Query 048358
Match_columns 541
No_of_seqs 593 out of 3838
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 08:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.6E-77 5.7E-82 631.7 61.7 525 1-532 174-771 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.1E-73 2.4E-78 590.1 57.9 487 10-532 119-608 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4E-67 8.6E-72 554.2 53.0 503 1-537 73-650 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-62 3.4E-67 509.2 54.6 515 1-533 392-957 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.3E-61 7.2E-66 499.4 55.1 469 12-486 368-881 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.4E-55 5.3E-60 453.8 40.3 445 75-537 85-553 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-31 6.1E-36 287.6 52.5 505 21-540 373-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-31 1.4E-35 284.8 51.6 502 26-540 344-865 (899)
9 PRK11447 cellulose synthase su 100.0 6E-24 1.3E-28 231.0 52.4 500 26-539 43-738 (1157)
10 PRK11447 cellulose synthase su 99.9 1.1E-22 2.3E-27 221.3 49.8 453 20-482 121-701 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.4E-23 5.3E-28 192.7 33.7 412 49-475 51-513 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 9.3E-24 2E-28 195.5 28.0 388 80-480 51-450 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.3E-21 2.9E-26 203.4 47.1 471 25-540 58-705 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.9E-21 1.3E-25 195.2 43.0 419 50-481 131-571 (615)
15 PRK09782 bacteriophage N4 rece 99.9 9.4E-20 2E-24 189.7 49.5 479 10-535 107-734 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-20 5.7E-25 190.5 40.7 419 80-539 130-569 (615)
17 PRK11788 tetratricopeptide rep 99.9 2.3E-20 4.9E-25 181.5 29.7 270 216-489 71-355 (389)
18 PRK15174 Vi polysaccharide exp 99.9 9.3E-19 2E-23 178.4 40.8 355 57-451 16-385 (656)
19 PRK15174 Vi polysaccharide exp 99.9 1.4E-19 3.1E-24 184.4 34.3 347 156-529 46-408 (656)
20 PRK10049 pgaA outer membrane p 99.9 1.6E-18 3.5E-23 180.5 42.5 400 43-482 12-457 (765)
21 PRK10049 pgaA outer membrane p 99.9 2.2E-18 4.9E-23 179.5 43.5 408 15-454 19-463 (765)
22 PRK11788 tetratricopeptide rep 99.9 7.9E-20 1.7E-24 177.7 30.3 284 86-378 44-346 (389)
23 PRK14574 hmsH outer membrane p 99.8 1.3E-16 2.8E-21 163.2 42.2 420 53-480 41-512 (822)
24 KOG2002 TPR-containing nuclear 99.8 6.1E-17 1.3E-21 158.5 36.7 428 43-481 267-745 (1018)
25 PRK14574 hmsH outer membrane p 99.8 5E-16 1.1E-20 158.9 45.1 418 25-455 48-521 (822)
26 KOG2002 TPR-containing nuclear 99.8 5.7E-17 1.2E-21 158.7 35.8 434 75-537 268-741 (1018)
27 KOG2003 TPR repeat-containing 99.8 1.5E-16 3.3E-21 142.9 27.0 410 45-467 200-709 (840)
28 KOG2076 RNA polymerase III tra 99.7 6.5E-15 1.4E-19 143.6 31.8 352 166-536 153-550 (895)
29 KOG1126 DNA-binding cell divis 99.7 2.6E-15 5.5E-20 141.9 22.7 276 228-533 333-612 (638)
30 KOG2076 RNA polymerase III tra 99.7 5.5E-13 1.2E-17 130.4 38.8 500 20-526 148-788 (895)
31 KOG0495 HAT repeat protein [RN 99.7 5.3E-12 1.1E-16 119.1 43.5 365 119-494 518-891 (913)
32 KOG4422 Uncharacterized conser 99.7 1.1E-13 2.3E-18 124.0 30.4 388 1-412 137-587 (625)
33 PF13429 TPR_15: Tetratricopep 99.7 9.8E-17 2.1E-21 147.7 11.4 254 220-477 14-273 (280)
34 KOG4422 Uncharacterized conser 99.7 3E-12 6.6E-17 114.8 38.6 69 416-485 520-594 (625)
35 KOG1155 Anaphase-promoting com 99.7 1.5E-13 3.3E-18 124.3 30.4 366 148-535 160-530 (559)
36 PRK10747 putative protoheme IX 99.7 5.2E-14 1.1E-18 135.5 28.0 248 260-538 129-387 (398)
37 PF13429 TPR_15: Tetratricopep 99.7 2.7E-16 5.9E-21 144.7 10.9 252 188-446 13-276 (280)
38 KOG0495 HAT repeat protein [RN 99.7 3.2E-11 6.9E-16 114.0 43.8 428 59-527 389-866 (913)
39 KOG0547 Translocase of outer m 99.7 7.3E-14 1.6E-18 127.1 25.2 214 297-539 339-564 (606)
40 KOG0547 Translocase of outer m 99.7 4.6E-13 9.9E-18 122.0 29.1 216 259-479 336-564 (606)
41 TIGR00540 hemY_coli hemY prote 99.6 1.1E-13 2.5E-18 134.0 26.4 286 225-538 95-396 (409)
42 KOG2003 TPR repeat-containing 99.6 1.3E-12 2.9E-17 117.9 30.6 395 79-481 200-689 (840)
43 KOG1126 DNA-binding cell divis 99.6 4.5E-14 9.8E-19 133.6 21.8 276 198-482 334-621 (638)
44 KOG1915 Cell cycle control pro 99.6 6.4E-12 1.4E-16 114.2 34.3 178 57-243 84-273 (677)
45 KOG1173 Anaphase-promoting com 99.6 6.9E-12 1.5E-16 116.6 34.5 437 43-524 46-535 (611)
46 KOG1155 Anaphase-promoting com 99.6 8.8E-12 1.9E-16 113.1 32.6 250 125-378 235-494 (559)
47 PRK10747 putative protoheme IX 99.6 2.9E-12 6.3E-17 123.5 32.0 245 225-479 129-388 (398)
48 KOG1915 Cell cycle control pro 99.6 5E-11 1.1E-15 108.5 36.9 399 76-486 72-505 (677)
49 TIGR00540 hemY_coli hemY prote 99.6 1.4E-11 3E-16 119.5 32.8 277 164-445 96-397 (409)
50 COG3071 HemY Uncharacterized e 99.5 2.8E-11 6.1E-16 108.2 27.3 275 227-533 97-382 (400)
51 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4E-15 103.0 30.1 289 90-446 97-389 (400)
52 COG2956 Predicted N-acetylgluc 99.5 4.9E-11 1.1E-15 103.4 24.1 215 89-310 47-275 (389)
53 TIGR02521 type_IV_pilW type IV 99.5 3E-11 6.5E-16 108.4 24.1 198 283-481 30-232 (234)
54 KOG4318 Bicoid mRNA stability 99.4 8.6E-10 1.9E-14 108.1 33.1 455 3-485 14-598 (1088)
55 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.5E-15 100.3 24.9 283 166-487 49-353 (389)
56 KOG2047 mRNA splicing factor [ 99.4 3.1E-08 6.6E-13 94.2 40.7 283 188-474 392-716 (835)
57 KOG2376 Signal recognition par 99.4 8.8E-09 1.9E-13 96.9 36.3 432 26-479 27-518 (652)
58 TIGR02521 type_IV_pilW type IV 99.4 5.3E-11 1.2E-15 106.8 21.1 194 314-536 30-227 (234)
59 KOG1173 Anaphase-promoting com 99.4 4.9E-09 1.1E-13 98.1 32.3 279 182-463 243-534 (611)
60 KOG1174 Anaphase-promoting com 99.4 6.8E-09 1.5E-13 93.3 31.8 273 181-458 230-511 (564)
61 KOG1129 TPR repeat-containing 99.4 4.6E-11 1E-15 103.7 17.5 227 251-482 225-459 (478)
62 KOG4162 Predicted calmodulin-b 99.4 8.9E-09 1.9E-13 99.9 34.4 417 42-481 319-783 (799)
63 KOG4340 Uncharacterized conser 99.4 3.4E-09 7.4E-14 91.1 27.5 386 80-480 13-442 (459)
64 PRK12370 invasion protein regu 99.4 5.3E-10 1.2E-14 112.7 26.8 262 213-482 255-536 (553)
65 KOG1174 Anaphase-promoting com 99.3 4E-08 8.7E-13 88.5 34.6 264 211-481 229-500 (564)
66 KOG1840 Kinesin light chain [C 99.3 4.3E-10 9.3E-15 108.0 23.2 231 250-480 200-478 (508)
67 KOG2047 mRNA splicing factor [ 99.3 7.5E-08 1.6E-12 91.6 35.3 434 63-537 92-611 (835)
68 KOG4162 Predicted calmodulin-b 99.3 2E-08 4.3E-13 97.6 32.0 365 148-539 319-781 (799)
69 KOG1156 N-terminal acetyltrans 99.3 2.3E-07 5.1E-12 88.5 38.1 448 16-478 10-508 (700)
70 KOG1129 TPR repeat-containing 99.3 1E-10 2.3E-15 101.5 14.7 233 217-454 226-465 (478)
71 KOG4318 Bicoid mRNA stability 99.3 1.3E-09 2.9E-14 106.8 23.8 245 100-365 13-286 (1088)
72 PRK12370 invasion protein regu 99.3 7.9E-10 1.7E-14 111.5 22.7 228 248-481 255-502 (553)
73 PRK11189 lipoprotein NlpI; Pro 99.3 2.5E-09 5.4E-14 98.7 23.4 189 285-481 65-265 (296)
74 KOG1840 Kinesin light chain [C 99.3 3.2E-10 6.9E-15 108.9 17.9 237 284-539 199-477 (508)
75 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 3.8E-16 78.9 6.4 50 212-261 1-50 (50)
76 KOG0548 Molecular co-chaperone 99.3 2.4E-08 5.2E-13 93.2 28.8 397 54-481 10-455 (539)
77 KOG1156 N-terminal acetyltrans 99.2 1.5E-07 3.2E-12 89.9 34.0 425 48-483 10-470 (700)
78 PF12569 NARP1: NMDA receptor- 99.2 1.5E-07 3.3E-12 91.9 35.4 411 51-477 9-516 (517)
79 PF13041 PPR_2: PPR repeat fam 99.2 3.1E-11 6.7E-16 77.8 6.7 50 313-362 1-50 (50)
80 COG3063 PilF Tfp pilus assembl 99.2 2.2E-09 4.8E-14 89.1 17.4 162 318-482 38-203 (250)
81 PRK11189 lipoprotein NlpI; Pro 99.2 1.8E-09 3.8E-14 99.7 17.9 216 299-540 41-264 (296)
82 KOG3785 Uncharacterized conser 99.2 8.2E-08 1.8E-12 84.8 26.7 406 56-485 32-494 (557)
83 KOG3785 Uncharacterized conser 99.2 5.4E-07 1.2E-11 79.8 31.6 398 54-487 65-520 (557)
84 COG3063 PilF Tfp pilus assembl 99.1 1.6E-08 3.5E-13 84.1 19.5 194 286-480 37-235 (250)
85 KOG1125 TPR repeat-containing 99.1 1.2E-08 2.5E-13 96.0 19.8 249 259-529 295-559 (579)
86 KOG0548 Molecular co-chaperone 99.1 1.2E-07 2.5E-12 88.7 26.1 399 85-538 10-452 (539)
87 KOG2376 Signal recognition par 99.1 6.6E-07 1.4E-11 84.7 29.8 341 126-479 21-403 (652)
88 PRK04841 transcriptional regul 99.1 8.7E-06 1.9E-10 88.6 43.8 363 157-539 346-758 (903)
89 PF04733 Coatomer_E: Coatomer 99.1 1.5E-08 3.4E-13 92.0 18.7 226 216-452 37-270 (290)
90 PF12569 NARP1: NMDA receptor- 99.1 3.2E-07 6.9E-12 89.7 28.7 281 194-480 15-333 (517)
91 PF04733 Coatomer_E: Coatomer 99.1 6.1E-09 1.3E-13 94.6 15.6 245 222-481 9-265 (290)
92 KOG3616 Selective LIM binding 99.0 5.5E-07 1.2E-11 87.1 28.4 35 506-540 989-1023(1636)
93 KOG0624 dsRNA-activated protei 99.0 1.2E-06 2.6E-11 77.3 25.8 291 158-456 44-379 (504)
94 KOG0624 dsRNA-activated protei 99.0 7.1E-07 1.5E-11 78.7 24.3 291 187-483 42-372 (504)
95 KOG0985 Vesicle coat protein c 99.0 1.3E-05 2.9E-10 80.6 35.7 358 75-479 982-1368(1666)
96 KOG3617 WD40 and TPR repeat-co 99.0 7.5E-06 1.6E-10 80.5 33.2 180 44-241 755-994 (1416)
97 KOG1127 TPR repeat-containing 99.0 1.7E-06 3.7E-11 86.7 28.9 420 46-478 492-993 (1238)
98 PRK04841 transcriptional regul 99.0 8.4E-06 1.8E-10 88.7 37.6 323 160-482 382-761 (903)
99 cd05804 StaR_like StaR_like; a 99.0 2.9E-06 6.2E-11 81.5 30.3 257 222-482 51-337 (355)
100 cd05804 StaR_like StaR_like; a 98.9 1.5E-06 3.3E-11 83.4 28.0 307 214-539 6-334 (355)
101 KOG0985 Vesicle coat protein c 98.9 4.9E-05 1.1E-09 76.7 37.9 379 13-437 951-1373(1666)
102 KOG3616 Selective LIM binding 98.9 4.8E-06 1.1E-10 80.8 30.1 261 191-482 740-1025(1636)
103 KOG3617 WD40 and TPR repeat-co 98.9 1E-06 2.2E-11 86.4 25.5 403 75-537 724-1170(1416)
104 PRK15359 type III secretion sy 98.9 9.4E-08 2E-12 77.6 15.5 124 371-525 14-139 (144)
105 PRK10370 formate-dependent nit 98.9 2.4E-07 5.2E-12 79.5 18.2 147 322-482 23-174 (198)
106 KOG4340 Uncharacterized conser 98.9 7.8E-07 1.7E-11 76.9 20.5 303 155-477 13-335 (459)
107 PRK15179 Vi polysaccharide bio 98.9 6.8E-08 1.5E-12 98.0 16.6 131 348-480 84-216 (694)
108 KOG1127 TPR repeat-containing 98.9 6.5E-07 1.4E-11 89.6 22.1 435 92-539 473-994 (1238)
109 TIGR03302 OM_YfiO outer membra 98.9 6.1E-08 1.3E-12 86.9 14.0 183 314-537 32-228 (235)
110 TIGR03302 OM_YfiO outer membra 98.8 3.5E-07 7.5E-12 82.0 18.5 182 282-481 31-232 (235)
111 COG5010 TadD Flp pilus assembl 98.8 6.1E-07 1.3E-11 76.6 18.1 156 354-537 70-227 (257)
112 PLN02789 farnesyltranstransfer 98.8 5.7E-07 1.2E-11 82.9 18.3 204 318-524 40-267 (320)
113 KOG1125 TPR repeat-containing 98.8 5.3E-08 1.2E-12 91.7 11.5 217 291-538 292-524 (579)
114 KOG1070 rRNA processing protei 98.8 8.7E-07 1.9E-11 91.7 20.5 201 281-485 1455-1667(1710)
115 PLN02789 farnesyltranstransfer 98.8 6.5E-06 1.4E-10 76.0 24.2 191 286-479 73-300 (320)
116 KOG1128 Uncharacterized conser 98.7 2.1E-06 4.6E-11 83.4 19.9 212 253-482 402-617 (777)
117 PRK10370 formate-dependent nit 98.7 2.2E-06 4.7E-11 73.6 18.2 156 290-456 22-182 (198)
118 PRK15359 type III secretion sy 98.7 4.4E-07 9.6E-12 73.6 12.8 123 336-464 14-138 (144)
119 KOG3081 Vesicle coat complex C 98.7 4.8E-05 1E-09 65.3 23.8 174 272-452 96-276 (299)
120 KOG3081 Vesicle coat complex C 98.6 1.4E-05 3E-10 68.4 20.4 243 221-479 15-269 (299)
121 COG5010 TadD Flp pilus assembl 98.6 6.4E-06 1.4E-10 70.5 18.1 156 319-477 70-227 (257)
122 KOG1128 Uncharacterized conser 98.6 6.4E-06 1.4E-10 80.2 19.8 205 191-412 406-613 (777)
123 PRK15363 pathogenicity island 98.6 1.9E-06 4.2E-11 68.6 13.0 97 385-481 34-132 (157)
124 PF12854 PPR_1: PPR repeat 98.6 7.9E-08 1.7E-12 55.4 3.7 34 40-73 1-34 (34)
125 PRK15179 Vi polysaccharide bio 98.6 7.7E-06 1.7E-10 83.3 20.3 160 314-482 85-246 (694)
126 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 54.4 4.1 33 147-179 2-34 (34)
127 KOG1070 rRNA processing protei 98.5 3.9E-05 8.4E-10 80.1 24.0 230 248-478 1457-1697(1710)
128 KOG3060 Uncharacterized conser 98.5 2.4E-05 5.3E-10 66.5 18.6 180 297-480 25-219 (289)
129 TIGR02552 LcrH_SycD type III s 98.5 4.2E-06 9E-11 67.6 14.0 97 385-481 16-114 (135)
130 COG4783 Putative Zn-dependent 98.5 7.5E-05 1.6E-09 69.8 23.0 120 359-480 315-436 (484)
131 KOG3060 Uncharacterized conser 98.5 4.4E-05 9.6E-10 64.9 18.6 199 261-462 24-235 (289)
132 KOG1914 mRNA cleavage and poly 98.4 0.0017 3.6E-08 61.7 32.4 394 75-480 18-500 (656)
133 PF07079 DUF1347: Protein of u 98.4 0.0018 3.9E-08 60.2 30.6 193 284-480 298-523 (549)
134 PRK14720 transcript cleavage f 98.4 0.00022 4.8E-09 73.8 25.5 151 215-397 117-268 (906)
135 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.9E-10 64.6 13.8 116 337-455 5-122 (135)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1E-05 2.2E-10 76.3 14.4 124 353-481 172-297 (395)
137 PRK14720 transcript cleavage f 98.4 0.00019 4.1E-09 74.3 24.2 106 224-344 93-198 (906)
138 PRK15363 pathogenicity island 98.4 1.6E-06 3.4E-11 69.1 7.4 108 407-540 24-131 (157)
139 KOG2053 Mitochondrial inherita 98.4 0.0043 9.3E-08 62.7 33.5 408 57-485 20-506 (932)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.1E-10 73.8 15.8 128 286-416 171-298 (395)
141 KOG1914 mRNA cleavage and poly 98.3 0.0035 7.7E-08 59.6 36.8 423 43-476 17-534 (656)
142 KOG0553 TPR repeat-containing 98.3 7.1E-06 1.5E-10 71.7 10.2 98 359-458 90-189 (304)
143 PLN03088 SGT1, suppressor of 98.3 2E-05 4.3E-10 74.7 13.9 84 396-479 12-97 (356)
144 PF14559 TPR_19: Tetratricopep 98.2 3.9E-06 8.5E-11 58.2 6.4 53 429-481 2-54 (68)
145 PF09976 TPR_21: Tetratricopep 98.2 7.6E-05 1.6E-09 60.8 14.5 114 363-477 24-143 (145)
146 COG4783 Putative Zn-dependent 98.2 0.00039 8.5E-09 65.2 20.4 143 320-482 311-455 (484)
147 PF12895 Apc3: Anaphase-promot 98.1 3.8E-06 8.2E-11 61.1 5.0 78 399-477 2-83 (84)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00018 3.9E-09 58.7 15.2 124 318-444 15-144 (145)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.4E-05 9.6E-10 59.9 11.2 93 389-481 5-105 (119)
150 cd00189 TPR Tetratricopeptide 98.1 4E-05 8.6E-10 57.2 10.4 93 389-481 3-97 (100)
151 TIGR00756 PPR pentatricopeptid 98.1 7.5E-06 1.6E-10 48.0 4.6 34 215-248 1-34 (35)
152 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.6E-05 1.9E-09 58.3 12.0 105 352-456 4-114 (119)
153 PRK02603 photosystem I assembl 98.1 0.00012 2.5E-09 61.8 13.3 82 386-467 35-121 (172)
154 PF13414 TPR_11: TPR repeat; P 98.1 1.2E-05 2.5E-10 56.0 6.1 65 417-481 2-67 (69)
155 PF13812 PPR_3: Pentatricopept 98.1 8.3E-06 1.8E-10 47.4 4.4 33 215-247 2-34 (34)
156 KOG0553 TPR repeat-containing 98.0 5.3E-05 1.2E-09 66.4 10.7 103 322-427 88-191 (304)
157 KOG2053 Mitochondrial inherita 98.0 0.022 4.7E-07 57.9 40.8 181 56-244 53-256 (932)
158 PF13432 TPR_16: Tetratricopep 98.0 1.9E-05 4.1E-10 54.2 5.9 58 424-481 3-60 (65)
159 COG4235 Cytochrome c biogenesi 98.0 0.00012 2.5E-09 64.7 12.0 107 383-489 153-264 (287)
160 cd00189 TPR Tetratricopeptide 98.0 2.3E-05 4.9E-10 58.6 6.8 95 420-540 2-96 (100)
161 PF05843 Suf: Suppressor of fo 98.0 0.00042 9.1E-09 63.3 15.7 133 316-451 2-140 (280)
162 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.5E-10 46.5 4.3 34 78-116 1-34 (35)
163 PLN03088 SGT1, suppressor of 98.0 0.00017 3.6E-09 68.5 13.4 106 358-465 10-117 (356)
164 CHL00033 ycf3 photosystem I as 97.9 0.00014 3.1E-09 61.0 11.4 113 366-478 15-139 (168)
165 PRK10153 DNA-binding transcrip 97.9 0.0007 1.5E-08 67.2 17.4 139 313-452 335-487 (517)
166 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.2E-10 45.4 4.1 31 78-108 2-32 (34)
167 KOG0550 Molecular chaperone (D 97.9 0.00092 2E-08 61.3 15.3 154 323-482 177-351 (486)
168 PRK10803 tol-pal system protei 97.8 5.4E-05 1.2E-09 67.7 7.4 95 387-481 144-246 (263)
169 PF12895 Apc3: Anaphase-promot 97.8 7.6E-05 1.6E-09 54.2 6.7 80 328-410 2-82 (84)
170 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.03 6.4E-07 52.4 30.1 402 28-451 26-535 (660)
171 PRK15331 chaperone protein Sic 97.8 0.00065 1.4E-08 54.7 12.2 90 391-480 42-133 (165)
172 PRK02603 photosystem I assembl 97.7 0.00098 2.1E-08 56.2 13.4 130 314-466 34-165 (172)
173 PF13371 TPR_9: Tetratricopept 97.7 0.00013 2.7E-09 51.4 6.6 57 426-482 3-59 (73)
174 PF13432 TPR_16: Tetratricopep 97.7 0.00012 2.7E-09 50.0 6.1 61 392-452 3-65 (65)
175 PF14938 SNAP: Soluble NSF att 97.7 0.025 5.4E-07 52.0 23.0 123 290-412 120-263 (282)
176 PF01535 PPR: PPR repeat; Int 97.7 6.1E-05 1.3E-09 42.5 3.5 30 78-107 1-30 (31)
177 PF01535 PPR: PPR repeat; Int 97.7 6.7E-05 1.5E-09 42.3 3.7 31 215-245 1-31 (31)
178 PF14938 SNAP: Soluble NSF att 97.7 0.011 2.3E-07 54.4 19.8 156 155-321 97-274 (282)
179 COG4700 Uncharacterized protei 97.6 0.012 2.6E-07 48.0 16.6 132 346-479 85-220 (251)
180 PF14559 TPR_19: Tetratricopep 97.5 0.00011 2.4E-09 50.8 4.0 60 362-423 3-63 (68)
181 KOG1130 Predicted G-alpha GTPa 97.5 0.0016 3.4E-08 59.7 11.9 131 351-481 196-344 (639)
182 PRK10866 outer membrane biogen 97.5 0.019 4.2E-07 51.1 18.9 60 82-148 37-100 (243)
183 CHL00033 ycf3 photosystem I as 97.5 0.0025 5.4E-08 53.5 12.6 62 317-378 37-100 (168)
184 PF05843 Suf: Suppressor of fo 97.5 0.0014 3E-08 60.0 11.8 129 351-481 2-136 (280)
185 PRK10153 DNA-binding transcrip 97.5 0.0057 1.2E-07 60.8 16.8 138 344-484 331-485 (517)
186 PF10037 MRP-S27: Mitochondria 97.5 0.0011 2.3E-08 63.1 11.1 117 43-164 63-185 (429)
187 PF04840 Vps16_C: Vps16, C-ter 97.5 0.082 1.8E-06 49.0 25.3 111 351-478 178-288 (319)
188 KOG1538 Uncharacterized conser 97.5 0.032 6.9E-07 54.5 20.4 104 44-177 554-657 (1081)
189 PF13414 TPR_11: TPR repeat; P 97.5 0.00026 5.5E-09 49.1 5.1 65 385-449 2-69 (69)
190 PRK10866 outer membrane biogen 97.5 0.022 4.8E-07 50.8 18.4 174 289-479 37-239 (243)
191 PF08579 RPM2: Mitochondrial r 97.4 0.0027 5.9E-08 47.1 10.1 81 216-296 27-116 (120)
192 PF10037 MRP-S27: Mitochondria 97.4 0.0021 4.5E-08 61.3 12.1 118 8-130 60-186 (429)
193 PF12688 TPR_5: Tetratrico pep 97.4 0.0028 6.1E-08 48.9 10.7 85 393-477 8-100 (120)
194 PF13431 TPR_17: Tetratricopep 97.4 0.00011 2.5E-09 42.1 2.3 32 441-472 2-33 (34)
195 PRK10803 tol-pal system protei 97.4 0.0015 3.2E-08 58.7 10.3 101 351-453 144-252 (263)
196 KOG0543 FKBP-type peptidyl-pro 97.4 0.00076 1.6E-08 62.0 8.2 88 418-531 257-344 (397)
197 KOG2114 Vacuolar assembly/sort 97.4 0.1 2.2E-06 52.8 23.0 180 46-241 334-517 (933)
198 COG4235 Cytochrome c biogenesi 97.4 0.013 2.9E-07 52.0 15.4 118 333-453 140-262 (287)
199 KOG0550 Molecular chaperone (D 97.4 0.092 2E-06 48.7 20.9 154 222-379 177-350 (486)
200 KOG2796 Uncharacterized conser 97.3 0.017 3.8E-07 49.9 15.1 138 215-354 178-323 (366)
201 COG4700 Uncharacterized protei 97.3 0.037 7.9E-07 45.3 15.8 133 313-445 87-220 (251)
202 COG1729 Uncharacterized protei 97.3 0.0011 2.4E-08 57.9 8.0 89 429-540 152-243 (262)
203 PF04840 Vps16_C: Vps16, C-ter 97.3 0.15 3.1E-06 47.4 31.5 108 288-412 181-288 (319)
204 PF12688 TPR_5: Tetratrico pep 97.3 0.012 2.5E-07 45.6 12.6 93 219-311 6-102 (120)
205 PF08579 RPM2: Mitochondrial r 97.3 0.005 1.1E-07 45.8 9.7 78 320-398 30-116 (120)
206 KOG2280 Vacuolar assembly/sort 97.2 0.29 6.2E-06 49.2 28.4 306 157-478 442-796 (829)
207 PF13371 TPR_9: Tetratricopept 97.2 0.0014 3.1E-08 45.9 6.3 64 394-457 3-68 (73)
208 PF13428 TPR_14: Tetratricopep 97.2 0.00073 1.6E-08 41.7 4.1 42 419-460 2-43 (44)
209 PF13525 YfiO: Outer membrane 97.1 0.014 3.1E-07 50.5 13.1 60 321-380 11-72 (203)
210 COG3898 Uncharacterized membra 97.1 0.23 4.9E-06 45.9 27.8 245 227-485 133-396 (531)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0027 5.9E-08 59.9 8.9 98 383-483 72-176 (453)
212 KOG1538 Uncharacterized conser 97.1 0.023 4.9E-07 55.5 14.6 81 158-243 753-846 (1081)
213 COG4105 ComL DNA uptake lipopr 97.0 0.073 1.6E-06 46.4 16.1 76 321-397 40-117 (254)
214 PF13281 DUF4071: Domain of un 97.0 0.11 2.4E-06 48.7 18.5 161 288-451 145-338 (374)
215 KOG1258 mRNA processing protei 97.0 0.41 9E-06 47.0 29.9 403 45-466 44-489 (577)
216 PF09205 DUF1955: Domain of un 97.0 0.031 6.8E-07 42.8 11.8 139 327-484 14-152 (161)
217 KOG0543 FKBP-type peptidyl-pro 97.0 0.011 2.3E-07 54.7 11.3 96 386-481 257-355 (397)
218 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.2E-08 46.6 4.8 62 419-480 6-74 (78)
219 PF06239 ECSIT: Evolutionarily 97.0 0.0046 1E-07 52.1 8.0 97 66-167 34-153 (228)
220 PF13525 YfiO: Outer membrane 96.9 0.12 2.5E-06 44.9 17.1 166 289-473 10-199 (203)
221 KOG2796 Uncharacterized conser 96.9 0.096 2.1E-06 45.5 15.5 135 317-451 179-319 (366)
222 KOG1130 Predicted G-alpha GTPa 96.9 0.0042 9E-08 57.1 7.9 126 251-376 197-341 (639)
223 PRK15331 chaperone protein Sic 96.9 0.002 4.2E-08 52.0 5.2 91 423-539 42-132 (165)
224 PF13428 TPR_14: Tetratricopep 96.9 0.0027 5.9E-08 39.1 4.8 43 452-520 1-43 (44)
225 PF06239 ECSIT: Evolutionarily 96.8 0.012 2.7E-07 49.6 9.6 89 211-299 44-153 (228)
226 KOG2041 WD40 repeat protein [G 96.7 0.78 1.7E-05 45.8 26.0 106 119-239 798-903 (1189)
227 PF12921 ATP13: Mitochondrial 96.6 0.03 6.5E-07 43.8 10.1 52 345-396 47-98 (126)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.63 1.4E-05 44.0 28.5 406 65-480 28-530 (660)
229 PF13512 TPR_18: Tetratricopep 96.6 0.067 1.4E-06 42.3 11.8 74 393-466 17-98 (142)
230 PF13424 TPR_12: Tetratricopep 96.6 0.0047 1E-07 43.9 4.8 60 387-446 6-74 (78)
231 PF03704 BTAD: Bacterial trans 96.6 0.013 2.8E-07 47.8 8.0 62 419-480 63-124 (146)
232 COG3898 Uncharacterized membra 96.5 0.69 1.5E-05 42.9 25.9 272 131-412 98-389 (531)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.02 4.4E-07 54.2 9.2 63 347-412 72-138 (453)
234 COG3118 Thioredoxin domain-con 96.4 0.3 6.5E-06 43.6 15.7 120 359-481 143-265 (304)
235 KOG2041 WD40 repeat protein [G 96.4 1.2 2.6E-05 44.6 29.1 216 61-314 678-908 (1189)
236 KOG1585 Protein required for f 96.4 0.32 7E-06 41.9 15.1 114 362-476 122-251 (308)
237 PF13512 TPR_18: Tetratricopep 96.3 0.039 8.5E-07 43.6 8.9 81 424-527 16-99 (142)
238 KOG2280 Vacuolar assembly/sort 96.3 1.5 3.2E-05 44.4 26.2 105 320-441 689-793 (829)
239 COG1729 Uncharacterized protei 96.3 0.038 8.3E-07 48.6 9.3 96 353-451 145-248 (262)
240 KOG4555 TPR repeat-containing 96.2 0.013 2.8E-07 44.7 5.5 89 394-482 51-145 (175)
241 PF03704 BTAD: Bacterial trans 96.1 0.059 1.3E-06 43.9 9.5 70 318-388 65-138 (146)
242 COG0457 NrfG FOG: TPR repeat [ 96.0 1.1 2.3E-05 39.6 27.3 195 285-481 60-265 (291)
243 COG3118 Thioredoxin domain-con 95.9 0.93 2E-05 40.6 16.1 171 302-474 121-294 (304)
244 PF13431 TPR_17: Tetratricopep 95.7 0.0029 6.2E-08 36.3 0.2 30 504-533 5-34 (34)
245 PF13281 DUF4071: Domain of un 95.7 0.41 8.9E-06 45.0 14.0 174 47-243 142-334 (374)
246 PF10300 DUF3808: Protein of u 95.7 0.83 1.8E-05 45.3 17.1 160 319-481 192-376 (468)
247 PF12921 ATP13: Mitochondrial 95.6 0.16 3.5E-06 39.7 9.6 47 381-427 47-97 (126)
248 COG4785 NlpI Lipoprotein NlpI, 95.6 1.1 2.3E-05 38.1 14.5 162 315-483 99-268 (297)
