355 39 DKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFD 75 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~ 75 (243)
.++.++..++.+.+...| .+++++.+...++.++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~g-~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRG-EELSEEAVRRRLRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHC
Confidence 446788999999998888 889999999988888765
No 221
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=52.98 E-value=7.3 Score=27.04 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=22.2
Q ss_pred CccccCC--------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 205 NKLGEEH--------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 205 n~iG~G~--------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
+-||.|+ +.+|+.||||...+.- .+.+...+.+|
T Consensus 17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP~i---~~~i~~Dl~~l 58 (119)
T PF03109_consen 17 EPLASASIAQVHRARLKDGEEVAVKVQRPGI---EEQIEADLRIL 58 (119)
T ss_pred chhhheehhhheeeeecccchhhhhhcchHH---HHHHHHHHHHH
Confidence 4567776 7889999999986532 23344444443
No 222
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.55 E-value=23 Score=30.06 Aligned_cols=55 Identities=27% Similarity=0.318 Sum_probs=40.7
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048355 29 CNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCV 87 (243)
Q Consensus 29 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~ 87 (243)
-+.|-.+-+- +|+|+-..-+.-|-. .+++..-+-++++..|.|+||.++-+||.-
T Consensus 447 de~fy~l~p~-~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 447 DEIFYTLSPV-NGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred Hhhhhccccc-CceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3444444332 578887766665544 358888899999999999999999999963
No 223
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=52.54 E-value=16 Score=32.11 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=27.1
Q ss_pred CccCccccCC---------CCC-CcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 202 SINNKLGEEH---------TSG-EQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 202 ~~~n~iG~G~---------l~~-g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
.-.++||+|+ ..+ +..||+|+...........+.+|++.|.
T Consensus 70 ~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~ 120 (478)
T PTZ00267 70 VLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLA 120 (478)
T ss_pred EEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHH
Confidence 3346789888 223 6678888875444444456888998875
No 224
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=52.50 E-value=21 Score=29.90 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=32.4
Q ss_pred eeHHHHHHHhcCCCccCccccCC---------CCCCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 189 FELAAISNATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 189 ~~~~~i~~aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
++..||... ++||+|. -+.++.+|.|.+.... ..-.++...|+++|-
T Consensus 76 i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~ 132 (364)
T KOG0581|consen 76 ISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILR 132 (364)
T ss_pred cCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHh
Confidence 455565443 5799887 3678999999994332 223477889999874
No 225
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=52.21 E-value=20 Score=29.20 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=26.5
Q ss_pred cCccccCC---------CCCCcEEEEEEecccccc---cHHHHHHHHHHhc
Q 048355 204 NNKLGEEH---------TSGEQEISVKRLSKISEQ---GLKELKNEVILFS 242 (243)
Q Consensus 204 ~n~iG~G~---------l~~g~~vAVK~l~~~~~~---~~~~F~~Ev~~Lg 242 (243)
.+.||.|+ ..+|..||+|++...... ....+.+|++.+.
T Consensus 26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~ 76 (313)
T cd06633 26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQ 76 (313)
T ss_pred ceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHH
Confidence 34689997 346889999999543222 2346788887764
No 226
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=51.98 E-value=64 Score=20.98 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=36.5
Q ss_pred ceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 42 VITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 42 ~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
.||.+||.++-+..+ .++|+.+++.++..+..+.-.-.+-++=..++..
T Consensus 14 ~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 14 NITAKELLKYSKQYN-ISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 589999999999999 8999999999988776554444444555555544
No 227
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=51.81 E-value=18 Score=32.46 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=24.3
Q ss_pred CccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
.+||+|. ...++.||||.+.+.... .++=..||.+|.
T Consensus 192 e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f-~~Q~~~Ei~iL~ 237 (586)
T KOG0667|consen 192 EVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRF-LRQAQIEIRILE 237 (586)
T ss_pred EEecccccceeEEEEecCCCcEEEEEeeccChHH-HHHHHHHHHHHH
Confidence 3899998 567899999999643221 122246776663
No 228
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=51.51 E-value=6.2 Score=35.07 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=27.1
Q ss_pred CccccCC-------CC-CCcEEEEEEecc--cccccHHHHHHHHHHhc
Q 048355 205 NKLGEEH-------TS-GEQEISVKRLSK--ISEQGLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~-------l~-~g~~vAVK~l~~--~~~~~~~~F~~Ev~~Lg 242 (243)
..||+|| +. +...+|.||... .+.+....|.+|++.|-
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~ 414 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLN 414 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHH
Confidence 4789999 33 346788888742 34555678999999874
No 229
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.31 E-value=13 Score=37.57 Aligned_cols=70 Identities=7% Similarity=0.089 Sum_probs=51.4
Q ss_pred CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 048355 22 DGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDL----SDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLS 93 (243)
Q Consensus 22 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~----~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 93 (243)
+.+.+++++++..||++.+|+|...++..+++.+. .++ +.+. +-+--++....+|.|++.+-+.++....
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~-ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD-PPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC-CccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 56678999999999999999999999999999874 332 1121 1122234455788999998887776543
No 230
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=50.73 E-value=43 Score=21.40 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=4.3
Q ss_pred cHHHHHHHHH
Q 048355 7 NFEDCLPLMA 16 (243)
Q Consensus 7 ~f~ef~~~~~ 16 (243)
+|++|...+.
T Consensus 28 ~W~~~~~~~~ 37 (96)
T PF03732_consen 28 TWEEFKDAFR 37 (96)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 231
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=50.22 E-value=34 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=24.5
Q ss_pred hcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 35 LMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 35 ~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
+..|.+|+++.+||.+.+..-+ ..++.+++.+++..-+
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~-~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKG-LWVTEEDIREVVETDD 62 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT--TT--HHHHHHHHHH-S
T ss_pred CccCCCCCEeHHHHHHHHHHcC-CCCCHHHHHHHHhhCC
Confidence 3578889999999999998877 7788999999998643
No 232
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=49.13 E-value=18 Score=28.48 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=29.6
Q ss_pred hcCCCccCccccCC-------CCCCcEEEEEEecccccccHHH---------HHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH-------TSGEQEISVKRLSKISEQGLKE---------LKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~-------l~~g~~vAVK~l~~~~~~~~~~---------F~~Ev~~Lg 242 (243)
.+.+...+++|.|| -.++..+|||.+........+. |.+|++.+.
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~ 90 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTD 90 (232)
T ss_pred hCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHH
Confidence 45577888999888 1346689999996543332222 678876553
No 233
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=48.99 E-value=17 Score=30.17 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=27.5
Q ss_pred CCccCccccCC--------C--CCCcEEEEEEecccc---cccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEH--------T--SGEQEISVKRLSKIS---EQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~--------l--~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~Lg 242 (243)
|.-...||+|+ . .++..||||++.... ......|.+|+++|.
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~ 86 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILN 86 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHH
Confidence 55556899998 1 223689999985322 223456888988774
No 234
>PHA03212 serine/threonine kinase US3; Provisional
Probab=48.94 E-value=18 Score=30.71 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=26.9
Q ss_pred CCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 200 NFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 200 ~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
+|.-...||+|+ ...+..||+|+... ..+.+|+++|.
T Consensus 93 ~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~------~~~~~E~~il~ 138 (391)
T PHA03212 93 GFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR------GGTATEAHILR 138 (391)
T ss_pred CcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh------hhhHHHHHHHH
Confidence 465566899998 35688999997632 34778888775
No 235
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=48.22 E-value=30 Score=21.57 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 5 SRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 5 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
.+.|...+.++....+ ++..+.+...|+. =..++|+.+||.+.++..
T Consensus 8 ~~~F~~L~~~l~~~l~-~~~~~~l~~~Y~~---~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLP-PSKMDLLQKHYEE---FKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHCC-HHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHH
Confidence 5778888888877765 3444444444443 356789999998888764
No 236
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=47.49 E-value=53 Score=24.72 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.6
Q ss_pred cCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 36 MDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 36 D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
..|.+|++..++|...++..+ ..++.+++++++..-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~-~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAY-KWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHcc-CCCCHHHHHHHHHcCC
Confidence 467889999999999987666 6799999999987533
No 237
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=47.13 E-value=12 Score=30.11 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 048355 45 FESLKKNSAL 54 (243)
Q Consensus 45 ~~el~~~l~~ 54 (243)
.+|+.+.+..
