Query 048356
Match_columns 82
No_of_seqs 62 out of 64
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3139 N-acetyltransferase [G 97.8 8.2E-05 1.8E-09 54.2 6.8 73 8-82 14-91 (165)
2 TIGR01575 rimI ribosomal-prote 97.5 0.00081 1.8E-08 41.8 6.8 48 20-69 1-49 (131)
3 COG0456 RimI Acetyltransferase 97.3 0.00085 1.8E-08 44.4 5.7 65 18-82 19-98 (177)
4 PRK10146 aminoalkylphosphonic 97.1 0.0041 8.8E-08 39.9 7.2 54 18-71 11-67 (144)
5 TIGR03448 mycothiol_MshD mycot 96.7 0.0096 2.1E-07 43.1 7.1 65 17-81 7-76 (292)
6 PHA00673 acetyltransferase dom 96.5 0.012 2.5E-07 42.0 6.6 55 18-74 14-78 (154)
7 TIGR03827 GNAT_ablB putative b 96.5 0.025 5.3E-07 41.6 8.5 64 18-81 123-189 (266)
8 PF13527 Acetyltransf_9: Acety 96.5 0.014 3.1E-07 36.9 6.0 51 18-69 7-59 (127)
9 KOG3235 Subunit of the major N 96.2 0.0094 2E-07 44.3 4.7 63 18-82 9-78 (193)
10 PF13673 Acetyltransf_10: Acet 96.2 0.019 4.1E-07 35.5 5.4 50 20-69 1-62 (117)
11 PRK07757 acetyltransferase; Pr 96.1 0.034 7.3E-07 36.4 6.4 62 18-80 9-70 (152)
12 TIGR01686 FkbH FkbH-like domai 95.6 0.075 1.6E-06 40.2 7.5 62 18-81 194-263 (320)
13 PRK12308 bifunctional arginino 95.4 0.053 1.1E-06 44.9 6.5 63 18-81 471-533 (614)
14 PLN02825 amino-acid N-acetyltr 95.3 0.059 1.3E-06 44.7 6.3 64 18-82 375-439 (515)
15 PRK07922 N-acetylglutamate syn 95.2 0.14 3.1E-06 35.3 7.3 69 9-81 7-76 (169)
16 TIGR02406 ectoine_EctA L-2,4-d 94.8 0.12 2.5E-06 35.1 5.9 51 18-69 6-58 (157)
17 PRK01346 hypothetical protein; 94.8 0.18 3.9E-06 38.8 7.5 50 18-69 14-65 (411)
18 PRK09491 rimI ribosomal-protei 94.4 0.41 9E-06 31.0 7.4 48 18-69 9-58 (146)
19 PRK13688 hypothetical protein; 93.8 0.3 6.5E-06 34.0 6.2 40 18-70 25-64 (156)
20 PRK05279 N-acetylglutamate syn 93.6 0.27 5.8E-06 38.8 6.3 63 18-82 302-366 (441)
21 TIGR03103 trio_acet_GNAT GNAT- 93.4 0.37 8.1E-06 39.7 7.0 50 18-69 91-143 (547)
22 PRK10140 putative acetyltransf 92.9 0.99 2.1E-05 29.1 7.2 52 18-69 11-69 (162)
23 TIGR01890 N-Ac-Glu-synth amino 92.8 0.5 1.1E-05 37.3 6.7 62 18-81 290-353 (429)
24 COG3153 Predicted acetyltransf 92.6 0.31 6.7E-06 35.3 4.9 49 18-69 11-64 (171)
25 PTZ00330 acetyltransferase; Pr 92.4 0.87 1.9E-05 29.1 6.5 51 18-69 14-70 (147)
26 PRK03624 putative acetyltransf 92.2 1.3 2.8E-05 27.4 6.8 51 18-69 10-63 (140)
27 PF13508 Acetyltransf_7: Acety 90.3 0.8 1.7E-05 27.0 4.3 31 50-81 2-32 (79)
28 PF13523 Acetyltransf_8: Acety 89.5 2.3 4.9E-05 27.7 6.4 53 18-71 7-68 (152)
29 TIGR02382 wecD_rffC TDP-D-fuco 87.0 3.6 7.7E-05 28.4 6.4 62 18-79 51-127 (191)
30 PRK09831 putative acyltransfer 86.9 1.1 2.3E-05 29.5 3.6 51 18-69 8-71 (147)
31 PF09924 DUF2156: Uncharacteri 85.8 1.3 2.8E-05 32.9 3.9 55 18-72 143-202 (299)
32 PRK10975 TDP-fucosamine acetyl 85.3 2.9 6.4E-05 28.7 5.3 62 18-79 54-130 (194)
33 PF13480 Acetyltransf_6: Acety 85.2 6.9 0.00015 24.4 6.7 54 17-70 27-90 (142)
34 PRK10514 putative acetyltransf 85.2 3.3 7.1E-05 26.5 5.2 52 18-69 9-68 (145)
35 TIGR03448 mycothiol_MshD mycot 85.1 3.9 8.5E-05 29.5 6.0 50 20-69 160-218 (292)
36 PF13420 Acetyltransf_4: Acety 85.0 2.7 5.9E-05 27.1 4.7 22 49-70 48-70 (155)
37 PRK10314 putative acyltransfer 84.9 4 8.7E-05 27.7 5.7 53 18-70 14-67 (153)
38 PF13530 SCP2_2: Sterol carrie 83.9 1.3 2.9E-05 31.7 3.1 32 49-80 23-58 (218)
39 PHA01807 hypothetical protein 80.5 11 0.00023 26.3 6.6 21 49-69 51-71 (153)
40 KOG3138 Predicted N-acetyltran 80.1 1.3 2.8E-05 32.7 1.9 37 8-49 17-53 (187)
41 TIGR03585 PseH pseudaminic aci 79.3 6.6 0.00014 25.2 4.9 51 18-69 8-69 (156)
42 PF04339 DUF482: Protein of un 78.0 11 0.00023 30.3 6.7 63 6-69 201-269 (370)
43 PRK10562 putative acetyltransf 77.3 16 0.00035 23.6 6.4 50 18-69 7-66 (145)
44 KOG3234 Acetyltransferase, (GN 76.0 3.1 6.7E-05 30.7 2.9 47 20-68 11-59 (173)
45 TIGR01947 rnfG electron transp 71.7 11 0.00024 26.9 4.9 27 52-78 71-97 (186)
46 PF00765 Autoind_synth: Autoin 68.1 18 0.00038 26.0 5.3 52 18-69 7-63 (182)
47 PRK15130 spermidine N1-acetylt 67.4 32 0.00069 23.0 6.2 20 50-69 56-75 (186)
48 KOG4116 Ubiquinol cytochrome c 64.6 11 0.00024 25.3 3.3 43 28-72 30-72 (90)
49 COG1246 ArgA N-acetylglutamate 64.2 16 0.00035 26.3 4.4 64 18-82 8-72 (153)
50 cd04595 CBS_pair_DHH_polyA_Pol 61.6 21 0.00046 21.2 4.1 45 21-67 58-103 (110)
51 cd04619 CBS_pair_6 The CBS dom 61.5 15 0.00032 22.4 3.4 46 21-67 61-107 (114)
52 cd04301 NAT_SF N-Acyltransfera 61.3 20 0.00044 18.1 3.5 16 55-70 3-18 (65)
53 PLN02706 glucosamine 6-phospha 60.5 42 0.00092 21.5 7.4 44 24-68 21-72 (150)
54 KOG2488 Acetyltransferase (GNA 60.4 15 0.00031 27.9 3.7 52 18-70 53-112 (202)
55 PF15210 SFTA2: Surfactant-ass 60.2 5.2 0.00011 24.9 1.1 20 29-48 12-31 (59)
56 cd04638 CBS_pair_25 The CBS do 59.5 30 0.00064 20.5 4.4 46 21-67 54-99 (106)
57 COG3916 LasI N-acyl-L-homoseri 59.5 11 0.00024 28.5 3.0 53 17-69 13-71 (209)
58 PF12568 DUF3749: Acetyltransf 57.2 57 0.0012 22.9 6.1 65 6-81 3-67 (128)
59 cd04583 CBS_pair_ABC_OpuCA_ass 56.0 20 0.00042 21.1 3.2 46 21-67 56-102 (109)
60 PHA02087 hypothetical protein 55.0 5.3 0.00011 26.1 0.5 43 29-76 14-57 (83)
61 cd04589 CBS_pair_CAP-ED_DUF294 53.5 36 0.00078 20.2 4.1 26 42-67 79-104 (111)
62 cd04630 CBS_pair_17 The CBS do 53.3 30 0.00065 20.8 3.8 46 21-67 62-107 (114)
63 cd04800 CBS_pair_CAP-ED_DUF294 52.7 30 0.00066 20.5 3.7 46 21-67 59-104 (111)
64 cd04596 CBS_pair_DRTGG_assoc T 51.9 27 0.00059 20.8 3.4 47 20-67 54-101 (108)
65 KOG3216 Diamine acetyltransfer 51.9 55 0.0012 24.1 5.5 66 4-71 3-75 (163)
66 cd04625 CBS_pair_12 The CBS do 51.2 36 0.00079 20.2 3.9 46 21-67 60-105 (112)
67 cd04635 CBS_pair_22 The CBS do 49.1 33 0.00072 20.7 3.5 46 21-67 69-115 (122)
68 cd04622 CBS_pair_9 The CBS dom 49.0 30 0.00064 20.5 3.2 46 21-67 60-106 (113)
69 cd04604 CBS_pair_KpsF_GutQ_ass 48.7 32 0.0007 20.3 3.4 46 21-67 61-107 (114)
70 cd04610 CBS_pair_ParBc_assoc T 48.7 24 0.00052 20.7 2.8 46 21-67 54-100 (107)
71 cd04594 CBS_pair_EriC_assoc_ar 48.5 49 0.0011 19.7 4.2 46 21-67 52-97 (104)
72 PF00571 CBS: CBS domain CBS d 48.3 12 0.00025 20.4 1.2 26 42-67 21-47 (57)
73 cd04600 CBS_pair_HPP_assoc Thi 48.2 30 0.00064 21.0 3.2 46 21-67 71-117 (124)
74 cd04584 CBS_pair_ACT_assoc Thi 47.8 50 0.0011 19.8 4.1 46 21-67 69-114 (121)
75 cd04587 CBS_pair_CAP-ED_DUF294 47.5 20 0.00042 21.3 2.2 46 21-67 60-106 (113)
76 cd04585 CBS_pair_ACT_assoc2 Th 47.4 26 0.00056 20.9 2.8 47 20-67 68-115 (122)
77 cd04803 CBS_pair_15 The CBS do 47.3 36 0.00077 20.5 3.4 47 20-67 68-115 (122)
78 cd02205 CBS_pair The CBS domai 46.3 48 0.001 18.8 3.8 46 22-68 61-107 (113)
79 cd04613 CBS_pair_SpoIVFB_EriC_ 46.0 42 0.00092 19.7 3.6 47 20-67 59-107 (114)
80 cd04599 CBS_pair_GGDEF_assoc2 45.4 46 0.001 19.4 3.7 46 21-67 53-98 (105)
81 TIGR03019 pepcterm_femAB FemAB 44.7 58 0.0012 24.4 4.8 49 18-69 160-214 (330)
82 PRK01908 electron transport co 43.8 1.1E+02 0.0023 22.4 6.0 28 51-78 73-101 (205)
83 smart00116 CBS Domain in cysta 43.8 39 0.00085 16.2 2.8 26 42-67 14-40 (49)
84 cd04615 CBS_pair_2 The CBS dom 42.7 44 0.00096 19.8 3.3 46 21-67 60-106 (113)
85 cd04802 CBS_pair_3 The CBS dom 42.0 51 0.0011 19.5 3.5 46 21-67 60-105 (112)
86 cd04637 CBS_pair_24 The CBS do 42.0 50 0.0011 20.0 3.5 46 21-67 69-115 (122)
87 cd04611 CBS_pair_PAS_GGDEF_DUF 41.3 41 0.00088 19.8 3.0 47 21-68 58-105 (111)
88 cd04634 CBS_pair_21 The CBS do 41.3 64 0.0014 20.6 4.1 46 21-67 91-136 (143)
89 cd04607 CBS_pair_NTP_transfera 41.2 45 0.00097 19.9 3.2 46 21-67 60-106 (113)
90 COG1247 Sortase and related ac 41.1 39 0.00084 24.4 3.3 52 18-69 9-71 (169)
91 cd04626 CBS_pair_13 The CBS do 40.2 80 0.0017 18.7 4.3 27 42-68 79-105 (111)
92 cd04588 CBS_pair_CAP-ED_DUF294 39.7 54 0.0012 19.3 3.4 46 21-67 57-103 (110)
93 cd04612 CBS_pair_SpoIVFB_EriC_ 39.0 54 0.0012 19.2 3.2 44 23-67 60-104 (111)
94 cd04597 CBS_pair_DRTGG_assoc2 38.4 52 0.0011 20.5 3.3 46 21-67 60-106 (113)
95 cd04586 CBS_pair_BON_assoc Thi 37.5 57 0.0012 20.3 3.3 46 20-67 82-128 (135)
96 smart00021 DAX Domain present 37.4 23 0.0005 23.2 1.5 37 29-67 34-80 (83)
97 cd04591 CBS_pair_EriC_assoc_eu 35.2 56 0.0012 19.8 3.0 17 51-67 26-45 (105)
98 cd04641 CBS_pair_28 The CBS do 34.8 69 0.0015 19.4 3.4 36 31-67 5-41 (120)
99 cd04623 CBS_pair_10 The CBS do 34.6 77 0.0017 18.5 3.5 36 31-67 71-106 (113)
100 cd04602 CBS_pair_IMPDH_2 This 33.6 48 0.001 20.0 2.5 46 21-67 59-107 (114)
101 cd04606 CBS_pair_Mg_transporte 33.6 67 0.0015 19.1 3.1 46 21-67 55-101 (109)
102 cd04639 CBS_pair_26 The CBS do 33.1 78 0.0017 18.6 3.3 46 21-67 58-104 (111)
103 cd04633 CBS_pair_20 The CBS do 33.1 70 0.0015 19.2 3.1 46 21-67 69-114 (121)
104 cd04593 CBS_pair_EriC_assoc_ba 32.2 92 0.002 18.6 3.6 46 21-67 60-108 (115)
105 PRK13834 putative autoinducer 29.8 2E+02 0.0043 20.9 5.5 52 18-69 15-72 (207)
106 PF02209 VHP: Villin headpiece 29.5 24 0.00052 19.7 0.5 30 18-50 4-33 (36)
107 TIGR01380 glut_syn glutathione 29.0 1.2E+02 0.0026 23.0 4.4 21 50-72 207-227 (312)
108 PHA02770 hypothetical protein; 28.9 66 0.0014 20.8 2.6 18 50-67 30-47 (81)
109 PF06432 GPI2: Phosphatidylino 28.7 31 0.00066 26.3 1.1 20 28-49 7-27 (282)
110 cd04621 CBS_pair_8 The CBS dom 28.4 1.1E+02 0.0024 19.5 3.7 47 20-67 82-128 (135)
111 KOG0844 Transcription factor E 27.9 27 0.00059 28.6 0.8 16 21-38 190-205 (408)
112 cd04629 CBS_pair_16 The CBS do 27.9 1E+02 0.0022 18.2 3.2 47 21-68 62-108 (114)
113 PRK10151 ribosomal-protein-L7/ 27.5 1.9E+02 0.0041 19.1 6.4 17 53-69 69-85 (179)
114 cd04620 CBS_pair_7 The CBS dom 26.9 1.1E+02 0.0025 18.1 3.3 24 44-67 17-41 (115)
115 PRK14127 cell division protein 26.9 57 0.0012 22.1 2.1 20 16-35 86-105 (109)
116 cd04618 CBS_pair_5 The CBS dom 26.6 1.4E+02 0.0031 18.0 3.8 35 32-67 6-42 (98)
117 cd04627 CBS_pair_14 The CBS do 25.2 1.7E+02 0.0036 17.8 3.9 24 44-67 17-42 (123)
118 PF02122 Peptidase_S39: Peptid 25.2 28 0.00061 25.8 0.4 11 59-69 25-35 (203)
119 PF13988 DUF4225: Protein of u 24.8 55 0.0012 23.7 1.8 22 47-68 18-43 (168)
120 PF02824 TGS: TGS domain; Int 24.7 68 0.0015 18.8 1.9 15 50-64 31-45 (60)
121 cd04801 CBS_pair_M50_like This 24.6 1.4E+02 0.0031 17.7 3.5 17 51-67 26-42 (114)
122 cd04603 CBS_pair_KefB_assoc Th 24.6 1.4E+02 0.003 17.9 3.4 26 42-67 15-41 (111)