249 PRK11906 transcriptional regul 95.6 0.28 6.1E-06 46.9 12.7 64 417-480 337-400 (458)
250 KOG1941 Acetylcholine receptor 95.5 0.2 4.3E-06 45.7 10.8 122 356-477 128-271 (518)
251 COG0457 NrfG FOG: TPR repeat [ 95.5 1.6 3.4E-05 38.4 26.1 221 228-450 37-268 (291)
252 PRK11619 lytic murein transgly 95.5 3.7 8.1E-05 42.5 33.1 115 364-478 255-372 (644)
253 PRK11906 transcriptional regul 95.5 0.91 2E-05 43.6 15.5 144 331-477 274-432 (458)
254 KOG4555 TPR repeat-containing 95.4 0.21 4.6E-06 38.3 9.0 93 358-452 51-149 (175)
255 KOG2610 Uncharacterized conser 95.3 0.71 1.5E-05 41.9 13.4 153 297-452 116-283 (491)
256 smart00299 CLH Clathrin heavy 95.3 1.2 2.7E-05 35.8 15.0 126 318-463 10-136 (140)
257 PF10300 DUF3808: Protein of u 95.3 0.4 8.6E-06 47.5 13.2 145 335-483 177-336 (468)
258 PF07719 TPR_2: Tetratricopept 95.2 0.06 1.3E-06 30.6 4.6 32 420-451 3-34 (34)
259 PF04053 Coatomer_WDAD: Coatom 95.1 1.3 2.8E-05 43.3 16.0 160 223-414 270-430 (443)
260 PF00515 TPR_1: Tetratricopept 95.1 0.045 9.8E-07 31.2 3.9 32 419-450 2-33 (34)
261 KOG4234 TPR repeat-containing 95.1 0.096 2.1E-06 43.5 6.8 102 358-461 103-211 (271)
262 PF04053 Coatomer_WDAD: Coatom 95.1 1.7 3.6E-05 42.6 16.5 156 127-308 271-426 (443)
263 smart00299 CLH Clathrin heavy 95.0 1.5 3.2E-05 35.3 14.6 43 81-129 11-53 (140)
264 KOG1941 Acetylcholine receptor 94.8 1.2 2.6E-05 40.9 13.5 162 286-447 85-275 (518)
265 COG4105 ComL DNA uptake lipopr 94.7 2.8 6E-05 36.9 17.0 172 290-481 40-233 (254)
266 KOG2610 Uncharacterized conser 94.7 0.4 8.8E-06 43.4 10.1 153 326-481 114-276 (491)
267 PF08631 SPO22: Meiosis protei 94.6 3.5 7.7E-05 37.7 23.4 16 428-443 256-271 (278)
268 PF04184 ST7: ST7 protein; In 94.6 3.3 7.1E-05 40.2 16.4 101 350-450 259-378 (539)
269 KOG1585 Protein required for f 94.6 2.4 5.3E-05 36.8 14.0 22 218-239 95-116 (308)
270 PRK09687 putative lyase; Provi 94.5 3.8 8.2E-05 37.5 27.1 47 211-259 65-115 (280)
271 KOG3941 Intermediate in Toll s 94.5 0.28 6E-06 43.2 8.4 110 65-179 53-186 (406)
272 PF02259 FAT: FAT domain; Int 94.4 5 0.00011 38.3 20.6 151 313-465 144-305 (352)
273 PF13176 TPR_7: Tetratricopept 94.3 0.1 2.2E-06 30.3 3.9 26 454-479 1-26 (36)
274 PF09205 DUF1955: Domain of un 94.1 2.2 4.8E-05 33.1 14.0 61 318-379 89-149 (161)
275 PF07079 DUF1347: Protein of u 93.8 6.5 0.00014 37.6 33.2 357 56-423 89-530 (549)
276 KOG4648 Uncharacterized conser 93.6 0.29 6.3E-06 44.3 7.2 96 357-454 104-201 (536)
277 COG4649 Uncharacterized protei 93.6 2.7 5.9E-05 34.4 11.8 121 326-446 69-195 (221)
278 PF09613 HrpB1_HrpK: Bacterial 93.4 1.6 3.4E-05 35.5 10.3 71 397-467 21-93 (160)
279 KOG3941 Intermediate in Toll s 93.4 0.83 1.8E-05 40.4 9.3 99 212-310 65-185 (406)
280 PF07035 Mic1: Colon cancer-as 93.3 3.8 8.3E-05 33.8 12.7 127 143-277 20-148 (167)
281 PF07035 Mic1: Colon cancer-as 93.2 4.1 8.9E-05 33.6 13.0 133 98-243 15-149 (167)
282 PF13170 DUF4003: Protein of u 93.2 2.8 6E-05 38.6 13.1 151 9-165 54-230 (297)
283 PF10345 Cohesin_load: Cohesin 92.9 13 0.00029 38.6 27.0 127 50-179 104-252 (608)
284 PF00637 Clathrin: Region in C 92.9 0.28 6E-06 39.7 5.7 86 122-210 12-97 (143)
285 KOG1920 IkappaB kinase complex 92.8 11 0.00024 40.7 17.9 144 286-445 910-1053(1265)
286 PF04097 Nic96: Nup93/Nic96; 92.8 4.9 0.00011 41.6 15.6 48 76-130 111-158 (613)
287 KOG0890 Protein kinase of the 92.7 25 0.00055 41.3 25.3 315 157-482 1388-1732(2382)
288 PF13181 TPR_8: Tetratricopept 92.7 0.23 5E-06 28.1 3.7 30 420-449 3-32 (34)
289 PF13176 TPR_7: Tetratricopept 92.7 0.21 4.5E-06 29.0 3.5 27 420-446 1-27 (36)
290 COG3629 DnrI DNA-binding trans 92.3 1.5 3.3E-05 39.5 9.9 75 318-393 156-234 (280)
291 PF09613 HrpB1_HrpK: Bacterial 92.3 1.3 2.8E-05 36.0 8.5 95 351-448 8-107 (160)
292 KOG0890 Protein kinase of the 92.3 29 0.00062 40.9 25.7 63 385-448 1669-1732(2382)
293 KOG4234 TPR repeat-containing 92.2 3 6.4E-05 35.1 10.5 87 323-412 103-194 (271)
294 KOG1586 Protein required for f 92.2 7.2 0.00016 33.8 16.4 23 432-454 209-231 (288)
295 KOG4648 Uncharacterized conser 92.1 0.53 1.1E-05 42.8 6.7 95 321-418 103-198 (536)
296 COG3629 DnrI DNA-binding trans 92.1 0.8 1.7E-05 41.2 7.9 59 421-479 156-214 (280)
297 PF10602 RPN7: 26S proteasome 92.1 4.3 9.4E-05 34.1 12.0 60 318-377 39-100 (177)
298 TIGR02561 HrpB1_HrpK type III 92.0 1.2 2.7E-05 35.4 7.8 68 398-467 22-93 (153)
299 PRK15180 Vi polysaccharide bio 91.7 2.6 5.7E-05 40.3 11.0 89 395-483 332-422 (831)
300 PRK09687 putative lyase; Provi 91.6 11 0.00023 34.6 26.7 220 43-276 34-261 (280)
301 PF07719 TPR_2: Tetratricopept 91.5 0.36 7.8E-06 27.3 3.6 29 453-481 2-30 (34)
302 KOG2114 Vacuolar assembly/sort 91.2 21 0.00045 37.2 26.2 153 44-212 362-519 (933)
303 PF00515 TPR_1: Tetratricopept 90.6 0.51 1.1E-05 26.7 3.6 30 453-482 2-31 (34)
304 PF07721 TPR_4: Tetratricopept 90.3 0.5 1.1E-05 24.9 3.0 24 453-476 2-25 (26)
305 PF02259 FAT: FAT domain; Int 90.1 18 0.00038 34.5 22.4 53 221-277 5-57 (352)
306 PF13170 DUF4003: Protein of u 90.1 11 0.00024 34.7 13.5 50 230-279 78-133 (297)
307 PF10602 RPN7: 26S proteasome 89.5 6.2 0.00013 33.2 10.6 94 285-378 37-141 (177)
308 COG4785 NlpI Lipoprotein NlpI, 89.4 13 0.00028 31.9 18.2 178 262-449 78-268 (297)
309 COG2976 Uncharacterized protei 89.3 12 0.00026 31.5 13.8 92 356-450 95-191 (207)
310 PF13174 TPR_6: Tetratricopept 89.2 0.76 1.7E-05 25.6 3.6 24 456-479 4-27 (33)
311 COG2976 Uncharacterized protei 89.0 13 0.00028 31.4 12.4 91 391-482 94-189 (207)
312 TIGR02508 type_III_yscG type I 88.8 7.6 0.00017 28.5 9.1 58 192-252 48-105 (115)
313 COG1747 Uncharacterized N-term 88.7 25 0.00055 34.4 23.2 175 283-464 65-251 (711)
314 PF13181 TPR_8: Tetratricopept 88.7 1.1 2.3E-05 25.3 3.9 29 453-481 2-30 (34)
315 PF13374 TPR_10: Tetratricopep 88.6 0.95 2.1E-05 26.9 3.9 28 453-480 3-30 (42)
316 PF02284 COX5A: Cytochrome c o 88.5 4.5 9.7E-05 29.8 7.6 63 331-395 26-88 (108)
317 PF13174 TPR_6: Tetratricopept 88.4 0.71 1.5E-05 25.7 3.0 25 421-445 3-27 (33)
318 KOG4570 Uncharacterized conser 88.3 2.4 5.2E-05 38.3 7.4 106 35-147 53-165 (418)
319 KOG1258 mRNA processing protei 88.1 30 0.00066 34.6 33.3 393 66-481 32-470 (577)
320 COG4649 Uncharacterized protei 88.1 14 0.0003 30.5 14.3 54 326-379 143-196 (221)
321 PF13374 TPR_10: Tetratricopep 87.9 1.3 2.8E-05 26.4 4.2 28 419-446 3-30 (42)
322 PF08631 SPO22: Meiosis protei 87.7 22 0.00048 32.6 24.5 158 317-478 86-272 (278)
323 TIGR02561 HrpB1_HrpK type III 87.7 3.5 7.7E-05 32.9 7.2 109 351-479 8-120 (153)
324 KOG4642 Chaperone-dependent E3 87.5 2 4.4E-05 37.1 6.3 84 360-446 20-106 (284)
325 PF14853 Fis1_TPR_C: Fis1 C-te 87.5 3.7 8E-05 26.3 6.1 48 454-527 3-50 (53)
326 KOG4642 Chaperone-dependent E3 87.5 1 2.2E-05 38.9 4.5 87 395-481 19-107 (284)
327 PF14853 Fis1_TPR_C: Fis1 C-te 87.4 1.7 3.8E-05 27.8 4.5 34 423-456 6-39 (53)
328 KOG2066 Vacuolar assembly/sort 87.3 40 0.00086 35.0 25.3 144 152-315 392-536 (846)
329 KOG0276 Vesicle coat complex C 87.2 8.3 0.00018 38.4 10.8 56 285-345 667-722 (794)
330 KOG2066 Vacuolar assembly/sort 87.0 41 0.00089 34.9 26.3 100 53-164 363-467 (846)
331 KOG1920 IkappaB kinase complex 87.0 52 0.0011 36.0 22.7 111 185-311 941-1053(1265)
332 PF00637 Clathrin: Region in C 86.6 0.91 2E-05 36.7 3.8 128 83-229 13-140 (143)
333 PF06552 TOM20_plant: Plant sp 86.6 3 6.5E-05 34.5 6.5 35 433-467 50-84 (186)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 86.5 11 0.00023 27.6 8.5 63 330-394 22-84 (103)
335 PF11207 DUF2989: Protein of u 86.4 14 0.0003 31.5 10.5 75 397-472 118-198 (203)
336 KOG2396 HAT (Half-A-TPR) repea 86.2 35 0.00077 33.4 31.5 387 75-479 103-557 (568)
337 COG2909 MalT ATP-dependent tra 86.1 50 0.0011 35.0 27.7 215 260-477 426-684 (894)
338 PF14561 TPR_20: Tetratricopep 85.8 7.4 0.00016 28.3 7.7 44 439-482 9-52 (90)
339 KOG4570 Uncharacterized conser 85.4 13 0.00029 33.8 10.3 33 413-445 130-162 (418)
340 PRK10941 hypothetical protein; 85.3 5.5 0.00012 36.0 8.3 61 421-481 184-244 (269)
341 KOG3364 Membrane protein invol 85.1 14 0.00031 29.0 9.1 70 383-452 29-105 (149)
342 PRK15180 Vi polysaccharide bio 85.1 7.9 0.00017 37.3 9.3 120 327-450 301-423 (831)
343 KOG1464 COP9 signalosome, subu 85.1 27 0.00059 31.1 16.9 222 216-444 67-329 (440)
344 KOG1586 Protein required for f 84.8 26 0.00056 30.6 13.6 50 329-378 128-182 (288)
345 COG4455 ImpE Protein of avirul 84.8 4.1 9E-05 34.8 6.7 62 390-451 5-68 (273)
346 smart00028 TPR Tetratricopepti 84.3 2.4 5.2E-05 22.7 4.0 27 423-449 6-32 (34)
347 KOG2063 Vacuolar assembly/sort 84.2 64 0.0014 34.6 17.0 26 48-73 506-531 (877)
348 TIGR02508 type_III_yscG type I 82.6 17 0.00037 26.8 9.5 62 291-355 46-107 (115)
349 KOG1550 Extracellular protein 82.5 62 0.0013 33.2 16.5 15 265-279 228-242 (552)
350 PF04184 ST7: ST7 protein; In 82.3 54 0.0012 32.3 19.7 77 317-395 261-340 (539)
351 PF06552 TOM20_plant: Plant sp 81.8 5.3 0.00012 33.1 6.1 103 413-526 63-177 (186)
352 COG3947 Response regulator con 81.8 40 0.00087 30.5 15.9 58 422-479 283-340 (361)
353 TIGR03504 FimV_Cterm FimV C-te 81.8 3.3 7.1E-05 25.3 3.7 27 456-482 3-29 (44)
354 PF11207 DUF2989: Protein of u 81.4 16 0.00035 31.1 8.9 42 130-171 153-197 (203)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 81.0 11 0.00024 27.5 6.7 46 413-458 37-82 (103)
356 PF02284 COX5A: Cytochrome c o 80.9 13 0.00027 27.6 7.0 47 413-459 40-86 (108)
357 smart00386 HAT HAT (Half-A-TPR 80.7 3.4 7.4E-05 22.6 3.6 30 432-461 1-30 (33)
358 KOG0545 Aryl-hydrocarbon recep 80.5 12 0.00026 32.7 8.0 61 422-482 234-294 (329)
359 smart00028 TPR Tetratricopepti 79.5 4.1 9E-05 21.7 3.8 29 453-481 2-30 (34)
360 COG1747 Uncharacterized N-term 79.4 68 0.0015 31.7 19.3 159 213-378 65-233 (711)
361 KOG1308 Hsp70-interacting prot 78.6 1.6 3.6E-05 39.8 2.5 56 427-482 157-212 (377)
362 PF13929 mRNA_stabil: mRNA sta 78.2 54 0.0012 29.8 13.1 60 149-208 199-263 (292)
363 PF09986 DUF2225: Uncharacteri 77.6 5.5 0.00012 34.7 5.4 91 430-540 89-193 (214)
364 PF08311 Mad3_BUB1_I: Mad3/BUB 77.4 20 0.00043 28.2 7.9 42 436-477 81-124 (126)
365 KOG0276 Vesicle coat complex C 77.0 24 0.00052 35.3 9.7 21 48-68 616-636 (794)
366 PF10579 Rapsyn_N: Rapsyn N-te 76.0 7.3 0.00016 27.2 4.4 46 429-474 17-65 (80)
367 KOG0551 Hsp90 co-chaperone CNS 75.9 15 0.00033 33.7 7.6 93 388-480 83-181 (390)
368 KOG0376 Serine-threonine phosp 75.9 5.5 0.00012 38.4 5.2 91 359-452 13-106 (476)
369 PF13762 MNE1: Mitochondrial s 75.5 38 0.00082 27.2 9.0 91 36-131 27-129 (145)
370 KOG2471 TPR repeat-containing 75.1 48 0.001 32.4 10.9 105 291-398 247-381 (696)
371 COG4455 ImpE Protein of avirul 74.1 24 0.00051 30.5 7.8 59 81-145 5-63 (273)
372 PRK11619 lytic murein transgly 73.3 1.2E+02 0.0027 31.7 39.8 247 227-486 254-510 (644)
373 PF09477 Type_III_YscG: Bacter 73.1 37 0.0008 25.5 9.5 86 265-354 22-107 (116)
374 PRK13800 putative oxidoreducta 72.8 1.6E+02 0.0034 32.6 28.6 92 283-378 788-880 (897)
375 cd08819 CARD_MDA5_2 Caspase ac 72.3 17 0.00038 26.0 5.7 36 164-200 48-83 (88)
376 KOG0403 Neoplastic transformat 72.1 99 0.0022 30.0 18.0 24 217-240 348-371 (645)
377 PF07163 Pex26: Pex26 protein; 71.9 50 0.0011 29.8 9.6 87 221-307 90-181 (309)
378 TIGR03504 FimV_Cterm FimV C-te 71.7 10 0.00022 23.1 3.9 24 321-344 5-28 (44)
379 PF10579 Rapsyn_N: Rapsyn N-te 71.6 14 0.00031 25.8 5.0 47 362-408 18-65 (80)
380 KOG4507 Uncharacterized conser 71.6 15 0.00033 36.4 7.0 100 363-463 620-721 (886)
381 PF08424 NRDE-2: NRDE-2, neces 71.2 92 0.002 29.3 15.5 132 314-448 18-184 (321)
382 PF09670 Cas_Cas02710: CRISPR- 71.1 86 0.0019 30.3 12.2 51 327-378 143-197 (379)
383 COG4976 Predicted methyltransf 70.6 11 0.00023 32.7 5.1 59 428-486 5-63 (287)
384 KOG1464 COP9 signalosome, subu 69.8 83 0.0018 28.2 18.4 186 226-412 39-258 (440)
385 PF09986 DUF2225: Uncharacteri 69.4 37 0.0008 29.6 8.5 48 435-482 142-195 (214)
386 KOG4077 Cytochrome c oxidase, 68.5 44 0.00095 26.0 7.4 71 333-414 67-137 (149)
387 KOG0687 26S proteasome regulat 68.4 1E+02 0.0022 28.6 13.2 22 355-376 109-130 (393)
388 KOG0889 Histone acetyltransfer 68.1 3.3E+02 0.0073 34.5 19.6 189 42-243 2450-2661(3550)
389 PF14863 Alkyl_sulf_dimr: Alky 68.1 28 0.00062 27.9 6.9 63 402-467 57-119 (141)
390 PRK13342 recombination factor 67.6 1.3E+02 0.0028 29.5 13.5 112 134-259 154-275 (413)
391 KOG1498 26S proteasome regulat 67.3 1.2E+02 0.0026 29.0 18.0 220 283-531 51-287 (439)
392 KOG4507 Uncharacterized conser 67.1 53 0.0012 32.9 9.6 134 347-482 568-706 (886)
393 PF09477 Type_III_YscG: Bacter 66.7 53 0.0011 24.7 9.2 76 132-210 21-96 (116)
394 KOG1550 Extracellular protein 66.1 1.6E+02 0.0036 30.2 21.4 272 199-482 228-539 (552)
395 PF12862 Apc5: Anaphase-promot 66.1 23 0.00049 26.0 5.7 53 428-480 8-69 (94)
396 COG3947 Response regulator con 66.0 1.1E+02 0.0023 28.0 14.5 54 391-444 284-339 (361)
397 COG5159 RPN6 26S proteasome re 65.5 1.1E+02 0.0023 27.8 12.8 199 220-446 9-234 (421)
398 PF10366 Vps39_1: Vacuolar sor 64.8 51 0.0011 25.0 7.4 29 77-105 39-67 (108)
399 PRK12798 chemotaxis protein; R 64.8 1.4E+02 0.003 28.9 21.1 150 297-448 125-287 (421)
400 PF04910 Tcf25: Transcriptiona 64.7 1.4E+02 0.0029 28.7 14.4 55 426-480 111-167 (360)
401 COG5191 Uncharacterized conser 62.9 15 0.00032 33.5 4.7 80 381-460 102-184 (435)
402 KOG2582 COP9 signalosome, subu 62.7 1.4E+02 0.003 28.2 14.0 96 79-180 104-211 (422)
403 cd08819 CARD_MDA5_2 Caspase ac 62.5 56 0.0012 23.5 7.0 38 296-334 48-85 (88)
404 PRK13800 putative oxidoreducta 61.7 2.6E+02 0.0056 30.9 28.3 158 308-479 721-879 (897)
405 PF04097 Nic96: Nup93/Nic96; 61.5 2.1E+02 0.0046 29.9 21.2 86 290-378 264-355 (613)
406 KOG0686 COP9 signalosome, subu 61.4 1.6E+02 0.0034 28.4 13.5 57 186-242 153-215 (466)
407 PF12862 Apc5: Anaphase-promot 60.9 49 0.0011 24.2 6.6 25 424-448 47-71 (94)
408 PF04190 DUF410: Protein of un 60.6 1.3E+02 0.0029 27.2 16.6 158 59-243 3-170 (260)
409 KOG0889 Histone acetyltransfer 60.2 4.6E+02 0.01 33.4 19.8 171 90-278 2393-2580(3550)
410 PF07163 Pex26: Pex26 protein; 60.1 64 0.0014 29.1 8.0 87 84-175 90-181 (309)
411 KOG4814 Uncharacterized conser 59.7 2E+02 0.0044 29.5 12.0 85 397-481 365-457 (872)
412 PF11846 DUF3366: Domain of un 59.2 44 0.00095 28.6 7.1 37 413-449 139-175 (193)
413 PF11846 DUF3366: Domain of un 58.9 39 0.00085 28.9 6.8 30 383-412 141-170 (193)
414 KOG3824 Huntingtin interacting 58.9 20 0.00043 32.6 4.8 60 397-456 127-188 (472)
415 TIGR01503 MthylAspMut_E methyl 58.8 46 0.00099 32.4 7.4 70 460-529 248-319 (480)
416 PF10366 Vps39_1: Vacuolar sor 58.6 78 0.0017 24.0 7.8 28 215-242 40-67 (108)
417 KOG4279 Serine/threonine prote 58.6 1.8E+02 0.0039 30.4 11.7 191 267-460 181-408 (1226)
418 PF08424 NRDE-2: NRDE-2, neces 57.4 1.7E+02 0.0037 27.5 15.2 97 281-378 16-130 (321)
419 smart00777 Mad3_BUB1_I Mad3/BU 56.9 94 0.002 24.3 8.4 40 437-476 82-123 (125)
420 PRK10941 hypothetical protein; 55.6 1.6E+02 0.0034 26.9 10.1 60 319-379 185-244 (269)
421 cd08326 CARD_CASP9 Caspase act 55.3 34 0.00075 24.5 4.8 34 165-198 43-76 (84)
422 COG4976 Predicted methyltransf 55.0 22 0.00047 30.9 4.2 55 397-451 6-62 (287)
423 PF14689 SPOB_a: Sensor_kinase 54.9 31 0.00067 22.9 4.2 24 389-412 26-49 (62)
424 KOG3364 Membrane protein invol 53.9 1.1E+02 0.0024 24.3 8.6 72 347-418 29-104 (149)
425 COG0790 FOG: TPR repeat, SEL1 52.1 1.9E+02 0.0042 26.5 20.1 77 404-483 173-268 (292)
426 KOG4077 Cytochrome c oxidase, 51.7 88 0.0019 24.4 6.5 46 412-457 78-123 (149)
427 KOG0545 Aryl-hydrocarbon recep 51.5 1.8E+02 0.0038 25.9 9.4 88 290-378 184-292 (329)
428 cd00280 TRFH Telomeric Repeat 50.6 95 0.0021 26.1 7.0 68 366-433 85-158 (200)
429 KOG1308 Hsp70-interacting prot 50.4 16 0.00035 33.7 3.0 83 364-448 128-212 (377)
430 PHA02875 ankyrin repeat protei 49.9 2.6E+02 0.0056 27.3 18.0 202 32-248 16-229 (413)
431 PF10345 Cohesin_load: Cohesin 49.8 3.3E+02 0.0071 28.5 27.2 157 119-276 61-252 (608)
432 KOG2396 HAT (Half-A-TPR) repea 49.8 2.8E+02 0.006 27.7 27.9 104 339-446 449-558 (568)
433 KOG4521 Nuclear pore complex, 49.8 4.2E+02 0.009 29.7 14.5 121 352-474 985-1124(1480)
434 KOG0376 Serine-threonine phosp 49.7 44 0.00096 32.6 5.9 101 324-428 13-115 (476)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 49.6 1.3E+02 0.0027 23.7 8.8 43 135-177 81-124 (126)
436 PRK09462 fur ferric uptake reg 48.5 58 0.0012 26.4 5.8 59 4-62 7-68 (148)
437 PF10255 Paf67: RNA polymerase 48.4 96 0.0021 30.1 7.9 57 286-342 124-191 (404)
438 COG5187 RPN7 26S proteasome re 48.3 2.2E+02 0.0047 26.0 11.9 27 385-411 114-140 (412)
439 PF14561 TPR_20: Tetratricopep 47.7 1.1E+02 0.0023 22.3 7.8 31 348-378 20-50 (90)
440 KOG2300 Uncharacterized conser 47.5 3E+02 0.0064 27.4 29.4 187 84-277 14-240 (629)
441 KOG2422 Uncharacterized conser 47.1 3.3E+02 0.0071 27.7 12.2 140 327-467 250-431 (665)
442 KOG4279 Serine/threonine prote 47.0 3.7E+02 0.0081 28.4 11.9 190 32-243 184-395 (1226)
443 KOG2300 Uncharacterized conser 46.5 3.1E+02 0.0067 27.3 33.2 374 89-476 59-509 (629)
444 COG4941 Predicted RNA polymera 45.7 2.6E+02 0.0057 26.2 10.2 117 331-452 272-399 (415)
445 PF07720 TPR_3: Tetratricopept 45.5 60 0.0013 18.8 4.5 19 456-474 5-23 (36)
446 KOG0686 COP9 signalosome, subu 45.1 3E+02 0.0064 26.6 14.9 63 215-277 151-215 (466)
447 COG0735 Fur Fe2+/Zn2+ uptake r 44.3 80 0.0017 25.5 5.9 57 4-60 11-69 (145)
448 COG2909 MalT ATP-dependent tra 44.0 4.5E+02 0.0097 28.4 29.8 220 193-412 425-685 (894)
449 PF09454 Vps23_core: Vps23 cor 43.6 59 0.0013 21.9 4.2 48 313-361 6-53 (65)
450 PRK13342 recombination factor 43.4 3.3E+02 0.0072 26.7 15.8 43 318-360 230-275 (413)
451 PF11663 Toxin_YhaV: Toxin wit 42.9 29 0.00063 27.3 3.0 32 224-257 105-136 (140)
452 PF13877 RPAP3_C: Potential Mo 42.9 1.2E+02 0.0026 22.1 6.3 18 83-100 71-88 (94)
453 PF06957 COPI_C: Coatomer (COP 42.7 1.7E+02 0.0037 28.6 8.6 45 407-451 287-333 (422)
454 PRK10564 maltose regulon perip 42.6 52 0.0011 30.1 4.9 37 216-252 259-295 (303)
455 cd08332 CARD_CASP2 Caspase act 42.5 62 0.0013 23.6 4.5 28 167-194 49-76 (90)
456 KOG2908 26S proteasome regulat 42.0 2.8E+02 0.0062 26.0 9.3 87 285-371 76-178 (380)
457 KOG2297 Predicted translation 41.8 2.9E+02 0.0062 25.6 9.4 46 215-269 295-341 (412)
458 PF13762 MNE1: Mitochondrial s 41.6 1.9E+02 0.0041 23.4 10.6 49 314-362 78-127 (145)
459 PRK10564 maltose regulon perip 41.0 58 0.0013 29.8 5.0 40 317-356 259-298 (303)
460 PRK11639 zinc uptake transcrip 40.4 84 0.0018 26.2 5.7 58 3-60 15-74 (169)
461 PF11817 Foie-gras_1: Foie gra 40.4 1.1E+02 0.0025 27.3 6.9 22 391-412 183-204 (247)
462 PF11838 ERAP1_C: ERAP1-like C 40.1 3.1E+02 0.0068 25.5 19.4 111 366-477 146-262 (324)
463 KOG3824 Huntingtin interacting 40.0 53 0.0012 30.0 4.5 55 361-417 127-182 (472)
464 PF14689 SPOB_a: Sensor_kinase 39.8 74 0.0016 21.1 4.2 23 254-276 28-50 (62)
465 PF04090 RNA_pol_I_TF: RNA pol 39.2 2.5E+02 0.0054 24.1 9.9 36 315-351 41-76 (199)
466 PF13929 mRNA_stabil: mRNA sta 38.7 3.2E+02 0.0068 25.1 23.4 113 300-412 144-264 (292)
467 PF04781 DUF627: Protein of un 38.3 1.8E+02 0.0039 22.2 7.1 98 358-478 4-104 (111)
468 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 2E+02 0.0044 23.2 7.3 62 99-166 8-69 (145)
469 PF10516 SHNi-TPR: SHNi-TPR; 37.7 87 0.0019 18.4 3.8 28 453-480 2-29 (38)
470 COG2912 Uncharacterized conser 37.6 1.2E+02 0.0026 27.4 6.3 56 426-481 189-244 (269)
471 cd08326 CARD_CASP9 Caspase act 37.3 1.6E+02 0.0034 21.2 6.0 37 296-332 42-78 (84)
472 KOG2063 Vacuolar assembly/sort 36.9 6E+02 0.013 27.8 19.0 30 77-106 504-533 (877)
473 PF15297 CKAP2_C: Cytoskeleton 36.9 1.8E+02 0.0038 27.4 7.4 49 402-450 119-172 (353)
474 PF11848 DUF3368: Domain of un 36.6 1.1E+02 0.0023 19.1 5.1 33 326-358 13-45 (48)
475 PF02184 HAT: HAT (Half-A-TPR) 36.5 82 0.0018 17.7 3.4 26 433-459 2-27 (32)
476 PF11817 Foie-gras_1: Foie gra 36.4 2.2E+02 0.0048 25.5 8.1 76 403-478 162-244 (247)
477 KOG2659 LisH motif-containing 36.0 3E+02 0.0066 24.2 10.1 97 381-477 21-128 (228)
478 KOG1839 Uncharacterized protei 35.9 3.9E+02 0.0085 30.2 10.8 154 324-477 941-1124(1236)
479 PF03745 DUF309: Domain of unk 35.4 87 0.0019 20.8 4.0 47 87-138 9-60 (62)
480 KOG0403 Neoplastic transformat 34.9 4.5E+02 0.0098 25.8 19.7 101 318-432 512-616 (645)
481 cd08323 CARD_APAF1 Caspase act 34.8 1.2E+02 0.0026 21.9 4.9 37 164-200 40-76 (86)
482 PRK14956 DNA polymerase III su 34.4 3.7E+02 0.008 27.0 9.7 88 39-153 195-284 (484)
483 PRK09857 putative transposase; 34.2 3.1E+02 0.0068 25.3 8.8 64 422-485 210-273 (292)
484 KOG0292 Vesicle coat complex C 34.2 72 0.0016 33.8 4.9 45 398-445 655-699 (1202)
485 COG4003 Uncharacterized protei 34.1 1.3E+02 0.0028 21.2 4.6 41 8-52 31-71 (98)
486 KOG3807 Predicted membrane pro 33.9 4E+02 0.0087 24.9 14.8 54 321-376 281-337 (556)
487 PF11768 DUF3312: Protein of u 33.3 5.3E+02 0.012 26.2 10.5 22 320-341 413-434 (545)
488 PF04910 Tcf25: Transcriptiona 32.9 4.5E+02 0.0098 25.2 15.0 124 149-276 37-166 (360)
489 TIGR02270 conserved hypothetic 32.5 4.9E+02 0.011 25.5 25.5 41 286-326 102-142 (410)
490 COG4259 Uncharacterized protei 32.0 1.8E+02 0.0039 21.6 5.3 27 451-477 71-97 (121)
491 PF12968 DUF3856: Domain of Un 31.8 2.5E+02 0.0054 21.9 7.2 19 459-477 107-125 (144)
492 KOG1524 WD40 repeat-containing 31.1 2.9E+02 0.0064 27.6 8.1 23 352-374 575-597 (737)
493 PF09670 Cas_Cas02710: CRISPR- 30.7 5.1E+02 0.011 25.1 12.0 56 222-278 139-198 (379)
494 PHA02537 M terminase endonucle 30.5 3.9E+02 0.0084 23.7 8.6 22 325-346 93-114 (230)
495 PF00244 14-3-3: 14-3-3 protei 30.5 3.9E+02 0.0085 23.8 15.3 162 321-483 7-200 (236)
496 PF09454 Vps23_core: Vps23 cor 30.4 60 0.0013 21.9 2.6 29 79-107 10-38 (65)
497 PF12926 MOZART2: Mitotic-spin 29.9 2.1E+02 0.0047 20.6 6.6 42 138-179 29-70 (88)
498 KOG4567 GTPase-activating prot 29.6 4.6E+02 0.01 24.3 9.4 85 138-223 264-358 (370)
499 KOG0292 Vesicle coat complex C 29.5 7.7E+02 0.017 26.9 11.0 130 293-446 652-781 (1202)
500 COG5108 RPO41 Mitochondrial DN 29.4 2.8E+02 0.0061 28.7 7.9 73 355-427 33-112 (1117)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-77 Score=631.67 Aligned_cols=525 Identities=33% Similarity=0.617 Sum_probs=494.1
Q ss_pred CcchhhhcCCCCChhhHHHHHHhccChh---HHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc
Q 048358 1 MAARIGALSIKELEDRFVPILQSCENLI---ELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV 77 (541)
Q Consensus 1 ~~~~m~~~g~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 77 (541)
+|.+|++.|++||..||..++++|+..+ .+.+++..+++.|+.||+.++|+|+.+|+++|++++|.++|++|+++|.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~ 253 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc
Confidence 3678999999999999999999998655 4589999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHH
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENA 157 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (541)