T Consensus 82 f~e~~e~~~k 91 (295)
T TIGR01478 82 YEQLQELVEK 91 (295)
T ss_pred HHHHHHHHHh
Confidence 4555555554
No 238
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=46.73 E-value=75 Score=21.11 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~ 72 (243)
+.+.+..+|..+-. .+...+.+++++.+| +++.+|+.+-...
T Consensus 2 ~~~~l~~~f~~i~~----~V~~~~Wk~laR~LG---Lse~~I~~i~~~~ 43 (96)
T cd08315 2 PQETLRRSFDHFIK----EVPFDSWNRLMRQLG---LSENEIDVAKANE 43 (96)
T ss_pred cHhHHHHHHHHHHH----HCCHHHHHHHHHHcC---CCHHHHHHHHHHC
Confidence 34567777776632 366788889999998 8888888877654
No 239
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=46.41 E-value=96 Score=21.38 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 29 CNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 29 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
..+|-+.-.-++..+|.++++.+++..| .......+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaG-veVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVN-ADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHc
Confidence 3445555556666678888888888877 6777777777777664
No 240
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=46.34 E-value=18 Score=22.54 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.9
Q ss_pred eeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 43 ITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 43 i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
++...|-.++. ..++.+.++.+...++.=+.++|+-+||+..+...
T Consensus 9 ~~F~~L~~~l~----~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 9 MPFPMLFSALS----KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred ccHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 44444444443 34666666666666655567899999999988764
No 241
>PTZ00370 STEVOR; Provisional
Probab=46.29 E-value=13 Score=30.05 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=6.3
Q ss_pred HHHHHHHhhhcC
Q 048355 26 GELCNGFNLLMD 37 (243)
Q Consensus 26 ~~~~~~F~~~D~ 37 (243)
.+++++.+.||.
T Consensus 57 pemK~i~d~~n~ 68 (296)
T PTZ00370 57 PELKEIIDKMNE 68 (296)
T ss_pred HHHHHHHHHHhH
Confidence 355555555553
No 242
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=46.20 E-value=43 Score=20.14 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=17.0
Q ss_pred ceeHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q 048355 42 VITFESLKKNSALLGLQDLSDDDLKCMLKE 71 (243)
Q Consensus 42 ~i~~~el~~~l~~~g~~~~~~~e~~~~~~~ 71 (243)
.+|.+|+.+.+..++ ..++..++-.++..
T Consensus 9 ~lTeEEl~~~i~~L~-~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 9 KLSKEELNELINSLD-EIPNRNDMLIIWNQ 37 (61)
T ss_pred HccHHHHHHHHHhhc-CCCCHHHHHHHHHH
Confidence 355666666666666 55666665555544
No 243
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=46.16 E-value=17 Score=30.35 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=24.8
Q ss_pred cCccccCC---------CCCCcEEEEEEecc-c-ccccHHHHHHHHHHh
Q 048355 204 NNKLGEEH---------TSGEQEISVKRLSK-I-SEQGLKELKNEVILF 241 (243)
Q Consensus 204 ~n~iG~G~---------l~~g~~vAVK~l~~-~-~~~~~~~F~~Ev~~L 241 (243)
...||+|. -.+|+.|||||+.. . +.-..+.=.+|+..|
T Consensus 27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklL 75 (359)
T KOG0660|consen 27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLL 75 (359)
T ss_pred cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHH
Confidence 35689998 46789999999952 2 222234445677665
No 244
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=44.53 E-value=11 Score=29.95 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=30.1
Q ss_pred cCCCccCccccCC-----C----CCCcEEEEEEecccc---cccHHHHHHHHHHh
Q 048355 199 DNFSINNKLGEEH-----T----SGEQEISVKRLSKIS---EQGLKELKNEVILF 241 (243)
Q Consensus 199 ~~f~~~n~iG~G~-----l----~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~L 241 (243)
++|.-...+|+|. + .++-.||+|.+.... .+-.+++.+||++-
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIq 76 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQ 76 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEee
Confidence 4477778899987 2 467799999995432 33456788888753
No 245
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=44.36 E-value=1.2e+02 Score=21.92 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=28.6
Q ss_pred eeHHHHHHHHHHcCCCCCCHHHHHHHHHh----------cCCCCCCcccHHHHHH
Q 048355 43 ITFESLKKNSALLGLQDLSDDDLKCMLKE----------GDFDCDGALNQMEFCV 87 (243)
Q Consensus 43 i~~~el~~~l~~~g~~~~~~~e~~~~~~~----------~d~~~~g~i~~~ef~~ 87 (243)
|...=+.+-+.++| ...+++|+..++.. +=.+.+|.++...|..
T Consensus 90 V~~~ll~~e~eklG-i~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~ 143 (145)
T PF13623_consen 90 VQNILLEQEFEKLG-ITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQ 143 (145)
T ss_pred HHHHHHHHHHHHhC-CccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHh
Confidence 44555666777889 88899998888821 1134567766665544
No 246
>PF15345 TMEM51: Transmembrane protein 51
Probab=44.31 E-value=36 Score=26.62 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=4.5
Q ss_pred eHHHHHHH
Q 048355 190 ELAAISNA 197 (243)
Q Consensus 190 ~~~~i~~a 197 (243)
+|+|++..
T Consensus 126 SYEEvv~s 133 (233)
T PF15345_consen 126 SYEEVVNS 133 (233)
T ss_pred ChHHHHhc
Confidence 56666543
No 247
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=44.08 E-value=40 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=12.7
Q ss_pred CCcccHHHHHHHHHhhc
Q 048355 3 AASRNFEDCLPLMANKL 19 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~ 19 (243)
.|+++|+.++.-|....
T Consensus 175 ~geldFn~iL~~Mk~~~ 191 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQV 191 (246)
T ss_pred cCCCcHHHHHHHHHHhh
Confidence 46788888888877554
No 248
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=43.97 E-value=31 Score=21.72 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=11.1
Q ss_pred CCceeHHHHHHHHHH
Q 048355 40 KGVITFESLKKNSAL 54 (243)
Q Consensus 40 ~G~i~~~el~~~l~~ 54 (243)
.|++..+|+..++..
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 578888888777754
No 249
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=43.79 E-value=28 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=21.3
Q ss_pred CCcEEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
++..+|||.+...... ..+.|..|++.|.
T Consensus 32 ~~~~~avK~~~~~~~~~~~~~~~~ei~~l~ 61 (284)
T cd05038 32 TGEQVAVKSLNHSGEEQHRSDFEREIEILR 61 (284)
T ss_pred CceEEEEEEeccccchHHHHHHHHHHHHHH
Confidence 5788999999654332 3567999998774
No 250
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=43.61 E-value=1.1e+02 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=16.5
Q ss_pred CCCceeHHHHHHHHHHcCCCCCCHHHHHHH
Q 048355 39 DKGVITFESLKKNSALLGLQDLSDDDLKCM 68 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g~~~~~~~e~~~~ 68 (243)
+.-.|+.++...++...| ++++.+..+
T Consensus 112 ~~~~V~~~~w~~l~~~~g---~~~~~m~~w 138 (172)
T cd04790 112 EQRLVTKEKWVAILKAAG---MDEADMRRW 138 (172)
T ss_pred ccccCCHHHHHHHHHHcC---CChHHHHHH
Confidence 344577777777777776 444444433
No 251
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=43.53 E-value=1.2e+02 Score=21.62 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHhhcCC---CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 4 ASRNFEDCLPLMANKLGG---DGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 4 g~i~f~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
..++.++|+.=+++.... .+....+..+|+.++.+ |+..|+.++...+
T Consensus 74 ~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r~----Is~gei~~v~s~L 124 (135)
T COG5502 74 LPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKRH----ISPGEIDKVRSRL 124 (135)
T ss_pred CcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHh----CCHHHHHHHHHHC
Confidence 456777887766655432 33344455777776543 6777777766554
No 252
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=43.17 E-value=30 Score=27.18 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 212 TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 212 l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
..++..||||.+........+.|.+|++++.