123 cd07561 Peptidase_S41_CPP_like 23.7 1.2E+02 0.0027 22.6 3.6 31 39-69 39-72 (256)
124 cd04598 CBS_pair_GGDEF_assoc T 23.7 1.5E+02 0.0033 17.6 3.4 46 21-67 63-112 (119)
125 cd04605 CBS_pair_MET2_assoc Th 23.2 1.3E+02 0.0028 17.6 3.0 24 44-67 79-103 (110)
126 cd04640 CBS_pair_27 The CBS do 23.2 1.5E+02 0.0033 18.2 3.5 26 42-67 15-41 (126)
127 cd04631 CBS_pair_18 The CBS do 23.1 1.7E+02 0.0037 17.5 3.7 46 21-67 72-118 (125)
128 PF04877 Hairpins: HrpZ; Inte 22.8 84 0.0018 25.2 2.7 28 18-47 167-194 (308)
129 PF15650 Tox-REase-9: Restrict 22.6 51 0.0011 22.0 1.2 15 5-19 47-61 (89)
130 cd00218 GlcAT-I Beta1,3-glucur 22.1 1.6E+02 0.0034 22.4 3.9 31 37-67 107-150 (223)
131 KOG1394 3-oxoacyl-(acyl-carrie 21.9 24 0.00051 29.5 -0.6 31 42-80 263-295 (440)
132 cd04617 CBS_pair_4 The CBS dom 21.8 1.7E+02 0.0037 17.6 3.5 26 42-67 15-41 (118)
133 cd04609 CBS_pair_PALP_assoc2 T 21.8 1.8E+02 0.0038 16.8 3.9 45 21-67 59-103 (110)
134 PF14794 DUF4479: Domain of un 21.7 1.1E+02 0.0024 19.2 2.5 22 48-69 12-33 (73)
135 PRK05246 glutathione synthetas 21.4 1.2E+02 0.0026 22.9 3.1 20 50-71 208-227 (316)
136 COG3620 Predicted transcriptio 21.2 1.9E+02 0.0042 21.6 4.1 39 26-67 134-175 (187)
137 COG2388 Predicted acetyltransf 21.0 2.1E+02 0.0046 18.9 3.9 23 50-73 14-36 (99)
138 PF07299 FBP: Fibronectin-bind 20.9 2E+02 0.0044 21.5 4.3 24 48-72 122-145 (208)
139 PF02794 HlyC: RTX toxin acylt 20.6 2.1E+02 0.0045 19.7 4.0 22 48-70 33-54 (133)
No 1
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.82 E-value=8.2e-05 Score=54.20 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=55.9
Q ss_pred EEecCCCCcchHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeE--EEEEEEeccCCce---eeeeccC
Q 048356 8 TELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQV--VGYVMYAWPTSLS---ASITKLA 82 (82)
Q Consensus 8 ~~l~~~~~~a~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkV--vGYvm~~~~t~~~---~~i~klA 82 (82)
..+++....+...+..|+++..+.|+++ |+..-..-+..+...|-++..|+++ ||+++|.|++..+ +.|.+||
T Consensus 14 ~~i~~~~~~~~~~l~~im~Li~k~lsep--yS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLa 91 (165)
T KOG3139|consen 14 EVIRPSLYPAEEYLADIMRLIDKDLSEP--YSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLA 91 (165)
T ss_pred eeeeeecchHHHHHHHHHHHHhhhcCch--hHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEE
Confidence 4455565566778889999999999987 7655444445555557777777776 9999999999888 8888876
No 2
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=97.46 E-value=0.00081 Score=41.79 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=36.9
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHH-hhccCceEEEEEECCeEEEEEEEe
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEE-LKKKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~E-L~k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
|+++|.+|.++.||.+ |+...++. +...+..++++..+|++|||+.+.
T Consensus 1 d~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~ 49 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFP--WTEAQFAEELANYHLCYLLARIGGKVVGYAGVQ 49 (131)
T ss_pred CHHHHHHHHHhhCCCC--CCHHHHHHHhcCCCceEEEEecCCeEEEEEEEE
Confidence 5789999999999975 76664444 444456677777799999999965
No 3
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.30 E-value=0.00085 Score=44.39 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=47.8
Q ss_pred hHhHH--HHHHHhhhcCCCCcccchhHHHHhh-ccCceEEEEEEC---C----eEEEEEEEeccCCc-----eeeeeccC
Q 048356 18 TVVVD--EIVKMEKKIFPKHESLARSFDEELK-KKNSGLLYIHIH---G----QVVGYVMYAWPTSL-----SASITKLA 82 (82)
Q Consensus 18 ~~~l~--~I~~IErk~FP~nes~~~~f~~EL~-k~n~~fl~a~~~---g----kVvGYvm~~~~t~~-----~~~i~klA 82 (82)
.+|+. .++.+|...|..+..|+..++.... ..+..++++..+ + +++||+++.-..+. .+||+.||
T Consensus 19 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~ia 98 (177)
T COG0456 19 NKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLA 98 (177)
T ss_pred hcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCccEEEEEE
Confidence 45677 9999999999854558888776665 447777777763 3 69999998534443 67887765
No 4
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=97.10 E-value=0.0041 Score=39.94 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=35.9
Q ss_pred hHhHHHHHHHhhhcCCCC---cccchhHHHHhhccCceEEEEEECCeEEEEEEEecc
Q 048356 18 TVVVDEIVKMEKKIFPKH---ESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYAWP 71 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~n---es~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~~~ 71 (82)
.+|+++|.++..+..+.. +.+...|.+.+.+++..+++++.+|++|||+.+...
T Consensus 11 ~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~ 67 (144)
T PRK10146 11 QYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQ 67 (144)
T ss_pred HhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEec
Confidence 678888888877766543 111122334444556677788889999999997643
No 5
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.68 E-value=0.0096 Score=43.12 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=43.6
Q ss_pred chHhHHHHHHHhhhcCCC--CcccchhHHHHhhcc---CceEEEEEECCeEEEEEEEeccCCceeeeecc
Q 048356 17 WTVVVDEIVKMEKKIFPK--HESLARSFDEELKKK---NSGLLYIHIHGQVVGYVMYAWPTSLSASITKL 81 (82)
Q Consensus 17 a~~~l~~I~~IErk~FP~--nes~~~~f~~EL~k~---n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~kl 81 (82)
..+|+++|.+|...++.. .+.|+..+..++..+ +...+++..+|++|||+.+....+..++|..|
T Consensus 7 ~~~d~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l 76 (292)
T TIGR03448 7 DADLRRDVRELLAAATAVDGVAPVSEQVLRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGTDPAMAEL 76 (292)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHhhccccCCCCceEEEEEECCEEEEEEEEEcCCCCcceEEEE
Confidence 366788888888866543 235787887777422 45577788899999999876443444555544
No 6
>PHA00673 acetyltransferase domain containing protein
Probab=96.55 E-value=0.012 Score=42.01 Aligned_cols=55 Identities=5% Similarity=0.024 Sum_probs=39.1
Q ss_pred hHhHHHHHHHhhh---------cCCCCcccchhHHHHhh-ccCceEEEEEECCeEEEEEEEeccCCc
Q 048356 18 TVVVDEIVKMEKK---------IFPKHESLARSFDEELK-KKNSGLLYIHIHGQVVGYVMYAWPTSL 74 (82)
Q Consensus 18 ~~~l~~I~~IErk---------~FP~nes~~~~f~~EL~-k~n~~fl~a~~~gkVvGYvm~~~~t~~ 74 (82)
.+|+++|+.|=.. .|+. +.|.+. ++.+. .++..+++++.+|+||||+++....++
T Consensus 14 ~~D~paI~~LLadd~l~~~r~d~~~~-~~y~~a-f~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l 78 (154)
T PHA00673 14 LADAPTFASLCAEYAHESANADLAGR-APDHHA-YAGMEAAGVAHFLGVFRGEELVGFACLLVTPVP 78 (154)
T ss_pred HhhHHHHHHHHHhccccccccccccc-chhHHH-HHHHHhCCCcEEEEEEECCEEEEEEEEEEecCC
Confidence 6789999988433 2322 335444 46664 558889999999999999998766654
No 7
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.55 E-value=0.025 Score=41.63 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=43.4
Q ss_pred hHhHHHHHHHhhhcCCCC-ccc-chhHHHHhhccCceEEEEEECCeEEEEEEEe-ccCCceeeeecc
Q 048356 18 TVVVDEIVKMEKKIFPKH-ESL-ARSFDEELKKKNSGLLYIHIHGQVVGYVMYA-WPTSLSASITKL 81 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~n-es~-~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~-~~t~~~~~i~kl 81 (82)
.+|+++|.+|-+.+|+.. ..+ ...+..+..+++..+++++.+|++||++... ...+.+++|+.+
T Consensus 123 ~~D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i 189 (266)
T TIGR03827 123 EDDADAMAALYRKVFPTYPFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDF 189 (266)
T ss_pred HHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEE
Confidence 678999999999998531 111 1234445545667788888899999999863 234556777655
No 8
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=96.47 E-value=0.014 Score=36.86 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=36.1
Q ss_pred hHhHHHHHHHhhhcCCCCcccc-hh-HHHHhhccCceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLA-RS-FDEELKKKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~-~~-f~~EL~k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|.++|.+|-+++|+..++.. .. ++..+.+ +...++++.+|+|||.+++.
T Consensus 7 ~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~ 59 (127)
T PF13527_consen 7 ESDFEQIIELFNEAFGDSESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLI 59 (127)
T ss_dssp GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEE
Confidence 4679999999999999764443 11 2233333 45688888899999998864
No 9
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=96.21 E-value=0.0094 Score=44.31 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=45.4
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHh-hccCceEEEEE-ECCeEEEEEEEeccC----C-ceeeeeccC
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEEL-KKKNSGLLYIH-IHGQVVGYVMYAWPT----S-LSASITKLA 82 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL-~k~n~~fl~a~-~~gkVvGYvm~~~~t----~-~~~~i~klA 82 (82)
++||-..-..+..++|+| |-=.++--+ ..-|..-+||+ .+|+||||+...--- . ...|||-||
T Consensus 9 ~~DL~~mQ~~Nl~~lpEN--yqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSla 78 (193)
T KOG3235|consen 9 PDDLLEMQHCNLLNLPEN--YQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLA 78 (193)
T ss_pred HHHHHHhhhcccccCcHH--HhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEee
Confidence 678888899999999988 765655444 44477777787 589999999876322 1 245666654
No 10
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=96.21 E-value=0.019 Score=35.47 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=32.7
Q ss_pred hHHHHHHHhhhcCCCCcc-----------cchhHHHHhhcc-CceEEEEEECCeEEEEEEEe
Q 048356 20 VVDEIVKMEKKIFPKHES-----------LARSFDEELKKK-NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes-----------~~~~f~~EL~k~-n~~fl~a~~~gkVvGYvm~~ 69 (82)
|+++|.+|=++++..+.. ++.....+..+. +..+++++.+|++|||+.+.
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 567777777776643210 223333444444 46899999999999999975
No 11
>PRK07757 acetyltransferase; Provisional
Probab=96.08 E-value=0.034 Score=36.37 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=37.2
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEEeccCCceeeeec
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYAWPTSLSASITK 80 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~k 80 (82)
.+|++++.++.....+....++. ..+++...-..++++..+|+++||+.........++|..