.+||.+|.+|++.|++++|+++|++|.+.|+ .||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-----~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSV-----DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 9999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc-----------------------------------------
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL----------------------------------------- 196 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------------- 196 (541)
|+.+|++.|++++|.++|++|..||..+|+.++.+|.+.
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 999999999999999999999888877777777777764
Q ss_pred -----------------------------CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048358 197 -----------------------------GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 197 -----------------------------~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 247 (541)
|++++|.++|++|.++|+.+|+.++.+|++.|+.++|+.+|++|.. +++|
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~p 487 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKP 487 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCC
Confidence 4555555555555566777788888888888888888888888875 5899
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN 327 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 327 (541)
|..||+.++.+|++.|+++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .+|..+||++|.+|++
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVA 566 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++.+|++.|++++|.+
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999778999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 408 IIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 408 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
++++|+++||..+|..|+.+|...|+.+.+....+++.+++|+++..|..|++.|.+.|+|++|.++.+.|++.|+.+.|
T Consensus 647 ~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 647 FINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
|+|||++++.++.|..++..||+..+||..|..+..++++.....
T Consensus 727 g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 727 GCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred CccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 999999999999999999999999999999999999998765543
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-73 Score=590.08 Aligned_cols=487 Identities=29% Similarity=0.537 Sum_probs=398.5
Q ss_pred CCCChhhHHHHHHhccChh---HHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHH
Q 048358 10 IKELEDRFVPILQSCENLI---ELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRA 86 (541)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 86 (541)
..|+..||..++.+|+..+ .+.+++..+.+.|+.||+.+||.++.+|+++|+++.|.++|++|++||..+||.++.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 4455555555555443322 2345555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC
Q 048358 87 YTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD 166 (541)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 166 (541)
|++.|++++|+++|++|.+.|+ .|+..||..++.+|+..|..+.+.+++..+.+.|+.||..+++.|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~-----~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L-------- 265 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGS-----DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL-------- 265 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCC-----CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH--------
Confidence 5555555555555555555444 455555555555555555555555555555555555555555554
Q ss_pred ChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048358 167 ELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIE 246 (541)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 246 (541)
+.+|++.|++++|.++|+.|.++|+++||.++.+|++.|++++|+++|++|.+.|+.
T Consensus 266 -----------------------i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 266 -----------------------IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred -----------------------HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 455555555555555555566778888999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHH
Q 048358 247 PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLA 326 (541)
Q Consensus 247 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 326 (541)
||..||+.++.+|++.|+++.|.+++..|.+.|++||..+|+.|+++|++.|++++|.++|++|.++|..+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
+++++|+..|+..+|+.++.+|...|+++.|..+++++.+.+|++..+|..|+++|.+.|+|++|.++++.|++.|+.+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 487 PGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
||+||+++++.++.|.+++..||+..++|..|..+..++++.....
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999998765443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-67 Score=554.21 Aligned_cols=503 Identities=30% Similarity=0.501 Sum_probs=460.1
Q ss_pred CcchhhhcCCCCChhhHHHHHHhccC---hhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc
Q 048358 1 MAARIGALSIKELEDRFVPILQSCEN---LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV 77 (541)
Q Consensus 1 ~~~~m~~~g~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 77 (541)
+|..|.+.|++|+..+|..+++.|.. +..+.+++..+.+.+..++..++|+++..|++.|+++.|.++|++|++||.
T Consensus 73 l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL 152 (857)
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCe
Confidence 36789999999999999999999864 445689999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHH
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENA 157 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (541)
.+||.+|.+|++.|++++|+++|++|...|+ .||..||+.++++|+..+++..+.+++..+.+.|+.|+..+++.
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-----~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-----RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 9999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh------------------------------------------
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR------------------------------------------ 195 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~------------------------------------------ 195 (541)
|+.+|++.|++++|.++|++|..+|..+||++|.+|++
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999987766666666655554
Q ss_pred ----------------------------cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048358 196 ----------------------------LGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 196 ----------------------------~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 247 (541)
.|++++|.++|++|..+|+.+||.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 6777777777888888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN 327 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 327 (541)
|..||+.++.+|++.|+++.+.+++..+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|..+|+.++.+|++
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..+++.|++.|.++|++++|.+
T Consensus 468 ~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHH
Confidence 9999999999999986 58999999999999999999999999999999985 899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCcc
Q 048358 408 IIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE-PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR-SKSMKK 485 (541)
Q Consensus 408 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~ 485 (541)
+|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+.+ .||..+|..++.+|.+.|++++|.++|+.|. +.|+.|
T Consensus 546 ~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 546 QFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 99999 7999999999999999999999999999999866 5568899999999999999999999999998 556655
Q ss_pred CCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccc
Q 048358 486 TPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
+ ...|..|..++.+.|+.++|.+.+++
T Consensus 624 ~-------------------------~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 624 N-------------------------LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred c-------------------------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 24455566666666666666555544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-62 Score=509.24 Aligned_cols=515 Identities=18% Similarity=0.234 Sum_probs=447.1
Q ss_pred CcchhhhcCCC-CChhhHHHHHHhccC---hhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--
Q 048358 1 MAARIGALSIK-ELEDRFVPILQSCEN---LIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-- 74 (541)
Q Consensus 1 ~~~~m~~~g~~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 74 (541)
+|..|...|+. |+..++..++..|.. ..++..++..|. .||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G 467 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG 467 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 36788898964 566666777777754 445556666554 39999999999999999999999999999874
Q ss_pred --CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch
Q 048358 75 --PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHS 152 (541)
Q Consensus 75 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 152 (541)
||..+|+.+|.+|++.|++++|.++|++|.+.|+ .||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 468 l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-----~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-----EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 8999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHhhcC------CCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHH
Q 048358 153 ITENALLDLYGKCDELIEAHKVFEEMT------DRDIVAWNNLISGYARLGQMKKARMLFDKMPY----TTIVSWTAMIS 222 (541)
Q Consensus 153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~ 222 (541)
.+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+ +++.+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999999999999999995 38999999999999999999999999999974 56689999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 223 GYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcc----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 303 ASQLFDQM----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 303 A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|.++|++| ..||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++|+.|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999 46899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCcHhHHHHHHHHHHh----c-------------------CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcC
Q 048358 379 DHHIEHKIEHYGCLVDLLGR----A-------------------GRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYS 432 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~ 432 (541)
. |+.|+..+|+.++..|.+ + +..++|..+|++| ++.||..||..++.++...+
T Consensus 783 ~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 783 D-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc
Confidence 5 899999999999876432 1 1246799999999 89999999999998888889
Q ss_pred CHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 433 NLEIAVIAMEHLLVL-EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
..+.+..+++.+... .+++..+|+.|++++.+. .++|..++++|...|+.|........+.-.++ ++-|..
T Consensus 862 ~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~------~~~~~a 933 (1060)
T PLN03218 862 DATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAE------ELPVFA 933 (1060)
T ss_pred cHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcc------cCcchh
Confidence 999999998887643 366788999999988432 36899999999999998874321101111111 223333
Q ss_pred h--HHHHHHHHHHHHHhcccCCcc
Q 048358 512 K--DIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 512 ~--~~~~~l~~~~~~~~~~~~a~~ 533 (541)
+ ..+.-|..++.++...++...
T Consensus 934 a~~~l~~wl~~~~~~~~~g~~lp~ 957 (1060)
T PLN03218 934 AEVYLLTILKGLKHRLAAGAKLPN 957 (1060)
T ss_pred HHHHHHHHHHHHHHHHhccCcCCc
Confidence 3 335567777777765555443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-61 Score=499.38 Aligned_cols=469 Identities=15% Similarity=0.199 Sum_probs=437.0
Q ss_pred CChhhHHHHHHhc---cChhHHHHHHHHHHHhcc-CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048358 12 ELEDRFVPILQSC---ENLIELKKIHTQILKYLL-SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAY 87 (541)
Q Consensus 12 ~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 87 (541)
++...+..++..+ ++++++.++++.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444555666655 688889999999999995 578888899999999999999999999999999999999999999
Q ss_pred HcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 88 TNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
++.|++++|.++|+.|.+.|+ .||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl-----~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGL-----KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHH
Q 048358 168 LIEAHKVFEEMTD----RDIVAWNNLISGYARLGQMKKARMLFDKMP------YTTIVSWTAMISGYTHIGSYAEALDVF 237 (541)
Q Consensus 168 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 237 (541)
+++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 899999999999999999999999999994 578899999999999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC----CC
Q 048358 238 RQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV----ER 313 (541)
Q Consensus 238 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 313 (541)
++|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994 47
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 8999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhh-----------------------cCCHHHHHHHHHHHhcc
Q 048358 394 DLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRT-----------------------YSNLEIAVIAMEHLLVL 447 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~~ 447 (541)
.+|.+.|++++|.++++.| ++.||..+|+.++..|.+ .+..+.|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999 789999999999876542 12346799999999987
Q ss_pred C-CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 448 E-PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 448 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
+ .|+..+|..++.++...+.++.+..+++.|...+..+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 7 56788999999888889999999999998877765443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-55 Score=453.77 Aligned_cols=445 Identities=18% Similarity=0.224 Sum_probs=326.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCC-CCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDP-RTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI 153 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 153 (541)
.+..+|+.++.++.+.|++++|+++|+.|...+ . .||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-----~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPF-----TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 566677777777777777777777777777643 3 6777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCC
Q 048358 154 TENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP----YTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~ 229 (541)
+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 777777777777777777777777777777777777777777777777777777774 4566777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
.+.+.+++..+.+.|+.||..+|+.++.+|++.|+++.|.++|+.|. ++|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777764 34677777777777777777777777777
Q ss_pred c----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc
Q 048358 310 M----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK 385 (541)
Q Consensus 310 ~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 385 (541)
| ..||..||++++.+|++.|++++|.+++..|.+.|++||..+|+.|+.+|++.|++++|.++|++|.+ ||
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d 390 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KN 390 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CC
Confidence 7 45677777777777777777777777777777777777777777777777777777777777777753 56
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLLSN 460 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 460 (541)
..+|+.||.+|++.|+.++|.++|++| ++.||..||+.++.+|.+.|++++|.++|+.|.+.. .++..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 777777777777777777777777777 677777777777777777777777777777776532 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCccCCceeEE--------EEcCEEEE--EEeCCCCCCChhHHHHHHHHHHHHHhcccC
Q 048358 461 IYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI--------EVNNEVQE--FVSGDDTKPFLKDIFWLLELLALHQDRAKD 530 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 530 (541)
+|++.|++++|.+++++|.. .|+... |- +.+...+. +....+..|++...|..|.++|.+.|+.++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~---~p~~~~-~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPF---KPTVNM-WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCC---CCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 77777777777777776632 222110 10 11101110 111125789888899999999999999999
Q ss_pred Ccccccc
Q 048358 531 VIDIMYE 537 (541)
Q Consensus 531 a~~~~~~ 537 (541)
|.+.+++
T Consensus 547 A~~v~~~ 553 (697)
T PLN03081 547 AAKVVET 553 (697)
T ss_pred HHHHHHH
Confidence 9887654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.8e-31 Score=287.60 Aligned_cols=505 Identities=12% Similarity=0.045 Sum_probs=308.4
Q ss_pred HHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHH
Q 048358 21 LQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAI 97 (541)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~ 97 (541)
+...+..+.+...++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+ .+...+..++..+.+.|++++|.
T Consensus 373 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 373 YLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 334456666666666666543 33556666777777777777777777776654 12334455666677777777777
Q ss_pred HHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhh
Q 048358 98 NLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE 177 (541)
Q Consensus 98 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (541)
.+++.+.... +++..++..+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 452 ~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 452 AAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHhC------CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777776653 4556667777777777777777777777776654 33445556666677777777777777776
Q ss_pred cCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 048358 178 MTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS 251 (541)
Q Consensus 178 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 251 (541)
+.+ .+..++..+...+.+.|+.++|...|+++.. .+...+..++..+...|++++|..+++++.... +.+..+
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 654 2445666666666677777777777666532 233455566666666677777777666666542 445556
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhc
Q 048358 252 IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANH 328 (541)
Q Consensus 252 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (541)
|..+...+...|+++.|...++.+.+.. +.+...+..++.+|...|++++|...|+++.+ .+..++..++..+...
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 6666666666667776666666666543 23445566666666666666666666666533 2345566666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNI 408 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 408 (541)
|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++..+.+.|++++|.+.
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666554 445555555666666666666666666666543 23334455556666666666666666
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 409 IEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 409 ~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
++++ ... .+...+..+...|...|++++|...|+++++..|+++.++..++.++...|+ ++|+.+++++.+......
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 6555 222 2445555555556666666666666666666666666666666666666666 556666665554321111
Q ss_pred C-----ceeEE---EEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 487 P-----GCSLI---EVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 487 ~-----~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
. +.... ....++..+....+..|.++.++..++.++...|+.++|.+.++++++
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 0 00000 001111112222245788889999999999999999999998887653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-31 Score=284.76 Aligned_cols=502 Identities=15% Similarity=0.077 Sum_probs=370.6
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHH
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQ 102 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 102 (541)
....+...+..+.+.. +.++..+..+...+.+.|++++|.++|+++.+ .+...|..+...+...|++++|+..|+.
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3333444444443332 23444555555556666666666666655443 2333445555555566666666666666
Q ss_pred hhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--
Q 048358 103 MLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD-- 180 (541)
Q Consensus 103 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 180 (541)
+.+.. +........++..+.+.|+++.|..+++.+.... +.+..++..+..++...|++++|.+.|+++.+
T Consensus 423 a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 423 AAQLD------PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHhhC------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 55543 2233444455556666666666666666666542 44566777777788888888888888877654
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 048358 181 -RDIVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVL 256 (541)
Q Consensus 181 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 256 (541)
.+...+..+...+...|++++|.+.|+.+.. .+..++..+...+.+.|++++|...++++...+ +.+...+..+.
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 3445667777778888888888888877642 355677778888888888888888888887654 44566677788
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH
Q 048358 257 PACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK 333 (541)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 333 (541)
..+...|+++.|..+++.+.+.. +.+..+|..++.+|...|++++|...|+.+.+ .+...+..+..++...|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 88888899999998888887654 45677888899999999999999999988743 356678888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.... +++...+..+...+.+.|++++|.+.|+.+
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988865 5667888889999999999999999999998753 567777888999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC---ce
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP---GC 489 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~ 489 (541)
...|+..++..+..++.+.|++++|.+.++++++..|+++..+..++.+|...|++++|.+.++++.+....... ..