T Consensus 30 ~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~ 60 (268)
T cd06624 30 LSTQVRIAIKEIPERDSRYVQPLHEEIALHS 60 (268)
T ss_pred cCCCcEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 4467889999987655555678999998775
No 253
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=42.42 E-value=20 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=26.0
Q ss_pred ccccCC---------CCCCcEEEEEEecccccccH---HHHHHHHHHhc
Q 048355 206 KLGEEH---------TSGEQEISVKRLSKISEQGL---KELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~---------l~~g~~vAVK~l~~~~~~~~---~~F~~Ev~~Lg 242 (243)
.+|+|. -..|..||||.+..+...+. -....||++++
T Consensus 60 tLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMS 108 (668)
T KOG0611|consen 60 TLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMS 108 (668)
T ss_pred HhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHh
Confidence 478886 25799999999965543333 33578998876
No 254
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=41.80 E-value=62 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=5.5
Q ss_pred CcccHHHHHHHHHh
Q 048355 78 GALNQMEFCVLMFR 91 (243)
Q Consensus 78 g~i~~~ef~~~~~~ 91 (243)
|.|+.+|=+.++..
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 33444444433333
No 255
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=41.13 E-value=77 Score=28.19 Aligned_cols=53 Identities=9% Similarity=-0.111 Sum_probs=40.9
Q ss_pred CCcccHHHHHHHHHhhcCC--CChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc
Q 048355 3 AASRNFEDCLPLMANKLGG--DGLIGELCNGFNLLMDADKGVITFESLKKNSALL 55 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~--~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 55 (243)
+|.++..+...++...... ....+++++.....+.|.+|.|+.+||..++-.+
T Consensus 32 ~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 32 KGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred CCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 6788888888877644322 2235789999999999999999999999876544
No 256
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=41.10 E-value=19 Score=32.42 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=23.5
Q ss_pred HhcCCCccCccccCC---------CCC----CcEEEEEEecc
Q 048355 197 ATDNFSINNKLGEEH---------TSG----EQEISVKRLSK 225 (243)
Q Consensus 197 aT~~f~~~n~iG~G~---------l~~----g~~vAVK~l~~ 225 (243)
.+++|...++||+|+ ..+ +..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 567788889999998 345 78999999853
No 257
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=40.41 E-value=31 Score=22.12 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=20.0
Q ss_pred CCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 39 DKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
..|+||.+++..+|... .++.+.++.++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~---~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED---DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S------HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc---CCCHHHHHHHHHHHH
Confidence 36889999999888653 477788888877654
No 258
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=40.25 E-value=33 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCcEEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
++..||||.+...... ..+.|.+|+++|.
T Consensus 34 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~ 63 (280)
T cd05049 34 DKELVAVKTLKETASNDARKDFEREAELLT 63 (280)
T ss_pred CcceEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 4578999999654433 4578999998874
No 259
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=40.00 E-value=89 Score=20.02 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcchh
Q 048355 39 DKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPELM 97 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 97 (243)
++|.|+.++...+.. .+-+.+.+++++..... -|...|.-|+..+....+.+.
T Consensus 26 ~~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~L~ 78 (82)
T cd08330 26 GKKVITQEQYSEVRA----EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPYLV 78 (82)
T ss_pred HCCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChHHH
Confidence 357888887777653 24567778888887654 578999999999987666554
No 260
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.39 E-value=9.6 Score=31.20 Aligned_cols=6 Identities=33% Similarity=0.633 Sum_probs=2.3
Q ss_pred HHHHHh
Q 048355 160 LSIILD 165 (243)
Q Consensus 160 ~~~~~~ 165 (243)
+.+++|
T Consensus 275 IYLILR 280 (299)
T PF02009_consen 275 IYLILR 280 (299)
T ss_pred HHHHHH
Confidence 333343
No 261
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=38.82 E-value=75 Score=18.01 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q 048355 25 IGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKE 71 (243)
Q Consensus 25 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~ 71 (243)
...|..+|. .+. +.+.++...+...+| ++...|..+|..
T Consensus 12 ~~~L~~~f~---~~~--~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (56)
T smart00389 12 LEELEKEFQ---KNP--YPSREEREELAAKLG---LSERQVKVWFQN 50 (56)
T ss_pred HHHHHHHHH---hCC--CCCHHHHHHHHHHHC---cCHHHHHHhHHH
Confidence 344555554 333 788999999998888 888889888875
No 262
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=37.09 E-value=31 Score=29.53 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=26.2
Q ss_pred ccccCC-CCCCcEEEEEEeccc--ccccHHHHHHHHHHhc
Q 048355 206 KLGEEH-TSGEQEISVKRLSKI--SEQGLKELKNEVILFS 242 (243)
Q Consensus 206 ~iG~G~-l~~g~~vAVK~l~~~--~~~~~~~F~~Ev~~Lg 242 (243)
++.+|. -.+|..||||.+... +....+-..+|+.+|.
T Consensus 25 vVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLk 64 (429)
T KOG0595|consen 25 VVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILK 64 (429)
T ss_pred EEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHH
Confidence 556666 557799999999654 3334556789998874
No 263
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=36.86 E-value=1e+02 Score=22.09 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCceeHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCC
Q 048355 40 KGVITFESLKKNSAL-LGLQDLSDDDLKCMLKEGDFD 75 (243)
Q Consensus 40 ~G~i~~~el~~~l~~-~g~~~~~~~e~~~~~~~~d~~ 75 (243)
.+.|+.+.|+.+|+. +. .++|++-...+|..+-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe-~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLE-VDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT--S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCc
Confidence 458999999999986 56 578888899999888654
No 264
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=36.60 E-value=1.6e+02 Score=21.00 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCC
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDC 76 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~ 76 (243)
.+..|-+.+...+--.-+.+.=..+|+.-| ++++||+++++....+.
T Consensus 5 li~~A~~FL~~p~V~~sp~~~k~~FL~sKG---Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 5 LIEQAVKFLQDPKVRNSPLEKKIAFLESKG---LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHCTTTCCCS-HHHHHHHHHHCT-----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHhCCcccccCCHHHHHHHHHcCC---CCHHHHHHHHHhcCCcc
Confidence 344455555444444445666678888877 99999999999877553
No 265
>PHA03265 envelope glycoprotein D; Provisional
Probab=36.56 E-value=34 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHhhcCC
Q 048355 151 PAIEEDLFILSIILDKTGN 169 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (243)
++++++.+++.+++++++.
T Consensus 359 ~glv~vg~il~~~~rr~k~ 377 (402)
T PHA03265 359 AGLVLVGVILYVCLRRKKE 377 (402)
T ss_pred hhhhhhhHHHHHHhhhhhh
Confidence 3444445555555554443
No 266
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=35.31 E-value=54 Score=29.46 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred CCCccCccccCC--------CCC-CcEEEEEEeccc
Q 048355 200 NFSINNKLGEEH--------TSG-EQEISVKRLSKI 226 (243)
Q Consensus 200 ~f~~~n~iG~G~--------l~~-g~~vAVK~l~~~ 226 (243)
.|++ .-||.|+ +.+ |+.||||.+.+.
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 3665 5789888 566 999999999753
No 267
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=35.08 E-value=59 Score=26.92 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=24.8
Q ss_pred CccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
-.+|.|. -.+|.+||||+.--. ...++...|+-++
T Consensus 39 ~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIM 82 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIM 82 (502)
T ss_pred HHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHH
Confidence 3688887 257999999998422 2446777887664
No 268
>PHA02105 hypothetical protein
Probab=34.71 E-value=87 Score=18.57 Aligned_cols=49 Identities=12% Similarity=-0.092 Sum_probs=28.4
Q ss_pred ceeHHHHHHHHHHcCC--CCCCHHHHHHHHHhcCCCCC--CcccHHHHHHHHH
Q 048355 42 VITFESLKKNSALLGL--QDLSDDDLKCMLKEGDFDCD--GALNQMEFCVLMF 90 (243)
Q Consensus 42 ~i~~~el~~~l~~~g~--~~~~~~e~~~~~~~~d~~~~--g~i~~~ef~~~~~ 90 (243)
+++.+|++.++..-.- .++..+-++++-..+....- -.++|+||-.++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 4677777777754310 34555555665555544322 3678899876553
No 269
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=34.71 E-value=53 Score=25.65 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=21.8
Q ss_pred CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 212 TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 212 l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
..+|..||||.+..........+..|+..|.