T Consensus 9 ~~D~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~~~~~~~i~~ 70 (152)
T PRK07757 9 LSDVKAIHALINVYAKKGLMLPR-SLDELYENIRDFYVAEEEGEIVGCCALHILWEDLAEIRS 70 (152)
T ss_pred cccHHHHHHHHHHHHhcCCccCC-CHHHHHhccCcEEEEEECCEEEEEEEEEeccCCceEEEE
Confidence 55778888887776654322222 234444443446777789999999987643333455544
No 12
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.64 E-value=0.075 Score=40.22 Aligned_cols=62 Identities=11% Similarity=0.196 Sum_probs=42.7
Q ss_pred hHhHHHHHHHhhhc--CCC-CcccchhHHHHhhccCceEEEEEE-----CCeEEEEEEEeccCCceeeeecc
Q 048356 18 TVVVDEIVKMEKKI--FPK-HESLARSFDEELKKKNSGLLYIHI-----HGQVVGYVMYAWPTSLSASITKL 81 (82)
Q Consensus 18 ~~~l~~I~~IErk~--FP~-nes~~~~f~~EL~k~n~~fl~a~~-----~gkVvGYvm~~~~t~~~~~i~kl 81 (82)
..|++.|.+|.+++ |+. ...|+...+.++...+ .++++.. ++.+|||+++. ..+..++|..+
T Consensus 194 ~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-~~~~~~~~d~~gd~givG~~~~~-~~~~~~~I~~l 263 (320)
T TIGR01686 194 EQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-EIVTVSMSDRFGDSGIIGIFVFE-KKEGNLFIDDL 263 (320)
T ss_pred hhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-CEEEEEEEecCCCCceEEEEEEE-ecCCcEEEEEE
Confidence 67899999999999 753 2347767555555444 4555543 56799999976 55666677665
No 13
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=95.41 E-value=0.053 Score=44.91 Aligned_cols=63 Identities=27% Similarity=0.200 Sum_probs=41.4
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEEeccCCceeeeecc
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYAWPTSLSASITKL 81 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~kl 81 (82)
.+|+++|.+|.+..+...+.++.. .+++......+++++.+|++|||+++....+..++|..|
T Consensus 471 ~~D~~~I~~L~~~~~~~~~~~~~~-~~~l~~~~~~~~Va~~~g~IVG~~~l~~~~~~~~~I~~i 533 (614)
T PRK12308 471 LTDIDAIEGMVAYWAGLGENLPRS-RNELVRDIGSFAVAEHHGEVTGCASLYIYDSGLAEIRSL 533 (614)
T ss_pred HHHHHHHHHHHHHHHhhhcccccC-HHHHhcccCcEEEEEECCEEEEEEEEEEcCCCeEEEEEE
Confidence 567888888887765432234333 244555545688888999999999976444445666654
No 14
>PLN02825 amino-acid N-acetyltransferase
Probab=95.27 E-value=0.059 Score=44.66 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=41.1
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEE-eccCCceeeeeccC
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMY-AWPTSLSASITKLA 82 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~-~~~t~~~~~i~klA 82 (82)
.+|+++|..|.+......... ....+++...-..|++++.||+|+||+.+ .+.....++|..+|
T Consensus 375 ~eDi~~I~~Li~~lee~g~lv-~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~la 439 (515)
T PLN02825 375 VEDLAGIRQIIRPLEESGILV-RRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIA 439 (515)
T ss_pred HHHHHHHHHHHHHHHHcCCCc-CCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEE
Confidence 679999999998875332111 11234444343568999999999999864 34444566776543
No 15
>PRK07922 N-acetylglutamate synthase; Validated
Probab=95.23 E-value=0.14 Score=35.26 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=38.9
Q ss_pred EecCCCCcchHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEE-ECCeEEEEEEEeccCCceeeeecc
Q 048356 9 ELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIH-IHGQVVGYVMYAWPTSLSASITKL 81 (82)
Q Consensus 9 ~l~~~~~~a~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~-~~gkVvGYvm~~~~t~~~~~i~kl 81 (82)
++.+.. .+|.++|..|.+...... .+..+...........+++++ .+|+++||++..-.....++|..+
T Consensus 7 ~iR~a~---~~D~~~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~~~~~~~i~~l 76 (169)
T PRK07922 7 TVRRAR---TSDVPAIKRLVDPYAQGR-ILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVMWEDLAEIRTV 76 (169)
T ss_pred eeecCC---HhhHHHHHHHHHHHhhcC-ccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeecCCCceEEEEE
Confidence 444544 667888888877655322 121222222223334577888 899999998865323334555443
No 16
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=94.85 E-value=0.12 Score=35.06 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=31.2
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhcc-CceEEEEE-ECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKK-NSGLLYIH-IHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~-n~~fl~a~-~~gkVvGYvm~~ 69 (82)
.+|+++|.+|.+.+++..-.....+.. ..+. +...++++ .+|++|||+++.
T Consensus 6 ~~D~~~i~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~ivG~~~~~ 58 (157)
T TIGR02406 6 IEDGAGIWELVKDCPPLDLNSSYAYLL-LCTDFADTSIVAESEGGEIVGFVSGY 58 (157)
T ss_pred cccHHHHHHHHHhCCCCCcccceehhh-hhhhcCCcEEEEEcCCCeEEEEEEEE
Confidence 578999999999997532111111211 2222 44456666 478999998764
No 17
>PRK01346 hypothetical protein; Provisional
Probab=94.80 E-value=0.18 Score=38.76 Aligned_cols=50 Identities=12% Similarity=-0.094 Sum_probs=35.7
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhh--ccCceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELK--KKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~--k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|+++|.+|...+|+.. .+..+.++.. ..+...++++.+|++|||++..
T Consensus 14 ~~D~~~i~~L~~~~f~~~--~~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~ 65 (411)
T PRK01346 14 EEDWPAWFRAAATGFGDS--PSDEELEAWRALVEPDRTLGAFDGDEVVGTAGAF 65 (411)
T ss_pred HHHHHHHHHHHHHHcCCC--CChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEe
Confidence 578999999999999864 3333333332 2244567888899999999954
No 18
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=94.37 E-value=0.41 Score=31.03 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=29.2
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEE--EEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLL--YIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl--~a~~~gkVvGYvm~~ 69 (82)
.+|++++..++...+... |....+.+. ....++ .++.+|++|||++..
T Consensus 9 ~~D~~~l~~l~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~vG~~~~~ 58 (146)
T PRK09491 9 PADLPAAYHIEQRAHAFP--WSEKTFASN--QGERYLNLKLTVNGQMAAFAITQ 58 (146)
T ss_pred hhhhHHHHHHHHhcCCCC--CCHHHHHHH--HhcCceEEEEEECCeEEEEEEEE
Confidence 567888888877665432 544422222 222333 245689999999865
No 19
>PRK13688 hypothetical protein; Provisional
Probab=93.80 E-value=0.3 Score=34.05 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=30.7
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEEec
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYAW 70 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~~ 70 (82)
..+|.+|.+|++.+| ++ + ++..++++..+++++|++...+
T Consensus 25 ~~dl~~l~~l~~~~f-~~--~----------~~~~~~~~~~~~~~VG~~~l~~ 64 (156)
T PRK13688 25 NQELSMLEELQANII-EN--D----------SESPFYGIYYGDSLVARMSLYK 64 (156)
T ss_pred HHHHHHHHhhhhhEe-ec--C----------CCCCEEEEEECCEEEEEEEEEe
Confidence 458999999999999 33 3 2345777888999999987543
No 20
>PRK05279 N-acetylglutamate synthase; Validated
Probab=93.59 E-value=0.27 Score=38.80 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=36.5
Q ss_pred hHhHHHHHHHhhhcCCCCcccch-hHHHHhhccCceEEEEEECCeEEEEEEEe-ccCCceeeeeccC
Q 048356 18 TVVVDEIVKMEKKIFPKHESLAR-SFDEELKKKNSGLLYIHIHGQVVGYVMYA-WPTSLSASITKLA 82 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~-~f~~EL~k~n~~fl~a~~~gkVvGYvm~~-~~t~~~~~i~klA 82 (82)
.+|+++|.+|-+..-.. .|.. +..+.+.+....+++++.+|+++||+... +.....++|..++
T Consensus 302 ~~D~~~I~~L~~~~~~~--~~~~~~~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~ 366 (441)
T PRK05279 302 IDDVGGILELIRPLEEQ--GILVRRSREQLEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLA 366 (441)
T ss_pred HHHHHHHHHHHHHHHHc--CCccccCHHHHhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEE
Confidence 46788888765433211 1211 12233444445578888899999998543 4444567776553
No 21
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=93.38 E-value=0.37 Score=39.70 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=36.4
Q ss_pred hHhHHHHHHHhhhcCCCCcccchh-HHHHhhccCceEEEEEE--CCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARS-FDEELKKKNSGLLYIHI--HGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~-f~~EL~k~n~~fl~a~~--~gkVvGYvm~~ 69 (82)
.+|+++|.+|.++.+..+ ++.. +..++..++..+++|+. +|+||||+++.
T Consensus 91 ~~D~~~I~~L~~~~~~~p--~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~ 143 (547)
T TIGR03103 91 PADVDAINRLYAARGMVP--VRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGV 143 (547)
T ss_pred hhHHHHHHHHHHhcCCCC--CCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEE
Confidence 578999999999987543 4444 33444455677888875 69999999853
No 22
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=92.89 E-value=0.99 Score=29.10 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=30.7
Q ss_pred hHhHHHHHHHhhh--cCCC---Cc-ccchhHHHHhhcc-CceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKK--IFPK---HE-SLARSFDEELKKK-NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk--~FP~---ne-s~~~~f~~EL~k~-n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|+++|.++... +|.. .. .....+...+... +..++++..+|++|||+...
T Consensus 11 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~ 69 (162)
T PRK10140 11 TRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTID 69 (162)
T ss_pred hhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEe
Confidence 4567788887763 3321 01 1222344444443 44567777899999999875
No 23
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=92.79 E-value=0.5 Score=37.31 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=38.4
Q ss_pred hHhHHHHHHHhhhcCCCCcccchh-HHHHhhccCceEEEEEECCeEEEEEEEe-ccCCceeeeecc
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARS-FDEELKKKNSGLLYIHIHGQVVGYVMYA-WPTSLSASITKL 81 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~-f~~EL~k~n~~fl~a~~~gkVvGYvm~~-~~t~~~~~i~kl 81 (82)
.+|+++|.+|-+...++. |... ..+.+......|++++.+|+++||+.+. +...-.++|..+
T Consensus 290 ~~Dl~~I~~L~~~~~~~~--~~~~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l 353 (429)
T TIGR01890 290 IDDIGGIAALIRPLEEQG--ILVRRSREYLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACL 353 (429)
T ss_pred HHHHHHHHHHHHHHHHcC--CchhhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEE
Confidence 578999999865544332 3222 3334444455688888899999999765 222334666544
No 24
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=92.58 E-value=0.31 Score=35.34 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=35.2
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHH-HHhhcc----CceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFD-EELKKK----NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~-~EL~k~----n~~fl~a~~~gkVvGYvm~~ 69 (82)
..|.+.|-+|+++.|- +...... +.|++. .+.-+||+.+|+|||+++.+
T Consensus 11 ~~d~~~i~~~~~~aF~---~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s 64 (171)
T COG3153 11 PADIPAIEALTREAFG---PGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFS 64 (171)
T ss_pred hhhHHHHHHHHHHHhh---cchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEe
Confidence 5678999999999994 2333323 334322 56678888899999999976
No 25
>PTZ00330 acetyltransferase; Provisional
Probab=92.44 E-value=0.87 Score=29.09 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=29.4
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhh----cc--CceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELK----KK--NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~----k~--n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|+++|+++-+..... ..++....+++. .. ...++++..+|++|||+...
T Consensus 14 ~~D~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 70 (147)
T PTZ00330 14 EGDLGSVLELLSHLTSA-PALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLF 70 (147)
T ss_pred cccHHHHHHHHHHhcCC-CccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEE
Confidence 55677777776666532 223333323331 12 23455566689999999864
No 26
>PRK03624 putative acetyltransferase; Provisional
Probab=92.18 E-value=1.3 Score=27.41 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=30.1
Q ss_pred hHhHHHHHHHhhhcCCCCcccchh---HHHHhhccCceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARS---FDEELKKKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~---f~~EL~k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|++++.++-+..-. ...|.+. +...+..++..++++..+|++||+++..
T Consensus 10 ~~d~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~ 63 (140)
T PRK03624 10 QADFEAVIALWERCDL-TRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGG 63 (140)
T ss_pred cccHHHHHHHHHhcCC-CcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEee
Confidence 4567777777766521 1123222 2222223356677788899999999865
No 27
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=90.27 E-value=0.8 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=24.5
Q ss_pred CceEEEEEECCeEEEEEEEeccCCceeeeecc
Q 048356 50 NSGLLYIHIHGQVVGYVMYAWPTSLSASITKL 81 (82)
Q Consensus 50 n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~kl 81 (82)
.+.+++++.+|+++|++.+ |..+..+.|..+
T Consensus 2 ~~~~~~~~~~~~ivG~~~~-~~~~~~~~i~~~ 32 (79)
T PF13508_consen 2 KERFFVAEDDGEIVGFIRL-WPNEDFAYIGYL 32 (79)
T ss_dssp TEEEEEEEETTEEEEEEEE-EETTTEEEEEEE
T ss_pred ccEEEEEEECCEEEEEEEE-EEcCCEEEEEEE
Confidence 3568888999999999996 677777776554
No 28
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=89.45 E-value=2.3 Score=27.71 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=32.2
Q ss_pred hHhHHHHHHHhhhc----CCCCcccc----hhHHHHhh-ccCceEEEEEECCeEEEEEEEecc
Q 048356 18 TVVVDEIVKMEKKI----FPKHESLA----RSFDEELK-KKNSGLLYIHIHGQVVGYVMYAWP 71 (82)
Q Consensus 18 ~~~l~~I~~IErk~----FP~nes~~----~~f~~EL~-k~n~~fl~a~~~gkVvGYvm~~~~ 71 (82)
.+|++.|.++-.+- |= ...++ ..+.+.+. .+....++++.||+++||+...|+
T Consensus 7 ~~Dl~~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~ 68 (152)
T PF13523_consen 7 PDDLPLILQWLNQPHVREFW-DQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWP 68 (152)
T ss_dssp GGGHHHHHHHHTSHHHHCCH--CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEG
T ss_pred HHHHHHHHHHHHhHHHHHHc-cCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecc
Confidence 45677777765433 31 22233 22333332 346678888999999999998764
No 29
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=87.00 E-value=3.6 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=34.0
Q ss_pred hHhHHHHHHHhhhcCCCCc---ccch-----hHH----HHhh-cc--CceEEEEEECCeEEEEEEEeccCCceeeee
Q 048356 18 TVVVDEIVKMEKKIFPKHE---SLAR-----SFD----EELK-KK--NSGLLYIHIHGQVVGYVMYAWPTSLSASIT 79 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~ne---s~~~-----~f~----~EL~-k~--n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~ 79 (82)
.+|+++|+++..+.|+... .|.. .+. ++.. .. +..++++..+|+++||+...-.....++|.
T Consensus 51 ~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~~~~i~ 127 (191)
T TIGR02382 51 ETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDTDARIG 127 (191)
T ss_pred hhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCCceEEE
Confidence 6789999999998875310 1211 111 1221 12 223445556899999998752223334443
No 30
>PRK09831 putative acyltransferase; Provisional
Probab=86.94 E-value=1.1 Score=29.45 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=30.1
Q ss_pred hHhHHHHHHHhhhcCCCC--cccchhHH-----------HHhhccCceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKH--ESLARSFD-----------EELKKKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~n--es~~~~f~-----------~EL~k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|+++|.+|-..++.+. ..++.... ..... +..++++..+|+++||+.+.
T Consensus 8 ~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~iiG~~~~~ 71 (147)
T PRK09831 8 PGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVINAQPVGFITCI 71 (147)
T ss_pred hhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEECCEEEEEEEeh
Confidence 577888888866554221 11222111 11112 45688888899999998753
No 31
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=85.80 E-value=1.3 Score=32.87 Aligned_cols=55 Identities=11% Similarity=0.178 Sum_probs=34.4
Q ss_pred hHhHHHHHHHhhhcCCCCcc----cchhHHHHhhccCceEEEEEE-CCeEEEEEEEeccC
Q 048356 18 TVVVDEIVKMEKKIFPKHES----LARSFDEELKKKNSGLLYIHI-HGQVVGYVMYAWPT 72 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes----~~~~f~~EL~k~n~~fl~a~~-~gkVvGYvm~~~~t 72 (82)
.+++++|.++..+-.-+.+. +....++.....+...+++.. +|+++||+++....