T Consensus 731 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred hhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 566777888889999999999999999999999999999999999999999999999999999999887543221 11
Q ss_pred eEE--EEcC--EEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 490 SLI--EVNN--EVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 490 ~~~--~~~~--~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.|+ ..+. ++..+....+..|+++..+..++.++..+|+.++|...++++|+
T Consensus 811 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 811 AWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 1111 11112222367899999999999999999999999999998875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6e-24 Score=231.04 Aligned_cols=500 Identities=12% Similarity=0.057 Sum_probs=340.3
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchH-----------------HHHHHH
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLY-----------------NAMIRA 86 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~ 86 (541)
+.+.+++.+..+.... +.++.++..++..+.+.|+.++|.+.++++.+ |+...+ ....+.
T Consensus 43 ~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 43 REDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred ChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3444556666555543 44788888899999999999999999999876 433222 223446
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcC
Q 048358 87 YTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT-LPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKC 165 (541)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 165 (541)
+.+.|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++.+.+.. +.+...+..+...+...
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~------p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA------PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC------CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 788999999999999998764 444321 1122222335689999999999999875 44677788889999999
Q ss_pred CChHHHHHHHhhcCCCCh-----------------------hhHH----------------------------------H
Q 048358 166 DELIEAHKVFEEMTDRDI-----------------------VAWN----------------------------------N 188 (541)
Q Consensus 166 g~~~~A~~~~~~~~~~~~-----------------------~~~~----------------------------------~ 188 (541)
|+.++|...++++..... ..+. .
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999887643100 0000 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHH------------
Q 048358 189 LISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP-DEISI------------ 252 (541)
Q Consensus 189 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~------------ 252 (541)
....+...|++++|+..|++... .+..++..+..++.+.|++++|+..|++..+..-.. ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 13345668999999999988753 356788889999999999999999999988753211 11111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHH---------
Q 048358 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWST--------- 320 (541)
Q Consensus 253 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~--------- 320 (541)
......+...|++++|...++++.+.. +.+...+..+..+|...|++++|++.|+++.+ | +...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 112345678899999999999998875 34566777889999999999999999988743 2 2222222
Q ss_pred ---------------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 321 ---------------------------------VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 321 ---------------------------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
+...+...|++++|+..|++..+.. +-+...+..+...|...|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2334556789999999999988865 445667778888999999999
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHHH--------------------------------------------HHHhcCCHH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLVD--------------------------------------------LLGRAGRLD 403 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~~g~~~ 403 (541)
+|...++++.+.. +.+...+..+.. .+...|+.+
T Consensus 513 ~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 513 QADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999987642 333333333333 334445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 404 QALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 404 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+|.++++.-+ ++...+..+...+.+.|++++|+..|+++++..|+++.++..++.+|...|++++|++.++.+.+...
T Consensus 591 eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 591 EAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 5555555322 24455666777788999999999999999999999999999999999999999999999998765432
Q ss_pred ccCC-----ceeEEE---EcCEEEEEEeCCCCCCC------hhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 484 KKTP-----GCSLIE---VNNEVQEFVSGDDTKPF------LKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 484 ~~~~-----~~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.... +..+.. ...++..+.......|+ +..++..++.++...|+.++|++.+++++
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 110100 01111111111122332 22355566777777777777777666543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-22 Score=221.32 Aligned_cols=453 Identities=12% Similarity=0.036 Sum_probs=266.7
Q ss_pred HHHhccChhHHHHHHHHHHHhccCCchhHHHHH-HHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhH
Q 048358 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKM-IDVCNSGGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGL 95 (541)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~ 95 (541)
++...+..+.+.+.++.+++.. +|+....... .......|+.++|.+.++++.+ | +...+..+...+...|+.++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 3445566777777777776543 3343221112 2222345888889999988875 3 44567777888888899888
Q ss_pred HHHHHHHhhhCCCCCC-----------CCC----------------CCcccH---------------------HHHHHHH
Q 048358 96 AINLYKQMLRDPRTGS-----------LIL----------------PDKFTL---------------------PFVIKSC 127 (541)
Q Consensus 96 A~~~~~~m~~~~~~~~-----------~~~----------------p~~~~~---------------------~~ll~~~ 127 (541)
|+..++++........ ... |+...+ ......+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 9888888754321000 000 110000 0113345
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CCh---hhHH------------HHH
Q 048358 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RDI---VAWN------------NLI 190 (541)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~l~ 190 (541)
...|++++|...+++.++.. +.+...+..+..++.+.|++++|...|++..+ |+. ..|. ...
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 56788889999998888865 33677788888888899999999988888765 321 1121 223
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH--------
Q 048358 191 SGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPAC-------- 259 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-------- 259 (541)
..+.+.|++++|...|+++.. .+...+..+..++...|++++|++.|++..+.. +.+...+..+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHH
Confidence 456778889999998887753 345677778888888999999999998888653 22233333333333
Q ss_pred ----------------------------------HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHH
Q 048358 260 ----------------------------------AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQ 305 (541)
Q Consensus 260 ----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (541)
...|++++|...++++.+.. +.+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23444445555554444433 1223344444555555555555555
Q ss_pred HHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCcHHHHHHHH
Q 048358 306 LFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI---------TFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 306 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.++++.+ | ++..+..+...+...++.++|+..++.+......++.. .+......+...|++++|.+++
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 5544422 1 22222222223333344444444433322111011100 0112233344445555555554
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++.++++.+..|++
T Consensus 597 ~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 597 RQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred Hh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 41 1344455666777777777777777777776 4445 45667777777777777777777777777777777
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+..+..++.++...|++++|.++++++....
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 7777777777777777777777777776543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-23 Score=192.72 Aligned_cols=412 Identities=14% Similarity=0.144 Sum_probs=343.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCC-------------------------------------CCcchHHHHHHHHHcCC
Q 048358 49 VTKMIDVCNSGGDLAYASLLFKQVKE-------------------------------------PNVFLYNAMIRAYTNNH 91 (541)
Q Consensus 49 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------------------~~~~~~~~ll~~~~~~g 91 (541)
...|..-.-+.|++.+|++......+ .-..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34455555667888888876654321 12346888888999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh-hHHHHHHHHHcCCChHH
Q 048358 92 LYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI-TENALLDLYGKCDELIE 170 (541)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~ 170 (541)
++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+...+-..|++.+
T Consensus 131 ~~~~al~~y~~aiel~------p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred hHHHHHHHHHHHHhcC------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 9999999999999985 5678899999999999999999999999998854 4433 33455566667899999
Q ss_pred HHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 171 AHKVFEEMTD--RD-IVAWNNLISGYARLGQMKKARMLFDKMPYTTI---VSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 171 A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
|...|.+..+ |. ..+|..|...+-.+|++-.|+.-|++..+-|+ .+|-.|...|-..+.+++|+..|.+....
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9999888765 43 46899999999999999999999999886655 58889999999999999999999998865
Q ss_pred CCCC-hHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHH
Q 048358 245 IEPD-EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWST 320 (541)
Q Consensus 245 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 320 (541)
.|+ ...+..+...|...|.++.|...+++.++.... -+..|+.|..++-..|+..+|...|++... | ...+.+.
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 554 456677777788999999999999999887532 267899999999999999999999998854 3 4668899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc-HhHHHHHHHHHHhc
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK-IEHYGCLVDLLGRA 399 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 399 (541)
|...|...|.+++|..+|....+.. +--...++.|...|-..|++++|+..|++..+ +.|+ ...|+.+...|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988853 33456789999999999999999999999986 4565 67899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 400 GRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 400 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
|+.+.|++.+.+. .+.|. ...++.|...|...|++.+|++.|+.++++.|+.+.+|..++.++.-..+|.+--+.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHH
Confidence 9999999999887 77886 5788999999999999999999999999999999999999999887777766643333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=9.3e-24 Score=195.47 Aligned_cols=388 Identities=13% Similarity=0.077 Sum_probs=242.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHH
Q 048358 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALL 159 (541)
Q Consensus 80 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 159 (541)
...+..-..+.|++++|.+.-...-+.+ +.+......+-..+.+..+.+...+--...++.. +.-..+|..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~a 123 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC------CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHH
Confidence 3345556677888888888776665543 3344444444555666666665555444444432 23456677777
Q ss_pred HHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHH
Q 048358 160 DLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIV---SWTAMISGYTHIGSYAEA 233 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 233 (541)
+.+-..|++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+..+-|+. ..+.+...+-..|+.++|
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchh
Confidence 777777777777777777765 24567777777777777777777777766544432 222233444456677777
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC-
Q 048358 234 LDVFRQMQMVGIEPD-EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV- 311 (541)
Q Consensus 234 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 311 (541)
...|.+..+. +|. ...|+.+...+-..|+...|.+.|+++++.+.. -...|-.|...|...+.+++|...|.+..
T Consensus 204 ~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 204 KACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 7766666654 343 234555555566667777777777766655422 14456666777777777777776666552
Q ss_pred -CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHH
Q 048358 312 -ER-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY 389 (541)
Q Consensus 312 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 389 (541)
.| ...++..+...|-.+|..+-|+..|++.++.. +--...|+.+..++-..|++.+|.+.|.....- .+......
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam 357 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAM 357 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHH
Confidence 23 34556666666666677777777777666643 223456677777776667777777777766653 23445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+.|...|...|.+++|..+|... .+.|. ...++.|...|.++|++++|+..|++++.+.|.-.++|..+++.|-..|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 66777777777777777766665 44554 35566666667777777777777777777777766677777777777777
Q ss_pred HHHHHHHHHHhhh
Q 048358 468 WEDVSRMRKLIRS 480 (541)
Q Consensus 468 ~~~A~~~~~~m~~ 480 (541)
.+.|...+.+...
T Consensus 438 v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.3e-21 Score=203.40 Aligned_cols=471 Identities=12% Similarity=0.033 Sum_probs=266.1
Q ss_pred cChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHH
Q 048358 25 ENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQ 102 (541)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 102 (541)
++...+...++..++.. +-++.++..+...|.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..++++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 45556667777777665 44688889999999999999999999999886 4434444444333 888899999999
Q ss_pred hhhCCCCCCCCCCCcccHHHHHHH--------HhccCCchHHHHHHHHHHHhCCCCchhhHHHH-HHHHHcCCChHHHHH
Q 048358 103 MLRDPRTGSLILPDKFTLPFVIKS--------CAGLLCPSLGKQIHAHVCKFGLKSHSITENAL-LDLYGKCDELIEAHK 173 (541)
Q Consensus 103 m~~~~~~~~~~~p~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~ 173 (541)
+.... |-+..++..+... |.+. +.|.+.++ .....+.|+..+.... ..+|.+.|++++|++
T Consensus 134 l~~~~------P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 134 LLAQQ------KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHhC------CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 98875 3444455444444 3333 44555444 3332333334434433 677777777777777
Q ss_pred HHhhcCCC---ChhhHHHHHHHHHh-cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC
Q 048358 174 VFEEMTDR---DIVAWNNLISGYAR-LGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIE-PD 248 (541)
Q Consensus 174 ~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~ 248 (541)
++.++.+. +......+...|.+ .++ +++..++....+.++..+..++..|.+.|+.++|.++++++...-.. |.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 77776652 22334445555555 244 66666655444455666666666666666666666666665322110 11
Q ss_pred hHHHHHH------------------------------HHH----------------------------------------
Q 048358 249 EISIVSV------------------------------LPA---------------------------------------- 258 (541)
Q Consensus 249 ~~~~~~l------------------------------l~~---------------------------------------- 258 (541)
..++..+ +..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111000 000
Q ss_pred -----------------------HHccCChHHHHHHHHHHHHh-C-CCccHhHHHHHHHHHHhcCC--------------
Q 048358 259 -----------------------CAQLGSLELGEWIHMYCDKN-H-LLRRTVICNALIEMYIKCGC-------------- 299 (541)
Q Consensus 259 -----------------------~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~-------------- 299 (541)
....|+.++|.+++...... + ...+......|+..|.+.+.
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 11223333344443333321 0 11122233344444444433
Q ss_pred -------------------------------------------------HHHHHHHHHccCC--CChhHHHHHHHHHHhc
Q 048358 300 -------------------------------------------------INQASQLFDQMVE--RDVVSWSTVIGGLANH 328 (541)
Q Consensus 300 -------------------------------------------------~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 328 (541)
.++|...+.+... |+......+...+...
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3333333322211 1111111112222345
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNI 408 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 408 (541)
|++++|...|+++... +|+...+..+..++...|++++|...++...+.. +++...+..+.....+.|++++|...
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555554332 3333334444455555566666666665555421 22222222233333344666666666
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 409 IEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 409 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
+++. ...|+...+..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..+++..+
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------- 671 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK------- 671 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------
Confidence 6655 45566666666666666667777777777776666666666666666666666777777666666544
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.+|+++.++..++.++..+|+.++|.+.++++|+
T Consensus 672 -------------------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 672 -------------------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred -------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999999888764
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.9e-21 Score=195.22 Aligned_cols=419 Identities=13% Similarity=0.041 Sum_probs=286.5
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 50 TKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 50 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
......|.+.|+++.|...|++..+ |+...|..+..+|.+.|++++|++.++..++.. +.+...+..+..++
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~------p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD------PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHH
Confidence 3445566667777777777776554 566666677777777777777777777777654 44556677777777
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 048358 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFD 207 (541)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (541)
...|++++|..-+..+...+...+.. ...++..+........+...++.-+ ++...+..+.. +...........-++
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 77777777776666554443111111 1111111111111223333332221 12222222222 211111111111111
Q ss_pred cCCCCCc---chHHHHHHHH---HhcCChHHHHHHHHHHHHCC-CCC-ChHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 048358 208 KMPYTTI---VSWTAMISGY---THIGSYAEALDVFRQMQMVG-IEP-DEISIVSVLPACAQLGSLELGEWIHMYCDKNH 279 (541)
Q Consensus 208 ~~~~~~~---~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 279 (541)
.....+. ..+..+...+ ...+++++|.+.|++....+ ..| ....+..+...+...|+++.|...++...+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1111111 1111111111 23478999999999998764 234 34567777777889999999999999998764
Q ss_pred CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048358 280 LLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL 356 (541)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (541)
+.....|..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 33466788899999999999999999998744 357789999999999999999999999999875 5567788888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHH
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-K-------IWGSLLSS 427 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~ 427 (541)
..++.+.|++++|+..|+...+. .+.+...++.+...+...|++++|++.|++. .+.|+. . .+......
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 99999999999999999999874 3566788999999999999999999999986 444431 1 11222222
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...|++++|.+.++++++++|++...+..++.++.+.|++++|.+.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444699999999999999999999989999999999999999999999998654
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=9.4e-20 Score=189.70 Aligned_cols=479 Identities=8% Similarity=-0.031 Sum_probs=328.5
Q ss_pred CCCChhhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHH--------HHcCCChHHHHHHHhcCCCCC--cch
Q 048358 10 IKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDV--------CNSGGDLAYASLLFKQVKEPN--VFL 79 (541)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~ 79 (541)
..|+...+...+........+..+++.+++.. +-+..++..+... |.+.+....+++ .+...|+ ...
T Consensus 107 ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~v 183 (987)
T PRK09782 107 RHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKT 183 (987)
T ss_pred cCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHH
Confidence 45665666666666666666667777777665 3345566666665 666666666665 2223333 333
Q ss_pred -HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCchhhHHH
Q 048358 80 -YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG-LLCPSLGKQIHAHVCKFGLKSHSITENA 157 (541)
Q Consensus 80 -~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (541)
.-.+.+.|.+.|++++|+.+++++.+.+ +.+..-...+..++.. .++ +.+..++.. .++.+......
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~------pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN------TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 3344788899999999999999999886 4555556667777776 366 666666442 34457788889
Q ss_pred HHHHHHcCCChHHHHHHHhhcCC-----CChhhHH------------------------------HHHHHHHh-------
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTD-----RDIVAWN------------------------------NLISGYAR------- 195 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~------------------------------~l~~~~~~------- 195 (541)
++..|.+.|+.++|.++++++.. |...+|. .++..+.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999998864 2222211 11333333
Q ss_pred --------------------------------------------------------cCCHHHHHHHHhcCCC--CC----
Q 048358 196 --------------------------------------------------------LGQMKKARMLFDKMPY--TT---- 213 (541)
Q Consensus 196 --------------------------------------------------------~~~~~~A~~~~~~~~~--~~---- 213 (541)
.|+.++|.++|..... ++
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 3444444444444332 11
Q ss_pred cchHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHHC-CC-CC--ChHHHHHHHHHHHccCC
Q 048358 214 IVSWTAMISGYTHIGS---YAEALDV----------------------FRQMQMV-GI-EP--DEISIVSVLPACAQLGS 264 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~ 264 (541)
....+.++..|.+.+. ..++..+ +...... +. ++ +...+..+..++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 1122244444444433 2222221 1111110 11 22 34445555555554 67
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|..++++..
T Consensus 492 ~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 492 PGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred cHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888777776654 4443344445556789999999999998744 444566777888899999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 048358 343 RLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKI 420 (541)
Q Consensus 343 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~ 420 (541)
+.+ +++...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++. ...|+ ...
T Consensus 570 ~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 570 QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 875 444444444555556679999999999999874 467888999999999999999999999998 66674 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEE
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQE 500 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 500 (541)
+..+..++...|++++|+..++++++..|.++..+..++.++...|++++|+..+++..+
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-------------------- 705 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-------------------- 705 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------
Confidence 777878899999999999999999999999999999999999999999999999999865
Q ss_pred EEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 501 FVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 501 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
+.|+...+....+++..+......+.+.+
T Consensus 706 ------l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 706 ------DIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred ------cCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 35677777777777776666555544433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.6e-20 Score=190.47 Aligned_cols=419 Identities=11% Similarity=-0.011 Sum_probs=305.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHH
Q 048358 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALL 159 (541)
Q Consensus 80 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 159 (541)
+......+.+.|++++|+..|++.++. .|+...|..+..++...|+++.|...++..++.. +.+...+..+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a 201 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC-------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 445667788999999999999999876 6778889899999999999999999999999875 34567888899
Q ss_pred HHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048358 160 DLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDV 236 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 236 (541)
.+|...|++++|..-|..... .+......++..+........+...++.-. .+...+..+.. |....+......-
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999999999987765432 111111122222212112233444443322 23333333333 2222222222222
Q ss_pred HHHHHHCCCCCCh-HHHHHHHH---HHHccCChHHHHHHHHHHHHhC--CCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 237 FRQMQMVGIEPDE-ISIVSVLP---ACAQLGSLELGEWIHMYCDKNH--LLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 237 ~~~m~~~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
+....+ ..|.. ..+..+.. -....+++++|...|+.+.+.+ .+.....+..+...+...|++++|...|++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 221111 11211 11111111 1133568899999999998865 2334567888899999999999999999998
Q ss_pred CC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh
Q 048358 311 VE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387 (541)
Q Consensus 311 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 387 (541)
.+ | +...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.... .+.+..
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~ 434 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIF 434 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHH
Confidence 54 3 35578888899999999999999999998875 566788999999999999999999999999874 355677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH-------H
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL-------L 458 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------l 458 (541)
.+..+...+.+.|++++|+..|++. ...| +...+..+...+...|++++|+..|++++++.|.+...+.. .
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8888999999999999999999987 5556 46788889999999999999999999999998875433221 2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+..+...|++++|.+++++... ++|++..++..|++++.++|+.++|+..++++
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~--------------------------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALI--------------------------IDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2234457999999999998764 36778888999999999999999999998876
Q ss_pred C
Q 048358 539 I 539 (541)
Q Consensus 539 i 539 (541)
+
T Consensus 569 ~ 569 (615)
T TIGR00990 569 A 569 (615)
T ss_pred H
Confidence 5
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.3e-20 Score=181.50 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=186.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD---EISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIE 292 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (541)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+|..+.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 445555555555555555555555554321111 1234445555555555555555555555432 234555666666
Q ss_pred HHHhcCCHHHHHHHHHccCCCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048358 293 MYIKCGCINQASQLFDQMVERD--------VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG 364 (541)
Q Consensus 293 ~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 364 (541)
.+...|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 6666677777766666663321 1134556777788899999999999888764 445667778888899999
Q ss_pred cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 048358 365 FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEH 443 (541)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (541)
++++|.++|+++.... ......++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..++++
T Consensus 229 ~~~~A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 229 DYAAAIEALERVEEQD-PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CHHHHHHHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999988642 1122456788889999999999999999987 5567777778888889999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCccCCce
Q 048358 444 LLVLEPEDTGNYVLLSNIYAK---HGRWEDVSRMRKLIRSKSMKKTPGC 489 (541)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 489 (541)
+++..|++. .+..+...+.. .|+.+++..++++|.++++.+.|.+
T Consensus 308 ~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 308 QLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 999888865 45555555443 5689999999999998888777764
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=9.3e-19 Score=178.40 Aligned_cols=355 Identities=10% Similarity=-0.013 Sum_probs=203.5
Q ss_pred HcCCChHHHHHHHhcCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 57 NSGGDLAYASLLFKQVKE------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
.+..+++.---.|...++ .+......++..+.+.|++++|..+++...... +-+...+..++.+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~------p~~~~~l~~l~~~~l~~ 89 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA------KNGRDLLRRWVISPLAS 89 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC------CCchhHHHHHhhhHhhc
Confidence 344555555555555543 122333445566677777777777777777654 34445555566666667
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
|+++.|...++.+.+.. +.+...+..+...+...|++++|...+++.... .
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----------------------------~ 140 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----------------------------F 140 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------C
Confidence 77777777777777764 334556666667777777777777777665431 0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHH
Q 048358 211 YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNAL 290 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (541)
..++..+..+..++...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++...+..+
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l 218 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLA 218 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 1122334444444444555555555444443331 11111111112244445555555555444443322223333344
Q ss_pred HHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048358 291 IEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK----AIHLFHEMQRLKVPPNDITFIGLLSACAHT 363 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 363 (541)
...+...|++++|...+++... .+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 4555566666666666655532 234455556666666666664 677777776653 44555666777777777
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCCHHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKI-WGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|++++|...++...... +.+...+..+..++.+.|++++|...|+++ ...|+... +..+..++...|+.++|+..|
T Consensus 298 g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777776632 444555666777777777777777777766 34555433 333445567777777777777
Q ss_pred HHHhccCCCC
Q 048358 442 EHLLVLEPED 451 (541)
Q Consensus 442 ~~~~~~~~~~ 451 (541)
+++++..|++
T Consensus 376 ~~al~~~P~~ 385 (656)
T PRK15174 376 EHYIQARASH 385 (656)
T ss_pred HHHHHhChhh
Confidence 7777777664
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.4e-19 Score=184.37 Aligned_cols=347 Identities=10% Similarity=-0.026 Sum_probs=278.6
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 229 (541)
..++..+.+.|++++|..+++.... .+...+..++.+....|++++|.+.|+++.. .+...+..+...+...|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 4456778889999999999988865 3455677777888889999999999999863 355788889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
+++|...|+++.... +.+...+..+...+...|+++.|...++.+......+ ...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999998762 3345677788888999999999999999887765433 3344333 347889999999999998
Q ss_pred cCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHhhhhcC
Q 048358 310 MVER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE----GLMYFDSMKRDHH 381 (541)
Q Consensus 310 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~ 381 (541)
+.+. +...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...|+++.+.
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 7553 23344556678889999999999999999875 5567788889999999999986 89999999874
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
-|.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++.+.|++++|+..++++.+.+|.++..+..++
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3566788999999999999999999999988 55564 566777888899999999999999999999999877777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
.++...|++++|...+++..+..... ..+...++...+...+...+..+
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~---------------------~~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASH---------------------LPQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhh---------------------chhhHHHHHHHHHHHHHhcCCcc
Confidence 89999999999999999987764321 24455556666666666665544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.6e-18 Score=180.51 Aligned_cols=400 Identities=11% Similarity=0.032 Sum_probs=259.0
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~ 119 (541)
+.++....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|..+|++..+.. +.+...
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~------P~~~~a 85 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE------PQNDDY 85 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHH
Confidence 44566666777778888888888888887664 333457778888888888888888888887764 555666
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhc
Q 048358 120 LPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARL 196 (541)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 196 (541)
+..+..++...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 7777778888888888888888888764 33455 77778888888888888888888765 3 344555666667777
Q ss_pred CCHHHHHHHHhcCCCCCcc--------hHHHHHHHHHhc-----CCh---HHHHHHHHHHHHC-CCCCChHHHHHHHHHH
Q 048358 197 GQMKKARMLFDKMPYTTIV--------SWTAMISGYTHI-----GSY---AEALDVFRQMQMV-GIEPDEISIVSVLPAC 259 (541)
Q Consensus 197 ~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~-----g~~---~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~ 259 (541)
+..+.|.+.++.... ++. ....++...... +++ ++|++.++.+... ...|+...-
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~------- 235 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD------- 235 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH-------
Confidence 777777777776654 211 111111111111 112 3344444444432 111111000
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---h-hHHHHHHHHHHhcCChHHHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERD---V-VSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~ 335 (541)
........+..+...|++++|+..|+.+.+.+ + .....+...|...|++++|+
T Consensus 236 -----------------------~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 236 -----------------------YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred -----------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 00000111223345566667777666664421 1 11222455666777777777
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC----------CCCc---HhHHHHHHHHHHh
Q 048358 336 HLFHEMQRLKVPPN----DITFIGLLSACAHTGFWNEGLMYFDSMKRDHH----------IEHK---IEHYGCLVDLLGR 398 (541)
Q Consensus 336 ~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~ 398 (541)
.+|+++.... +.+ ......+..++...|++++|.++++.+..... -.|+ ...+..+...+..
T Consensus 293 ~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 293 SILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 7777765532 111 23344555566777777777777777665310 0122 2345567778888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.|++++|++.++++ ...| +...+..+...+...|++++|++.++++++..|+++..+..++..+.+.|++++|+.+++
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999988887 4445 567777788888889999999999999999899988888888888889999999999998
Q ss_pred HhhhCC
Q 048358 477 LIRSKS 482 (541)
Q Consensus 477 ~m~~~~ 482 (541)
++.+..
T Consensus 452 ~ll~~~ 457 (765)
T PRK10049 452 DVVARE 457 (765)
T ss_pred HHHHhC
Confidence 887754
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.2e-18 Score=179.45 Aligned_cols=408 Identities=10% Similarity=-0.015 Sum_probs=275.4
Q ss_pred hhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCC
Q 048358 15 DRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNH 91 (541)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g 91 (541)
.-+..|..-.+....+.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345566666778888888888777633 44556789999999999999999999999653 34566778888999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHH
Q 048358 92 LYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEA 171 (541)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 171 (541)
++++|+..+++..+.. +.+.. +..+..++...|+.+.|...++++++..+ .+...+..+..++...|..+.|
T Consensus 98 ~~~eA~~~l~~~l~~~------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 98 QYDEALVKAKQLVSGA------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred CHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999999875 55666 88888899999999999999999999753 3566666788888899999999
Q ss_pred HHHHhhcCC-CCh------hhHHHHHHHHH-----hcCCH---HHHHHHHhcCCC---CCcch---H----HHHHHHHHh
Q 048358 172 HKVFEEMTD-RDI------VAWNNLISGYA-----RLGQM---KKARMLFDKMPY---TTIVS---W----TAMISGYTH 226 (541)
Q Consensus 172 ~~~~~~~~~-~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~---~~~~~---~----~~l~~~~~~ 226 (541)
.+.++.... |+. .....++.... ..+++ ++|++.++.+.. .++.. + ...+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 999998876 221 11222222222 12234 677777776652 22211 1 111334567
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc---cHhHHHHHHHHHHhcCCHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIE-PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR---RTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 302 (541)
.|++++|+..|+++.+.+.+ |+. ....+...+...|++++|...++.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78999999999998876522 322 11223445666666666666666655432111 01223333334444444444
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 303 ASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND---ITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 303 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
|...++.+...++.... ++. ...-.|+. ..+..+...+...|++++|+++++++...
