BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048358
         (541 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SY6|A Chain A, Crystal Structure Of A Fimbrial Protein Bf1861
           [bacteroides Fragilis Nctc 9343] (Bf1861) From
           Bacteroides Fragilis Nctc 9343 At 1.90 A Resolution
 pdb|3SY6|B Chain B, Crystal Structure Of A Fimbrial Protein Bf1861
           [bacteroides Fragilis Nctc 9343] (Bf1861) From
           Bacteroides Fragilis Nctc 9343 At 1.90 A Resolution
          Length = 291

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 8   LSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASL 67
           L+ K    R    L   E   + KK + Q + +  + +NF +T+ +D+ ++ G    +++
Sbjct: 135 LNXKHAYARLRLTLTRGEKFDKTKKCNIQNITFKSNNANFYLTRSLDIASTAGATGGSAV 194

Query: 68  LFKQVKEPNV 77
               V  PNV
Sbjct: 195 AAGYVHNPNV 204


>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
           Ofhex1 E328a Complexed With Tmg-chitotriomycin
          Length = 572

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 180 DRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239
           D D  ++  L + + +  Q K  +    K+P   ++ WT+ ++ Y HI  Y    D   Q
Sbjct: 368 DLDKESFLKLWNYFQQKAQDKAYKAFGKKLP---LILWTSTLTNYKHIDDYLNKDDYIIQ 424

Query: 240 MQMVGIEP 247
           +   G++P
Sbjct: 425 VWTTGVDP 432


>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
           Ofhex1 V327g Complexed With Pugnac
          Length = 575

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 180 DRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239
           D D  ++  L + + +  Q K  +    K+P   ++ WT+ ++ Y HI  Y    D   Q
Sbjct: 371 DLDKESFLKLWNYFQQKAQDKAYKAFGKKLP---LILWTSTLTNYKHIDDYLNKDDYIIQ 427

Query: 240 MQMVGIEP 247
           +   G++P
Sbjct: 428 VWTTGVDP 435


>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
           Ofhex1 From Ostrinia Furnacalis
 pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
           Ofhex1 Complexed With Tmg-Chitotriomycin
 pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
           Ofhex1 Complexed With Pugnac
 pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
           Ofhex1 Complexed With Ngt
          Length = 572

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 180 DRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239
           D D  ++  L + + +  Q K  +    K+P   ++ WT+ ++ Y HI  Y    D   Q
Sbjct: 368 DLDKESFLKLWNYFQQKAQDKAYKAFGKKLP---LILWTSTLTNYKHIDDYLNKDDYIIQ 424

Query: 240 MQMVGIEP 247
           +   G++P
Sbjct: 425 VWTTGVDP 432


>pdb|4J0N|A Chain A, Crystal Structure Of A Manganese Dependent Isatin
           Hydrolase
 pdb|4J0N|B Chain B, Crystal Structure Of A Manganese Dependent Isatin
           Hydrolase
          Length = 263

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 25/125 (20%)

Query: 162 YGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMI 221
           + K    +E HK+ E  +D    AWN ++ G       + +   FD  P+     W   I
Sbjct: 41  FAKNTPKVEIHKISEYDSDGPFFAWNWMVLG-------EHSGTHFD-APH----HW---I 85

Query: 222 SGYTHIGSYAEALDVFRQMQMVGI---------EPDEISIVSVLPAC-AQLGSLELGEWI 271
           +G  +   + + LDV R +  V +         +PD +    ++ A  A+ G +  GEW+
Sbjct: 86  TGKDYSDGFTDTLDVQRLIAPVNVIDCSKESAADPDFLLTADLIKAWEAEHGEIGAGEWV 145

Query: 272 HMYCD 276
            M  D
Sbjct: 146 VMRTD 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,308,014
Number of Sequences: 62578
Number of extensions: 668051
Number of successful extensions: 1258
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 6
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)