T Consensus 143 ~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~ 202 (299)
T PF09924_consen 143 PELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLG 202 (299)
T ss_dssp GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEcc
Confidence 56677777777665533311 112222333344788889999 99999999988444
No 32
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=85.25 E-value=2.9 Score=28.74 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=33.8
Q ss_pred hHhHHHHHHHhhhcCCCCc---cc-ch----hHHHHhh-----cc-CceEEEEE-ECCeEEEEEEEeccCCceeeee
Q 048356 18 TVVVDEIVKMEKKIFPKHE---SL-AR----SFDEELK-----KK-NSGLLYIH-IHGQVVGYVMYAWPTSLSASIT 79 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~ne---s~-~~----~f~~EL~-----k~-n~~fl~a~-~~gkVvGYvm~~~~t~~~~~i~ 79 (82)
.+|+++|.+|-..+|+.+. .| +. .+.++.. .. +..++++. .+|++||++.+....+..++|.
T Consensus 54 ~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~ 130 (194)
T PRK10975 54 ETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDTDARIG 130 (194)
T ss_pred cccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCCceEEE
Confidence 4688888888888876421 11 11 2222221 11 22444554 4789999998764333334443
No 33
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=85.24 E-value=6.9 Score=24.35 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=33.3
Q ss_pred chHhHHHHHHHhhhcCCCC-----cccchhHHHHhhc----c-CceEEEEEECCeEEEEEEEec
Q 048356 17 WTVVVDEIVKMEKKIFPKH-----ESLARSFDEELKK----K-NSGLLYIHIHGQVVGYVMYAW 70 (82)
Q Consensus 17 a~~~l~~I~~IErk~FP~n-----es~~~~f~~EL~k----~-n~~fl~a~~~gkVvGYvm~~~ 70 (82)
..+++++++++-++..... ..++..|+++|.. + .-.++++..+|++||..++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~ 90 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFR 90 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEE
Confidence 3455666666554332221 2366678888853 2 445666677999999988663
No 34
>PRK10514 putative acetyltransferase; Provisional
Probab=85.17 E-value=3.3 Score=26.47 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=26.9
Q ss_pred hHhHHHHHHHhhhcCCCCc----ccch-hHHHHhhc--cCceEEEEE-ECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHE----SLAR-SFDEELKK--KNSGLLYIH-IHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~ne----s~~~-~f~~EL~k--~n~~fl~a~-~~gkVvGYvm~~ 69 (82)
.+|++++.+|-+..+.... .... .+...+.+ +...++++. .+|+++|+++..
T Consensus 9 ~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~ 68 (145)
T PRK10514 9 HEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLS 68 (145)
T ss_pred hhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEe
Confidence 5677788887776432111 1111 12222221 223344443 489999999864
No 35
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=85.07 E-value=3.9 Score=29.52 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=32.6
Q ss_pred hHHHHHHHhhhcCCCC---cccchhHHHHhh-c---cCceEEEEEE--CCeEEEEEEEe
Q 048356 20 VVDEIVKMEKKIFPKH---ESLARSFDEELK-K---KNSGLLYIHI--HGQVVGYVMYA 69 (82)
Q Consensus 20 ~l~~I~~IErk~FP~n---es~~~~f~~EL~-k---~n~~fl~a~~--~gkVvGYvm~~ 69 (82)
|..++.+++...|+.+ ..|....+.+.. . .+..++++.. +|++|||++..
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~ 218 (292)
T TIGR03448 160 DDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTK 218 (292)
T ss_pred chHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEE
Confidence 6678888999999753 235444333322 1 2556777877 69999998655
No 36
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=84.98 E-value=2.7 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=16.2
Q ss_pred cCceEEEEEE-CCeEEEEEEEec
Q 048356 49 KNSGLLYIHI-HGQVVGYVMYAW 70 (82)
Q Consensus 49 ~n~~fl~a~~-~gkVvGYvm~~~ 70 (82)
++..++++.. +|+++||+-+..
T Consensus 48 ~~~~~~~v~~~~g~iiG~~~~~~ 70 (155)
T PF13420_consen 48 SKQRLFLVAEEDGKIIGYVSLRD 70 (155)
T ss_dssp HTTEEEEEEECTTEEEEEEEEEE
T ss_pred CCCcEEEEEEcCCcEEEEEEEEe
Confidence 4555555555 999999998773
No 37
>PRK10314 putative acyltransferase; Provisional
Probab=84.85 E-value=4 Score=27.71 Aligned_cols=53 Identities=6% Similarity=0.025 Sum_probs=33.6
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhh-ccCceEEEEEECCeEEEEEEEec
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELK-KKNSGLLYIHIHGQVVGYVMYAW 70 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~-k~n~~fl~a~~~gkVvGYvm~~~ 70 (82)
...+.++++|=.++|=.--..+..-.++.. ...+..+++..+|++|||+-+..
T Consensus 14 ~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~ 67 (153)
T PRK10314 14 VSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILK 67 (153)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEec
Confidence 557889999999999322113211111211 23466777788999999998763
No 38
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=83.95 E-value=1.3 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=21.5
Q ss_pred cCceEEEEEECCeEEEEEEEeccC----Cceeeeec
Q 048356 49 KNSGLLYIHIHGQVVGYVMYAWPT----SLSASITK 80 (82)
Q Consensus 49 ~n~~fl~a~~~gkVvGYvm~~~~t----~~~~~i~k 80 (82)
.+...+|...+|++.||++|...- +....|..
T Consensus 23 ~~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~E 58 (218)
T PF13530_consen 23 DRGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRE 58 (218)
T ss_dssp GSEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEE
T ss_pred CceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEE
Confidence 355555566699999999999443 14555544
No 39
>PHA01807 hypothetical protein
Probab=80.51 E-value=11 Score=26.32 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=16.3
Q ss_pred cCceEEEEEECCeEEEEEEEe
Q 048356 49 KNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 49 ~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.....++++.+|++|||+.+.
T Consensus 51 ~~~~~lva~~dg~lvG~~~l~ 71 (153)
T PHA01807 51 NDRTELLVFRDGKLAGIAVLV 71 (153)
T ss_pred CCceEEEEEECCEEEEEEEEE
Confidence 344467788899999998865
No 40
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=80.05 E-value=1.3 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=29.3
Q ss_pred EEecCCCCcchHhHHHHHHHhhhcCCCCcccchhHHHHhhcc
Q 048356 8 TELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKK 49 (82)
Q Consensus 8 ~~l~~~~~~a~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~ 49 (82)
.+|..-. ..++.+.-+|++.+||.. |.+.|+++.++.
T Consensus 17 ~~l~~it---~~nl~~~~~l~~~~fP~~--y~~kfy~~~~~~ 53 (187)
T KOG3138|consen 17 IELRLIT---PNNLKQLKQLNEDIFPIS--YVDKFYPDVLSN 53 (187)
T ss_pred eeeccCC---cchHHHHHHHhccccCcc--hHHHHHHHHHhc
Confidence 3444444 678999999999999955 999999998755
No 41
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=79.30 E-value=6.6 Score=25.20 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=30.9
Q ss_pred hHhHHHHHHHhh------hcCCCCcccc----hhHHHHhhcc-CceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEK------KIFPKHESLA----RSFDEELKKK-NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IEr------k~FP~nes~~----~~f~~EL~k~-n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|+++|.++.. -.++.+ .++ ..+++++... +..++++..+|++|||+.+.
T Consensus 8 ~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~ 69 (156)
T TIGR03585 8 SEELELVLEWRNHPDVRANMYSDH-LIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFT 69 (156)
T ss_pred HHHHHHHHHhhCCHHHHhhccCcC-CCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEE
Confidence 567777777632 122221 122 2355666543 45677778899999999976
No 42
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=78.00 E-value=11 Score=30.30 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=44.2
Q ss_pred ceEEecCCCCcchHhHHHHHHHhhhcCCCC---cccchhHHHHhhcc---CceEEEEEECCeEEEEEEEe
Q 048356 6 TVTELQRNSTNWTVVVDEIVKMEKKIFPKH---ESLARSFDEELKKK---NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 6 ~~~~l~~~~~~a~~~l~~I~~IErk~FP~n---es~~~~f~~EL~k~---n~~fl~a~~~gkVvGYvm~~ 69 (82)
+|..|.... -..++++.+.++-+.++-+. .-++..||+++.+. +-.+++|..+|++||..++.
T Consensus 201 ~~~~l~G~~-i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l 269 (370)
T PF04339_consen 201 RIRTLTGDE-ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCL 269 (370)
T ss_pred EEEEEeCCC-CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEE
Confidence 455554333 34578899999999988765 22356689999643 44456667799999999976
No 43
>PRK10562 putative acetyltransferase; Provisional
Probab=77.27 E-value=16 Score=23.55 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=28.0
Q ss_pred hHhHHHHHHHhhhc--CCCCcccchh-HHHHh-------hccCceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKI--FPKHESLARS-FDEEL-------KKKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~--FP~nes~~~~-f~~EL-------~k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+|+++|.+|-... .+.. +.+. +..+. ..++..++++..+|++|||+...
T Consensus 7 ~~D~~~i~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~ 66 (145)
T PRK10562 7 PSDLPAILQLWLESTIWAHP--FIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVL 66 (145)
T ss_pred chhhHHHHHHHHHhccccCC--CCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEe
Confidence 46788888875443 3221 2211 11111 12344566777789999998754
No 44
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=75.97 E-value=3.1 Score=30.75 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=31.7
Q ss_pred hHHHHHHHhhhcCCCCcccchhHH-HHhhccCceEEEEEE-CCeEEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFD-EELKKKNSGLLYIHI-HGQVVGYVMY 68 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~-~EL~k~n~~fl~a~~-~gkVvGYvm~ 68 (82)
||...=.|+-..+- |.|+-+|. .-+.+-++.|++++. .|.+.||+|.
T Consensus 11 Dlf~fNninLDplt--Et~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimg 59 (173)
T KOG3234|consen 11 DLFKFNNINLDPLT--ETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMG 59 (173)
T ss_pred HHHhhccccccccc--cccceehhHHHHHhChHHhEeccCCCCceEEEEee
Confidence 44444444444443 45776755 445566999999987 5889999998
No 45
>TIGR01947 rnfG electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=71.72 E-value=11 Score=26.89 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=18.1
Q ss_pred eEEEEEECCeEEEEEEEeccCCceeee
Q 048356 52 GLLYIHIHGQVVGYVMYAWPTSLSASI 78 (82)
Q Consensus 52 ~fl~a~~~gkVvGYvm~~~~t~~~~~i 78 (82)
.+..+..+|+++||++-.-..|....|
T Consensus 71 ~v~~~~~~g~~~gyv~~~~~~Gy~G~I 97 (186)
T TIGR01947 71 PVYGAKKGGQVVAYVLEVSAPGYSGPI 97 (186)
T ss_pred EEEEEecCCeEEEEEEEccCCCCCCce
Confidence 445556689999999965444655444
No 46
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=68.13 E-value=18 Score=25.95 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=36.8
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhH-----HHHhhccCceEEEEEECCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSF-----DEELKKKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f-----~~EL~k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
.+.++++.++=+++|-+.-.|.-.- .++.-..++.++++..+|+|+|++=-.
T Consensus 7 ~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLl 63 (182)
T PF00765_consen 7 RRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLL 63 (182)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeec
Confidence 4678999999999997655564331 233334567888888999999997544
No 47
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=67.42 E-value=32 Score=23.03 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=14.5
Q ss_pred CceEEEEEECCeEEEEEEEe
Q 048356 50 NSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 50 n~~fl~a~~~gkVvGYvm~~ 69 (82)
+...+++..+|++||++.+.
T Consensus 56 ~~~~~~i~~~g~~iG~~~~~ 75 (186)
T PRK15130 56 SERRFVVECDGEKAGLVELV 75 (186)
T ss_pred cCcEEEEEECCEEEEEEEEE
Confidence 44455566799999999753
No 48
>KOG4116 consensus Ubiquinol cytochrome c reductase, subunit QCR8 [Energy production and conversion]
Probab=64.58 E-value=11 Score=25.28 Aligned_cols=43 Identities=23% Similarity=0.588 Sum_probs=30.5
Q ss_pred hhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEEeccC
Q 048356 28 EKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYAWPT 72 (82)
Q Consensus 28 Erk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~~~t 72 (82)
|.+.++- .|...+...+++--+.++|..+.--||+|.+|.|..
T Consensus 30 eQra~~g--~F~~~~~n~fRr~~~~~~y~~iP~~Iv~yliy~wg~ 72 (90)
T KOG4116|consen 30 EQRAYAG--FFDKAFPNMFRRFRSDQLYVVIPQFIVAYLIYDWGK 72 (90)
T ss_pred hhccccc--hhhhhhHHHHHHhhhccEEEEeccceEEEEEEecch
Confidence 4555652 366666667766566667777777899999999965
No 49
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=64.18 E-value=16 Score=26.28 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=37.7
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEEe-ccCCceeeeeccC
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYA-WPTSLSASITKLA 82 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~-~~t~~~~~i~klA 82 (82)
.+|+..|.++=+...- .+-+-.-..+.+...-.-|.+++.+|+|+|=+--. .+.+..+.+.-||
T Consensus 8 ~~Di~~I~~Li~~~~~-~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~la 72 (153)
T COG1246 8 ISDIPAILELIRPLEL-QGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLA 72 (153)
T ss_pred ccchHHHHHHHHHHhh-ccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEE
Confidence 3466666665554431 11111112233333334499999999999988755 3688888877665
No 50
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=61.63 E-value=21 Score=21.24 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=25.0
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCce-EEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSG-LLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~-fl~a~~~gkVvGYvm 67 (82)
+.++++-+--+++.+++... ..+.+.+.+.. +++.. +|+++|++-
T Consensus 58 ~~~~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~V~~-~~~~~Gvvt 103 (110)
T cd04595 58 VKDYMSTDVVTVPPDTPLSE-VQELMVEHDIGRVPVVE-DGRLVGIVT 103 (110)
T ss_pred HHHHhcCCCEEECCCCcHHH-HHHHHHHcCCCeeEEEe-CCEEEEEEE
Confidence 45555545555555544421 22344444444 44445 999999875
No 51
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=61.51 E-value=15 Score=22.39 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEE-EECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYI-HIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a-~~~gkVvGYvm 67 (82)
+.+++.-.--+++.+++..+ -.+.+.+.+...+.+ ..+|+++|++-
T Consensus 61 v~~~~~~~~~~v~~~~~l~~-a~~~m~~~~~~~lpVvd~~~~~~Gvi~ 107 (114)
T cd04619 61 VENVMTRAVVSCRPGDLLHD-VWQVMKQRGLKNIPVVDENARPLGVLN 107 (114)
T ss_pred HHHHhcCCCeeECCCCCHHH-HHHHHHHcCCCeEEEECCCCcEEEEEE
Confidence 55566555555555555532 334445555544444 44689999985
No 52
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=61.29 E-value=20 Score=18.06 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=12.2
Q ss_pred EEEECCeEEEEEEEec
Q 048356 55 YIHIHGQVVGYVMYAW 70 (82)
Q Consensus 55 ~a~~~gkVvGYvm~~~ 70 (82)
.+..+++++||+....