T Consensus 329 A~~~l~~~~~~~P~~~~-----------------~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 329 ALTVTAHTINNSPPFLR-----------------LYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHHHHhhcCCceEe-----------------ecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444321110000 000 00012332 24456667788889999999999988874
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.|.+...+..+...+...|++++|++.+++. ...|+ ...+......+...|++++|..+++++++..|+++.+
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4667778888888999999999999999887 56675 4566666667888899999999999999999988743
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=7.9e-20 Score=177.70 Aligned_cols=284 Identities=14% Similarity=0.039 Sum_probs=133.4
Q ss_pred HHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc---hhhHHHHHHHH
Q 048358 86 AYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSH---SITENALLDLY 162 (541)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~ 162 (541)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..+...|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3445566666666666666553 34445566666666666666666666666655321111 13445555566
Q ss_pred HcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc--------chHHHHHHHHHhcCChH
Q 048358 163 GKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI--------VSWTAMISGYTHIGSYA 231 (541)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~ 231 (541)
.+.|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+...++ ..+..+...+...|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 666666666666665543 2233444444444444444444444444422110 12333444455555555
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 048358 232 EALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV 311 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 311 (541)
+|...|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 112233334444444445555555544444443222222334444444444444444444444442
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhhh
Q 048358 312 --ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH---TGFWNEGLMYFDSMKR 378 (541)
Q Consensus 312 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 378 (541)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+..++..+++.+.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 133333344444444444444444444444443 2444444444433332 2344444444444443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.3e-16 Score=163.16 Aligned_cols=420 Identities=8% Similarity=-0.038 Sum_probs=299.6
Q ss_pred HHHHHcCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc
Q 048358 53 IDVCNSGGDLAYASLLFKQVKEPNVF---LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG 129 (541)
Q Consensus 53 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 129 (541)
+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++..... +........+...+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~------n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM------NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC------CCCHHHHHHHHHHHHH
Confidence 34467889999999999998874444 47888889999999999999999987311 2223333333568888
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHh
Q 048358 130 LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFD 207 (541)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (541)
.|+++.|.++++++++..+ -+...+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++
T Consensus 115 ~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 8999999999999999763 3567777888899999999999999999987 444444334344444566656999998
Q ss_pred cCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHc---------cCChHH---HHH
Q 048358 208 KMPY--T-TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV--SVLPACAQ---------LGSLEL---GEW 270 (541)
Q Consensus 208 ~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~---------~~~~~~---a~~ 270 (541)
++.. | +...+..+..+..+.|-...|.++..+-... +.+...-.. ..+.-..+ ..++.. +..
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 8863 3 4567788888889999998988777663321 122211110 00111111 122323 344
Q ss_pred HHHHHHHh-CC-CccHhH----HHHHHHHHHhcCCHHHHHHHHHccCCC----ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 271 IHMYCDKN-HL-LRRTVI----CNALIEMYIKCGCINQASQLFDQMVER----DVVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 271 ~~~~~~~~-~~-~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
-++.+... +. ++.... ..-.+-++...|++.++++.|+.+..+ ...+-..+.++|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444432 11 222122 223455677889999999999998643 345667788999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC----------CCCcH---hHHHHHHHHHHhcCCH
Q 048358 341 MQRLK-----VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH----------IEHKI---EHYGCLVDLLGRAGRL 402 (541)
Q Consensus 341 m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~ 402 (541)
+.... .+++......|..++...+++++|..+++.+.+... -.|+. ..+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86643 123344457788899999999999999999987311 01221 2344567778889999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 403 DQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 403 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+|.+.++++ ...| |......+...+...|.+.+|++.++.+..++|++..+....+.++...|+|++|..+.+.+.+
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999998 4445 7788888888899999999999999998889999999999999999999999999999988765
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=6.1e-17 Score=158.53 Aligned_cols=428 Identities=14% Similarity=0.083 Sum_probs=317.1
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCC------CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEP------NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
.-+|.+.+.|.+.|--.|++..+..+...+... -..+|-.+.++|-..|++++|...|....+.. |+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-------~d 339 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-------ND 339 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------CC
Confidence 457888888888888889998888888776542 23457788888899999999999888887764 33
Q ss_pred --cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC----ChHHHHHHHhhcCCC---ChhhHH
Q 048358 117 --KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD----ELIEAHKVFEEMTDR---DIVAWN 187 (541)
Q Consensus 117 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~ 187 (541)
...+.-|.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+...+ |...|-
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3445557788888899999999999888874 456677777777777765 567777777777653 556777
Q ss_pred HHHHHHHhcCCHH------HHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCh------HH
Q 048358 188 NLISGYARLGQMK------KARMLFDK-MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV---GIEPDE------IS 251 (541)
Q Consensus 188 ~l~~~~~~~~~~~------~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~ 251 (541)
.+...+....-+. .|..++.. +....+...|.+...+...|++++|...|...... ...+|. .+
T Consensus 419 ~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 7766666544433 33333322 22456678899999999999999999999887655 223333 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhc
Q 048358 252 IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANH 328 (541)
Q Consensus 252 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (541)
--.+....-..++.+.|.+.|..+.+.... =+..|-.++.+....+...+|...++.... .|+..+..+...|...
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 334555566777899999999988876421 133444444344445778888888888744 5777888888899988
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 329 GKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAH------------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
.++..|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+. -|.|...-|.+.-.
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIV 655 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhh
Confidence 8888888877766543 223677777777775543 24578899999999874 36777778889999
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCHHHH
Q 048358 396 LGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
+...|++.+|..+|... .......+|..+.++|...|++..|+++|+...+.. .+++.+..+|++++.+.|.+.+|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999988 223456789999999999999999999999998754 45788999999999999999999
Q ss_pred HHHHHHhhhC
Q 048358 472 SRMRKLIRSK 481 (541)
Q Consensus 472 ~~~~~~m~~~ 481 (541)
.+.....+..
T Consensus 736 k~~ll~a~~~ 745 (1018)
T KOG2002|consen 736 KEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHh
Confidence 9988776654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=5e-16 Score=158.87 Aligned_cols=418 Identities=11% Similarity=0.033 Sum_probs=315.0
Q ss_pred cChhHHHHHHHHHHHhccCCch--hHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHH---HHHHHcCCChhHHHHH
Q 048358 25 ENLIELKKIHTQILKYLLSQSN--FLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAM---IRAYTNNHLYGLAINL 99 (541)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~~~ 99 (541)
++...+...+++.++.. |+. .++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+++
T Consensus 48 Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445555566665554 443 344 888999999999999999999987755554443 3467788999999999
Q ss_pred HHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 100 YKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 100 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
|+++.+.. +.++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.
T Consensus 125 y~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 125 WQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999986 556777778888899999999999999999875 4455555555555555677767999999997
Q ss_pred C--C-ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHH----HHHHHHHhc---------CC---hHHHHHHHHH
Q 048358 180 D--R-DIVAWNNLISGYARLGQMKKARMLFDKMPYT-TIVSWT----AMISGYTHI---------GS---YAEALDVFRQ 239 (541)
Q Consensus 180 ~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~l~~~~~~~---------g~---~~~A~~~~~~ 239 (541)
+ | +...+..+.....+.|-...|.++..+-+.- +...+. ..+.-.++. .+ .+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 6 4 5667788899999999999999998875521 111111 111111211 12 3445666666
Q ss_pred HHHC-CCCCChH-----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC
Q 048358 240 MQMV-GIEPDEI-----SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER 313 (541)
Q Consensus 240 m~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 313 (541)
+... +-.|... ...-.+-++...++..++.+.++.+...+.+....+-..+.++|...++.++|..+|.++..+
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 6542 2224322 223456678899999999999999999987766778899999999999999999999998442
Q ss_pred ---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHHhccCcHHHHH
Q 048358 314 ---------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-----------PPND---ITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 314 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~a~ 370 (541)
+......|.-+|...+++++|..+++.+.+.-. .||+ ..+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 222346788999999999999999999987321 1222 13345677788999999999
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.++++... -|-|......+.+.+...|.+.+|.+.++.. ...|+ ..+....+.++...+++++|..+.+.+.+..
T Consensus 437 ~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999874 4778899999999999999999999999877 56674 5677778888999999999999999999999
Q ss_pred CCCcchH
Q 048358 449 PEDTGNY 455 (541)
Q Consensus 449 ~~~~~~~ 455 (541)
|+++.+-
T Consensus 515 Pe~~~~~ 521 (822)
T PRK14574 515 PEDIPSQ 521 (822)
T ss_pred CCchhHH
Confidence 9987443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.7e-17 Score=158.69 Aligned_cols=434 Identities=11% Similarity=0.071 Sum_probs=222.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
.|+...+.|.+.|...|+++.+..+...+....... ..-...|-.+.+++-..|+++.|...|.+..+....--...
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~---~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK---SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 455555555555666666666666665555432100 11223455566666666666666666655555432111223
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcC----CHHHHHHHHhcCCCC---CcchHHHHHHHH
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARLG----QMKKARMLFDKMPYT---TIVSWTAMISGY 224 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 224 (541)
+..|...|.+.|+++.+...|+++.. | +..+...+...|...+ ..+.|..++.....+ |...|-.+...+
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33455566666666666666665543 2 2233344444444433 334455554444432 333444444444
Q ss_pred HhcCChHHHHHHHHHH----HHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCc------cHhHHHHHH
Q 048358 225 THIGSYAEALDVFRQM----QMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKN---HLLR------RTVICNALI 291 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~ 291 (541)
....-+ .++..|... ...+-++.....+.+.......|.++.|...|..+... ...+ +..+-..+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 333222 224444332 23333455555666666666666666666666555443 1111 111222345
Q ss_pred HHHHhcCCHHHHHHHHHccCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048358 292 EMYIKCGCINQASQLFDQMVERDVV---SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 368 (541)
.++...++.+.|.+.|..+.+..+. .|--++......+...+|..+++.....+ ..|+..+..+...+.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 5555555666666666666442221 22222222223355666666666655543 3344444445555556566666
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHh------------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGR------------AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 434 (541)
|..-|..+.+.....+|+.+.-.|.+.|.+ .+..++|+++|.+. ...| |...-+.+...++..|++
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc
Confidence 666555554432223444444444443332 23455666666655 3444 455556666666666777
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHH
Q 048358 435 EIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDI 514 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 514 (541)
.+|..+|.+..+-..+.+.+|..++.+|..+|+|-.|+++|+.....-. ..++..+
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~------------------------~~~~~~v 718 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY------------------------KKNRSEV 718 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc------------------------ccCCHHH
Confidence 7777777666665555566677777777777777777777666654422 2345566
Q ss_pred HHHHHHHHHHHhcccCCcccccc
Q 048358 515 FWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 515 ~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
...|++++.+-|+..++.+....
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 66777777776666665554443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.5e-16 Score=142.89 Aligned_cols=410 Identities=13% Similarity=0.101 Sum_probs=287.6
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCCC----CCcchH-HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc--
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVKE----PNVFLY-NAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK-- 117 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~-- 117 (541)
+-.+...|.+-|.......+|+..++-+.+ ||.... ..+...+.+.+++.+|+..|+..+.. .|+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq-------vpsink 272 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ-------VPSINK 272 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh-------ccccch
Confidence 344555566777778888999999988875 444332 23456678888999999999877765 3332
Q ss_pred c----cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC-------------
Q 048358 118 F----TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD------------- 180 (541)
Q Consensus 118 ~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 180 (541)
. ..+.+.-.+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+.++..+.|.+|..
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 2 2333444567889999999999998875 46766655666677778999999999988864
Q ss_pred ---CChhhHHH-----HHHHHHhcCC--HHHHHHHHhcC----CCCCc-------------chHHH--------HHHHHH
Q 048358 181 ---RDIVAWNN-----LISGYARLGQ--MKKARMLFDKM----PYTTI-------------VSWTA--------MISGYT 225 (541)
Q Consensus 181 ---~~~~~~~~-----l~~~~~~~~~--~~~A~~~~~~~----~~~~~-------------~~~~~--------l~~~~~ 225 (541)
|+....+. .+.-+.+.+. -++++-.--++ ..|+- ..+.. -..-+.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 12111111 1122222111 11221111111 12211 00111 122466
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChH---------------------HHHHH---------------HHHHHccCChHHHH
Q 048358 226 HIGSYAEALDVFRQMQMVGIEPDEI---------------------SIVSV---------------LPACAQLGSLELGE 269 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p~~~---------------------~~~~l---------------l~~~~~~~~~~~a~ 269 (541)
+.|+++.|+++++-.....-+.-.. .|..+ -+.....|++++|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 7788888877776665432111111 11100 01112357888898
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM---VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV 346 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 346 (541)
..+++.....-.-....|| +.-.+...|++++|+.+|-++ ...+..+...+...|-...+..+|++++.+.... +
T Consensus 511 ~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 8888888765444333444 445677889999999998776 4467778888889999999999999999887665 5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL 425 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 425 (541)
+.|+.....|...|-+.|+-..|.+.+-.--+ -+|.+..+...|...|....-+++|+.+|++. -++|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 77888899999999999999999998776665 36888999999999999999999999999998 6889999999998
Q ss_pred HH-HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 426 SS-CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 426 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.. +.+.|++.+|.++|+......|.+.+.+..|++.+...|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 87 5789999999999999999999999999999999888775
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=6.5e-15 Score=143.57 Aligned_cols=352 Identities=14% Similarity=0.170 Sum_probs=204.9
Q ss_pred CChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048358 166 DELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKM---PYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239 (541)
Q Consensus 166 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (541)
|++++|.+++.++.. .+..+|..|...|-+.|+.+++...+-.. .+.|...|..+.....+.|++.+|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444444433 23334444444444444444444433221 223334444444444455555555555555
Q ss_pred HHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh----HHHHHHHHHHhcCCHHHHHHHHHccCC---
Q 048358 240 MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV----ICNALIEMYIKCGCINQASQLFDQMVE--- 312 (541)
Q Consensus 240 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 312 (541)
.++.. +++...+---...|-+.|+...|...+.++.....+.+.. .-...+..+...++-+.|.+.+.....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44442 2232233333344444455555555554444443221211 111223334444444555555544422
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---------------------------CCCCCHHHHHHHHHHHhcc
Q 048358 313 --RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL---------------------------KVPPNDITFIGLLSACAHT 363 (541)
Q Consensus 313 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~l~~~~~~~ 363 (541)
.+...++.++..+.+...++.|......+... ++.++... ..++-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 12334555555555555555555555544431 12233333 1222233333
Q ss_pred CcHHHHHHHHHHhhhhc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDH-HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP---MKPDAKIWGSLLSSCRTYSNLEIAVI 439 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~ 439 (541)
...+....+........ ....+...|.-+.++|.+.|++.+|+.+|..+- ..-+...|..+..+|...|.+++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 33333333333333321 134456788999999999999999999999982 22357789999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHH
Q 048358 440 AMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLE 519 (541)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 519 (541)
.|++++...|++.++...|+..+.+.|+.++|.+.+..+...+....+++.| +....+.....
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~-----------------~~e~ri~~~r~ 533 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW-----------------EPERRILAHRC 533 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc-----------------cHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987444333345544 55667778899
Q ss_pred HHHHHHhcccCCccccc
Q 048358 520 LLALHQDRAKDVIDIMY 536 (541)
Q Consensus 520 ~~~~~~~~~~~a~~~~~ 536 (541)
.++.++|+.++.+++..
T Consensus 534 d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 534 DILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 99999999888766543
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.6e-15 Score=141.93 Aligned_cols=276 Identities=13% Similarity=0.088 Sum_probs=215.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--ccHhHHHHHHHHHHhcCCHHHHHH
Q 048358 228 GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL--RRTVICNALIEMYIKCGCINQASQ 305 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 305 (541)
-+..+|+..|.+...+ +.-+......+..+|...+++++++++|+.+.+...- -+..+|.+.+--+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885544 2334455566778899999999999999988875421 356677766643332222221112
Q ss_pred HHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc
Q 048358 306 LFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK 385 (541)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 385 (541)
-+-.+....+.+|.++..+|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....++.|...|+..... .+.+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rh 488 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRH 488 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cchh
Confidence 2222334467899999999999999999999999998865 447788888888888889999999999988763 2334
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
-..|..+...|.++++++.|.-.|+++ .+.| +.+....+...+.+.|+.++|+++++++..++|.|+-.-...+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 455667888899999999999999988 7888 45666677777899999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
..+++++|+..++++++ +-|++..++.+||.+|.++|+.+.|..
T Consensus 569 ~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred hhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccchHHHH
Confidence 99999999999999876 468999999999999999998887754
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=5.5e-13 Score=130.41 Aligned_cols=500 Identities=12% Similarity=0.072 Sum_probs=330.1
Q ss_pred HHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHH
Q 048358 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK---EPNVFLYNAMIRAYTNNHLYGLA 96 (541)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A 96 (541)
++-+.++.+.+..+...+++.. +.+...|..|...|-..|+.+++...+-... ..|...|..+.......|++++|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 4446688889999999999877 5688899999999999999999998875543 35667899999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH----HHHHHHHcCCChHHHH
Q 048358 97 INLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN----ALLDLYGKCDELIEAH 172 (541)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~A~ 172 (541)
.-.|.+.++.. +++...+---...|-+.|+...|...+.++....++.|..-.. ..+..+...++-+.|.
T Consensus 227 ~~cy~rAI~~~------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 227 RYCYSRAIQAN------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHhcC------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999886 6676666666778889999999999999999876533333232 3455666777778888
Q ss_pred HHHhhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----C----------------------CcchHH---
Q 048358 173 KVFEEMTD-----RDIVAWNNLISGYARLGQMKKARMLFDKMPY----T----------------------TIVSWT--- 218 (541)
Q Consensus 173 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----------------------~~~~~~--- 218 (541)
+.++.... -+...++.++..+.+...++.|......+.. + +..+|.
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 88877664 2445778888888888888888776654421 1 111111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHH
Q 048358 219 -AMISGYTHIGSYAEALDVFRQMQMVGIEP--DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYI 295 (541)
Q Consensus 219 -~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (541)
.++-++.+....+....+........+.| +...|.-+..++...|++..|..++..+.......+..+|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 23334444555555555555555555333 445677788888888888888888888887766666778888888888
Q ss_pred hcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHhccC
Q 048358 296 KCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL--------KVPPNDITFIGLLSACAHTG 364 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~~~~~~l~~~~~~~g 364 (541)
..|.++.|...|..+..- +...--.|...+.+.|+.++|.+.+..+... +..|+..........+...|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888888888888887543 3334455666777888888888888875422 23344443334444455555
Q ss_pred cHHHHHHHHHHhhhh--------------------------------------------------------------cCC
Q 048358 365 FWNEGLMYFDSMKRD--------------------------------------------------------------HHI 382 (541)
Q Consensus 365 ~~~~a~~~~~~~~~~--------------------------------------------------------------~~~ 382 (541)
+.++-+.+-..|... .++
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 544322221111100 000
Q ss_pred CCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC-C----CCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----
Q 048358 383 EHK--IEHYGCLVDLLGRAGRLDQALNIIEEM-P----MKPDA---KIWGSLLSSCRTYSNLEIAVIAMEHLLVL----- 447 (541)
Q Consensus 383 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 447 (541)
..+ ...+.-++..+.+.|++++|+.+...+ . ..++. ..-...+.++...+++..|...++.++..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 000 122345666778888899998887776 1 12222 12233445567888999999998888876
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEE---------EEcCEEEEEEeCCCCCCChhHHHHHH
Q 048358 448 EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI---------EVNNEVQEFVSGDDTKPFLKDIFWLL 518 (541)
Q Consensus 448 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~p~~~~~~~~l 518 (541)
+|--...|++..+.+.+.|+-.--.+.+......+...++....+ ....++..+...-..+|++|-+-..|
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 565566777666666666665555555555444433332221111 11222333333337899999999988
Q ss_pred HHHHHHHh
Q 048358 519 ELLALHQD 526 (541)
Q Consensus 519 ~~~~~~~~ 526 (541)
|-.+-++.
T Consensus 781 glafih~a 788 (895)
T KOG2076|consen 781 GLAFIHLA 788 (895)
T ss_pred HHHHHHHH
Confidence 88776544
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=5.3e-12 Score=119.13 Aligned_cols=365 Identities=12% Similarity=0.089 Sum_probs=239.9
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHh
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISGYAR 195 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 195 (541)
||..-...|...+.++-+..+|...++. ++.+...|...+..--..|..++-..+|++... | ....|-.....+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 3333444444444444444444444443 222334444444443444555555555544433 2 23344444555555
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHH
Q 048358 196 LGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIH 272 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 272 (541)
.|++..|..++.+.-+ .+...|-+-+.....+.++++|..+|.+.... .|+...|..-+..-...+..++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 6777777766665542 23345666666666777777777777776643 566666666666666667777777777
Q ss_pred HHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 048358 273 MYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN 349 (541)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 349 (541)
++..+.- +.-...|-.+.+.+.+.++.+.|.+.|..-.+ | .+..|-.|...--+.|..-.|..+|++..-.+ |-|
T Consensus 675 Ee~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 675 EEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 7766642 22244666777777777777777777766544 3 34456666666666777777877877777666 666
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 429 (541)
...|...|+.-.+.|+.+.|..+..+..+. .+.+...|..-|....+.++-......+++.. .|+.....+...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 777777777777778888887777777764 36666677777777777777666666666554 45566666777788
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEE
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEV 494 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 494 (541)
...++++|.+-|+++++.+|++.++|..+-..+.+.|.-++-.+++++.... .|..|..|+-+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 8899999999999999999999999999999999999999999999988654 34555556433
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.1e-13 Score=123.98 Aligned_cols=388 Identities=12% Similarity=0.090 Sum_probs=257.1
Q ss_pred CcchhhhcCCCCChhhHHHHHHhc---cCh--hHH--H-------------------HHHHHHHHhccCCchhHHHHHHH
Q 048358 1 MAARIGALSIKELEDRFVPILQSC---ENL--IEL--K-------------------KIHTQILKYLLSQSNFLVTKMID 54 (541)
Q Consensus 1 ~~~~m~~~g~~~~~~~~~~~l~~~---~~~--~~~--~-------------------~~~~~~~~~~~~~~~~~~~~l~~ 54 (541)
++.+|++.|+......-..+++-- .+. .-+ + .+-+ +.-.-.+.+..++..+|.
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~PKT~et~s~mI~ 215 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLPKTDETVSIMIA 215 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcCCCchhHHHHHH
Confidence 367899999988888766666531 111 101 1 1112 222233567889999999
Q ss_pred HHHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 55 VCNSGGDLAYASLLFKQVKE----PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
.+|+-...+.|.+++++... -+..+||.+|.+-.- ....+++.+|....+ .||..|||.++++.++.
T Consensus 216 Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm-----~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 216 GLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM-----TPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc-----CCchHhHHHHHHHHHHh
Confidence 99999999999999988764 466778888865432 223778889998887 99999999999999999
Q ss_pred CCchH----HHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHH-HHHHHhhcCC------------CChhhHHHHHHHH
Q 048358 131 LCPSL----GKQIHAHVCKFGLKSHSITENALLDLYGKCDELIE-AHKVFEEMTD------------RDIVAWNNLISGY 193 (541)
Q Consensus 131 ~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~~~l~~~~ 193 (541)
|+++. |.+++.+|.+.|++|...+|..++..+.+.++..+ |..++.++.. .+..-|..-+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 97764 56788889999999999999999999999888744 4444444421 2445667777788
Q ss_pred HhcCCHHHHHHHHhcCCCC--------C---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc
Q 048358 194 ARLGQMKKARMLFDKMPYT--------T---IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 262 (541)
.+..+.+.|.++..-.... + ..-|..+..+.++....+.-...|+.|.-.-+-|+..+...++++....
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 8888888888877655421 1 1346667778888888999999999998887889999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh--cCChHHHHHHHHH
Q 048358 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN--HGKAHKAIHLFHE 340 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 340 (541)
+.++-.-+++..++..|...+.....-++..+++.. ..|+...-..+-....+ ..-.+.....-.+
T Consensus 447 ~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred CcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999998888775544443333333333322 11211111111111111 0111111222334
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH---HHHHHHHhcCCHHHHHHHHHhC
Q 048358 341 MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG---CLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
|.+..++| ...+.++-.+.+.|..++|.++|..+.+.+.-.|.....+ .+++.-.+..+...|...++-+
T Consensus 515 ~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 515 QRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444333 3445555566777888888887777755443334333344 4555556667777777777766
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=9.8e-17 Score=147.68 Aligned_cols=254 Identities=17% Similarity=0.201 Sum_probs=58.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV-SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (541)
+...+.+.|++++|++++++......+|+...|- .+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455556666666666664433332123322222 2222333444555555555555443322 23334444443 3444
Q ss_pred CHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 299 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
++++|.+++....+ +++..+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|+..+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444443311 233344444444444455555555544443321 123333444444444445555555555555
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
..+.. |.+......++..+...|+.+++.++++.. ....|...+..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 44421 223444444444444445544444444433 11122333444444444445555555555555544455555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
....++.++.+.|+.++|.++.++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555555555555555544443
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3e-12 Score=114.83 Aligned_cols=69 Identities=9% Similarity=-0.089 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC---CCCcchHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 416 PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE---PEDTGNYV---LLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
-.....+...-.+.+.|..++|.+++....+.+ |..+ ..+ -+.+.-.+.++..+|..+++-|...+...
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p-~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP-LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 345556666666778888888888888775433 3322 333 34444556677888888888887666543
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-13 Score=124.28 Aligned_cols=366 Identities=11% Similarity=0.058 Sum_probs=276.5
Q ss_pred CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH-HHHHHHHHh
Q 048358 148 LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSW-TAMISGYTH 226 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l~~~~~~ 226 (541)
...|...+-.....+-+.|..+.|...|......-+..|.+.+....-..+.+.+..+...+...+...- -.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445555555556667788888899888887765555566555555555556665555545443322211 124456666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--ccHhHHHHHHHHHHhcCCHHHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL--RRTVICNALIEMYIKCGCINQAS 304 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 304 (541)
....+++..-.......|++-+...-+....+.-...++++|+.+|+++.+...- .|..+|..++-.-....++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7788888888888888887666666666666677889999999999999988422 35667776663333222222222
Q ss_pred HHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC
Q 048358 305 QLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH 384 (541)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 384 (541)
...-.+-+--+.|..++.+-|.-.++.++|...|++..+.+ |.....|+.+.+-|....+...|++-++...+- -|.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~ 396 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR 396 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch
Confidence 22223344456677888888999999999999999999976 556677888888999999999999999999974 377
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
|-..|-.|..+|.-.+...=|+-+|++. ..+| |...|..|..+|.+.++.++|+..|+++...+..+...+..|++.|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 8889999999999999999999999998 6777 7899999999999999999999999999998877888999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
.+.++.++|...+++..+.-. ......|+...+..-|++-+...++.++|..+.