T Consensus 31 ~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~ 61 (267)
T cd06646 31 LHTGELAAVKIIKLEPGDDFSLIQQEIFMVK 61 (267)
T ss_pred CCCCeEEEEEEEecCccchHHHHHHHHHHHH
Confidence 5578899999996443334456778887764
No 270
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.58 E-value=28 Score=33.06 Aligned_cols=63 Identities=21% Similarity=0.087 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
..+...|+..|..++|.|+..+-..++...| ++..-+-+++...|..+-|.++..+|...+..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~---L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG---LPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc---cchhhhhccccccccccCCccccccccccchH
Confidence 4567789999999999999999999998876 88888888888889888899999999877654
No 271
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=33.40 E-value=55 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
++..||||.+.... ......|..|+++|.
T Consensus 32 ~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~ 61 (283)
T cd05080 32 TGEMVAVKTLKRECGQQNTSGWKKEINILK 61 (283)
T ss_pred CCceEEEEEeccccChHHHHHHHHHHHHHH
Confidence 66789999986432 234567899998875
No 272
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=33.22 E-value=35 Score=29.84 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=26.7
Q ss_pred CccccCC--------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 205 NKLGEEH--------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~--------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
+.||+|- ..+-..||||.+... .....+|..|+++|-
T Consensus 212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk 256 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMK 256 (468)
T ss_pred HHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHH
Confidence 4689987 333448999999644 445678999998873
No 273
>PLN03150 hypothetical protein; Provisional
Probab=32.76 E-value=45 Score=30.54 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=7.8
Q ss_pred hcCCCCCCcCCC
Q 048355 109 FTDISQRPLLSG 120 (243)
Q Consensus 109 ~~d~~~~~~~~~ 120 (243)
..++.+|+.+|+
T Consensus 519 ~l~~~~N~~lc~ 530 (623)
T PLN03150 519 SFNFTDNAGLCG 530 (623)
T ss_pred eEEecCCccccC
Confidence 446667777776
No 274
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=32.49 E-value=1.2e+02 Score=20.25 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=20.5
Q ss_pred eeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Q 048355 43 ITFESLKKNSALLGLQDLSDDDLKCMLKEGDFD 75 (243)
Q Consensus 43 i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~ 75 (243)
+...+..-++..+. ..++++|+.++...+-.+
T Consensus 20 vP~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~ 51 (96)
T PF11829_consen 20 VPPTDYVPLLALLR-RRLTDDEVAEVAAELAAR 51 (96)
T ss_dssp B-HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhc-ccCCHHHHHHHHHHHHhc
Confidence 55666667777777 678888877777666333
No 275
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=32.26 E-value=27 Score=26.64 Aligned_cols=27 Identities=7% Similarity=-0.122 Sum_probs=22.8
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHH
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNS 52 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l 52 (243)
.-+...|...|.|+||+|+.+|-...+
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhccc
Confidence 357788999999999999999877655
No 276
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=32.24 E-value=1.2e+02 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=32.5
Q ss_pred CCCCceeHHHHH---HHHHHcCCCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 048355 38 ADKGVITFESLK---KNSALLGLQDLSDDD---LKCMLKEGDFDCDGALNQMEFCVLMFRL 92 (243)
Q Consensus 38 ~~~G~i~~~el~---~~l~~~g~~~~~~~e---~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 92 (243)
.-||.++..|.. .++..++ +++++ +.++|+... ....++.+|+..+...
T Consensus 67 kADG~Vse~Ei~~~~~l~~~~~---l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 67 KAKGRVTEADIRIASQLMDRMN---LHGEARRAAQQAFREGK---EPDFPLREKLRQFRSV 121 (267)
T ss_pred hcCCCcCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHH
Confidence 448999999986 2333445 66666 556666543 3448889998887654
No 277
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=32.09 E-value=1.1e+02 Score=28.08 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=13.8
Q ss_pred CCCCCceeHHHHHHHHHHc
Q 048355 37 DADKGVITFESLKKNSALL 55 (243)
Q Consensus 37 ~~~~G~i~~~el~~~l~~~ 55 (243)
+|+.|++.--+.-..|.+|
T Consensus 84 r~~~~~LnGt~~S~lL~~L 102 (684)
T PF12877_consen 84 RNGSGFLNGTEVSELLRQL 102 (684)
T ss_pred ecCceeeccHHHHHHHHhh
Confidence 5778888877777777654
No 278
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=31.46 E-value=57 Score=31.68 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=28.2
Q ss_pred cCccccCC--------C--CCC----cEEEEEEeccc-ccccHHHHHHHHHHhcC
Q 048355 204 NNKLGEEH--------T--SGE----QEISVKRLSKI-SEQGLKELKNEVILFSK 243 (243)
Q Consensus 204 ~n~iG~G~--------l--~~g----~~vAVK~l~~~-~~~~~~~F~~Ev~~Lg~ 243 (243)
.+.||+|. + .+| ..||||.|... +.+...+|..|-.++++
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~ 751 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSK 751 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhc
Confidence 46899998 1 123 35999999654 45556789999887763
No 279
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=31.32 E-value=1.7e+02 Score=19.98 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=27.3
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 30 NGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 30 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
.+|-+.-..++..+|.++++.+++..| .......+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaG-veVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVG-VEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHc
Confidence 344455555666677777777777777 6666666666666553
No 280
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=31.11 E-value=32 Score=31.57 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=9.1
Q ss_pred CCCceeHHHHHHH
Q 048355 185 ELPLFELAAISNA 197 (243)
Q Consensus 185 ~~~~~~~~~i~~a 197 (243)
.-..|.|+|+++.
T Consensus 649 ~dttfaYQeLCRq 661 (1004)
T KOG0793|consen 649 ADTTFAYQELCRQ 661 (1004)
T ss_pred ccchHHHHHHHHH
Confidence 3445889999744
No 281
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=31.03 E-value=45 Score=29.62 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.0
Q ss_pred HhcCCCccCccccCC---------CCCCcEEEEEEecccc
Q 048355 197 ATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS 227 (243)
Q Consensus 197 aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~ 227 (243)
..++|.---+||+|+ -..|.++|.|+|....
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~ 178 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSE 178 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHH
Confidence 445677677999999 3579999999996554
No 282
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=30.52 E-value=21 Score=25.26 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=34.0
Q ss_pred CCCceeHHHHHHHHHHc--CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 39 DKGVITFESLKKNSALL--GLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~--g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
-||.++.+|...+...+ . ..++..+...++..++.......++.+|+..+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAER-FGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHC-GCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 47899999987776654 2 2466777777777766544456778888776654
No 283
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.41 E-value=85 Score=22.61 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHHhhhcCCCCCceeHHHH---HHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 30 NGFNLLMDADKGVITFESL---KKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 30 ~~F~~~D~~~~G~i~~~el---~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
-.|++.+.| |.++..|. +.+++.. ..++..+++.++.....-+...+++-.|...+..
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~--f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKEN--FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 568887665 56777665 4444432 3589999999998776666678998899887774
No 284
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=30.32 E-value=15 Score=18.62 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHhcCCCCCCcccHH
Q 048355 66 KCMLKEGDFDCDGALNQM 83 (243)
Q Consensus 66 ~~~~~~~d~~~~g~i~~~ 83 (243)
+.++.+-|.|+|-+|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 345556677777666654
No 285
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=30.24 E-value=77 Score=20.73 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.5
Q ss_pred eeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 43 ITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 43 i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
|+.++++++.+... ..++++|++.+...++
T Consensus 1 i~~~~v~~lA~La~-L~l~eee~~~~~~~l~ 30 (93)
T TIGR00135 1 ISDEEVKHLAKLAR-LELSEEEAESFAGDLD 30 (93)
T ss_pred CCHHHHHHHHHHhC-CCCCHHHHHHHHHHHH
Confidence 56788888877766 6799999998887664
No 286
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=30.22 E-value=53 Score=28.91 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=26.5
Q ss_pred CccccCC----------CCCC--cE-EEEEEeccc---ccccHHHHHHHHHHhc
Q 048355 205 NKLGEEH----------TSGE--QE-ISVKRLSKI---SEQGLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~----------l~~g--~~-vAVK~l~~~---~~~~~~~F~~Ev~~Lg 242 (243)
.+||+|. ..++ .. ||||..... .....++|.+|.+++.