T Consensus 3 ~~~~~~~~ig~~~~~~ 18 (65)
T cd04301 3 VAEDDGEIVGFASLSP 18 (65)
T ss_pred EEecCCEEEEEEEEEe
Confidence 3456789999999764
No 53
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=60.47 E-value=42 Score=21.49 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=23.0
Q ss_pred HHHHhhhcCCCCcccchhHHHHh----hc-c-CceEEEEEE--CCeEEEEEEE
Q 048356 24 IVKMEKKIFPKHESLARSFDEEL----KK-K-NSGLLYIHI--HGQVVGYVMY 68 (82)
Q Consensus 24 I~~IErk~FP~nes~~~~f~~EL----~k-~-n~~fl~a~~--~gkVvGYvm~ 68 (82)
+..+.... +.++.++...+.+. .. . +..+++++. +|+|||++..
T Consensus 21 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 72 (150)
T PLN02706 21 FLELLQQL-TVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSV 72 (150)
T ss_pred HHHHHHhc-cCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEE
Confidence 55554443 33345654433222 22 2 233445555 6899999875
No 54
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=60.38 E-value=15 Score=27.86 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=35.2
Q ss_pred hHhHHHHHHHhhh----cCCCCcc--cchh-HHHHhhccCceEEEEEECC-eEEEEEEEec
Q 048356 18 TVVVDEIVKMEKK----IFPKHES--LARS-FDEELKKKNSGLLYIHIHG-QVVGYVMYAW 70 (82)
Q Consensus 18 ~~~l~~I~~IErk----~FP~nes--~~~~-f~~EL~k~n~~fl~a~~~g-kVvGYvm~~~ 70 (82)
.++|+-.++|=++ -. +..+ |.+. =..||+.....||+|--++ ++|||.|+++
T Consensus 53 ~~~ldw~f~L~k~nm~~~Y-~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf 112 (202)
T KOG2488|consen 53 YEDLDWCFSLFKKNMGAMY-RQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRF 112 (202)
T ss_pred HHHHHHHHHHHHhhhHHHh-hhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEE
Confidence 3667777777666 33 2344 4333 3478877767788887765 9999999985
No 55
>PF15210 SFTA2: Surfactant-associated protein 2
Probab=60.21 E-value=5.2 Score=24.87 Aligned_cols=20 Identities=40% Similarity=0.378 Sum_probs=16.2
Q ss_pred hhcCCCCcccchhHHHHhhc
Q 048356 29 KKIFPKHESLARSFDEELKK 48 (82)
Q Consensus 29 rk~FP~nes~~~~f~~EL~k 48 (82)
+++|+.|.||..+|.+-|.|
T Consensus 12 k~sfl~n~S~~Ssfle~LeK 31 (59)
T PF15210_consen 12 KDSFLANSSYDSSFLEFLEK 31 (59)
T ss_pred hhhhccccchhhHHHHHHHH
Confidence 57899999999998776643
No 56
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=59.53 E-value=30 Score=20.50 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=26.0
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-+--+++.+++. +....-+.+.+...+.+..+|+++|++-
T Consensus 54 ~~~~~~~~~~~v~~~~~l-~~~~~~~~~~~~~~~~Vvd~~~~~G~it 99 (106)
T cd04638 54 LALLMTRDPPTVSPDDDV-KEAAKLMVENNIRRVPVVDDGKLVGIVT 99 (106)
T ss_pred HHHHhcCCCceECCCCCH-HHHHHHHHHcCCCEEEEEECCEEEEEEE
Confidence 444554444445555444 2344445555555555555789999986
No 57
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.52 E-value=11 Score=28.54 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=38.4
Q ss_pred chHhHHHHHHHhhhcCCCCcccchh-----HHHHhhccCceEEEE-EECCeEEEEEEEe
Q 048356 17 WTVVVDEIVKMEKKIFPKHESLARS-----FDEELKKKNSGLLYI-HIHGQVVGYVMYA 69 (82)
Q Consensus 17 a~~~l~~I~~IErk~FP~nes~~~~-----f~~EL~k~n~~fl~a-~~~gkVvGYvm~~ 69 (82)
-.+.++++.++-+++|.+-=-|.-. -+++.-..++.++++ ..+|+|||++=..
T Consensus 13 ~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlL 71 (209)
T COG3916 13 FPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLL 71 (209)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEec
Confidence 4678899999999999764335322 223444668889988 6799999998544
No 58
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=57.22 E-value=57 Score=22.89 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=34.1
Q ss_pred ceEEecCCCCcchHhHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEEeccCCceeeeecc
Q 048356 6 TVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMYAWPTSLSASITKL 81 (82)
Q Consensus 6 ~~~~l~~~~~~a~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~kl 81 (82)
+|.+|..-+++..-||..|. |.. +..+.+........++.|.=|+++.|=+-+. ..|-.+.++-|
T Consensus 3 TI~rl~~ls~Qd~iDL~KIw-------p~~---~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~-~~~~~~~L~~l 67 (128)
T PF12568_consen 3 TIERLTTLSEQDRIDLAKIW-------PQQ---DPEQLEQWLDEGHRLFAARFNDRLLGAVKVT-ISGQQAELSDL 67 (128)
T ss_dssp EEEE-SS--HHHHHHHHHH--------TTS-------------SSEEEEEEEETTEEEEEEEEE-EETTEEEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHhC-------CCC---CHHHHHHHhccCCeEEEEEechheeeeEEEE-EcCcceEEeeE
Confidence 57777755544444554444 642 3334444455566666666799999998877 56777777654
No 59
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=56.02 E-value=20 Score=21.12 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhcc-CceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKK-NSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~-n~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-.-.+.+.++++. ...+-+.+. ...+.+...+|+++|++-
T Consensus 56 v~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~g~~~Gvit 102 (109)
T cd04583 56 LEDIMLEDVFTVQPDASLR-DVLGLVLKRGPKYVPVVDEDGKLVGLIT 102 (109)
T ss_pred HhHhhcCCceEECCCCcHH-HHHHHHHHcCCceeeEECCCCeEEEEEe
Confidence 4455543344444454442 122333343 344444445789999985
No 60
>PHA02087 hypothetical protein
Probab=54.97 E-value=5.3 Score=26.13 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=26.4
Q ss_pred hhcCCCCcccchhHHHHhhcc-CceEEEEEECCeEEEEEEEeccCCcee
Q 048356 29 KKIFPKHESLARSFDEELKKK-NSGLLYIHIHGQVVGYVMYAWPTSLSA 76 (82)
Q Consensus 29 rk~FP~nes~~~~f~~EL~k~-n~~fl~a~~~gkVvGYvm~~~~t~~~~ 76 (82)
|+.|.+.++|..+| .|- |.-|..-...+|.|||.+.. +-|...
T Consensus 14 rk~fa~s~~yn~~f----~k~mpdefw~~~d~nk~v~y~lvd-sdg~~i 57 (83)
T PHA02087 14 RKAFAESEWYNEEF----EKFMPDEFWAKFDPNKLVQYMLVD-SDGVKI 57 (83)
T ss_pred HHHHHhhhHHHHHH----HhhCcHHHHhcCCCccceeEEEEc-CCCcEE
Confidence 67787766665544 333 45566555567888888755 445433
No 61
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=53.49 E-value=36 Score=20.22 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=17.8
Q ss_pred HHHHhhccCceEEEEEECCeEEEEEE
Q 048356 42 FDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 42 f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
..+.+.+.+..++.+..+|+++|++-
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~~~~G~it 104 (111)
T cd04589 79 ALLLMTRHRIHRVVVREGGEVVGVLE 104 (111)
T ss_pred HHHHHHHhCccEEEEeeCCEEEEEEE
Confidence 44555666666666655799999975
No 62
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=53.34 E-value=30 Score=20.82 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-.--+++.+++.. .....+.+.+..++.+..+|+++|++-
T Consensus 62 v~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~~~~Gvi~ 107 (114)
T cd04630 62 VYEIMTKPLISVSPDMDIK-YCARLMERTNIRRAPVVENNELIGIIS 107 (114)
T ss_pred HHHHhcCCCeeECCCCCHH-HHHHHHHHcCCCEeeEeeCCEEEEEEE
Confidence 5555543334456665552 233445555555555544699999874
No 63
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=52.74 E-value=30 Score=20.49 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.--+++.++++.+ ..+.+.+.+...+.+..+|+++|++-
T Consensus 59 i~~~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~Vv~~~~~~Giit 104 (111)
T cd04800 59 VSEVMTAPPITIPPDATVFE-ALLLMLERGIHHLPVVDDGRLVGVIS 104 (111)
T ss_pred HHHHhCCCCeEECCCCcHHH-HHHHHHHcCCCeeeEeECCEEEEEEE
Confidence 55665544445555544422 33444555444444444599999875
No 64
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=51.88 E-value=27 Score=20.82 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=26.9
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHhhccCceE-EEEEECCeEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSGL-LYIHIHGQVVGYVM 67 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~f-l~a~~~gkVvGYvm 67 (82)
.+.+++.-.-.+++.+++.. ...+.+.+.+... .+...+|+++|++-
T Consensus 54 ~v~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~~~~~G~it 101 (108)
T cd04596 54 TIEKVMTKNPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDNKKLLGIIS 101 (108)
T ss_pred cHHHHhcCCCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCCCCEEEEEE
Confidence 46666654445566665552 2334555444444 44445789999985
No 65
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=51.86 E-value=55 Score=24.05 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=41.7
Q ss_pred CcceEEecCCC-CcchHhHHHHHHHhhhcCCCCcccchh-HHHH-hhcc-CceEEEEEE---CCeEEEEEEEecc
Q 048356 4 NGTVTELQRNS-TNWTVVVDEIVKMEKKIFPKHESLARS-FDEE-LKKK-NSGLLYIHI---HGQVVGYVMYAWP 71 (82)
Q Consensus 4 ~~~~~~l~~~~-~~a~~~l~~I~~IErk~FP~nes~~~~-f~~E-L~k~-n~~fl~a~~---~gkVvGYvm~~~~ 71 (82)
+.+|+...|++ +.+.+.+-|...-||-.+|-- -+.+ |... +..+ -...++++. ++.++|+++|...