T Consensus 477 e~l~d~~eAa~~yek~v~~~~-------------------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSE-------------------LEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHH-------------------hhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 999999999999998765310 011256777778777999888999888887644
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=5.2e-14 Score=135.51 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=133.9
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIH 336 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 336 (541)
.+.|+++.+...+..+.+....+...........+...|+++.|...++.+.+ | ++.....+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555555555555554432111111111224555666666666666665533 2 44455556666666666666666
Q ss_pred HHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 048358 337 LFHEMQRLKVPPND-------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNII 409 (541)
Q Consensus 337 ~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 409 (541)
++..+.+.+..+.. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666665432211 12222233333334445555555555442 2445555666666666667777766666
Q ss_pred HhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCc
Q 048358 410 EEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 410 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 488 (541)
++. ...|+.... ++.+....++.+++.+..++..+..|+|+..+..++..+.+.|+|++|.+.|++..+.
T Consensus 287 ~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------- 357 (398)
T PRK10747 287 LDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------- 357 (398)
T ss_pred HHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 665 333444222 2223334466666666666666666666666666777777777777777666666542
Q ss_pred eeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+|++ ..+..|+.++.++|+.++|.+.+.+.
T Consensus 358 -------------------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 -------------------RPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -------------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3443 33456666666666666666555543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=2.7e-16 Score=144.75 Aligned_cols=252 Identities=14% Similarity=0.182 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-C----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc
Q 048358 188 NLISGYARLGQMKKARMLFDKM-P----YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL 262 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~-~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 262 (541)
.+...+.+.|++++|.++++.. . ..|+..|..+.......++++.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 4577888999999999999543 2 2355677777888888999999999999998765 2245556666666 788
Q ss_pred CChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC-----CCChhHHHHHHHHHHhcCChHHHHHH
Q 048358 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV-----ERDVVSWSTVIGGLANHGKAHKAIHL 337 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 337 (541)
+++++|..++....+.. +++..+..++..+.+.++++++..+++.+. ..+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988766543 456677888899999999999999998852 34777889999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 048358 338 FHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP 416 (541)
Q Consensus 338 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 416 (541)
+++..+.. |.|......++..+...|+.+++.++++...+.. +.+...+..+..+|...|++++|+.+|++. ...|
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999875 4467788889999999999999999999988753 566677889999999999999999999998 4445
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 417 -DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 417 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
|+.+...+..++...|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 778888889999999999999999888764
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=3.2e-11 Score=113.99 Aligned_cols=428 Identities=12% Similarity=0.070 Sum_probs=312.3
Q ss_pred CCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchH
Q 048358 59 GGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSL 135 (541)
Q Consensus 59 ~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 135 (541)
....++|+-++.+..+ | +...|. +|++-.-++.|..+++...+.= +.+...|.+-...--..|+.+.
T Consensus 389 lE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~i------ptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREII------PTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred ccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHhcCCHHH
Confidence 3556667777777665 2 333333 4556666788888888887752 6777888877777778888888
Q ss_pred HHHHHHHHH----HhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHH
Q 048358 136 GKQIHAHVC----KFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD------RDIVAWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 136 a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (541)
...+++..+ ..|+..+..-|-.=...|-+.|..-.+..+...... .-..+|..-...|.+.+.++-|..+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 877766544 457777777777777777777777777766666543 2235888888889999999999988
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc
Q 048358 206 FDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR 282 (541)
Q Consensus 206 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (541)
|....+ .+...|...+..--..|..++-..+|++....- +-....+.......-..|+...|..++..+.+... .
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-n 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-N 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-C
Confidence 887764 344677777777777888889999999988762 33444455555666778999999999998888763 3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMV--ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
+...|-.-+........++.|+.+|.+.. .++...|.--+...-..+..++|.+++++.++. .+.-...|..+.+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 67788888888888999999999998874 456667777777777788899999999888775 233455677788888
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-MKP-DAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
...++++.|...|..-.+ ..|..+..|..|...-.+.|..-+|..++++.. ..| +...|...+..-.+.|+.+.|.
T Consensus 696 e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 888999999988887776 346677788888888888899999999998883 234 6788888888888999999999
Q ss_pred HHHHHHhccCCCC------------------------------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCc
Q 048358 439 IAMEHLLVLEPED------------------------------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 439 ~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 488 (541)
.++.++++--|.+ +.++...+..+....++++|.+.|.+..
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav--------- 844 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV--------- 844 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 8888888766655 4444444555555555555555555544
Q ss_pred eeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
+.+|+.+.++.-+=..+.+.|.
T Consensus 845 -----------------k~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 845 -----------------KKDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred -----------------ccCCccchHHHHHHHHHHHhCC
Confidence 3566666666666666666653
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.3e-14 Score=127.09 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.|+.-.|..-|+..+.. +...|--+...|....+.++....|.+..+.+ +-|+.+|..-.+...-.++++.|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444221 11123344444555555555555555555444 344444444444444445555555555
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC-
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE- 450 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 450 (541)
++...- -|.+...|-.+.-+..|.+++++++..|++. ++..-+..|+.....+..+++++.|.+.|+.++++.|.
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 555431 1223334444444444555555555555554 22122344444555555555555555555555555544
Q ss_pred -----CcchHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 451 -----DTGNYVLLSNIYAK-HGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 451 -----~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
++..+..=+.+..+ .+++..|..++++.. +++|....++..|+.+..+
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~--------------------------e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI--------------------------ELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH--------------------------ccCchHHHHHHHHHHHHHH
Confidence 33322221111111 144555555554432 5789999999999999999
Q ss_pred HhcccCCcccccccC
Q 048358 525 QDRAKDVIDIMYEDI 539 (541)
Q Consensus 525 ~~~~~~a~~~~~~~i 539 (541)
+|+.++|++.+++.+
T Consensus 550 ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSA 564 (606)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999999998764
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.6e-13 Score=122.01 Aligned_cols=216 Identities=14% Similarity=0.110 Sum_probs=180.0
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+.-.|+.-.+..-|+..++....+ ...|..+..+|...++.++-...|+...+ .|+.+|..-.+.+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 345678888999999998876554 33477788889999999999999998844 37778998888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM 414 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 414 (541)
.=|++.+... +-+...|..+..+..+.+.++++...|++..++ +|.-+..|+.....+..++++++|.+.|+.. .+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999876 566778888888888999999999999999985 5777888999999999999999999999987 44
Q ss_pred CCC---------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 415 KPD---------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 415 ~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.|+ +.+-..++.. .=.+++..|.++++++++++|....+|..|+....+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222222222 223899999999999999999999999999999999999999999999864
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.1e-13 Score=133.96 Aligned_cols=286 Identities=13% Similarity=0.047 Sum_probs=199.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
...|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+..++..+.+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4568888888888777655 4443 333444566777788888888888876654333333444457888889999999
Q ss_pred HHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH---hccCcHHHHHHHHHHh
Q 048358 304 SQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG-LLSAC---AHTGFWNEGLMYFDSM 376 (541)
Q Consensus 304 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~---~~~g~~~~a~~~~~~~ 376 (541)
...++.+.+ | ++.++..+...+...|++++|.+.+..+.+.++. +...+.. -..++ ...+..+.+.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999888844 3 5667888888999999999999999999988743 3333321 11111 2222223333344444
Q ss_pred hhhc--CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH---HHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 377 KRDH--HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIW---GSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 377 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.... ..+.+...+..++..+...|++++|.+.+++. +..||.... ..........++.+.+.+.+++..+..|+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4321 11247788888999999999999999999888 555665421 22222234568889999999999999999
Q ss_pred Cc--chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 451 DT--GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 451 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
++ ....++++.+.+.|+|++|.+.|+..... +.+|+... +..|+.++.++|+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~------------------------~~~p~~~~-~~~La~ll~~~g~~ 386 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC------------------------KEQLDAND-LAMAADAFDQAGDK 386 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh------------------------hcCCCHHH-HHHHHHHHHHcCCH
Confidence 99 88889999999999999999999953221 13566554 66999999999999
Q ss_pred cCCccccccc
Q 048358 529 KDVIDIMYED 538 (541)
Q Consensus 529 ~~a~~~~~~~ 538 (541)
++|.+...+.
T Consensus 387 ~~A~~~~~~~ 396 (409)
T TIGR00540 387 AEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHH
Confidence 9988777654
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.3e-12 Score=117.87 Aligned_cols=395 Identities=14% Similarity=0.132 Sum_probs=272.3
Q ss_pred hHHHH---HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH-HHHHHHhccCCchHHHHHHHHHHHhCCCCch--
Q 048358 79 LYNAM---IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP-FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHS-- 152 (541)
Q Consensus 79 ~~~~l---l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-- 152 (541)
+|+.| ..-|..+....+|+..|+-..+... -|+..... .+...+.+..++..|.+.++..+..-+..+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkm-----f~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ 274 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKM-----FPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDM 274 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccc-----cCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhh
Confidence 45444 4456667778899999998887765 66665443 3445677888899999999988876433333
Q ss_pred --hhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCCC----------------C
Q 048358 153 --ITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFDKMPY----------------T 212 (541)
Q Consensus 153 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~ 212 (541)
...+.+...+.+.|.++.|...|+...+ |+..+-..|+-++.--|+-++..+.|.+|.. |
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 3344455567889999999999999876 7777666667777778999999999988751 1
Q ss_pred CcchHHH-----HHHHHHhcC--ChHHHHHHHHHHHHCCCCCChHH-----HHH----------------HHHHHHccCC
Q 048358 213 TIVSWTA-----MISGYTHIG--SYAEALDVFRQMQMVGIEPDEIS-----IVS----------------VLPACAQLGS 264 (541)
Q Consensus 213 ~~~~~~~-----l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-----~~~----------------ll~~~~~~~~ 264 (541)
+....+. .++-.-+.+ +.++++-.-.++..--+.|+... ... -...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1122222 222222221 23333333333333333343211 000 1123678999
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHH------------------------------------HhcCCHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMY------------------------------------IKCGCINQASQLFD 308 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~A~~~~~ 308 (541)
++.|.+++.-..+..-+.-...-+.|-..+ ...|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 999999998877654332222222111111 13477888888888
Q ss_pred ccCCCChhHHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc
Q 048358 309 QMVERDVVSWSTVIG---GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK 385 (541)
Q Consensus 309 ~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 385 (541)
+....|...-.+|.. .+-..|+.++|++.|-++... +..+......+...|....+...|++++..... -+|.+
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPND 591 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCC
Confidence 888777665444443 466789999999999887654 245677788888999999999999999988875 56778
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
+.....|.+.|-+.|+-..|.+..-+- ..-| +..+..=|..-|....-.++++.+|+++.-+.|.-...-..++.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888999999999999999999875444 5445 56666666666777888899999999998888886655556677888
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 048358 464 KHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~ 481 (541)
+.|++.+|.++++....+
T Consensus 672 rsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 899999999999998765
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.5e-14 Score=133.64 Aligned_cols=276 Identities=14% Similarity=0.093 Sum_probs=219.4
Q ss_pred CHHHHHHHHhcCCC--CCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHccCChHHHHH
Q 048358 198 QMKKARMLFDKMPY--TTI-VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP----DEISIVSVLPACAQLGSLELGEW 270 (541)
Q Consensus 198 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~ 270 (541)
+..+|...|...+. .|+ .+...+.++|...+++++|.++|+.+.+. .| +..+|.+.+..+-.. .+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHHH
Confidence 45788888888542 233 55667889999999999999999999875 33 556777777654332 2222
Q ss_pred HHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 048358 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP 347 (541)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 347 (541)
.+.+-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+....++|.|...|+..+... +
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 2222222222456889999999999999999999999999664 45688888888899999999999999987654 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 425 (541)
-+-..|..+.-.|.+.++++.|.-.|+++..-+ |.+......+...+.+.|+.++|+.+++++ ..+| |+..-...+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 344567778889999999999999999998743 556777788888999999999999999998 4555 555556666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|--+.+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778889999999999999999999999999999999999999999998777765543
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6.4e-12 Score=114.18 Aligned_cols=178 Identities=13% Similarity=0.122 Sum_probs=89.0
Q ss_pred HcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc-ccHHHHHHHHhccCC
Q 048358 57 NSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK-FTLPFVIKSCAGLLC 132 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~ 132 (541)
...+++..|+.+|++... .+...|-..+..=.++.....|..++++.... -|-+ ..|..-+..--..|+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-------lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-------LPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHhcc
Confidence 334455555555555544 34444555555555555555566666555543 2222 222223333334455
Q ss_pred chHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT--DRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
...|.++|+.-.+ ..|+...|.+.++.=.+...++.|..++++.. .|++.+|.....--.++|+...|..+|+...
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555555544 34555555555555555555555555555543 2555555555555555555555555555443
Q ss_pred C------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 211 Y------TTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 211 ~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
. .+...+.++...-.++..++.|.-+|+-.+++
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 01123444444444445555555555555443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.9e-12 Score=116.63 Aligned_cols=437 Identities=12% Similarity=0.044 Sum_probs=296.3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhc--CCCCCcchHHHHHHHHHcCCChhHHHHHHHH----hhhCCC---C-CCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQ--VKEPNVFLYNAMIRAYTNNHLYGLAINLYKQ----MLRDPR---T-GSL 112 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~---~-~~~ 112 (541)
.-|+...--+++++.-.|+...|..+... +.+.|.........++.+..++++|+.++.. +....- . +..
T Consensus 46 ~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 46 TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 34555555677888888888888877754 3457777888888888899999999999882 211100 0 000
Q ss_pred CCCCccc----HHHH-------HHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 048358 113 ILPDKFT----LPFV-------IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR 181 (541)
Q Consensus 113 ~~p~~~~----~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (541)
+.+|..- -+.- ...+....+.++|...+.+.+...+. .-..+..++....-. ..+-..+|+..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt--~~Ee~~ll~~l--- 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLT--AQEEFELLESL--- 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcc--hhHHHHHHhcc---
Confidence 0111111 0111 11223334555566565555443211 112222222222211 11222333321
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcC--------------------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKM--------------------PYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
+..... ..+.+.-..+|+-. .+.++.....-..-+...+++.+..++++...
T Consensus 200 ~~a~~~--------~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 200 DLAMLT--------KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred cHHhhh--------hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 111100 00111111111100 02234445555667778899999999999998
Q ss_pred HCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCCh---hHH
Q 048358 242 MVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV---VSW 318 (541)
Q Consensus 242 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~ 318 (541)
+.. ++....+..-|.++...|+...-.-+-..+++.- |..+.+|-++.-.|.-.|+..+|++.|.+...-|. ..|
T Consensus 272 e~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaW 349 (611)
T KOG1173|consen 272 EKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAW 349 (611)
T ss_pred hhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHH
Confidence 764 6677777777888888888877777766666653 55678899999999999999999999998855443 489
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
-.+...|+..|..++|+..|...-+. ++-....+.-+.--|.+.++++.|.+.|...... .|.|+...+-+.-....
T Consensus 350 l~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYT 426 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeeh
Confidence 99999999999999999999887664 1223333444556688899999999999999863 46677778888888888
Q ss_pred cCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 048358 399 AGRLDQALNIIEEMP--------MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 399 ~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (541)
.+.+.+|..+|+... .++ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.++..++-+|...|+++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 999999999998761 112 45678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 470 DVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
.|.+.|.+... +.|++..+-.+|+...+.
T Consensus 507 ~Aid~fhKaL~--------------------------l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALA--------------------------LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHh--------------------------cCCccHHHHHHHHHHHHh
Confidence 99999998754 467777777777776664
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.8e-12 Score=113.09 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=145.2
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCC
Q 048358 125 KSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR------DIVAWNNLISGYARLGQ 198 (541)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 198 (541)
.++......+++.+-.+.....|++.+...-+....+.-...|+|+|+.+|+++... |..+|..++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344455566677777777777777666665565666666777788888888877652 34455544433222222
Q ss_pred HHH-HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 199 MKK-ARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 199 ~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+.- |..++ .+.+=-+.|...+..-|.-.++.++|..+|++.++.+ +.....|+.+-+-|....+...|..-++.+++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 211 11111 1112223445555555666666677777777766553 33334455555556666666666666666665
Q ss_pred hCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048358 278 NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354 (541)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (541)
-. +.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|+.....| ..+...+.
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 44 34555666666666666666666666665522 355666666666666666666666666666655 33455666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.|...|.+.++.++|.+.|++..+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666666666666666666655544
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=2.9e-12 Score=123.46 Aligned_cols=245 Identities=10% Similarity=0.061 Sum_probs=112.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDEISIV--SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
.+.|+++.|...|.++.+. .|+..... .....+...|+++.|...++.+.+.. +.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444444432 33322221 11233444444444444444444433 2234444444555555555555
Q ss_pred HHHHHHccCCCC---hh--------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 303 ASQLFDQMVERD---VV--------SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 303 A~~~~~~~~~~~---~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
|.+++..+.+.. .. +|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 554444443211 11 1222222222333334444444443322 13344455555555555566666665
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
++++..+. +|+.. ..++.+....++.+++++.++.. +..|+ ...+..+...|.+.+++++|.+.|+++.+..|
T Consensus 285 ~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55555542 23332 11222223345555555555555 33342 33444555555666666666666666665555
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 450 EDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
++ ..+..++.++.+.|+.++|.+.+++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 334455566666666666665555543
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=5e-11 Score=108.53 Aligned_cols=399 Identities=12% Similarity=0.109 Sum_probs=302.7
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhH
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITE 155 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (541)
+...|-.....=..++++..|..+|++.+... ..+...|..-+.+-.+......|..+++.++..-+..| ..|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlW 144 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLW 144 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHH
Confidence 45566666666667888999999999998765 56667777778888889999999999999988643333 445
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFDKMP--YTTIVSWTAMISGYTHIGSYA 231 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 231 (541)
-..+.+=-..|++..|.++|++-.+ |+..+|++.|..-.+.+.++.|..++++.. .|++.+|-...+.-.+.|+..
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 5555555667999999999998765 999999999999999999999999999864 789999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc-HhHHHHHHHHHHhcCCHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEI----SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR-TVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
.|..+|....+. --|.. .+.+...-=.+...++.|..+|+.+++.-.... ...|..+...--+-|+.......
T Consensus 225 ~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 225 LARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 999999988764 22333 333333334567788999999998887643322 44566666555566665544443
Q ss_pred --------HHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH---HhccCc
Q 048358 307 --------FDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI-------TFIGLLSA---CAHTGF 365 (541)
Q Consensus 307 --------~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~---~~~~g~ 365 (541)
|+.++.. |-.+|--.+..-...|+.+...++|++.+.. +||-.. .|.-+=.+ -....+
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444 4456666777777789999999999998876 466332 22222222 235688
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHH----HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYG----CLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.+.+.++|+.+.+ -+|....|+. .......++.+...|.+++-.. |.-|...+|...|..-.+.++++....+
T Consensus 382 ~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 382 VERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999987 3555555544 3444456888999999998776 8889999999999998899999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
|++.++.+|.+..+|...+..-...|+++.|..+|+-..+++.-..
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999999999998887764333
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=1.4e-11 Score=119.52 Aligned_cols=277 Identities=10% Similarity=0.014 Sum_probs=134.6
Q ss_pred cCCChHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CCc--chHHHHHHHHHhcCChHHHHHH
Q 048358 164 KCDELIEAHKVFEEMTD--RD-IVAWNNLISGYARLGQMKKARMLFDKMPY--TTI--VSWTAMISGYTHIGSYAEALDV 236 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 236 (541)
..|+++.|.+.+.+..+ |+ ...+-.......+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544433 11 11222223344444555555555544321 221 1222234555556666666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH-------HHHHHHHHHhcCCHHHHHHHHHc
Q 048358 237 FRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI-------CNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..++..-......+...+.+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66665553 22334455555555666666666666666555543322211 11111111112223333444444
Q ss_pred cCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhhhhcCCC
Q 048358 310 MVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF---IGLLSACAHTGFWNEGLMYFDSMKRDHHIE 383 (541)
Q Consensus 310 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 383 (541)
.++ .++..+..+...+...|+.++|.+++++..+.. |+.... ..........++.+.+.+.++...+.. |
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--D 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--C
Confidence 433 255566666666666677777776666666643 232210 111112223455566666666655532 2
Q ss_pred CcH--hHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 384 HKI--EHYGCLVDLLGRAGRLDQALNIIEE--M-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 384 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233 4445566666666666666666662 2 445666555566666666666666666666554
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=2.8e-11 Score=108.17 Aligned_cols=275 Identities=14% Similarity=0.094 Sum_probs=160.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+..++.++.+.-..++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665555422 23444555555566666666666666666554445555555666666666666666665
Q ss_pred HHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 307 FDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND-------ITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 307 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+.++. ..++........+|.+.|++.+...++..+.+.|+-.+. .++..+++-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 55542 235556666666677777777777777766666643332 24555555555555555555566666
Q ss_pred hhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 377 KRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
..+ ...++..-.+++.-+.++|+.++|.++.++. +..-|.. ....-.+.+-++.+.-++..++..+..|++|..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 553 2334444456666666777777777666555 2222332 1222234566666666666666666666666667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
.+|+..|.+.+.|.+|...++...+.+ .+.+.+..++.++.++|+..+|.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~---------------------------~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR---------------------------PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC---------------------------CChhhHHHHHHHHHHcCChHHHHH
Confidence 777777777777777777766554432 123445666666666666655543
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.9e-10 Score=103.05 Aligned_cols=289 Identities=11% Similarity=0.064 Sum_probs=201.0
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChH
Q 048358 90 NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELI 169 (541)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 169 (541)
.|+|.+|..+..+-.+.+ ......|..-.++.-+.|+.+.+-+++.++.+....++...+-+........|+++
T Consensus 97 eG~~~qAEkl~~rnae~~------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 456666666665554443 23333444444555555666666666655555422344444444455555555555
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 048358 170 EAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE 249 (541)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 249 (541)
.|..-+++. ..|...++........+|.+.|++.+...++.+|.+.|.--|.
T Consensus 171 aA~~~v~~l----------------------------l~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 171 AARENVDQL----------------------------LEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred hHHHHHHHH----------------------------HHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 554443332 2234556677888888899999999999999999888755442
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHH
Q 048358 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLA 326 (541)
Q Consensus 250 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 326 (541)
.. .+ ....+|+.+++-....+..+.-...++..+. .++..-.+++.-+.
T Consensus 223 e~-----------------~~-----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 223 EA-----------------AR-----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI 274 (400)
T ss_pred HH-----------------HH-----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence 21 10 0134566677766666777777777777744 46777788888899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
+.|+.++|.++.++..+.+..|+ ....-.+.+.++...-++..+.-.+.++. ++..+.+|...|.+.+.+.+|.
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999988876666 22334566778888888888888876544 4466888999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 407 NIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 407 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
..|+.. +..|+..+|.-+..++.+.|+..+|.+..++.+.
T Consensus 349 ~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 349 EALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999877 7889999999999999999999999999988874
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.9e-11 Score=103.44 Aligned_cols=215 Identities=11% Similarity=0.019 Sum_probs=114.7
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCc--hhhHHHHHHHHHcC
Q 048358 89 NNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFG-LKSH--SITENALLDLYGKC 165 (541)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~ 165 (541)
-+.++++|+++|-+|.+.. +-+..+..+|.+.|.+.|..|.|+++++.+.++. ...+ ......|..-|...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcC------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence 3567888888888888764 5566677778888888888888888888887642 1111 12334566667777
Q ss_pred CChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc--------hHHHHHHHHHhcCChHHHH
Q 048358 166 DELIEAHKVFEEMTDRD---IVAWNNLISGYARLGQMKKARMLFDKMPYTTIV--------SWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 166 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~ 234 (541)
|-+|.|+++|..+.+.+ ..+...|+..|-...+|++|++.-+++.+-+.. .|.-|...+....+++.|.
T Consensus 121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777777776522 234445555666666666665555544322222 2333333444445555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
.++.+..+.+ +.....-..+-......|+++.|.+.++.+.+.+...-..+...|..+|...|+.++...++..+
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555442 11111112222333344444444444444444433333333344444444444444444444333
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=3e-11 Score=108.43 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=163.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788888889999999988887743 245677888888999999999999999988875 5566778888888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 437 (541)
+...|++++|...++........+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998864222334556777888999999999999999887 4445 466788888889999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998877543
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=8.6e-10 Score=108.09 Aligned_cols=455 Identities=14% Similarity=0.086 Sum_probs=252.3
Q ss_pred chhhhcCCCCChhhHHHHHHhccChhHH--HHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchH
Q 048358 3 ARIGALSIKELEDRFVPILQSCENLIEL--KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLY 80 (541)
Q Consensus 3 ~~m~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (541)
..|..+||.|+..||..++..++..++. ..++..|.-...+....+++.++......++.+.+. +|.+.+|
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTY 86 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHH
Confidence 3567788888888888888777655544 236666666666667777888887777777776655 6778888
Q ss_pred HHHHHHHHcCCChhHHHHHHHH-hhh-------CCCCCCCCCCCcccHHHHHH-HHhccCCchHH--------HHHHHHH
Q 048358 81 NAMIRAYTNNHLYGLAINLYKQ-MLR-------DPRTGSLILPDKFTLPFVIK-SCAGLLCPSLG--------KQIHAHV 143 (541)
Q Consensus 81 ~~ll~~~~~~g~~~~A~~~~~~-m~~-------~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a--------~~~~~~~ 143 (541)
..++.+|...|+... .+..++ |.. .|+ -...-+ .++. .|+..-.++.. ..+++..
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gv------gs~e~~-fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGV------GSPERW-FLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhcc------CcHHHH-HHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 888888888887654 222222 211 121 111111 1111 11111111111 1222222
Q ss_pred HHhCC-CCchhhHHH---HHHHHHc-CCChHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---
Q 048358 144 CKFGL-KSHSITENA---LLDLYGK-CDELIEAHKVFEEMTD-RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI--- 214 (541)
Q Consensus 144 ~~~g~-~~~~~~~~~---l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 214 (541)
++.+. .|...-++. .++-+.. ...+++-........+ ++..++..++.+-...|+.+.|..++..|.+.+.
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22221 111111111 1111111 1223333344444443 6777788888888888888888888887765432
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHH-----------HHHHHH-----
Q 048358 215 -VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWI-----------HMYCDK----- 277 (541)
Q Consensus 215 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-----------~~~~~~----- 277 (541)
+-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.+...|....+... +..+..
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 223333333 677777777777888888888888887777776665554321110 000000
Q ss_pred --------------------hCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHhcCC
Q 048358 278 --------------------NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLANHGK 330 (541)
Q Consensus 278 --------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~ 330 (541)
.|+.....+|..... ....|.-+....+-..+..| ++..|..++..|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 011111222222221 12244444555544444222 34445444444432211
Q ss_pred ----------------------hHHHHHHHHHHHhCCCCCCHH----------------------------HHHHHHHHH
Q 048358 331 ----------------------AHKAIHLFHEMQRLKVPPNDI----------------------------TFIGLLSAC 360 (541)
Q Consensus 331 ----------------------~~~a~~~~~~m~~~~~~p~~~----------------------------~~~~l~~~~ 360 (541)
..+..+++... .||.. .-+.++..|
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 11111111111 22211 123344444
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCCHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-----MKPDAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~ 435 (541)
+..-+..+++..-+..... .-...|..|++.+....+.+.|..+.++.. +.-|..-+..+...+.+.+...