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr 216 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMR 216 (474)
T ss_pred ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHH
Confidence 5899998 3444 23 899998642 2334578999998874
No 287
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=29.91 E-value=1.8e+02 Score=20.42 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=38.1
Q ss_pred CCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHc-CCCCCCHHHHHHHHHhcCC
Q 048355 20 GGDGLIGELCNGFNLLMDADKGVITFESLKKNSALL-GLQDLSDDDLKCMLKEGDF 74 (243)
Q Consensus 20 ~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~e~~~~~~~~d~ 74 (243)
++..-.+++..+|++|..+ .|+.+.+-.++... | .++|..+++.+...+-.
T Consensus 31 ~d~tf~~Kl~~Il~mFl~~---eid~e~~y~l~~~~d~-~~LT~~Qi~Yl~~~~~~ 82 (122)
T PF06648_consen 31 RDETFLDKLIKILKMFLND---EIDVEDMYNLFGAVDG-LKLTRSQIDYLYNRVYN 82 (122)
T ss_pred cCchHHHHHHHHHHHHHhC---CCCHHHHHHHHhcccH-hhcCHHHHHHHHHHHHc
Confidence 3344557888999988754 58889888888766 5 57888888887776543
No 288
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=29.83 E-value=61 Score=25.64 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
++..+|+|.+..........|.+|+++|.
T Consensus 34 ~~~~~~~k~~~~~~~~~~~~~~~e~~~l~ 62 (280)
T cd05092 34 DKMLVAVKALKEASESARQDFQREAELLT 62 (280)
T ss_pred CceEEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 56789999987555555678999998875
No 289
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=29.59 E-value=95 Score=19.27 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHc----CCCCCCHHHHHHHHHhc
Q 048355 26 GELCNGFNLLMDADKGVITFESLKKNSALL----GLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 26 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~~~~~~e~~~~~~~~ 72 (243)
+.+..+...++..-+--+-..+|+.++..+ | ...+++-++.+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG-~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITG-EVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCT-SS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHhh
Confidence 455666666665555556677777777654 6 566666678888765
No 290
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=29.51 E-value=68 Score=25.82 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=26.2
Q ss_pred CCccCccccCCC----------------CCCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 201 FSINNKLGEEHT----------------SGEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 201 f~~~n~iG~G~l----------------~~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
+.-...||+|+. ..+..+|+|.+.... .....++..|++++.
T Consensus 20 ~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~ 78 (307)
T cd05098 20 LVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 78 (307)
T ss_pred eEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHH
Confidence 444457888871 123579999996432 223456888887763
No 291
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=29.47 E-value=2.1e+02 Score=25.57 Aligned_cols=21 Identities=5% Similarity=-0.008 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCCccCccccCC
Q 048355 191 LAAISNATDNFSINNKLGEEH 211 (243)
Q Consensus 191 ~~~i~~aT~~f~~~n~iG~G~ 211 (243)
+......+..+...++||+|+
T Consensus 325 ~~~~~~~~~~~~~~~~iG~G~ 345 (535)
T PRK09605 325 WIKEEEVKRRKIPDHLIGKGA 345 (535)
T ss_pred eccccccccccCccceeccCC
Confidence 333334445556678999999
No 292
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.40 E-value=79 Score=29.04 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=30.8
Q ss_pred HhcCCCccCccccCC---------CCCCcEEEEEEecccc---cccHHHHHHHHHHh
Q 048355 197 ATDNFSINNKLGEEH---------TSGEQEISVKRLSKIS---EQGLKELKNEVILF 241 (243)
Q Consensus 197 aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~---~~~~~~F~~Ev~~L 241 (243)
..++|.=..++|+|. -++++..|||.|.+.. .....+-..|-+++
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~ 422 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIF 422 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHH
Confidence 345677677999998 2567899999997653 22345566676655
No 293
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=28.99 E-value=1.4e+02 Score=19.35 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=9.3
Q ss_pred cccHHHHHHHHHhh
Q 048355 5 SRNFEDCLPLMANK 18 (243)
Q Consensus 5 ~i~f~ef~~~~~~~ 18 (243)
.++|++++.-+...
T Consensus 19 ~~s~e~L~~~v~~~ 32 (83)
T cd06404 19 SISLEELCNEVRDM 32 (83)
T ss_pred CcCHHHHHHHHHHH
Confidence 56778777766544
No 294
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=28.83 E-value=68 Score=19.36 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=17.7
Q ss_pred ceeHHHHHHHHHHcCCCCCCHHHHHH
Q 048355 42 VITFESLKKNSALLGLQDLSDDDLKC 67 (243)
Q Consensus 42 ~i~~~el~~~l~~~g~~~~~~~e~~~ 67 (243)
.|+.++|..+|+... ..++.+++++
T Consensus 29 ~it~~DF~~Al~~~k-pSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVK-PSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCG-GSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHH
Confidence 477888888888876 6677777654
No 295
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=27.62 E-value=45 Score=26.77 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=22.7
Q ss_pred CccccCC---------CCCCcEEEEEEecccccccHHHHHHHHH
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVI 239 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~ 239 (243)
..+|.|| +.++...|+||+.-.+..+.+.-..|++
T Consensus 27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid 70 (302)
T KOG2345|consen 27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREID 70 (302)
T ss_pred eeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHH
Confidence 3678888 6788999999995444344344444443
No 296
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=27.44 E-value=65 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
++..+|||.+........+.|..|+++|.
T Consensus 34 ~~~~~~ik~~~~~~~~~~~~~~~e~~~l~ 62 (288)
T cd05093 34 DKILVAVKTLKDASDNARKDFHREAELLT 62 (288)
T ss_pred cceEEEEEecCCcCHHHHHHHHHHHHHHH
Confidence 45679999996555445667999998875
No 297
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.23 E-value=2.4e+02 Score=27.12 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 46 ESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 46 ~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
+.+..++..+. +..+++++|..+..++..+++.++++.++..
T Consensus 208 e~f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 208 EKFYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred HHHHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhh
Confidence 33455555554 3368999999999888889999999999875
No 298
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=27.15 E-value=72 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=20.3
Q ss_pred CCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
.+..||||.+.... .....+|..|+++|.
T Consensus 45 ~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~ 74 (304)
T cd05096 45 RPLLVAVKILRPDANKNARNDFLKEVKILS 74 (304)
T ss_pred cceEEEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 45689999996532 223467999998875
No 299
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=27.01 E-value=37 Score=28.46 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCccCccccCC---------CCCCcEEEEEEeccccc---ccHHHHHHHHHHhc
Q 048355 200 NFSINNKLGEEH---------TSGEQEISVKRLSKISE---QGLKELKNEVILFS 242 (243)
Q Consensus 200 ~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~---~~~~~F~~Ev~~Lg 242 (243)
.|.--++||+|+ -..|+..|.|.|..... ...+.-.+|..+|.
T Consensus 26 dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~ 80 (357)
T KOG0598|consen 26 DFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILS 80 (357)
T ss_pred heeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHH
Confidence 367778999999 35678889999865321 12344667777764
No 300
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.68 E-value=2e+02 Score=24.98 Aligned_cols=81 Identities=9% Similarity=-0.116 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHhhcC---CCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCccc
Q 048355 6 RNFEDCLPLMANKLG---GDGLIGELCNGFNLLMDADKGVITFESLKKNSAL-LGLQDLSDDDLKCMLKEGDFDCDGALN 81 (243)
Q Consensus 6 i~f~ef~~~~~~~~~---~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-~g~~~~~~~e~~~~~~~~d~~~~g~i~ 81 (243)
..-.||+.+-+.... +.-..+.++.+-+.+|.|++|-|+.+|=-.+|+. +. +.-+...=.+- |-. .|..|+
T Consensus 45 at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk-y~~~~~kr~~~---fH~-dD~~It 119 (575)
T KOG4403|consen 45 ATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMK-YRDSTRKRSEK---FHG-DDKHIT 119 (575)
T ss_pred hhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhh-cccchhhhhhh---ccC-Ccccee
Confidence 344566554432222 1234578999999999999999999998887764 33 11111111112 222 356788
Q ss_pred HHHHHHHHHh
Q 048355 82 QMEFCVLMFR 91 (243)
Q Consensus 82 ~~ef~~~~~~ 91 (243)
.++.-..+..