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~--~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ 75 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVE--ATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNN 75 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchh--hchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecc
Confidence 34566666654 344556777788899888742 4444 4333 3433 455566666 7899999998743
No 66
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=51.16 E-value=36 Score=20.18 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.+++.. .-.+.+.+.+...+.+..+|+++|++-
T Consensus 60 v~~~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~~~~~Gvvt 105 (112)
T cd04625 60 VRAIMNPEPIVASPDDSID-EVRRLMVERHLRYLPVLDGGTLLGVIS 105 (112)
T ss_pred HHHHhCCCCeEECCCCCHH-HHHHHHHHcCCCeeeEEECCEEEEEEE
Confidence 4555543333555554442 233444455444444445899999875
No 67
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=49.11 E-value=33 Score=20.69 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=24.3
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.--+++.+++.. ...+.+.+.+ ..+.+...+|+++|++-
T Consensus 69 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~g~~~Gvit 115 (122)
T cd04635 69 VEKIMSTPVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEKDQLVGIVD 115 (122)
T ss_pred HHHHhcCCCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCCCcEEEEEE
Confidence 4444432223445554442 2345555554 44555555689999975
No 68
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=49.01 E-value=30 Score=20.53 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=26.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCc-eEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNS-GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~-~fl~a~~~gkVvGYvm 67 (82)
+.++++-+-.+++.++++.+ ..+.+...+. .+.+...+|+++|++-
T Consensus 60 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~V~~~~~~~~G~it 106 (113)
T cd04622 60 VGDVMTRGVVTVTEDDDVDE-AARLMREHQVRRLPVVDDDGRLVGIVS 106 (113)
T ss_pred HHHhccCCccEECCCCCHHH-HHHHHHHcCCCeeeEECCCCcEEEEEE
Confidence 66666555566666655422 3344544444 4444444589999874
No 69
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=48.73 E-value=32 Score=20.33 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.++++-...+++.+++..+ ..+-+.+.+ ..+.|...+|+++|++=
T Consensus 61 v~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~Vv~~~~~~iG~it 107 (114)
T cd04604 61 VADVMTRNPKTIDPDALAAE-ALELMEENKITALPVVDDNGRPVGVLH 107 (114)
T ss_pred HHHhhccCCeEECCCCcHHH-HHHHHHHcCCCEEEEECCCCCEEEEEE
Confidence 55565545555555544422 233444443 45555555799999874
No 70
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=48.68 E-value=24 Score=20.71 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-.--+++.++++. ...+.+.+.+ ..+.+...+|+++|++=
T Consensus 54 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~ 100 (107)
T cd04610 54 VEEIMSKDLVVAVPEMDIM-DAARVMFRTGISKLPVVDENNNLVGIIT 100 (107)
T ss_pred HHHhCCCCCeEECCCCCHH-HHHHHHHHhCCCeEeEECCCCeEEEEEE
Confidence 5566643334445454442 2334444443 34555555789999974
No 71
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=48.50 E-value=49 Score=19.65 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=24.5
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-+--+++.++++.+ ..+.+.+.+..++.+..+|+++|++-
T Consensus 52 ~~~~~~~~~~~v~~~~~l~~-a~~~~~~~~~~~~~Vv~~~~~iGvit 97 (104)
T cd04594 52 VVDYIVRGIPYVRLTSTAEE-AWEVMMKNKTRWCPVVDDGKFKGIVT 97 (104)
T ss_pred hhhhhhcCCcEEcCCCCHHH-HHHHHHHcCcceEEEEECCEEEEEEE
Confidence 44555544445555555532 33444444444333334899999875
No 72
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=48.29 E-value=12 Score=20.41 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHHhhccCceEEEEE-ECCeEEEEEE
Q 048356 42 FDEELKKKNSGLLYIH-IHGQVVGYVM 67 (82)
Q Consensus 42 f~~EL~k~n~~fl~a~-~~gkVvGYvm 67 (82)
..+.+++.+...+... .+|+++|++-
T Consensus 21 ~~~~~~~~~~~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 21 ALEIMRKNGISRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp HHHHHHHHTSSEEEEESTTSBEEEEEE
T ss_pred HHHHHHHcCCcEEEEEecCCEEEEEEE
Confidence 4455555555544444 6899999874
No 73
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=48.16 E-value=30 Score=20.98 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.++++-+--+++.+++..+ ..+.+.+.+ ..+.+...+|+++|.+=
T Consensus 71 i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~Vv~~~g~~~Gvit 117 (124)
T cd04600 71 VGDIMSPPVVTVRPDTPIAE-LVPLLADGGHHHVPVVDEDRRLVGIVT 117 (124)
T ss_pred HHHhccCCCeeeCCCCcHHH-HHHHHHhcCCCceeEEcCCCCEEEEEE
Confidence 55555444445555555422 334555443 44555555899999874
No 74
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=47.77 E-value=50 Score=19.77 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=25.0
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.--+++.+++.. ...+.+...+...+++..+|+++|++=
T Consensus 69 v~~~~~~~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~~~~~Gvv~ 114 (121)
T cd04584 69 VKEIMTKDVITVHPLDTVE-EAALLMREHRIGCLPVVEDGRLVGIIT 114 (121)
T ss_pred HHHHhhCCCeEECCCCcHH-HHHHHHHHcCCCeEEEeeCCEEEEEEE
Confidence 5555554444555554442 233444444444455544699999875
No 75
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=47.47 E-value=20 Score=21.35 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCc-eEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNS-GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~-~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.+++.. .....+...+. .+.+...+|+++|++=
T Consensus 60 v~~i~~~~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs 106 (113)
T cd04587 60 VERVMTPNPVCATSDTPVL-EALHLMVQGKFRHLPVVDKSGQVVGLLD 106 (113)
T ss_pred HHHhcCCCCeEEcCCCCHH-HHHHHHHHcCCCcccEECCCCCEEEEEE
Confidence 5555544444555554442 23344444444 3444444689999874
No 76
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=47.43 E-value=26 Score=20.89 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=26.0
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
.+.++++-+--+++.+++..+ ....+.+.+ ..+++...+|+++|++=
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~Vv~~~~~~~Gvvt 115 (122)
T cd04585 68 KVSDIMTRDPITVSPDASVEE-AAELMLERKISGLPVVDDQGRLVGIIT 115 (122)
T ss_pred CHHHhccCCCeEeCCCCcHHH-HHHHHHHcCCCceeEECCCCcEEEEEE
Confidence 355565555556666555422 334444443 33555544589999874
No 77
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=47.31 E-value=36 Score=20.53 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=27.2
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEE-ECCeEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIH-IHGQVVGYVM 67 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~-~~gkVvGYvm 67 (82)
.+.++++-+-..++.++++. ...+.+.+.+...+.+. .+|+++|++-
T Consensus 68 ~v~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~Gvit 115 (122)
T cd04803 68 PVAEVMKTDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDKGTLVGIIT 115 (122)
T ss_pred CHHHhhCCCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCCCCEEEEEE
Confidence 45666655555666665552 23455555544444444 3589999874
No 78
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=46.26 E-value=48 Score=18.83 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEEE
Q 048356 22 DEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVMY 68 (82)
Q Consensus 22 ~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm~ 68 (82)
.++++-+-..++++++..+ ...-+.+.+ ..+.+...+|+++|++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~V~~~~~~~~G~i~~ 107 (113)
T cd02205 61 GDVMTRDVVTVSPDTSLEE-AAELMLEHGIRRLPVVDDEGRLVGIVTR 107 (113)
T ss_pred HHHhcCCceecCCCcCHHH-HHHHHHHcCCCEEEEEcCCCcEEEEEEH
Confidence 3444433344444444422 223444443 444454456999999863
No 79
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=46.00 E-value=42 Score=19.72 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=26.4
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEE-EE-CCeEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYI-HI-HGQVVGYVM 67 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a-~~-~gkVvGYvm 67 (82)
.+.++++-.-.+.+.++++.+ ..+-+.+.+...++. .. +|+++|++-
T Consensus 59 ~v~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt 107 (114)
T cd04613 59 VASDIMTKPPVVVYPEDSLED-ALKKFEDSDYEQLPVVDDDPGKLLGILS 107 (114)
T ss_pred EHHHhccCCCcEEcCCCCHHH-HHHHHhhCCccEeeEEeCCCCEEEEEEE
Confidence 355666555555655544422 334455555544444 44 589999875
No 80
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=45.42 E-value=46 Score=19.38 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.+++.. ...+.+.+.+...+.+..+|+++|++-
T Consensus 53 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~~~~G~it 98 (105)
T cd04599 53 VADAMTREVVTISPEASLL-EAKRLMEEKKIERLPVLRERKLVGIIT 98 (105)
T ss_pred HHHHccCCCEEECCCCCHH-HHHHHHHHcCCCEeeEEECCEEEEEEE
Confidence 5555544445556654442 244555666555444444699999874
No 81
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=44.75 E-value=58 Score=24.43 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=30.2
Q ss_pred hHhHHHHHH--HhhhcCCCCcccchhHHHHhhcc---CceEEEEE-ECCeEEEEEEEe
Q 048356 18 TVVVDEIVK--MEKKIFPKHESLARSFDEELKKK---NSGLLYIH-IHGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~--IErk~FP~nes~~~~f~~EL~k~---n~~fl~a~-~~gkVvGYvm~~ 69 (82)
.+..-++.. ++|.-+| .+++.|++.|.+. +..+++++ .+|+++|-+++.
T Consensus 160 l~~F~~l~~~t~~r~g~p---~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~ 214 (330)
T TIGR03019 160 LDRFYDVYAENMRDLGTP---VFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSF 214 (330)
T ss_pred HHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEE
Confidence 344444443 5555555 3788899988532 44455667 589988876654
No 82
>PRK01908 electron transport complex protein RnfG; Validated
Probab=43.82 E-value=1.1e+02 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=18.4
Q ss_pred ceEEEEEECCeEEEEEEEeccC-Cceeee
Q 048356 51 SGLLYIHIHGQVVGYVMYAWPT-SLSASI 78 (82)
Q Consensus 51 ~~fl~a~~~gkVvGYvm~~~~t-~~~~~i 78 (82)
.....+..+|+++||+.-.+.. |....|
T Consensus 73 ~~vy~a~~~g~~~g~~~~~~~~~Gy~G~I 101 (205)
T PRK01908 73 HRVYIARKDGKPVAAAIEATAPDGYSGAI 101 (205)
T ss_pred eEEEEEEeCCeEEEEEEEecCCCCCCceE
Confidence 3455566789999999865543 554443
No 83
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=43.81 E-value=39 Score=16.19 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=14.1
Q ss_pred HHHHhhccCc-eEEEEEECCeEEEEEE
Q 048356 42 FDEELKKKNS-GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 42 f~~EL~k~n~-~fl~a~~~gkVvGYvm 67 (82)
....+.+.+. .+.+...+++++|++-
T Consensus 14 ~~~~~~~~~~~~~~v~~~~~~~~g~i~ 40 (49)
T smart00116 14 ALELLREHGIRRLPVVDEEGRLVGIVT 40 (49)
T ss_pred HHHHHHHhCCCcccEECCCCeEEEEEE
Confidence 3344544433 3333344588999875
No 84
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=42.72 E-value=44 Score=19.81 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.+++.. ...+-+.+.+ ..+++...+|+++|++-
T Consensus 60 i~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt 106 (113)
T cd04615 60 VREVMNSPVITIDANDSIA-KARWLMSNNNISRLPVLDDKGKVGGIVT 106 (113)
T ss_pred HHHhccCCceEECCCCcHH-HHHHHHHHcCCCeeeEECCCCeEEEEEE
Confidence 3444443334444443331 2334444444 34555555689999874
No 85
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=42.01 E-value=51 Score=19.52 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-.-.+++.+++.. ...+.+.+.+...+.+..+++++|++-
T Consensus 60 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~~~~Gvi~ 105 (112)
T cd04802 60 VGEVMSTPLITIDPNASLN-EAAKLMAKHGIKRLPVVDDDELVGIVT 105 (112)
T ss_pred HHHhcCCCcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCCEEEEEEE
Confidence 4455543344555555552 244555555554444444568999875
No 86
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=41.96 E-value=50 Score=19.95 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEE-ECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIH-IHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~-~~gkVvGYvm 67 (82)
+.+++.-.--+++.++++. ...+.+.+.+..++... .+|+++|++-
T Consensus 69 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~~~~~Gvit 115 (122)
T cd04637 69 AHQIMTRDPITVSPDTPVD-EASKLLLENSISCLPVVDENGQLIGIIT 115 (122)
T ss_pred HHHhhcCCCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCCCCEEEEEE
Confidence 4444443333344443332 23344444444444443 4589999974
No 87
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=41.33 E-value=41 Score=19.76 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEE-EECCeEEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYI-HIHGQVVGYVMY 68 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a-~~~gkVvGYvm~ 68 (82)
+.+++.-.--.++.+++.. ...+.+.+.+...+++ ..+|+++|++-.
T Consensus 58 v~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~ 105 (111)
T cd04611 58 VGEVMSSPLLTVPADTSLY-DARQLMREHGIRHLVVVDDDGELLGLLSQ 105 (111)
T ss_pred HHHhcCCCceEECCCCCHH-HHHHHHHHcCCeEEEEECCCCcEEEEEEh
Confidence 3444332233345444442 2445555554444444 446999998753
No 88
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=41.26 E-value=64 Score=20.63 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.+++.. .....+.+.+...+++..+|+++|++-
T Consensus 91 v~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~~~~~Gvvt 136 (143)
T cd04634 91 VRDIMTKKVITISPDASIE-DAAELMVRHKIKRLPVVEDGRLVGIVT 136 (143)
T ss_pred HHHHcCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEEECCEEEEEEE
Confidence 4556655566676665552 233444555554444444599999874
No 89
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=41.24 E-value=45 Score=19.94 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhcc-CceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKK-NSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~-n~~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.+++..+ ..+.+.+. ...+.+...+|+++|.+-
T Consensus 60 v~~~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~Vv~~~~~~~Gvit 106 (113)
T cd04607 60 VSEVMNRNPITAKVGSSREE-ILALMRERSIRHLPILDEEGRVVGLAT 106 (113)
T ss_pred HHHhhcCCCEEEcCCCCHHH-HHHHHHHCCCCEEEEECCCCCEEEEEE
Confidence 55665433344555544422 33445545 444555555789999874
No 90
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=41.10 E-value=39 Score=24.43 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=28.0
Q ss_pred hHhHHHHHHHhhhcCCCC----cccch--hHHH-Hhhcc-Cc--eEEEEEEC-CeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKH----ESLAR--SFDE-ELKKK-NS--GLLYIHIH-GQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~n----es~~~--~f~~-EL~k~-n~--~fl~a~~~-gkVvGYvm~~ 69 (82)
.+|++.|.+|=+.-.... |-.|. ..+. -+... .. -++|++.+ |+|+||+.+.
T Consensus 9 ~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~ 71 (169)
T COG1247 9 AADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAG 71 (169)
T ss_pred HHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEee
Confidence 678888888855544221 00111 1222 22233 22 45666655 9999999865
No 91
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=40.20 E-value=80 Score=18.67 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHhhccCceEEEEEECCeEEEEEEE
Q 048356 42 FDEELKKKNSGLLYIHIHGQVVGYVMY 68 (82)
Q Consensus 42 f~~EL~k~n~~fl~a~~~gkVvGYvm~ 68 (82)
..+-+.+.+..++.+..+|+++|++-.
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~~~~G~it~ 105 (111)
T cd04626 79 ALDIMREKQIGRLPVVDDNKLIGVVRT 105 (111)
T ss_pred HHHHHHHcCCCeeeEeECCEEEEEEEh
Confidence 334445555555555446999999853
No 92
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=39.75 E-value=54 Score=19.33 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCce-EEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSG-LLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~-fl~a~~~gkVvGYvm 67 (82)
+.++++-+-.+++.+++.. ...+.+.+.+.. +.+...+|+++|++-
T Consensus 57 v~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~G~i~ 103 (110)
T cd04588 57 VKDVMTKDVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDEGRPVGIIT 103 (110)
T ss_pred HHHHhcCCceEECCCCCHH-HHHHHHHhcCCCEEEEECCCCCEEEEEE
Confidence 4455543444455544442 233444455544 444444589999875
No 93
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=39.04 E-value=54 Score=19.23 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=23.3
Q ss_pred HHHHHhhhcCCCCcccchhHHHHhhccCce-EEEEEECCeEEEEEE
Q 048356 23 EIVKMEKKIFPKHESLARSFDEELKKKNSG-LLYIHIHGQVVGYVM 67 (82)
Q Consensus 23 ~I~~IErk~FP~nes~~~~f~~EL~k~n~~-fl~a~~~gkVvGYvm 67 (82)
+++.-+--.++.++++. ...+.+.+.+.. +++...+|+++|++-
T Consensus 60 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~G~it 104 (111)
T cd04612 60 DVMTRDPVTASPDETLR-DALKRMAERDIGRLPVVDDSGRLVGIVS 104 (111)
T ss_pred HhccCCCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCCCCEEEEEE
Confidence 33333344455554442 233455555444 444444699999875
No 94
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=38.37 E-value=52 Score=20.50 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.+|+.=+--+++.+++..+ ..+-+.+.+ ..+.|...+|+++|.+-
T Consensus 60 v~dim~~~~~~v~~~~~l~~-a~~~~~~~~~~~lpVvd~~~~l~Givt 106 (113)
T cd04597 60 VRDVINRKPVTARPNDPLRE-ALNLMHEHNIRTLPVVDDDGTPAGIIT 106 (113)
T ss_pred HHHhcCCCCCEECCcCcHHH-HHHHHHHcCCCEEEEECCCCeEEEEEE
Confidence 44444333344555544422 334444444 45555555789999874
No 95
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=37.49 E-value=57 Score=20.34 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=25.6
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHhhccCce-EEEEEECCeEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSG-LLYIHIHGQVVGYVM 67 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~-fl~a~~~gkVvGYvm 67 (82)
.+.++++-.-.+++.+++.. ..+..+.+.+.. +.+.. +|+++|.+-
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~g~~~Gvit 128 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-GGRLVGIVS 128 (135)
T ss_pred CHHHHhCCCceEeCCCCcHH-HHHHHHHHcCCCccCEec-CCEEEEEEE
Confidence 35555533334555554442 234555555444 55555 999999875
No 96
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=37.39 E-value=23 Score=23.23 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=21.7
Q ss_pred hhcCCCCcccchhHHHHhhccCceEEEEEE----------CCeEEEEEE
Q 048356 29 KKIFPKHESLARSFDEELKKKNSGLLYIHI----------HGQVVGYVM 67 (82)
Q Consensus 29 rk~FP~nes~~~~f~~EL~k~n~~fl~a~~----------~gkVvGYvm 67 (82)
|+.|++. .| +.||..+-....+.+..|+ +|+|+|++.