T Consensus 470 ~se~n~lK~l~~~ekye~~----lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDL----LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 4444445555444433331 112568899999999999999999999883 3346667788888899999999
Q ss_pred HHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 436 IAVIAMEHLLVLE---PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 436 ~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.+..++.++.+.- |........+.+.....|+.+.-.++.+-+...|+.-
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9999998887632 3334566778888889999999999999988888655
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.6e-10 Score=100.31 Aligned_cols=283 Identities=14% Similarity=0.153 Sum_probs=151.2
Q ss_pred CChHHHHHHHhhcCCCChhh---HHHHHHHHHhcCCHHHHHHHHhcCC-CCCc------chHHHHHHHHHhcCChHHHHH
Q 048358 166 DELIEAHKVFEEMTDRDIVA---WNNLISGYARLGQMKKARMLFDKMP-YTTI------VSWTAMISGYTHIGSYAEALD 235 (541)
Q Consensus 166 g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~~~A~~ 235 (541)
.+.++|.+.|-+|.+.|..+ .-+|.+.|-+.|..+.|+++.+.+. .||. .+...|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45666666666666543333 2344455555555555555555443 2322 122334444555555555555
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 048358 236 VFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV 315 (541)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 315 (541)
+|..+.+.+ .- -......|+..|-...+|++|.++-+++.+.+.
T Consensus 129 ~f~~L~de~-ef-----------------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 129 IFNQLVDEG-EF-----------------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHHHhcch-hh-----------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 555554332 11 133444556666666666666666555533322
Q ss_pred h--------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh
Q 048358 316 V--------SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387 (541)
Q Consensus 316 ~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 387 (541)
. .|.-+...+....+.+.|..++.+..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+ ..--..
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~e 250 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSE 250 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHH
Confidence 2 23334444445566777777777776654 3333334455566667777777777777776642 122234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH-HH--
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI-YA-- 463 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~-- 463 (541)
+...|..+|...|+.++...++.++ ...+....-..+........-.+.|...+.+-+...|.-. .+..++.. ..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~da 329 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccc
Confidence 4566677777777777777777665 3344444444444443344445555555555555555533 33333333 22
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCC
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
..|.+.+...+++.|..+.++..|
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcC
Confidence 234577777777777766554444
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=3.1e-08 Score=94.16 Aligned_cols=283 Identities=15% Similarity=0.194 Sum_probs=146.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------C---
Q 048358 188 NLISGYARLGQMKKARMLFDKMPYTTI-------VSWTAMISGYTHIGSYAEALDVFRQMQMVGIE----------P--- 247 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----------p--- 247 (541)
.+...|-..|+++.|..+|++..+.+- .+|......-.+..+++.|+++.+.....--. |
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 334444445666666666665543221 23333334444445555555555544321100 0
Q ss_pred ----ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC----CChh-HH
Q 048358 248 ----DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE----RDVV-SW 318 (541)
Q Consensus 248 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~ 318 (541)
+...|...+..--..|-++....+++.+.+..+.... ........+....-++++.++|++-+. |++. .|
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 1112222233333445555556666666655443222 222223333444456666666665433 3332 55
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHH
Q 048358 319 STVIGGLAN---HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA--CAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGC 391 (541)
Q Consensus 319 ~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 391 (541)
+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+.+ -.+.|....|+.+++++.. ++++. ...|+.
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni 627 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 555554443 2357888888888887 667665544444333 2244777788888888765 34443 345665
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH---HHHHHHhhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhc
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKPDAKIWG---SLLSSCRTYSNLEIAVIAMEHLLVLEPE--DTGNYVLLSNIYAKH 465 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 465 (541)
.|.-....=-......+|++. ..-|+...-. .+...-.+.|.++.|..+|....++-+| +...|...-..-.+.
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 554333222222233344443 2234443322 2333356788999999999888876644 566777777777788
Q ss_pred CCHHHHHHH
Q 048358 466 GRWEDVSRM 474 (541)
Q Consensus 466 g~~~~A~~~ 474 (541)
|+-+...++
T Consensus 708 GnedT~keM 716 (835)
T KOG2047|consen 708 GNEDTYKEM 716 (835)
T ss_pred CCHHHHHHH
Confidence 884444443
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8.8e-09 Score=96.89 Aligned_cols=432 Identities=14% Similarity=0.067 Sum_probs=262.1
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHH--HHH--HHcCCChhHHHHHHH
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAM--IRA--YTNNHLYGLAINLYK 101 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--l~~--~~~~g~~~~A~~~~~ 101 (541)
.++.+.+....++..+ +-+......-+-++.+.+++++|+.+.+.-... .+++.. =.+ +.+.+..++|+..++
T Consensus 27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 3444555556666555 556667777777888999999999877764421 122222 233 457899999999998
Q ss_pred HhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 048358 102 QMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR 181 (541)
Q Consensus 102 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (541)
-.- +.|..+...-...|.+.|++++|..+|+.+.+.+.+ +... ..-.++.+ .+-.-.+. +.+..+..
T Consensus 104 ~~~---------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~-~~r~nl~a-~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 104 GLD---------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDE-ERRANLLA-VAAALQVQ-LLQSVPEV 170 (652)
T ss_pred ccc---------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHH-HHHHHHHH-HHHhhhHH-HHHhccCC
Confidence 221 334447777778899999999999999999887633 2211 11111111 11111121 34444443
Q ss_pred ChhhHHH---HHHHHHhcCCHHHHHHHHhcC--------CCCCc----------chHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 182 DIVAWNN---LISGYARLGQMKKARMLFDKM--------PYTTI----------VSWTAMISGYTHIGSYAEALDVFRQM 240 (541)
Q Consensus 182 ~~~~~~~---l~~~~~~~~~~~~A~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m 240 (541)
...+|.. ....+...|++.+|+++++.. ...|. ..--.|..++...|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334433 344567799999999999877 21111 12334566778899999999999999
Q ss_pred HHCCCCCChHHHHHHHHHH---HccCC-hH-HHHHHHHHHHHhC-------CC--ccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 241 QMVGIEPDEISIVSVLPAC---AQLGS-LE-LGEWIHMYCDKNH-------LL--RRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 241 ~~~~~~p~~~~~~~ll~~~---~~~~~-~~-~a~~~~~~~~~~~-------~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
+... .+|........+-+ ....+ ++ .+...++...... +. --...+........-.+..+.+.++
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8875 55554333332222 11111 11 1111111111000 00 0011122222222334566777777
Q ss_pred HHccCCCC-hhHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH--------
Q 048358 307 FDQMVERD-VVSWSTVIGGLAN--HGKAHKAIHLFHEMQRLKVPPN-DITFIGLLSACAHTGFWNEGLMYFD-------- 374 (541)
Q Consensus 307 ~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~-------- 374 (541)
....+... ...+.+++....+ ...+.++.+++....+.. +-+ .......+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 77775543 3344555544332 234777888888776653 222 3444555667788999999999999
Q ss_pred HhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 375 SMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--------PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+... +..|. +...+...+.+.++.+.|..++.+. ...+. ..++..+...-.+.|+.++|..++++++
T Consensus 409 s~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 44432 33344 4467778888888877666666654 12222 2344444555567899999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 446 VLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+.+|++..+...++.+|++. +.+.|..+-+.+.
T Consensus 486 k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 99999999999999999988 7888888877664
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=5.3e-11 Score=106.81 Aligned_cols=194 Identities=12% Similarity=0.127 Sum_probs=164.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 34567788899999999999999999998765 5567788888999999999999999999998742 55667788899
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PM--KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (541)
..+...|++++|.+.+++. .. .| ....+..+...+...|++++|...++++++..|.++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987 21 12 34567778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccc
Q 048358 470 DVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMY 536 (541)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 536 (541)
+|...+++.... .|.++..+..++.++...|+.++|....+
T Consensus 187 ~A~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT--------------------------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999998653 24556667788899999998888776543
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.9e-09 Score=98.06 Aligned_cols=279 Identities=11% Similarity=0.022 Sum_probs=218.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMPYTTI---VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
+........+-+-..+++.+..++++...+.|+ ..+..-|.++...|+..+-..+=.++++.- +-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 444455556667778999999999998876554 456666778888898888777777777652 5566788888888
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
|...|+.++|.++|......+... ...|-.+...|.-.|..++|...+....+ .....+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999999887665333 44788999999999999999998877633 22233344556688889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-----HIEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
+.|.+..... |.|+...+-+.-.....+.+.+|..+|+.....- ..+-...+++.|..+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999988764 6677788888777778899999999999887310 111244568899999999999999999999
Q ss_pred hC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 411 EM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 411 ~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
.. ... .+..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|..+..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 87 333 478899999999999999999999999999999998766666665544
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.8e-09 Score=93.34 Aligned_cols=273 Identities=10% Similarity=-0.020 Sum_probs=187.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 048358 181 RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSW---TAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLP 257 (541)
Q Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 257 (541)
.|+.....+..++...|+.++|+..|++...-|+.+. ....-.+.+.|+.+....+...+.... +-+...|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 3556666777777777777777777776654444322 222334456677777777666665432 122222222233
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC--CC-ChhHHHHHHHHHHhcCChHHH
Q 048358 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV--ER-DVVSWSTVIGGLANHGKAHKA 334 (541)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a 334 (541)
.....++++.|..+-+..++.. +.+...+-.-..++...|+.++|.-.|+... .| +..+|..|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 3445567777777777666654 2345556556677888888888888888763 33 677899999999999999998
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 335 IHLFHEMQRLKVPPNDITFIGLL-SACA-HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.-+-+...+. ++.+..+...+. ..|. ...--++|..++++..+.. |.-....+.+...+.+.|+.++++.++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 8777765554 245556655552 3332 3344577888888887632 334556678888899999999999999887
Q ss_pred -CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 413 -PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 413 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
...||....+.|...+...+.+++|...|..++.++|.+..+...|
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 6778999999999999999999999999999999999986555444
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.6e-11 Score=103.65 Aligned_cols=227 Identities=13% Similarity=0.072 Sum_probs=184.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLAN 327 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 327 (541)
--..+.++|.+.|.+..|++.++...+. .|.+.||-.|...|.+..+...|+.+|.+-.+ | |+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3345677778888888888888777665 34566777788888888888888888888755 3 44444556777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.++.++|.++|+...+.. +.+......+...|.-.++++.|+.+|+++.+- | ..++..|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-G-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-c-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 889999999999988875 666777777778888889999999999999874 4 3466778888888888999999988
Q ss_pred HHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 408 IIEEM---PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 408 ~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
-|++. -..|+ ...|..+.......||+..|.+.|.-++..++++.++++.|+..-.+.|++++|..+++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88876 22343 46788898889999999999999999999999999999999999999999999999999877653
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=8.9e-09 Score=99.86 Aligned_cols=417 Identities=13% Similarity=0.042 Sum_probs=242.4
Q ss_pred cCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc
Q 048358 42 LSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF 118 (541)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~ 118 (541)
+.-++.+|..+.-++.++|+++.+-+.|++... .....|+.+...+...|....|+.+++.-....- -++|..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----QPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc----CCCcch
Confidence 445788999999999999999999999998765 4556788999999999999999999988765432 033444
Q ss_pred cHHHHHHHHh-ccCCchHHHHHHHHHHHhC--C--CCchhhHHHHHHHHHcC----C-------ChHHHHHHHhhcCCC-
Q 048358 119 TLPFVIKSCA-GLLCPSLGKQIHAHVCKFG--L--KSHSITENALLDLYGKC----D-------ELIEAHKVFEEMTDR- 181 (541)
Q Consensus 119 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~----g-------~~~~A~~~~~~~~~~- 181 (541)
.+...-+.|. +.+..+++..+-..++... . ...+..|..+.-+|... . ...++++.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 5555555554 4577777777777776621 1 11223333333333321 1 123344445544331
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 048358 182 --DIVAWNNLISGYARLGQMKKARMLFDKMP----YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD-EISIVS 254 (541)
Q Consensus 182 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 254 (541)
|..+...+.--|+..++++.|.+...+.. ..++..|..|.-++...+++.+|+.+.+..... -|+ ......
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchh
Confidence 22222222333444555555554444332 224445555555555555555555555554432 111 111111
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc---C-C--CChhHHHHHHHHHHhc
Q 048358 255 VLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM---V-E--RDVVSWSTVIGGLANH 328 (541)
Q Consensus 255 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~--~~~~~~~~l~~~~~~~ 328 (541)
-+..-...++.+.+......+...- ...- .....++-....+....+ . + ..+.++..+.......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~w--------e~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALW--------EAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHH--------Hhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 1111122333333333333222210 0000 000111111222222222 0 0 1122232222221111
Q ss_pred C---ChHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 329 G---KAHKAIHLFHEMQRLKVPPND--------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 329 ~---~~~~a~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
+ .++.. +...-+.|.. ..|......+.+.+..++|...+.+..+. .+-....|......+.
T Consensus 624 ~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 624 LKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHH
Confidence 1 11111 1111112221 23445566788889999999888888763 3556667777778889
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 398 RAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVI--AMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
..|..++|.+.|... -+.|+ +.....+...+...|+..-|.. ++..+++.+|.++++|..++.++.+.|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999988776 77785 5788889999999999888888 9999999999999999999999999999999999
Q ss_pred HHHHhhhC
Q 048358 474 MRKLIRSK 481 (541)
Q Consensus 474 ~~~~m~~~ 481 (541)
-|....+.
T Consensus 776 cf~aa~qL 783 (799)
T KOG4162|consen 776 CFQAALQL 783 (799)
T ss_pred HHHHHHhh
Confidence 99987664
No 63
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=3.4e-09 Score=91.11 Aligned_cols=386 Identities=12% Similarity=0.032 Sum_probs=226.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH-HH
Q 048358 80 YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN-AL 158 (541)
Q Consensus 80 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l 158 (541)
+++++..+.+..++..|++++..-.+.. +.+......+..+|....++..|...++++...- |...-|. --
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 4555555666677777777777666653 3355566666666677777777777777776542 3332222 12
Q ss_pred HHHHHcCCChHHHHHHHhhcCC-CChhhHHHHHH--HHHhcCCHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHH
Q 048358 159 LDLYGKCDELIEAHKVFEEMTD-RDIVAWNNLIS--GYARLGQMKKARMLFDKMP-YTTIVSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 234 (541)
...+.+.+.+..|+.+...|.+ ++...-..-+. ..-..+++..+..++++.+ +.+..+.+.......+.|++++|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 3455566777777777777765 22222222222 2234667777777777776 345556666666666777777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc-------------c---------------HhH
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR-------------R---------------TVI 286 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~ 286 (541)
+-|+...+-+---....|+..+ +..+.|+.+.|.++..+++++|+.. | +..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 7777776643233334555444 3445677777777777777765441 1 113
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVER-----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+...+ |....||..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 344445567889999999999999653 777776654322 2345555555556666654 455689999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCC---HH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG-RAGRLDQALNIIEEMPMKPDAKIWGSLLSS--CRTYSN---LE 435 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~--~~~~~~---~~ 435 (541)
+..-++.|-.++.+-....-.-.+...|+ |++++. ..-..++|.+-++.+...-....-...+.. -...++ ..
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99999999888765432110112333333 344443 345677777666655101001111111111 111111 22
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+++-|++.+++--| +....++.|.+..++..++++|..-.+
T Consensus 401 ~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 401 KAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 334445555554322 456677788899999999999987654
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=5.3e-10 Score=112.73 Aligned_cols=262 Identities=16% Similarity=0.075 Sum_probs=186.3
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 048358 213 TIVSWTAMISGYTH-----IGSYAEALDVFRQMQMVGIEPDEI-SIVSVLPACA---------QLGSLELGEWIHMYCDK 277 (541)
Q Consensus 213 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 277 (541)
+...|...+.+-.. .+.+++|...|++..+. .|+.. .+..+..++. ..+++++|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555566655322 23467899999999866 56543 4444443332 23457899999999988
Q ss_pred hCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048358 278 NHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354 (541)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (541)
.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHH
Confidence 76 44677888899999999999999999999844 3 45678888999999999999999999999875 22333334
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHhhcC
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWG-SLLSSCRTYS 432 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~~ 432 (541)
.++..+...|++++|...++++.... .+.+...+..+..++...|++++|...++++ +..|+..... .+...+...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 44555666899999999999987642 1224555778888999999999999999988 5556554444 4444566666
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
++|...++++.+..-..+.....+...|.-.|+-+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4888888887764422222223366677778888888877 8887765
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4e-08 Score=88.49 Aligned_cols=264 Identities=13% Similarity=0.054 Sum_probs=199.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHH
Q 048358 211 YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS-IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNA 289 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (541)
+.|+.....+..++...|+..+|+..|++.+.. .|+..+ .....-.+.+.|+.+....+...+.... ..+...|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 457888999999999999999999999998744 454433 2222233467788887777776665432 122333444
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 048358 290 LIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFW 366 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 366 (541)
-+......++++.|+.+-.+.++. ++..+-.-...+...+++++|.-.|+..+... |.+...|..|+.+|...|.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 445556678899999998888664 44455555567888999999999999988764 56788999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCcHhHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 048358 367 NEGLMYFDSMKRDHHIEHKIEHYGCLV-DLLG-RAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAME 442 (541)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 442 (541)
.+|.-.-+...+. ++.+..+.+.+. ..+. .-.--++|.+++++. .+.|+. ...+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999888877763 455666555542 2222 223358899999887 778874 566777778999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 443 HLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+.+...|+ ...+..|++.+...+.+.+|.+.|......
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99998877 568899999999999999999999887653
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=4.3e-10 Score=108.05 Aligned_cols=231 Identities=15% Similarity=0.154 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHh-----CC-CccH-hHHHHHHHHHHhcCCHHHHHHHHHccCC-------C--
Q 048358 250 ISIVSVLPACAQLGSLELGEWIHMYCDKN-----HL-LRRT-VICNALIEMYIKCGCINQASQLFDQMVE-------R-- 313 (541)
Q Consensus 250 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 313 (541)
.+...+...|...|+++.|...++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666666666666666666655543 11 1222 2344577788888888888888877732 1
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcC--C
Q 048358 314 --DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-----KV-PPNDI-TFIGLLSACAHTGFWNEGLMYFDSMKRDHH--I 382 (541)
Q Consensus 314 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 382 (541)
-..+++.|...|.+.|++++|..++++..+. |. .|... .++.+...|+..+.++.|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2346777888888889988888877765431 21 22322 356677778899999999999887765322 1
Q ss_pred CC----cHhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Q 048358 383 EH----KIEHYGCLVDLLGRAGRLDQALNIIEEM---------PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL- 447 (541)
Q Consensus 383 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 447 (541)
.+ -..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2467899999999999999999999887 1223 2467788888999999999999999887753
Q ss_pred ---CCC---CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 448 ---EPE---DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 448 ---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+|+ ...+|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 455888999999999999999999888753
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=7.5e-08 Score=91.59 Aligned_cols=434 Identities=12% Similarity=0.119 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhC-CCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 048358 63 AYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRD-PRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHA 141 (541)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (541)
+.++-.+-+| +..|-..+..+..+|+.......|+..+.. .+ ......|...+....+.+-++.+..+++
T Consensus 92 er~lv~mHkm----pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-----tqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 92 ERCLVFMHKM----PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-----TQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-----HhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 3444444444 357888888889999999999999987754 33 5566789999999999999999999999
Q ss_pred HHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC----------ChhhHHHHHHHHHhcCCHH---HHHHHHhc
Q 048358 142 HVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR----------DIVAWNNLISGYARLGQMK---KARMLFDK 208 (541)
Q Consensus 142 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~---~A~~~~~~ 208 (541)
..++.. | ..-+-.+..++..+++++|.+.+..+... +-..|..+.+..++.-+.- ....+++.
T Consensus 163 RYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 163 RYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 997743 3 33566788899999999999999988752 3346666666666544332 33445555
Q ss_pred CCCC--C--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC--------------------
Q 048358 209 MPYT--T--IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGS-------------------- 264 (541)
Q Consensus 209 ~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------------------- 264 (541)
+... | ...|++|..-|.+.|++++|..+|++..+. .-+..-|..+..+|+.-..
T Consensus 239 gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 239 GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 5432 2 258999999999999999999999998766 3344445555555443211
Q ss_pred --hHHHHHHHHHHHHhC-----------CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---C------ChhHHHHHH
Q 048358 265 --LELGEWIHMYCDKNH-----------LLRRTVICNALIEMYIKCGCINQASQLFDQMVE---R------DVVSWSTVI 322 (541)
Q Consensus 265 --~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~ 322 (541)
++....-|+.+...+ -+.++..|..-+. +..|+..+-...|.+..+ | -...|..+.
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 122222233332221 0112222222221 223445555555555522 1 223677888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc----------CCC------
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKRDH----------HIE------ 383 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~------ 383 (541)
..|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|..+++...... +.+
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 888889999999999988876542211 2334444444456677888888877765321 001
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHHH
Q 048358 384 HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLLS 459 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~ 459 (541)
.+...|..+++.....|-++....+++++ .++ .++.......-.+..+.-++++.++|++.+.+. |.-.+.|+..+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 12344666777777788888888888887 211 123222233333456667888999999888876 33455677666
Q ss_pred HHHHh---cCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccc
Q 048358 460 NIYAK---HGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMY 536 (541)
Q Consensus 460 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 536 (541)
..+.+ ..+.+.|..+|++..+ +-+|. ....+|.+.+.+-++.|....|+.+++
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~-----------------------~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPE-----------------------HAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHH-----------------------HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 65554 2368889999998887 33221 224567777777777777777776665
Q ss_pred c
Q 048358 537 E 537 (541)
Q Consensus 537 ~ 537 (541)
+
T Consensus 611 r 611 (835)
T KOG2047|consen 611 R 611 (835)
T ss_pred H
Confidence 4
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=2e-08 Score=97.56 Aligned_cols=365 Identities=12% Similarity=0.068 Sum_probs=221.2
Q ss_pred CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC--c---chHHH
Q 048358 148 LKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMPYTT--I---VSWTA 219 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~ 219 (541)
+..+..+|..|.-+..++|++..+-+.|++... .....|+.+...+.-.|.-..|..+++....+. + ..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456777788888888888888888888888765 345678888888888888888888887654322 2 22222
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHHC--CC--CCChHHHHHHHHHHHcc----C-------ChHHHHHHHHHHHHhCCCcc
Q 048358 220 MISGY-THIGSYAEALDVFRQMQMV--GI--EPDEISIVSVLPACAQL----G-------SLELGEWIHMYCDKNHLLRR 283 (541)
Q Consensus 220 l~~~~-~~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~ 283 (541)
.-..| -+.+..++++++-.+.... +. ......|..+.-+|... . ...++.+.++.+.+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 22223 3456677777776666552 11 11222333333333211 1 123556666666665533 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC-----------
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMV----ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVP----------- 347 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~----------- 347 (541)
+.+.-.+.--|+..++++.|....++.. ..++..|..|.-.+...+++.+|+.+.+..... |..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 2222334445677778888887777653 346778888888888888888888887765443 110
Q ss_pred -------CCHHHHHHHHHHHhc---------c--------------CcHHHHHHHHHHhh-------hhcC---------
Q 048358 348 -------PNDITFIGLLSACAH---------T--------------GFWNEGLMYFDSMK-------RDHH--------- 381 (541)
Q Consensus 348 -------p~~~~~~~l~~~~~~---------~--------------g~~~~a~~~~~~~~-------~~~~--------- 381 (541)
--..|...++...-. . ++..++......+. +..+
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 000111111111110 0 01111111111100 0000
Q ss_pred CCC--c------HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 382 IEH--K------IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 382 ~~~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
..| + ...|......+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|..++.++|++
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 011 1 123445566677777777777655555 4445 34555555566777888888888888888888888
Q ss_pred cchHHHHHHHHHhcCCHHHHHH--HHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSR--MRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
+.....++.++.+.|+..-|.. ++..+.+ .+|.+.++|..||.+...+|+.+
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr--------------------------~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALR--------------------------LDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHccchH
Confidence 8888888888888887666666 6666654 57999999999999999999999
Q ss_pred CCcccccccC
Q 048358 530 DVIDIMYEDI 539 (541)
Q Consensus 530 ~a~~~~~~~i 539 (541)
+|.+.+..++
T Consensus 772 ~Aaecf~aa~ 781 (799)
T KOG4162|consen 772 QAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHH
Confidence 9988776544
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=2.3e-07 Score=88.54 Aligned_cols=448 Identities=15% Similarity=0.078 Sum_probs=272.9
Q ss_pred hHHHHHHhccChh--HHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcC
Q 048358 16 RFVPILQSCENLI--ELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNN 90 (541)
Q Consensus 16 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~ 90 (541)
.|..++.++..-+ ..-.+.+.+++ +++-...+....--.+...|+-++|......... .+.+.|+++.-.+-..
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 4555666553222 12233444444 4444555555555556777999999999988776 4567799888888888
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHH
Q 048358 91 HLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIE 170 (541)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 170 (541)
.++++|+..|......+ +.|...+.-+.-.-++.|+++..........+.. +.....|..++.++.-.|+...
T Consensus 89 K~Y~eaiKcy~nAl~~~------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 6677777777777778899999988888888764 3345567778888888899999
Q ss_pred HHHHHhhcCC-----CChhhHHH------HHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHH
Q 048358 171 AHKVFEEMTD-----RDIVAWNN------LISGYARLGQMKKARMLFDKMPYT---TIVSWTAMISGYTHIGSYAEALDV 236 (541)
Q Consensus 171 A~~~~~~~~~-----~~~~~~~~------l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 236 (541)
|..+++...+ ++...+.. -.....+.|.+++|.+.+..-... ....-..-...+.+.++.++|..+
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 9998887754 34433332 234566788888888887765432 122333456778899999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHH-ccCC-hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH-HHHHHHHccCCC
Q 048358 237 FRQMQMVGIEPDEISIVSVLPACA-QLGS-LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN-QASQLFDQMVER 313 (541)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~ll~~~~-~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~ 313 (541)
++.++.. .||..-|...+..+. +..+ .+....+|....+.- +. ...-..+--......++. ..-+++....+.
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cc-cccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 9999987 677777776555544 2333 333335555444321 11 110000100111111222 222333333222
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 314 -DVVSWSTVIGGLANHGKAHKAIHLFHEMQR----LK----------VPPNDI--TFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 314 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
-+.++..+...|-.....+-..++...+.. .| -+|... ++..++..+-+.|+++.|..+++..
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 233444444444332222211111111111 11 145443 3445677788889999999988888
Q ss_pred hhhcCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---
Q 048358 377 KRDHHIEHK-IEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE--- 450 (541)
Q Consensus 377 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 450 (541)
... .|+ +..|..-.+.+...|++++|..++++. .++ ||...=.--..-..+.++.++|.++.....+.+.+
T Consensus 398 IdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 398 IDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred hcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 753 344 456666678888889999999988887 332 34333223444456778888888888776654421
Q ss_pred C----cchHHHH--HHHHHhcCCHHHHHHHHHHh
Q 048358 451 D----TGNYVLL--SNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 451 ~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m 478 (541)
+ .-.|..+ +.+|.++|++-.|++-+..+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1 1133332 44677787777777554444
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1e-10 Score=101.51 Aligned_cols=233 Identities=9% Similarity=0.015 Sum_probs=196.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK 296 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (541)
-+.+.++|.+.|.+.+|.+.|+..+.. .|-..||..+-+.|.+..++..|..++.+-.+. ++.++.........+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356889999999999999999998877 788889999999999999999999999887765 35566666778888999
Q ss_pred cCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.++.++|.++|+...+. |+.+...+...|...++++-|+.+|+++.+.| .-++..|+.+.-+|.-.+.++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998653 56666677788999999999999999999999 457888999999999999999999999
Q ss_pred HHhhhhcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 374 DSMKRDHHIEHK--IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 374 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
++.... --.|+ ..+|..+....+..|++.-|.+.|+-. .-.| ....++.|.-.-.+.|++++|..++..+.+..|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888763 22233 466888999999999999999999887 3344 468899998888999999999999999999888
Q ss_pred CCcch
Q 048358 450 EDTGN 454 (541)
Q Consensus 450 ~~~~~ 454 (541)
.-.+.