T Consensus 120 VedLWeaW~~ 129 (575)
T KOG4403|consen 120 VEDLWEAWKE 129 (575)
T ss_pred HHHHHHHHHh
Confidence 8887766654
No 301
>PHA03211 serine/threonine kinase US3; Provisional
Probab=26.31 E-value=68 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=25.8
Q ss_pred cCCCccCccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 199 DNFSINNKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 199 ~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
.+|.-...||+|+ ...+..||||.... ..+.+|+++|.
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~ 215 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLR 215 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHH
Confidence 3466667899988 24578899997532 24667887764
No 302
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.03 E-value=70 Score=16.43 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=6.9
Q ss_pred CCcccHHHHHHHH
Q 048355 3 AASRNFEDCLPLM 15 (243)
Q Consensus 3 ~g~i~f~ef~~~~ 15 (243)
+|.|++++++.+.
T Consensus 2 ~~~i~~~~~~d~a 14 (33)
T PF09373_consen 2 SGTISKEEYLDMA 14 (33)
T ss_pred CceecHHHHHHHH
Confidence 3455555555544
No 303
>smart00090 RIO RIO-like kinase.
Probab=25.92 E-value=1e+02 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.2
Q ss_pred CccccCC-------C---CCCcEEEEEEecc
Q 048355 205 NKLGEEH-------T---SGEQEISVKRLSK 225 (243)
Q Consensus 205 n~iG~G~-------l---~~g~~vAVK~l~~ 225 (243)
..||+|+ . .+|..||||....
T Consensus 34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~ 64 (237)
T smart00090 34 GCISTGKEANVYHALDFDGSGKERAVKIYRT 64 (237)
T ss_pred CeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence 3688887 2 4789999999854
No 304
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=25.81 E-value=96 Score=25.43 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=27.5
Q ss_pred CCCccCccccCC---------CCCCcEEEEEEecccc--ccc--HH----HHHHHHHHhc
Q 048355 200 NFSINNKLGEEH---------TSGEQEISVKRLSKIS--EQG--LK----ELKNEVILFS 242 (243)
Q Consensus 200 ~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~--~~~--~~----~F~~Ev~~Lg 242 (243)
++.++.++|+|+ =+.|...|||++.... .++ .. +=..||.+|.
T Consensus 18 ~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILR 77 (411)
T KOG0599|consen 18 KYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILR 77 (411)
T ss_pred hcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHH
Confidence 356677999998 2568899999984321 111 22 3357777764
No 305
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.57 E-value=52 Score=23.38 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=11.4
Q ss_pred CCcccHHHHHHHHHh
Q 048355 3 AASRNFEDCLPLMAN 17 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~ 17 (243)
+|..+|+||+..++.
T Consensus 86 sGqttF~ef~~~la~ 100 (137)
T COG5562 86 SGQTTFEEFCSALAE 100 (137)
T ss_pred cCCccHHHHHHHHHh
Confidence 577888888887753
No 306
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=25.55 E-value=1.1e+02 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=24.8
Q ss_pred eHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC
Q 048355 44 TFESLKKNSALLGLQDLSDDDLKCMLKEGDF 74 (243)
Q Consensus 44 ~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~ 74 (243)
|.++...+...+. .++|++|++.+++.++.
T Consensus 28 T~eDV~~~a~gme-~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 28 TREDVRALADGME-YNLTDDEARAVLARIGD 57 (139)
T ss_pred cHHHHHHHHhcCC-CCCCHHHHHHHHHHHhc
Confidence 7888888877666 78999999999988764
No 307
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=25.44 E-value=1.1e+02 Score=20.06 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=25.0
Q ss_pred ceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 048355 42 VITFESLKKNSALLGLQDLSDDDLKCMLKEGD 73 (243)
Q Consensus 42 ~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d 73 (243)
.|+.++++++.+... ..+++++++.+...++
T Consensus 2 ~i~~e~i~~la~La~-l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 2 AITREEVKHLAKLAR-LELSEEELEKFAGQLN 32 (95)
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHH
Confidence 478888999888777 7899999988877654
No 308
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=25.39 E-value=2e+02 Score=18.83 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=24.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 048355 40 KGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFR 91 (243)
Q Consensus 40 ~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~ 91 (243)
||.++..|...+-..+.-.+.+..+..++...+..-.+...++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 6777777765543332101233333333333322222222567777776665
No 309
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=25.26 E-value=75 Score=28.96 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 048355 82 QMEFCVLMFR 91 (243)
Q Consensus 82 ~~ef~~~~~~ 91 (243)
|.+|...+..
T Consensus 156 ~~s~er~laq 165 (684)
T PF12877_consen 156 YQSFERRLAQ 165 (684)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 310
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=25.24 E-value=93 Score=19.94 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCce--eHHHHHHHHH
Q 048355 5 SRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVI--TFESLKKNSA 53 (243)
Q Consensus 5 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i--~~~el~~~l~ 53 (243)
.++|.+.+.++.+.++... ..+|..=|.+||..- |-+|++.++.
T Consensus 22 ~L~F~DvL~~I~~vlp~aT-----~tAFeYEDE~gDRITVRSDeEm~AMls 67 (91)
T cd06395 22 QLLFRDVLDVIGQVLPEAT-----TTAFEYEDEDGDRITVRSDEEMKAMLS 67 (91)
T ss_pred cccHHHHHHHHHHhccccc-----ccceeeccccCCeeEecchHHHHHHHH
Confidence 4899999999988876432 357887788887531 3455666654
No 311
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=25.12 E-value=1.1e+02 Score=23.64 Aligned_cols=32 Identities=28% Similarity=0.189 Sum_probs=25.8
Q ss_pred eeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCC
Q 048355 43 ITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCD 77 (243)
Q Consensus 43 i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~ 77 (243)
-..+|+.++++..| +++++.+++.+.+-.+++
T Consensus 80 ~e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 80 EEKEELVEIYRAKG---LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred hHHHHHHHHHHHCC---CCHHHHHHHHHHHHhCch
Confidence 45679999999888 889999998888766655
No 312
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.12 E-value=89 Score=24.91 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=25.8
Q ss_pred CccccCC---------CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 205 NKLGEEH---------TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 205 n~iG~G~---------l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
+.+|+|. +.+.+.+.||.|.+. ..+.-.+||.+|-
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV---kkkKIkREikIL~ 87 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIKILKPV---KKKKIKREIKILQ 87 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEeeechH---HHHHHHHHHHHHH
Confidence 5789887 567788999999643 3356778888874
No 313
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=25.00 E-value=80 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 212 TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 212 l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
..++..+|+|++........+.|..|++.+.
T Consensus 32 ~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~ 62 (291)
T cd05094 32 TKDKMLVAVKALKDPTLAARKDFQREAELLT 62 (291)
T ss_pred CCcceeeEEEecCCccHHHHHHHHHHHHHHh
Confidence 3466789999996555445577999998875
No 314
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=24.92 E-value=1.6e+02 Score=17.71 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=5.7
Q ss_pred CCCCHHHHHHHHHhc
Q 048355 58 QDLSDDDLKCMLKEG 72 (243)
Q Consensus 58 ~~~~~~e~~~~~~~~ 72 (243)
.+++.+|+..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 13 EDLSREEAKAAFDAI 27 (66)
T ss_dssp ----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 445555555555443
No 315
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=24.76 E-value=85 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCcEEEEEEecccccccHHHHHHHHHHhc
Q 048355 212 TSGEQEISVKRLSKISEQGLKELKNEVILFS 242 (243)
Q Consensus 212 l~~g~~vAVK~l~~~~~~~~~~F~~Ev~~Lg 242 (243)
..+|..+|+|.+........+.|..|++.+.
T Consensus 34 ~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~ 64 (292)
T cd06644 34 KETGALAAAKVIETKSEEELEDYMVEIEILA 64 (292)
T ss_pred CCCCceEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 4567899999997655555677888987764
No 316
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=24.41 E-value=2e+02 Score=27.60 Aligned_cols=46 Identities=7% Similarity=-0.035 Sum_probs=24.9
Q ss_pred CcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHH
Q 048355 4 ASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKK 50 (243)
Q Consensus 4 g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~ 50 (243)
|.++|.+|...|.+.....+...++..+|+.+-++.. +|..+||..