T Consensus 34 K~~l~k~-~y-ry~FK~~d~df~gvVkeEi~dD~~~LP~~eGkiv~~v~ 80 (83)
T smart00021 34 KEVLTKK-NY-KYYFKSMDDDFGGVVKEEIRDDSARLPCFNGRVVSWLV 80 (83)
T ss_pred HHhhccC-Cc-EEEEEecCcccCCeeEEEEcCCcccccccCCEEEEEEE
Confidence 3445553 34 2344555444225566665 899999987
No 97
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=35.23 E-value=56 Score=19.82 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=11.3
Q ss_pred ceEEEEEE---CCeEEEEEE
Q 048356 51 SGLLYIHI---HGQVVGYVM 67 (82)
Q Consensus 51 ~~fl~a~~---~gkVvGYvm 67 (82)
+.+.+... +|+++||+-
T Consensus 26 ~~~~V~~~~~~~~~~~G~v~ 45 (105)
T cd04591 26 NGFPVVDSTEESPRLVGYIL 45 (105)
T ss_pred CCcceEcCCCCCCEEEEEEe
Confidence 44555444 589999984
No 98
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.80 E-value=69 Score=19.44 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=19.9
Q ss_pred cCCCCcccchhHHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 31 IFPKHESLARSFDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 31 ~FP~nes~~~~f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+++.+.+..+ ..+.+.+.+ ..+.+...+|+++|++-
T Consensus 5 ~i~~~~~l~~-a~~~~~~~~~~~~pVv~~~~~~~Giv~ 41 (120)
T cd04641 5 TARPDTPLID-VLDMLVERRVSALPIVDENGKVVDVYS 41 (120)
T ss_pred EEcCCCCHHH-HHHHHHHcCCCeeeEECCCCeEEEEEe
Confidence 3444444422 334454443 45555545899999974
No 99
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.58 E-value=77 Score=18.51 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=18.8
Q ss_pred cCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 31 IFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 31 ~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
.++.+++.. ...+-+.+.+...+.+..+|+++|++-
T Consensus 71 ~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~~~~~Gvit 106 (113)
T cd04623 71 TVTPDDTVD-EAMALMTERRFRHLPVVDGGKLVGIVS 106 (113)
T ss_pred EECCCCcHH-HHHHHHHHcCCCEeEEEeCCEEEEEEE
Confidence 344443331 233334444444444444699999985
No 100
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=33.59 E-value=48 Score=19.96 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCC--CcccchhHHHHhhccCc-eEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPK--HESLARSFDEELKKKNS-GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~--nes~~~~f~~EL~k~n~-~fl~a~~~gkVvGYvm 67 (82)
+.++++-...++.. ++++ ....+.+.+.+. .+.+...+|+++|++-
T Consensus 59 v~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~pVv~~~~~~~Gvit 107 (114)
T cd04602 59 LSEVMTPREVLVVAPTGITL-EEANEILRESKKGKLPIVNDDGELVALVT 107 (114)
T ss_pred HHHhcCCCceEEECCCCCCH-HHHHHHHHhcCCCceeEECCCCeEEEEEE
Confidence 55566544444422 3333 223345555544 4555555789999875
No 101
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=33.56 E-value=67 Score=19.07 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCc-eEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNS-GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~-~fl~a~~~gkVvGYvm 67 (82)
+.++++-.-.+++.++++. ...+-+.+.+. .+++...+|+++|++-
T Consensus 55 v~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~Gvit 101 (109)
T cd04606 55 VSDIMDTDVISVSADDDQE-EVARLFEKYDLLALPVVDEEGRLVGIIT 101 (109)
T ss_pred HHHHhCCCCeEEcCCCCHH-HHHHHHHHcCCceeeeECCCCcEEEEEE
Confidence 4445433333444444442 23344444444 3444444789999875
No 102
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=33.14 E-value=78 Score=18.64 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCce-EEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSG-LLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~-fl~a~~~gkVvGYvm 67 (82)
+.+++.-.--+++.+++.. ...+.+.+.+.. +.+...+|+++|++-
T Consensus 58 v~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~G~it 104 (111)
T cd04639 58 VRGVMRRDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGSGRLVGLVT 104 (111)
T ss_pred HHHHhcCCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCCCCEEEEEE
Confidence 4455433333334443332 233444444444 444433589999875
No 103
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=33.13 E-value=70 Score=19.18 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=23.1
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.+++.-.-.+++.+++.. .....+.+.+...+.+..+|+++|++=
T Consensus 69 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~~~~Gvi~ 114 (121)
T cd04633 69 VSDIMTRPVITIEPDTSVS-DVASLMLENNIGGLPVVDDGKLVGIVT 114 (121)
T ss_pred HHHHccCCceEECCCCcHH-HHHHHHHHcCCCcccEEECCEEEEEEE
Confidence 4444443444455444442 233444444444443333599999874
No 104
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=32.21 E-value=92 Score=18.59 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEE-EEEEC--CeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLL-YIHIH--GQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl-~a~~~--gkVvGYvm 67 (82)
+.+++.-+-.+++.+++.. ...+.+.+.+...+ +...+ |+++|++-
T Consensus 60 ~~~~~~~~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit 108 (115)
T cd04593 60 VDEVATPPLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLT 108 (115)
T ss_pred HHHhccCCceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEE
Confidence 4445444444555554442 23344455555444 44444 79999874
No 105
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=29.81 E-value=2e+02 Score=20.86 Aligned_cols=52 Identities=8% Similarity=0.201 Sum_probs=34.5
Q ss_pred hHhHHHHHHHhhhcCCCCcccch----h-HHHHhhccCceEEEEEE-CCeEEEEEEEe
Q 048356 18 TVVVDEIVKMEKKIFPKHESLAR----S-FDEELKKKNSGLLYIHI-HGQVVGYVMYA 69 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~----~-f~~EL~k~n~~fl~a~~-~gkVvGYvm~~ 69 (82)
.+.+++..++=+++|-+--.|.- . -.++.-.....+|++.. +|+|||++=-.
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLl 72 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLL 72 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecc
Confidence 67899999999999975333421 1 11333444566777764 68999986433
No 106
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=29.48 E-value=24 Score=19.66 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=23.0
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhhccC
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELKKKN 50 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~k~n 50 (82)
.++..+|+.|.|.-| +++|.|=-+.++|.-
T Consensus 4 d~dF~~vFgm~~~eF---~~lP~WKq~~lKK~~ 33 (36)
T PF02209_consen 4 DEDFEKVFGMSREEF---YKLPKWKQNNLKKKA 33 (36)
T ss_dssp HHHHHHHHSS-HHHH---HHS-HHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHH---HHChHHHHHHHHHHh
Confidence 468899999999999 668888778887653
No 107
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=29.02 E-value=1.2e+02 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=14.8
Q ss_pred CceEEEEEECCeEEEEEEEeccC
Q 048356 50 NSGLLYIHIHGQVVGYVMYAWPT 72 (82)
Q Consensus 50 n~~fl~a~~~gkVvGYvm~~~~t 72 (82)
+.++++ ++|+++||+|.+.+.
T Consensus 207 D~Rv~v--v~g~vv~~ai~R~~~ 227 (312)
T TIGR01380 207 DKRILL--IDGEPIGAAVARIPA 227 (312)
T ss_pred CEEEEE--ECCeEEEEEEEecCC
Confidence 444443 599999999988543
No 108
>PHA02770 hypothetical protein; Provisional
Probab=28.90 E-value=66 Score=20.82 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.3
Q ss_pred CceEEEEEECCeEEEEEE
Q 048356 50 NSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 50 n~~fl~a~~~gkVvGYvm 67 (82)
|.-++||-..++++||+-
T Consensus 30 pqilfyakkrnri~gyle 47 (81)
T PHA02770 30 PQILFYAKKRNRITGYLE 47 (81)
T ss_pred ceeeEeeeccCeEEEEEE
Confidence 566778888899999974
No 109
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=28.66 E-value=31 Score=26.27 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=16.4
Q ss_pred hhhcCCCCcccchh-HHHHhhcc
Q 048356 28 EKKIFPKHESLARS-FDEELKKK 49 (82)
Q Consensus 28 Erk~FP~nes~~~~-f~~EL~k~ 49 (82)
||.=||.| |.+. |.++|+++
T Consensus 7 ~~Q~ypDN--Ytd~sFL~~l~~N 27 (282)
T PF06432_consen 7 EKQPYPDN--YTDPSFLEELRRN 27 (282)
T ss_pred cCCCCCCC--CCCHHHHHHHHHc
Confidence 67789977 9886 88999876
No 110
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=28.41 E-value=1.1e+02 Score=19.45 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=25.5
Q ss_pred hHHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 20 ~l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
.+.+++.-+-..++.+++.. .....+.+.+...+.+..+|+++|++-
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~~~~Gvit 128 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVV-DAAKLMLEANISGLPVVDNDNIVGVIT 128 (135)
T ss_pred cHHHhcCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEeCCEEEEEEE
Confidence 35666643444455555552 233445444444444444699999874
No 111
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=27.89 E-value=27 Score=28.60 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=14.3
Q ss_pred HHHHHHHhhhcCCCCccc
Q 048356 21 VDEIVKMEKKIFPKHESL 38 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~ 38 (82)
=+||.||||+...+| |
T Consensus 190 ReQIaRLEKEFyrEN--Y 205 (408)
T KOG0844|consen 190 REQIARLEKEFYREN--Y 205 (408)
T ss_pred HHHHHHHHHHHHHhc--c
Confidence 489999999999877 7
No 112
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.88 E-value=1e+02 Score=18.18 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=22.4
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVMY 68 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm~ 68 (82)
+.++++-.--.++.+++..+ ....+.+.+...+++..+|+++|++-.
T Consensus 62 v~~~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~Vv~~~~~~Gvit~ 108 (114)
T cd04629 62 VRDIMTTEVLTVSPDDSIVD-LAQLMLKAKPKRYPVVDDGKLVGQISR 108 (114)
T ss_pred HHHHhccCceEECCCCcHHH-HHHHHHHhCCCccCEEECCEEEEEEEH
Confidence 44444322333444444422 334444443333434335999998753
No 113
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=27.52 E-value=1.9e+02 Score=19.12 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=12.9
Q ss_pred EEEEEECCeEEEEEEEe
Q 048356 53 LLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 53 fl~a~~~gkVvGYvm~~ 69 (82)
++++..+|++||++-+.
T Consensus 69 ~~~i~~~~~~iG~~~l~ 85 (179)
T PRK10151 69 MFMIFKEDELIGVLSFN 85 (179)
T ss_pred EEEEEECCEEEEEEEEE
Confidence 56666799999998643
No 114
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=26.93 E-value=1.1e+02 Score=18.08 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHhhccC-ceEEEEEECCeEEEEEE
Q 048356 44 EELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 44 ~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
+.+.+.+ ..++++..+|+++|++-
T Consensus 17 ~~~~~~~~~~~~~v~~~~~~~G~v~ 41 (115)
T cd04620 17 ALMSQQGDSSCVLVVEKGRLLGIFT 41 (115)
T ss_pred HHHHhcCCCceEEEcCCCcEEEEEe
Confidence 4443333 44555544789999984
No 115
>PRK14127 cell division protein GpsB; Provisional
Probab=26.89 E-value=57 Score=22.14 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=16.6
Q ss_pred cchHhHHHHHHHhhhcCCCC
Q 048356 16 NWTVVVDEIVKMEKKIFPKH 35 (82)
Q Consensus 16 ~a~~~l~~I~~IErk~FP~n 35 (82)
+-.+.|..|.+|||++|-+.
T Consensus 86 tn~DiLKRls~LEk~VFg~~ 105 (109)
T PRK14127 86 TNYDILKRLSNLEKHVFGSQ 105 (109)
T ss_pred chHHHHHHHHHHHHHHhccc
Confidence 44678999999999999653
No 116
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=26.56 E-value=1.4e+02 Score=17.96 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=19.8
Q ss_pred CCCCcccchhHHHHhhccC-ceEEEEEE-CCeEEEEEE
Q 048356 32 FPKHESLARSFDEELKKKN-SGLLYIHI-HGQVVGYVM 67 (82)
Q Consensus 32 FP~nes~~~~f~~EL~k~n-~~fl~a~~-~gkVvGYvm 67 (82)
++.+.+.. ...+.+++.+ .++.+... +|+++|++-
T Consensus 6 v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt 42 (98)
T cd04618 6 FDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLT 42 (98)
T ss_pred ECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEE
Confidence 34444442 2335555554 55666554 489999885
No 117
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=25.20 E-value=1.7e+02 Score=17.77 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHhhccC-ceEEEEEEC-CeEEEEEE
Q 048356 44 EELKKKN-SGLLYIHIH-GQVVGYVM 67 (82)
Q Consensus 44 ~EL~k~n-~~fl~a~~~-gkVvGYvm 67 (82)
+.+.+.+ ..++|...+ |+++|++-
T Consensus 17 ~~~~~~~~~~~~V~d~~~~~~~Giv~ 42 (123)
T cd04627 17 EILGSGGIHRVAVTEEESGEVIGILS 42 (123)
T ss_pred HHHhhCCcceEEEEeCCCCcEEEEEE
Confidence 4444443 445555555 89999886
No 118
>PF02122 Peptidase_S39: Peptidase S39; InterPro: IPR000382 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. ORF2 of Potato leafroll virus (PLrV) encodes a polyprotein which is translated following a -1 frameshift. The polyprotein has a putative linear arrangement of membrane achor-VPg-peptidase-polmerase domains. The serine peptidase domain which is found in this group of sequences belongs to MEROPS peptidase family S39 (clan PA(S)). It is likely that the peptidase domain is involved in the cleavage of the polyprotein []. The nucleotide sequence for the RNA of PLrV has been determined [, ]. The sequence contains six large open reading frames (ORFs). The 5' coding region encodes two polypeptides of 28K and 70K, which overlap in different reading frames; it is suggested that the third ORF in the 5' block is translated by frameshift readthrough near the end of the 70K protein, yielding a 118K polypeptide []. Segments of the predicted amino acid sequences of these ORFs resemble those of known viral RNA polymerases, ATP-binding proteins and viral genome-linked proteins. The nucleotide sequence of the genomic RNA of Beet western yellows virus (BWYV) has been determined []. The sequence contains six long ORFs. A cluster of three of these ORFs, including the coat protein cistron, display extensive amino acid sequence similarity to corresponding ORFs of a second luteovirus: Barley yellow dwarf virus [].; GO: 0004252 serine-type endopeptidase activity, 0022415 viral reproductive process, 0016021 integral to membrane; PDB: 1ZYO_A.
Probab=25.16 E-value=28 Score=25.80 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=1.4
Q ss_pred CCeEEEEEEEe
Q 048356 59 HGQVVGYVMYA 69 (82)
Q Consensus 59 ~gkVvGYvm~~ 69 (82)
+|+.|||++|.