T Consensus 803 ~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 803 GQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred cceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 4455666665555554444555555556665554444 555555544
No 317
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.41 E-value=3e+02 Score=20.40 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=30.0
Q ss_pred hhhcCCCCCceeHHHHHHHHHH----------cCCCCCCHHHHHHHHHhc
Q 048355 33 NLLMDADKGVITFESLKKNSAL----------LGLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 33 ~~~D~~~~G~i~~~el~~~l~~----------~g~~~~~~~e~~~~~~~~ 72 (243)
++||+.-+-|||.+++.++.+. .| +++|..-+.+++-+.
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsg-eDiT~sVLtQIIfEe 67 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSG-EDITHSVLTQIIFEE 67 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeecccc-chhhHHHHHHHHHHH
Confidence 4788999999999999999874 35 677777776665443
No 318
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.00 E-value=1.4e+02 Score=23.46 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=31.4
Q ss_pred hhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 048355 33 NLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEG 72 (243)
Q Consensus 33 ~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~ 72 (243)
...--|++|.+....|...+.++- .+++.+|+..+-+.+
T Consensus 158 ~i~vG~gegQVpL~kL~~~l~KLp-~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 158 DIIVGNGEGQVPLRKLQKTLMKLP-RNLTKAEVDAVNKRL 196 (224)
T ss_pred EEEecCCCCceeHHHHHHHHHhCC-ccCCHHHHHHHHHHH
Confidence 344467899999999999999998 889999888776554
No 319
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=23.12 E-value=1.3e+02 Score=26.68 Aligned_cols=45 Identities=13% Similarity=0.358 Sum_probs=29.5
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEecccc--cc------------cHHHHHHHHHHhc
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKIS--EQ------------GLKELKNEVILFS 242 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~--~~------------~~~~F~~Ev~~Lg 242 (243)
.|.|.-...||+|. ..+|+.+|||.|.... .+ ..+....||.+|-
T Consensus 96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailK 163 (576)
T KOG0585|consen 96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILK 163 (576)
T ss_pred hhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHH
Confidence 34455555789997 4689999999995421 11 1235678888774
No 320
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=22.95 E-value=98 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCCCcEEEEEEeccccc-ccHHHHHHHHHHhc
Q 048355 212 TSGEQEISVKRLSKISE-QGLKELKNEVILFS 242 (243)
Q Consensus 212 l~~g~~vAVK~l~~~~~-~~~~~F~~Ev~~Lg 242 (243)
..+++.||||++..... .....+..|+++|.
T Consensus 34 ~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~ 65 (343)
T cd05103 34 TATCRTVAVKMLKEGATHSEHRALMSELKILI 65 (343)
T ss_pred cccceeEEEEEeccCCChHHHHHHHHHHHHHH
Confidence 55788999999964322 22356888988764
No 321
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=22.93 E-value=97 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=20.8
Q ss_pred CCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
++..||||.+.... ......|..|+++|.
T Consensus 32 ~~~~va~K~~~~~~~~~~~~~~~~e~~~l~ 61 (284)
T cd05079 32 TGEQVAVKSLKPESGGNHIADLKKEIEILR 61 (284)
T ss_pred ccceEEEEEcCccccHHHHHHHHHHHHHHH
Confidence 56789999986443 333467899998775
No 322
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=22.50 E-value=1.5e+02 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 59 DLSDDDLKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 59 ~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
|-+.+|++.++...+ ..++=++.-.++
T Consensus 78 P~~~dElrai~~~~~----~~~~~e~l~~IL 104 (112)
T PRK14981 78 PETRDELRAIFAKER----YTLSPEELDEIL 104 (112)
T ss_pred CCCHHHHHHHHHHhc----cCCCHHHHHHHH
Confidence 455666777776552 234445544443
No 323
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=22.15 E-value=3.2e+02 Score=19.97 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=19.8
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 048355 38 ADKGVITFESLKKNSALLGLQDLSDDDLKCMLK 70 (243)
Q Consensus 38 ~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~ 70 (243)
+..|+|+.+.+..+-..+| ++..++..+..
T Consensus 34 ~~~G~Ip~e~~~~iA~~l~---v~~~~V~~vat 63 (156)
T PRK05988 34 DEFGYVPEDAVPVIAEALN---LSRAEVHGVIT 63 (156)
T ss_pred HHcCCCCHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 3347788887777777777 56666655443
No 324
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=22.10 E-value=1.4e+02 Score=17.17 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=18.7
Q ss_pred CCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC
Q 048355 40 KGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDF 74 (243)
Q Consensus 40 ~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~ 74 (243)
.|.|+..++++.+ | ++-..+-.+++.+|.
T Consensus 8 ~~~itv~~~rd~l---g---~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLL---G---LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHH---T---S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHH---C---ccHHHHHHHHHHHhc
Confidence 5778888888877 2 555556666666554
No 325
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=22.00 E-value=94 Score=24.35 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCcEEEEEEecccccc-cHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKISEQ-GLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~~~-~~~~F~~Ev~~Lg 242 (243)
+...||+|.+...... ..++|..|+++|.
T Consensus 34 ~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~ 63 (275)
T cd05046 34 GETLVLVKALQKTKDENLQSEFRRELDMFR 63 (275)
T ss_pred CcceEEEEccCCccchHHHHHHHHHHHHHH
Confidence 4568999999654433 3467999998875
No 326
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=21.95 E-value=1.2e+02 Score=27.47 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred hcCCCccCccccCC---------CCCCcEEEEEEecccccc--cHHHHHHHHHHh
Q 048355 198 TDNFSINNKLGEEH---------TSGEQEISVKRLSKISEQ--GLKELKNEVILF 241 (243)
Q Consensus 198 T~~f~~~n~iG~G~---------l~~g~~vAVK~l~~~~~~--~~~~F~~Ev~~L 241 (243)
+.++.-.-.||+|. ...|..||+|-.+..... ....+..||+++
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~im 109 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIM 109 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHH
Confidence 34444455788887 356899999988653322 234588898875
No 327
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=21.23 E-value=1.4e+02 Score=27.87 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048355 27 ELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMF 90 (243)
Q Consensus 27 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (243)
.+.....+||+..+|.|..-+|+-.+-.+. .-..++....+|+....++. .++-..|-.++.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~s-q~~q~~l~lLL~ 532 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTS-QCDQRRLGLLLH 532 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchh-hHHHHHHHHHHH
Confidence 466778899999999999999999888876 56667778899998765443 333444444443
No 328
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.19 E-value=3.8e+02 Score=23.36 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHHhhcCCCChHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 048355 3 AASRNFEDCLPLMANKLGGDGLIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQ 82 (243)
Q Consensus 3 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~ 82 (243)
+|.||.+|=-..|...+.-.+....-.+.|.- .|..|+.+||=++....-.++-|.+++-+++-. .+..
T Consensus 82 nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~-------~VeL 150 (575)
T KOG4403|consen 82 NGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNERTVQWLIN-------DVEL 150 (575)
T ss_pred CCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHHHHHHHHHH-------hccc
Confidence 45666655444444444434444444555553 356799999977775542145666665554432 2445
Q ss_pred HHHHHHHHh
Q 048355 83 MEFCVLMFR 91 (243)
Q Consensus 83 ~ef~~~~~~ 91 (243)
.+|+..+..