T Consensus 25 ~~~hvGya~cv 35 (203)
T PF02122_consen 25 DGSHVGYATCV 35 (203)
T ss_dssp ---------EE
T ss_pred cccccccceEE
Confidence 78999999985
No 119
>PF13988 DUF4225: Protein of unknown function (DUF4225)
Probab=24.79 E-value=55 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=13.8
Q ss_pred hccCceEEEEEE----CCeEEEEEEE
Q 048356 47 KKKNSGLLYIHI----HGQVVGYVMY 68 (82)
Q Consensus 47 ~k~n~~fl~a~~----~gkVvGYvm~ 68 (82)
++.+..-+|+.+ +.+++||+.-
T Consensus 18 Lr~~~ak~y~~v~~~e~~~~v~yvi~ 43 (168)
T PF13988_consen 18 LRTKDAKLYASVEFEENNKIVGYVIS 43 (168)
T ss_pred HhhCccceeeeeeehhhCCeeeeEee
Confidence 334455566644 6788888863
No 120
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=24.74 E-value=68 Score=18.78 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=12.2
Q ss_pred CceEEEEEECCeEEE
Q 048356 50 NSGLLYIHIHGQVVG 64 (82)
Q Consensus 50 n~~fl~a~~~gkVvG 64 (82)
...+++|.++|+.++
T Consensus 31 ~~~~~~A~Vng~~vd 45 (60)
T PF02824_consen 31 AKRAVAAKVNGQLVD 45 (60)
T ss_dssp HHCEEEEEETTEEEE
T ss_pred HhheeEEEEcCEECC
Confidence 456999999998876
No 121
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.63 E-value=1.4e+02 Score=17.67 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=11.8
Q ss_pred ceEEEEEECCeEEEEEE
Q 048356 51 SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 51 ~~fl~a~~~gkVvGYvm 67 (82)
..++|...+|+++|++-
T Consensus 26 ~~~~V~d~~~~~~G~v~ 42 (114)
T cd04801 26 RRFVVVDNEGRYVGIIS 42 (114)
T ss_pred eeEEEEcCCCcEEEEEE
Confidence 44555555689999986
No 122
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.55 E-value=1.4e+02 Score=17.89 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=15.1
Q ss_pred HHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 42 FDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 42 f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
..+.+.+.+ ..+++...+|+++|.+-
T Consensus 15 a~~~~~~~~~~~~~V~d~~~~~~G~v~ 41 (111)
T cd04603 15 AIKMINELGARAVVVVDEENKVLGQVT 41 (111)
T ss_pred HHHHHHHcCCCEEEEEcCCCCEEEEEE
Confidence 334444333 44555555789999884
No 123
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=23.69 E-value=1.2e+02 Score=22.57 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=23.5
Q ss_pred chhHHHHhhccCc---eEEEEEECCeEEEEEEEe
Q 048356 39 ARSFDEELKKKNS---GLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 39 ~~~f~~EL~k~n~---~fl~a~~~gkVvGYvm~~ 69 (82)
|+.|++.|+-++. .|=|....++=|||+.+.
T Consensus 39 p~~~~~~l~~~~~~~~~fs~~~~~~~~IGYi~i~ 72 (256)
T cd07561 39 PEDFLESLLSEKDGKDRFSYIVDGGKKVGYLVYN 72 (256)
T ss_pred HHHHHHHhhCccccCCceEEEeeCCCcEEEEEEC
Confidence 4568999974433 777777788889999976
No 124
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=23.66 E-value=1.5e+02 Score=17.58 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=23.9
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCc----eEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNS----GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~----~fl~a~~~gkVvGYvm 67 (82)
+.++++-+--+++.++... .....+.+.+. ..++...+|+++|++-
T Consensus 63 v~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs 112 (119)
T cd04598 63 VSEVMDPDPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEEGRYLGIGT 112 (119)
T ss_pred HHHhcCCCcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeCCeEEEEEE
Confidence 4455544444455554442 23344444442 2235555799999875
No 125
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=23.20 E-value=1.3e+02 Score=17.61 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=14.5
Q ss_pred HHhhccCce-EEEEEECCeEEEEEE
Q 048356 44 EELKKKNSG-LLYIHIHGQVVGYVM 67 (82)
Q Consensus 44 ~EL~k~n~~-fl~a~~~gkVvGYvm 67 (82)
+.+.+.+.. +.+...+|+++|++-
T Consensus 79 ~~~~~~~~~~~~Vv~~~~~~~G~v~ 103 (110)
T cd04605 79 RKMERHNISALPVVDAENRVIGIIT 103 (110)
T ss_pred HHHHHhCCCEEeEECCCCcEEEEEE
Confidence 444444433 444445789999985
No 126
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.18 E-value=1.5e+02 Score=18.18 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHhhccCc-eEEEEEECCeEEEEEE
Q 048356 42 FDEELKKKNS-GLLYIHIHGQVVGYVM 67 (82)
Q Consensus 42 f~~EL~k~n~-~fl~a~~~gkVvGYvm 67 (82)
..+.+.+.+. .++|...+|+++|++=
T Consensus 15 a~~~~~~~~~~~~~V~d~~~~~~Giv~ 41 (126)
T cd04640 15 ALELMIKHGVRLLLVVDSDDNFIGVIT 41 (126)
T ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEE
Confidence 3344444454 3444444689999985
No 127
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.10 E-value=1.7e+02 Score=17.49 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEE-ECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIH-IHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~-~~gkVvGYvm 67 (82)
+.++++-.--+.+.+++.. ...+-+.+.+...+.+. .+|+++|.+=
T Consensus 72 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~~~~~Gvit 118 (125)
T cd04631 72 VRSIMTRNVITITPDDSIK-DAAELMLEKRVGGLPVVDDDGKLVGIVT 118 (125)
T ss_pred HHHHhcCCceEeCCCCcHH-HHHHHHHHcCCceEEEEcCCCcEEEEEE
Confidence 4455432223344443331 23344455545444444 4589999874
No 128
>PF04877 Hairpins: HrpZ; InterPro: IPR006961 HrpZ (harpin elicitor) from the plant pathogen Pseudomonas syringae binds to lipid bilayers and forms a cation-conducting pore in vivo. This pore-forming activity may allow nutrient release or delivery of virulence factors during bacterial colonisation of host plants []. The entry also represents hairpinN which is a virulence determinant which elicits lesion formation in Arabidopsis and tobacco and triggers systemic resistance in Arabidopsis [].
Probab=22.85 E-value=84 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=21.9
Q ss_pred hHhHHHHHHHhhhcCCCCcccchhHHHHhh
Q 048356 18 TVVVDEIVKMEKKIFPKHESLARSFDEELK 47 (82)
Q Consensus 18 ~~~l~~I~~IErk~FP~nes~~~~f~~EL~ 47 (82)
.+-|.+.+..+.+.||+++.+ +.-+||+
T Consensus 167 L~eIaqFMD~nPe~FgkPd~~--sW~~eLk 194 (308)
T PF04877_consen 167 LKEIAQFMDQNPEQFGKPDRK--SWADELK 194 (308)
T ss_pred HHHHHHHHhcCHhhcCCCCCc--hHHHHhh
Confidence 345667778899999999888 5778884
No 129
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=22.63 E-value=51 Score=22.04 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=13.0
Q ss_pred cceEEecCCCCcchH
Q 048356 5 GTVTELQRNSTNWTV 19 (82)
Q Consensus 5 ~~~~~l~~~~~~a~~ 19 (82)
-.|.||-|+++++++
T Consensus 47 k~IyELKPnNPr~ik 61 (89)
T PF15650_consen 47 KIIYELKPNNPRAIK 61 (89)
T ss_pred ceEEEecCCCHHHHH
Confidence 459999999998876
No 130
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=22.10 E-value=1.6e+02 Score=22.43 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred ccchhHHHHhhc--cCceEEEEEE-----------CCeEEEEEE
Q 048356 37 SLARSFDEELKK--KNSGLLYIHI-----------HGQVVGYVM 67 (82)
Q Consensus 37 s~~~~f~~EL~k--~n~~fl~a~~-----------~gkVvGYvm 67 (82)
.|+-.+|+|+++ .-...=|+.+ +|+|+||=.
T Consensus 107 ~Ysl~lF~emR~i~~vg~WPVglvg~~~vegP~c~~gkV~gw~~ 150 (223)
T cd00218 107 TYDLELFEEMRKIKRVGVWPVGLVGGLRVEGPVCENGKVVGWHT 150 (223)
T ss_pred cccHHHHHHHhccCeeeEEEeeeecCceeeccEeeCCeEeEEec
Confidence 477789999964 3333333332 788998865
No 131
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.89 E-value=24 Score=29.45 Aligned_cols=31 Identities=39% Similarity=0.501 Sum_probs=20.9
Q ss_pred HHHHh--hccCceEEEEEECCeEEEEEEEeccCCceeeeec
Q 048356 42 FDEEL--KKKNSGLLYIHIHGQVVGYVMYAWPTSLSASITK 80 (82)
Q Consensus 42 f~~EL--~k~n~~fl~a~~~gkVvGYvm~~~~t~~~~~i~k 80 (82)
+.||| -++...-|||| ++||-+ +|.+.|||.
T Consensus 263 vlEelEHA~~RgA~I~AE----~lGygl----s~Da~HiT~ 295 (440)
T KOG1394|consen 263 VLEELEHAKKRGAPIYAE----VLGYGL----SSDAYHITS 295 (440)
T ss_pred ehHhHHHHHHcCCceeHH----hhcCcc----cccccccCC
Confidence 34555 23345567776 899988 788889873
No 132
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.83 E-value=1.7e+02 Score=17.63 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=14.8
Q ss_pred HHHHhhccC-ceEEEEEECCeEEEEEE
Q 048356 42 FDEELKKKN-SGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 42 f~~EL~k~n-~~fl~a~~~gkVvGYvm 67 (82)
..+.+.+.+ ..+++...+|+++|++-
T Consensus 15 a~~~~~~~~~~~~~V~d~~~~~~Givt 41 (118)
T cd04617 15 AIVTLFLEDVGSLFVVDEDGDLVGVVS 41 (118)
T ss_pred HHHHHHHcCCCEEEEEcCCCCEEEEEE
Confidence 334554443 33444444689999886
No 133
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=21.80 E-value=1.8e+02 Score=16.81 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHHHHHhhhcCCCCcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 21 l~~I~~IErk~FP~nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
+.++++=...+++.++++. .....+.+ ....++...+|+++|.+-
T Consensus 59 ~~~~~~~~~~~v~~~~~l~-~~~~~~~~-~~~~~vv~~~~~~~Gvvt 103 (110)
T cd04609 59 VREVMGEPLPTVDPDAPIE-ELSELLDR-GNVAVVVDEGGKFVGIIT 103 (110)
T ss_pred HHHHhcCCCceeCCCCcHH-HHHHHHHh-CCceeEEecCCeEEEEEe
Confidence 4444432233455565552 23233333 333455555799999874
No 134
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=21.73 E-value=1.1e+02 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=14.8
Q ss_pred ccCceEEEEEECCeEEEEEEEe
Q 048356 48 KKNSGLLYIHIHGQVVGYVMYA 69 (82)
Q Consensus 48 k~n~~fl~a~~~gkVvGYvm~~ 69 (82)
|.+-.-|+-+.+|+++||=+.-
T Consensus 12 kgdV~rI~~~e~~~~vGyNif~ 33 (73)
T PF14794_consen 12 KGDVVRIFDEETGETVGYNIFN 33 (73)
T ss_dssp ETTEEEEEE--TTEEEEEEEET
T ss_pred eCCEEEEEecCCCcEEEEEEEc
Confidence 3356666666789999998854
No 135
>PRK05246 glutathione synthetase; Provisional
Probab=21.37 E-value=1.2e+02 Score=22.87 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=14.5
Q ss_pred CceEEEEEECCeEEEEEEEecc
Q 048356 50 NSGLLYIHIHGQVVGYVMYAWP 71 (82)
Q Consensus 50 n~~fl~a~~~gkVvGYvm~~~~ 71 (82)
+.++++ .+|+++||+|.+.+
T Consensus 208 D~Rv~v--v~g~vv~~a~~R~~ 227 (316)
T PRK05246 208 DKRILL--VDGEPVGYALARIP 227 (316)
T ss_pred CEEEEE--ECCEEhhheeEecC
Confidence 444444 39999999998854
No 136
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=21.23 E-value=1.9e+02 Score=21.65 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=26.4
Q ss_pred HHhhhcCCC---CcccchhHHHHhhccCceEEEEEECCeEEEEEE
Q 048356 26 KMEKKIFPK---HESLARSFDEELKKKNSGLLYIHIHGQVVGYVM 67 (82)
Q Consensus 26 ~IErk~FP~---nes~~~~f~~EL~k~n~~fl~a~~~gkVvGYvm 67 (82)
++=-+.||. +++. ..--.|++...++||. .+|++||-+-
T Consensus 134 ~vM~e~fP~Vs~~~~l--~vI~~LL~~~~AVlV~-e~G~~vGIIT 175 (187)
T COG3620 134 EVMGEPFPTVSPDESL--NVISQLLEEHPAVLVV-ENGKVVGIIT 175 (187)
T ss_pred HHhcCCCCcCCCCCCH--HHHHHHHhhCCeEEEE-eCCceEEEEe
Confidence 333467886 3333 3445667888889988 6999999764
No 137
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=21.02 E-value=2.1e+02 Score=18.91 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.0
Q ss_pred CceEEEEEECCeEEEEEEEeccCC
Q 048356 50 NSGLLYIHIHGQVVGYVMYAWPTS 73 (82)
Q Consensus 50 n~~fl~a~~~gkVvGYvm~~~~t~ 73 (82)
...+.+...+|+++|++.|+ ..|
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~-~~~ 36 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYY-DRG 36 (99)
T ss_pred CceEEEEecCCcEEEEEEEe-cCC
Confidence 55566666799999999998 666
No 138
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=20.92 E-value=2e+02 Score=21.46 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=16.7
Q ss_pred ccCceEEEEEECCeEEEEEEEeccC
Q 048356 48 KKNSGLLYIHIHGQVVGYVMYAWPT 72 (82)
Q Consensus 48 k~n~~fl~a~~~gkVvGYvm~~~~t 72 (82)
..+..|||++.+|+.+|-.. +.+.
T Consensus 122 ~~~R~YlV~~~~~~l~Gi~g-r~~~ 145 (208)
T PF07299_consen 122 GSNRKYLVYERDGKLVGIAG-RFSP 145 (208)
T ss_dssp CCTEEEEEEE-TS-EEEEEE-EE-S
T ss_pred CCCcEEEEEEECCEEEEEEE-ecCC
Confidence 34899999999999999765 5444
No 139
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=20.64 E-value=2.1e+02 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=15.4
Q ss_pred ccCceEEEEEECCeEEEEEEEec
Q 048356 48 KKNSGLLYIHIHGQVVGYVMYAW 70 (82)
Q Consensus 48 k~n~~fl~a~~~gkVvGYvm~~~ 70 (82)
+.+. |-+...+|..|||+...|
T Consensus 33 ~~~Q-~~l~~~~g~Pvaf~~WA~ 54 (133)
T PF02794_consen 33 KLGQ-YRLYSEDGRPVAFCSWAF 54 (133)
T ss_pred hhCc-EEEEEeCCeEEEEEEhhc
Confidence 3345 444448999999998664
Done!