T Consensus 151 Pqyve~fk~ 159 (575)
T KOG4403|consen 151 PQYVEAFKA 159 (575)
T ss_pred HHHHHHHHh
Confidence 566655554
No 329
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=20.78 E-value=1.2e+02 Score=18.07 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=33.6
Q ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 048355 24 LIGELCNGFNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQM 83 (243)
Q Consensus 24 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ 83 (243)
.++-++.+|.+-. +.+.++..++.+.| +.+..-+.++++.+.. .|.|.++
T Consensus 6 ~e~YL~~Iy~l~~--~~~~v~~~~iA~~L------~vs~~tvt~ml~~L~~--~GlV~~~ 55 (60)
T PF01325_consen 6 EEDYLKAIYELSE--EGGPVRTKDIAERL------GVSPPTVTEMLKRLAE--KGLVEYE 55 (60)
T ss_dssp HHHHHHHHHHHHH--CTSSBBHHHHHHHH------TS-HHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHc--CCCCccHHHHHHHH------CCChHHHHHHHHHHHH--CCCEEec
Confidence 3456777787776 66788888887766 3677778888877653 3555543
No 330
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=20.78 E-value=1.5e+02 Score=25.61 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=30.4
Q ss_pred HHHHhcCCCccCccccCC---------CC---CCcEEEEEEecccccccHHHHHHHHHHh
Q 048355 194 ISNATDNFSINNKLGEEH---------TS---GEQEISVKRLSKISEQGLKELKNEVILF 241 (243)
Q Consensus 194 i~~aT~~f~~~n~iG~G~---------l~---~g~~vAVK~l~~~~~~~~~~F~~Ev~~L 241 (243)
+....+.+...|+||.|. .. ...-||+|.+...+ ....-.+|++.|
T Consensus 31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L 88 (418)
T KOG1167|consen 31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEML 88 (418)
T ss_pred hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHH
Confidence 334445577889999998 22 45689999996443 223466777665
No 331
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.73 E-value=3.5e+02 Score=19.82 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHHhhh-cCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 048355 28 LCNGFNLL-MDADKGVITFESLKKNSALLGLQDLSDDDLKCMLK 70 (243)
Q Consensus 28 ~~~~F~~~-D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~ 70 (243)
+.-.|+.| |.+.+-..+.+++.+-|...| +.++||.+.+.
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aG---F~~~eI~~Al~ 45 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAG---FEDEEINKALD 45 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 44456654 455677788999999999988 88888887664
No 332
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=20.69 E-value=1.6e+02 Score=24.71 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=38.2
Q ss_pred HhhhcCCCCCceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048355 32 FNLLMDADKGVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLM 89 (243)
Q Consensus 32 F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~ 89 (243)
...+|..+.|.++.-..+-++..+. ..--.+.++.+|.... |++|-+.+-.|..++
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 4468999999999999999888774 3344556777777653 566755544444443
No 333
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=20.68 E-value=1.3e+02 Score=19.15 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=15.8
Q ss_pred CceeHHH-------HHHHHHHcCCCCCCHHHHHHHHH
Q 048355 41 GVITFES-------LKKNSALLGLQDLSDDDLKCMLK 70 (243)
Q Consensus 41 G~i~~~e-------l~~~l~~~g~~~~~~~e~~~~~~ 70 (243)
|+|+.+. +-.+|+++| .+++++|..-+-.
T Consensus 8 GKls~d~y~~qkvEIL~ALrkLg-e~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 8 GKLSKDVYTQQKVEILTALRKLG-EKLSPEEEAFLEA 43 (78)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Confidence 5555554 445678899 9999988765544
No 334
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=20.62 E-value=2.4e+02 Score=17.91 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC-CCCcccHHHHHHHH
Q 048355 45 FESLKKNSALLGLQDLSDDDLKCMLKEGDFD-CDGALNQMEFCVLM 89 (243)
Q Consensus 45 ~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~-~~g~i~~~ef~~~~ 89 (243)
.++|.+.| .| .+.+.+.+.+.+...+.+ --+.++-+||+.++
T Consensus 44 i~~le~~L--~G-~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IG-CPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TT-CBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--Hh-cCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 56666655 45 568888888888887543 33567888887654
No 335
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.62 E-value=2.6e+02 Score=19.95 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=25.6
Q ss_pred CCCceeHHHHHHHHHHcC--------CCCCCHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 048355 39 DKGVITFESLKKNSALLG--------LQDLSDDDLKCMLKEGDFDCDG-ALNQMEFCVL 88 (243)
Q Consensus 39 ~~G~i~~~el~~~l~~~g--------~~~~~~~e~~~~~~~~d~~~~g-~i~~~ef~~~ 88 (243)
|+-.||.+||.+++..-. +..+..++++++.+.+.....+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 345566666666665321 0124556666666555543333 3666665543
No 336
>PHA03209 serine/threonine kinase US3; Provisional
Probab=20.56 E-value=1.2e+02 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=20.4
Q ss_pred HhcCCCccCccccCC---------CCCCcEEEEEEec
Q 048355 197 ATDNFSINNKLGEEH---------TSGEQEISVKRLS 224 (243)
Q Consensus 197 aT~~f~~~n~iG~G~---------l~~g~~vAVK~l~ 224 (243)
...+|.....||.|+ ...+..||+|...
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~ 100 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ 100 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence 345677778999998 3456789999753
No 337
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=20.54 E-value=1e+02 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=20.2
Q ss_pred CCcEEEEEEecccc-cccHHHHHHHHHHhc
Q 048355 214 GEQEISVKRLSKIS-EQGLKELKNEVILFS 242 (243)
Q Consensus 214 ~g~~vAVK~l~~~~-~~~~~~F~~Ev~~Lg 242 (243)
++..+|+|.+.... ....++|..|++++.
T Consensus 34 ~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~ 63 (288)
T cd05050 34 PFTMVAVKMLKEEASADMQADFQREAALMA 63 (288)
T ss_pred cceeEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 45789999996432 233467999998774
No 338
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.49 E-value=73 Score=22.92 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=3.1
Q ss_pred HHHhhcCC
Q 048355 162 IILDKTGN 169 (243)
Q Consensus 162 ~~~~~~~~ 169 (243)
+++++.+|
T Consensus 48 li~lcssR 55 (189)
T PF05568_consen 48 LIYLCSSR 55 (189)
T ss_pred HHHHHhhh
Confidence 33444333
No 339
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=20.37 E-value=2.6e+02 Score=18.21 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=29.3
Q ss_pred CceeHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048355 41 GVITFESLKKNSALLGLQDLSDDDLKCMLKEGDFDCDGALNQMEFCV 87 (243)
Q Consensus 41 G~i~~~el~~~l~~~g~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~ 87 (243)
-.|.-.+|++.|...- .-.+..|...+=..+|.-.|+.|+-=||-.
T Consensus 21 ~IVPW~~F~~~L~~~h-~~~~~~~~~aLk~TiDlT~n~~iS~FeFdv 66 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVH-PISSGLEAMALKSTIDLTCNDYISNFEFDV 66 (85)
T ss_dssp SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHH
T ss_pred eEeeHHHHHHHHHHhc-CCCchHHHHHHHHHHhcccCCccchhhhHH
Confidence 4578888888887763 223335556666667888888888766643
No 340
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=20.23 E-value=63 Score=26.47 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=20.4
Q ss_pred CCCcEEEEEEeccccc-ccHHHHHHHHHHhc
Q 048355 213 SGEQEISVKRLSKISE-QGLKELKNEVILFS 242 (243)
Q Consensus 213 ~~g~~vAVK~l~~~~~-~~~~~F~~Ev~~Lg 242 (243)
..+..||||++..... ...+.|.+|+++|.
T Consensus 35 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~ 65 (338)
T cd05102 35 SSCNTVAVKMLKEGATASEHKALMSELKILI 65 (338)
T ss_pred ccchhhheeccccccchHHHHHHHHHHHHHH
Confidence 3567899999964322 22356889998774
No 341
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.21 E-value=1.9e+02 Score=19.63 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHhc
Q 048355 59 DLSDDDLKCMLKEG 72 (243)
Q Consensus 59 ~~~~~e~~~~~~~~ 72 (243)
.+|++|.+++.++.
T Consensus 89 ~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 89 ELSPEELEALQAEI 102 (104)
T ss_pred hCCHHHHHHHHHHh
Confidence 46666666666544
No 342
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=20.01 E-value=2.9e+02 Score=20.29 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=30.8
Q ss_pred CceeHHHHHHHHHHcC----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcc
Q 048355 41 GVITFESLKKNSALLG----LQDLSDDDLKCMLKEGDFDCDGALNQMEFCVLMFRLSPE 95 (243)
Q Consensus 41 G~i~~~el~~~l~~~g----~~~~~~~e~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 95 (243)
|.++.+.+++++.+-| -.++|++.+.+- -|.++.+|++..+....+.
T Consensus 56 ge~~~~tv~~Li~kRG~~~g~~~ltd~~i~e~--------~g~~~iedl~~~i~~~~~~ 106 (154)
T PRK06049 56 GEIDADTLAELLRKRGRLEGNKKLTDEYVKEN--------TGYDSIEELAEALVEGEIK 106 (154)
T ss_pred eeCchHHHHHHHHHhCcccCCCCCCHHHHHHh--------cCCccHHHHHHHHHhCCCC
Confidence 5666777777766543 035666655441 2678899999888876654
Done!