T Consensus 461 ~m~E~ 465 (478)
T KOG1129|consen 461 DMAEV 465 (478)
T ss_pred ccccc
Confidence 74443
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=1.3e-09 Score=106.79 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=114.3
Q ss_pred HHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 100 YKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 100 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
+-.+...|+ .|+..||..++.-|+..|+.+.|- +|.-|.-...+.+...++.++..+...++.+.+.
T Consensus 13 la~~e~~gi-----~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 13 LALHEISGI-----LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHHHHHhcC-----CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 344444454 555555555555555555555554 5555544444444555555555555555544443
Q ss_pred CCChhhHHHHHHHHHhcCCHHH-----------------------HHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHH
Q 048358 180 DRDIVAWNNLISGYARLGQMKK-----------------------ARMLFDKMP--YTTIVSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~-----------------------A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 234 (541)
.|...+|..|..+|.+.|++.. -..++-.+. ..-...-...+......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555432 222222211 000111122333334445555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER- 313 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 313 (541)
+++..+.... .+. ++..+++-+... ..-.+++........-.++..+|..++..-...|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa--~~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSA--WNA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHhhCCccc--ccc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 5554443221 000 111112222221 1222223322222211456666666666666666666666666666442
Q ss_pred ---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 314 ---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 314 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 22223333322 55566666666666666666666666666655555433
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=7.9e-10 Score=111.49 Aligned_cols=228 Identities=13% Similarity=-0.014 Sum_probs=172.3
Q ss_pred ChHHHHHHHHHHH-----ccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh---------cCCHHHHHHHHHccCC-
Q 048358 248 DEISIVSVLPACA-----QLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK---------CGCINQASQLFDQMVE- 312 (541)
Q Consensus 248 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~- 312 (541)
+...|...+.+.. ..++.+.|...++++.+... .+...|..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4444555555532 12346789999999887653 335566666665542 3458899999998855
Q ss_pred -C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH
Q 048358 313 -R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG 390 (541)
Q Consensus 313 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (541)
| +..++..+...+...|++++|...|++..+.+ |.+...+..+..++...|++++|+..+++..+.. |.+...+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 3 66788888888999999999999999999876 5567788888999999999999999999998753 22333334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-P-MKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.++..+...|++++|...+++. . ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4455677789999999999887 2 2354 4456667777889999999999999988888888888888888888888
Q ss_pred HHHHHHHHHHhhhC
Q 048358 468 WEDVSRMRKLIRSK 481 (541)
Q Consensus 468 ~~~A~~~~~~m~~~ 481 (541)
++|...++.+.+.
T Consensus 490 -~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 -ERALPTIREFLES 502 (553)
T ss_pred -HHHHHHHHHHHHH
Confidence 5888888887654
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=2.5e-09 Score=98.69 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
..|..+...|...|+.++|...|++..+ | ++..|+.+...+...|++++|...|++..+.. +-+..++..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666665533 2 44566666666667777777777777666643 334455666666666
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVI 439 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 439 (541)
..|++++|.+.|+...+.. |+..........+...++.++|...|++. ...|+...+ .+.. ...|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~--~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVE--FYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHH--HHccCCCHH-H
Confidence 6677777777776666532 22211111122233455667777666543 222222211 1111 223333222 1
Q ss_pred HHHHHh-------ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 440 AMEHLL-------VLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 440 ~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222222 233445566777777777777777777777776654
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=3.2e-10 Score=108.92 Aligned_cols=237 Identities=16% Similarity=0.141 Sum_probs=181.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC----------Chh-HHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVER----------DVV-SWSTVIGGLANHGKAHKAIHLFHEMQRL-----K-- 345 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-- 345 (541)
..+...+...|...|+++.|..+++...+. .+. ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667999999999999999999877432 222 3344677899999999999999998652 2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc----C-CCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhC-------
Q 048358 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH----H-IEHKI-EHYGCLVDLLGRAGRLDQALNIIEEM------- 412 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~------- 412 (541)
.+--..+++.|..+|.+.|++++|..+++...+-. + ..|.+ ..++.++..+...+++++|..++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11123467788888999999999988887765421 1 12222 23567778889999999999988875
Q ss_pred -C-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--------CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 413 -P-MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--------PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 413 -~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+ ..| -..++..|...|...|++++|.++++++++.. +....+++.|+..|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1 112 24778999999999999999999999998643 222447889999999999999999999987654
Q ss_pred CCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 482 SMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
. +..| .-+|+....|..|+-+|..+|++++|+++.+.++
T Consensus 439 ~--~~~g-----------------~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 M--KLCG-----------------PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H--HHhC-----------------CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2111 2579999999999999999999999999887665
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.8e-11 Score=78.94 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc
Q 048358 212 TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ 261 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 261 (541)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999888864
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.4e-08 Score=93.18 Aligned_cols=397 Identities=13% Similarity=0.034 Sum_probs=215.1
Q ss_pred HHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 54 DVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
++....|+++.|..+|-.... +|.+.|..-..+|+..|++++|+.=-.+-++.. |.-+..|.....++.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKGYSRKGAALFGL 83 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhHHHHhHHHHHhc
Confidence 345667888888888876543 567778778888888888888887777666653 44456788888888888
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHH-HHHhhcCCCChhhHH-----HHHHHHHhcCCHHHHHH
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAH-KVFEEMTDRDIVAWN-----NLISGYARLGQMKKARM 204 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~ 204 (541)
|++++|...|.+-++.. +.+...++.+..++. .+.+. +.|. .| ..|. .+.+.+.....+..-++
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~---~p--~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT---KP--YFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc---Cc--HHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888888887764 445666677776661 11111 1110 01 0110 01111111111111111
Q ss_pred HHhcCCCCCcch---HHHHHHHHHhcCChHH-HHHHH------------HHHHHCC-----------CCCChHHHHHHHH
Q 048358 205 LFDKMPYTTIVS---WTAMISGYTHIGSYAE-ALDVF------------RQMQMVG-----------IEPDEISIVSVLP 257 (541)
Q Consensus 205 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~-A~~~~------------~~m~~~~-----------~~p~~~~~~~ll~ 257 (541)
.+..-+. ++-. ...++.+.......+. ....- ..+.... ..--..-...+.+
T Consensus 154 ~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1111100 0000 0001110000000000 00000 0000000 0001112334555
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh----------HHHHHHHHHHh
Q 048358 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV----------SWSTVIGGLAN 327 (541)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~ 327 (541)
+..+..+++.+.+.+....... .+..-++....+|...|.+...........+..-. .+..+..+|.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5566666777777777666655 44555566666677777666666555444332111 12223345556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 406 (541)
.++++.++..|.+.......|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|+
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 6777777777777555433333221 22233333333333221 12221 11222355667788888888
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 407 NIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 407 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+.|.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++.++.
T Consensus 379 ~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 379 KHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888777 4455 56777777778888888888888888888888888888888788888888888888888876654
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=1.5e-07 Score=89.90 Aligned_cols=425 Identities=12% Similarity=0.037 Sum_probs=270.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHH
Q 048358 48 LVTKMIDVCNSGGDLAYASLLFKQVKEPN---VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVI 124 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll 124 (541)
.+..++..|-. +++...+++.+.+.+.. ..|.....-.+...|+-++|.+....-.+.. ..+..+|+.+.
T Consensus 10 lF~~~lk~yE~-kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d------~~S~vCwHv~g 82 (700)
T KOG1156|consen 10 LFRRALKCYET-KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND------LKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHH-HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC------cccchhHHHHH
Confidence 34445555433 45555555555444311 1122222223556788999999888887765 56788899988
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 048358 125 KSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKK 201 (541)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 201 (541)
-.+....++++|.+.|..++..+ +.|...+.-+.-.-++.|+++..........+ .....|..++.++--.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999976 45777887777777788888888777777665 345688888888888999999
Q ss_pred HHHHHhcCCC-----CCcchHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChHHHH
Q 048358 202 ARMLFDKMPY-----TTIVSWTAM------ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV-SVLPACAQLGSLELGE 269 (541)
Q Consensus 202 A~~~~~~~~~-----~~~~~~~~l------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~ 269 (541)
|..+++...+ ++...+... .......|..++|.+.+..-... ..|...+. .-...+.+.+++++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9888876642 333333322 23456678888888877665432 22333332 3445577889999999
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH-HHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS-QLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK 345 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 345 (541)
.++..+.... +.+...|..+..++.+-.+.-++. .+|....+. ....-..=+.......-.+..-+++..+.+.|
T Consensus 240 ~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 240 KVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999888765 333444445555554333333333 566555321 00000000111111122344456777888888
Q ss_pred CCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhhhhc---------CCCCcHhHHH--HHHHHHHhcCCHHHHHHHHHhC-
Q 048358 346 VPPNDITFIGLLSACAHTGFWNE-GLMYFDSMKRDH---------HIEHKIEHYG--CLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
+++--..+..+-.-=.+..-.++ +..+...+.... .-+|....|. .++..|-+.|+++.|..+++..
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 77644433333221111111111 122222221110 0156655554 5677888999999999999988
Q ss_pred CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 413 PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 413 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+-.|+. ..|..-...+...|++++|...++++.+++..|...-.--+....++.+.++|.++.-..-..|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 666765 44555556789999999999999999999988776666788888999999999999998877765
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.5e-07 Score=91.86 Aligned_cols=411 Identities=12% Similarity=0.084 Sum_probs=246.1
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCC--CCcch-HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 51 KMIDVCNSGGDLAYASLLFKQVKE--PNVFL-YNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 51 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
.....+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|..+++.+ |.+..-|..+..+.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN------PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHH
Confidence 344567888999999999987654 45444 4566678889999999999999999885 44444444444444
Q ss_pred hcc-----CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChH-HHHHHHhhcCCCCh-hhHHHHHHHHHhcCCHH
Q 048358 128 AGL-----LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELI-EAHKVFEEMTDRDI-VAWNNLISGYARLGQMK 200 (541)
Q Consensus 128 ~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 200 (541)
... .+.+....+++++...- |.......+.-.+..-..+. .+...+..+...++ ..|+.+-..|....+.+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 222 24566677888776653 22222222221222211222 23333444444444 34555555555444444
Q ss_pred HHHHHHhcCC------------------CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHH
Q 048358 201 KARMLFDKMP------------------YTTI--VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD-EISIVSVLPAC 259 (541)
Q Consensus 201 ~A~~~~~~~~------------------~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 259 (541)
-..+++.... .|.. .++..+...|-..|++++|++++++..++ .|+ ...|..-.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 4444443321 1222 34566778888999999999999999987 565 55777788889
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh----------HH--HHHHHHHHh
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV----------SW--STVIGGLAN 327 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~ 327 (541)
-..|++.+|...++.+...+. -|..+-+..+..+.+.|++++|.+++....+++.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988763 35667777888899999999999999888665421 22 334678889
Q ss_pred cCChHHHHHHHHHHHhC--CC---CCC----------HHHHHHHHHHHhccC-------cHHHHHHHHHHhhhhcCCCC-
Q 048358 328 HGKAHKAIHLFHEMQRL--KV---PPN----------DITFIGLLSACAHTG-------FWNEGLMYFDSMKRDHHIEH- 384 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~--~~---~p~----------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~- 384 (541)
.|++..|++-|....+. .+ +-| ..+|..+++..-+.. -...|+++|-.+........
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~ 397 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQG 397 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999998877665432 01 222 233344443322111 12344555555543211000
Q ss_pred ----------cHhHHHHHHHHH---HhcCCHHHHHHHHH-----------hC------CCCCCHHHHHHHHHHHhhc-CC
Q 048358 385 ----------KIEHYGCLVDLL---GRAGRLDQALNIIE-----------EM------PMKPDAKIWGSLLSSCRTY-SN 433 (541)
Q Consensus 385 ----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~l~~~~~~~-~~ 433 (541)
+..--..+..-. .+...-+++.+.-. .. +..||+ +..-+.+. .-
T Consensus 398 ~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~GekL~~t~dP 472 (517)
T PF12569_consen 398 EEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----LGEKLLKTEDP 472 (517)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc-----cHHHHhcCCcH
Confidence 000001111100 11111111111110 00 112222 11222233 45
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.++|.++++-+.+..|++..+|..-..+|.+.|++-.|++.+.+
T Consensus 473 Le~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 473 LEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999999887764
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=3.1e-11 Score=77.78 Aligned_cols=50 Identities=32% Similarity=0.590 Sum_probs=44.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999998875
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=2.2e-09 Score=89.15 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
...|.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|..+.|.+.|+...+. -+.+..+.|....-+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 3345556666777777777777776665 445556666666677777777777777776653 2445556666677777
Q ss_pred hcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 398 RAGRLDQALNIIEEMPMKP----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...|++.++.+|..+.....++......|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777662222 245666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHhhhCC
Q 048358 474 MRKLIRSKS 482 (541)
Q Consensus 474 ~~~~m~~~~ 482 (541)
.++.....+
T Consensus 195 ~~~~~~~~~ 203 (250)
T COG3063 195 YLERYQQRG 203 (250)
T ss_pred HHHHHHhcc
Confidence 777665543
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.8e-09 Score=99.70 Aligned_cols=216 Identities=11% Similarity=0.017 Sum_probs=153.6
Q ss_pred CHHHHHHHHHccCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 299 CINQASQLFDQMVE-----R--DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 299 ~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
..+.+...+.++.. + ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++.|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555532 1 23467778888899999999999999998875 5667889999999999999999999
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.|+...+. -|.+...|..+..++...|++++|.+.|++. ...|+..........+...++.++|...+++.....++
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999873 2445677888888899999999999999887 55665432222222345677899999999776654333
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccC
Q 048358 451 DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 530 (541)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 530 (541)
+. |. ........|++.++ +.++.+.+.- .. ..++.|+..++|..||.++..+|+.++
T Consensus 198 ~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~-~~------------------~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 198 EQ--WG-WNIVEFYLGKISEE-TLMERLKAGA-TD------------------NTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred cc--cH-HHHHHHHccCCCHH-HHHHHHHhcC-CC------------------cHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 22 22 23444556666554 3555544321 10 112467788999999999999999999
Q ss_pred CcccccccCC
Q 048358 531 VIDIMYEDIG 540 (541)
Q Consensus 531 a~~~~~~~i~ 540 (541)
|+..+.++|+
T Consensus 255 A~~~~~~Al~ 264 (296)
T PRK11189 255 AAALFKLALA 264 (296)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=8.2e-08 Score=84.79 Aligned_cols=406 Identities=13% Similarity=0.010 Sum_probs=229.2
Q ss_pred HHcCCChHHHHHHHhcCCCC---C-cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccC
Q 048358 56 CNSGGDLAYASLLFKQVKEP---N-VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLL 131 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~~---~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 131 (541)
+....++..|..+++--... . ..+--.+..++.+-|++++|+..++.+.... .|+...+..|.-+.--.|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC------CCCcccchhHHHHHHHHH
Confidence 44445666666666543320 1 1112224455667788888888888777655 555555555555555556
Q ss_pred CchHHHHHHHHHHHhCCCCchhhHH-HHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 132 CPSLGKQIHAHVCKFGLKSHSITEN-ALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
.+.+|..+-... |+....+ .++....+.|+-++-..+-+.+.+. ..---+|....-..-.+++|++++.+..
T Consensus 106 ~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 106 QYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666554332 2222333 3344445556655554444444321 1222233333333445677777777765
Q ss_pred CCCc--chHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHc--cCC--------------------
Q 048358 211 YTTI--VSWTA-MISGYTHIGSYAEALDVFRQMQMVGIEPDEIS-IVSVLPACAQ--LGS-------------------- 264 (541)
Q Consensus 211 ~~~~--~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~--~~~-------------------- 264 (541)
..+. ...|. +.-+|.+..-++-+.++++-.++. -||... .+..+....+ .|+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 4333 33343 334566666666666666665544 343322 2211111111 111
Q ss_pred -------------hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCC-
Q 048358 265 -------------LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGK- 330 (541)
Q Consensus 265 -------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~- 330 (541)
-+.|.+++--+.+. -+...-.|+-.|.+.++.++|..+.+++...++.-|-.-.-.++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 12222222222211 122334466678899999999999998866555544433333444333
Q ss_pred ------hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH
Q 048358 331 ------AHKAIHLFHEMQRLKVPPND-ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 331 ------~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (541)
..-|...|+-.-+.+..-|. .--..+..++.-..++++++-++..+..- -...|... ..+..+++..|.+.
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYV 410 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChH
Confidence 33444555544444433332 22345566666777899999999988763 33344443 45889999999999
Q ss_pred HHHHHHHhCC-CC-CCHHHHHHHH-HHHhhcCCHHHHHHHHHHHhccC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 404 QALNIIEEMP-MK-PDAKIWGSLL-SSCRTYSNLEIAVIAMEHLLVLE-PED-TGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 404 ~A~~~~~~~~-~~-p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
+|.++|-.+. -+ .|..+|..++ .+|.+.++.+.|..++-+ .+ |.+ ...+..+++-+.+.+.+=-|-+.|+.+
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999998882 12 3556665554 568899999999877644 33 333 334556677888999988888889888
Q ss_pred hhCCCcc
Q 048358 479 RSKSMKK 485 (541)
Q Consensus 479 ~~~~~~~ 485 (541)
...++.|
T Consensus 488 E~lDP~p 494 (557)
T KOG3785|consen 488 EILDPTP 494 (557)
T ss_pred HccCCCc
Confidence 7665544
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.4e-07 Score=79.75 Aligned_cols=398 Identities=12% Similarity=0.086 Sum_probs=252.2
Q ss_pred HHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 54 DVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
-.+-+.|++++|+..+..+.+ ++...|-.+.-++.--|.+.+|..+-... +.++..-..++....+.
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----------~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----------PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----------CCChHHHHHHHHHHHHh
Confidence 345677999999999988765 56666766776667778899998877664 45556666677777788
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHH-HHHHhcCCHHHHHHHHh
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLI-SGYARLGQMKKARMLFD 207 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~A~~~~~ 207 (541)
++-++-....+.+.+. ..-.-+|.......-.+.+|.+++.++.. |+-...|..+ -+|.+..-++-+.+++.
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 8887777776666442 23334456665556678999999999876 4444555433 45666666666666554
Q ss_pred cCC---CCCcchHHHHHHHHHhc--CC---------------------------------hHHHHHHHHHHHHCCCCCCh
Q 048358 208 KMP---YTTIVSWTAMISGYTHI--GS---------------------------------YAEALDVFRQMQMVGIEPDE 249 (541)
Q Consensus 208 ~~~---~~~~~~~~~l~~~~~~~--g~---------------------------------~~~A~~~~~~m~~~~~~p~~ 249 (541)
--. ..++.+.|..+....+. |+ -+.|++++--+.+. -|.
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE- 286 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE- 286 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH-
Confidence 332 22334444444333332 21 12222222222211 121
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC-------CHHHHHHHHHccCC-----CChhH
Q 048358 250 ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG-------CINQASQLFDQMVE-----RDVVS 317 (541)
Q Consensus 250 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~-----~~~~~ 317 (541)
.-..++--|.+.+++.+|..+.+.+. +.++.-|-.-.-.++..| .+.-|...|+-+-. ..+.-
T Consensus 287 -ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 287 -ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred -hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 12234445778899999988876543 222332322222233333 35567777765522 23445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHH-HHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY-GCLVDLL 396 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 396 (541)
-.++..++.-..++++++..+.....-= ..|...-..+.++++..|++.+|.++|-.+... .+ .+..+| ..|.+.|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHH
Confidence 6677788888889999999888877653 333333346789999999999999999888642 23 344445 5577899
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 397 GRAGRLDQALNIIEEMPMKPDAKIWGSLLS-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
.++++++-|.+++-++....+..+...+|. -|.+.+.+--|-..|+.+..++|. |+-|. |+--.-..+|
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f 508 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGACAGLF 508 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchHHHHH
Confidence 999999999999999965556666666665 499999999999999988888876 44443 3333334556
Q ss_pred HHhhhCCCccCC
Q 048358 476 KLIRSKSMKKTP 487 (541)
Q Consensus 476 ~~m~~~~~~~~~ 487 (541)
..+.....+|.|
T Consensus 509 ~~l~~~~~~~~p 520 (557)
T KOG3785|consen 509 RQLANHKTDPIP 520 (557)
T ss_pred HHHHcCCCCCCc
Confidence 655544444433
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.6e-08 Score=84.10 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
+...|.-.|...|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 45567778888888888888888886543 3467778888888888888888888888765 5556677777777888
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.|.+++|.+.|+..........-..+|..+.-+..+.|+.+.|.+.|++. ...| ...+...+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888876555555677888888888888888888888876 5555 356777777888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+++.....+.+.+.+...++.-...|+-+.|-++=..+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888887777788888888888888888888776655543
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.2e-08 Score=96.02 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=188.8
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+.+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+- |..+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356677777777777777765 446788999999999999888899888888553 5667777888899889889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH
Q 048358 336 HLFHEMQRLKVPPNDITFIGLL-----------SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (541)
+.|+.=+... +| |..+. ..+..........++|-++....+..+|+.++..|.-.|.-.|++++
T Consensus 374 ~~L~~Wi~~~-p~----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK-PK----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC-cc----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8888765432 11 00010 12223344556667777776666656888889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
|.+.|+.. .++| |..+|+.|...++...+.++|+..|.+++++.|.-..+.+.|+..|...|.+++|...|=......
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999988 7788 668999999999999999999999999999999999999999999999999999998877665432
Q ss_pred CccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 483 MKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
-....+ . ..-++ +..++..|...+..+++.+
T Consensus 529 ~ks~~~-----~----------~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 529 RKSRNH-----N----------KAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hccccc-----c----------cCCcc-hHHHHHHHHHHHHHcCCch
Confidence 110000 0 00111 5678888888888888776
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-07 Score=88.68 Aligned_cols=399 Identities=13% Similarity=0.051 Sum_probs=240.6
Q ss_pred HHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc-hhhHHHHHHHHH
Q 048358 85 RAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSH-SITENALLDLYG 163 (541)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~ 163 (541)
.+.+..|+++.|+..|.+.+... ++|...|..-..+++..|+++.|.+=-.+.++ +.|+ ..-|+....++.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS------PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC------CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH
Confidence 45677899999999999999887 77888899999999999999998876666555 4455 457888888889
Q ss_pred cCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--------Cc--------chHHHHHHHH
Q 048358 164 KCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARLGQMKKARMLFDKMPYT--------TI--------VSWTAMISGY 224 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~l~~~~ 224 (541)
-.|++++|...|.+-.+ | |...++.+..++ ..+.+. -+....| ++ ..|..++..+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~--~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA--DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh--hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 99999999999998766 3 444566666555 111111 1111111 11 1222222221
Q ss_pred HhcC-------ChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHccCChH----HHHHHHHHHHH-hCCCccHhHHHHHH
Q 048358 225 THIG-------SYAEALDVFRQMQMVGIEPDEISIVSV-LPACAQLGSLE----LGEWIHMYCDK-NHLLRRTVICNALI 291 (541)
Q Consensus 225 ~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~ 291 (541)
-+.- +.+......-.+...+. . .+..- .........+. ..........+ .....-..-...+.
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 1110 00111111100000000 0 00000 00000000000 00000000000 00000112345577
Q ss_pred HHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHhc
Q 048358 292 EMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG-------LLSACAH 362 (541)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------l~~~~~~ 362 (541)
++..+..++..|.+-+..... .++.-++....+|...|.+.++...-....+.| .-...-|+. +..+|.+
T Consensus 232 naaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhh
Confidence 777788888888888877644 344456677778888888888887777776665 222233333 3345666
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.++++.++..|.+....+ ..|+ ...+....+++++..+.. -+.|.. .-...-...+.+.|++..|+..
T Consensus 311 ~~~~~~ai~~~~kaLte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHhHHHHHHHHHHHhhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 788999999998877643 2222 233445566666666555 344543 2223335568899999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
|.++++.+|+|+..|...+-+|.+.|.+..|+.-.+...+ ++|+...+|.-=+.
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--------------------------L~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--------------------------LDPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------------------------cCchHHHHHHHHHH
Confidence 9999999999999999999999999999999988777655 35666666666666
Q ss_pred HHHHHhcccCCccccccc
Q 048358 521 LALHQDRAKDVIDIMYED 538 (541)
Q Consensus 521 ~~~~~~~~~~a~~~~~~~ 538 (541)
++..+++++.|.+.+.+.
T Consensus 435 al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555443
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.6e-07 Score=84.65 Aligned_cols=341 Identities=13% Similarity=0.083 Sum_probs=174.5
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh--hHHHHHHHHHhcCCHHHHH
Q 048358 126 SCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV--AWNNLISGYARLGQMKKAR 203 (541)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~ 203 (541)
.+...+++++|.+....++..+ +-+...+..-+-+..+.+++++|+++.+.-...... -+-.-..+..+.+..++|.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 3344555666666666655554 333444444444555666666666554443221111 1112233444566677777
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 048358 204 MLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEI--SIVSVLPACAQLGSLELGEWIHMYCDKNHLL 281 (541)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 281 (541)
..++...+.+..+...-...+.+.|++++|+++|+.+.+.+. ++.. .-..++.+-.. -.+. .+......
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~v 170 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ----LLQSVPEV 170 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH----HHHhccCC
Confidence 777655444444555555666777777777777777766542 2211 11111111100 0000 11111111
Q ss_pred c--cHhHHHHHHHHHHhcCCHHHHHHHHHcc--------CCCCh-----h-----HHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 282 R--RTVICNALIEMYIKCGCINQASQLFDQM--------VERDV-----V-----SWSTVIGGLANHGKAHKAIHLFHEM 341 (541)
Q Consensus 282 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~l~~~~~~~~~~~~a~~~~~~m 341 (541)
| +-..+......+...|++.+|++++... .+.|. . .-..|.-.+...|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2 1122222344566778888888887766 11111 1 1223445667789999999999999
Q ss_pred HhCCCCCCHHHH----HHHHHHHhccCcHHH--HHHHHHHhhhhc--------CCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 342 QRLKVPPNDITF----IGLLSACAHTGFWNE--GLMYFDSMKRDH--------HIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 342 ~~~~~~p~~~~~----~~l~~~~~~~g~~~~--a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
+... ++|.... |.|+. ...-.++-. ++..++.....+ .-..-...+........-.+..+.+.+
T Consensus 251 i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8886 5554322 22222 222111111 222222221110 000011112111112222455567777
Q ss_pred HHHhCC-CCCCHHHHHHHHH-HH-hhcCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 408 IIEEMP-MKPDAKIWGSLLS-SC-RTYSNLEIAVIAMEHLLVLEPED-TGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 408 ~~~~~~-~~p~~~~~~~l~~-~~-~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+....+ ..|.. .+..++. +. .+.....++.+++....+..|.+ ..+...++.....+|+++.|.+++....
T Consensus 329 ~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 777773 33444 3344443 32 33336888899998888888886 5577778888999999999999999554
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=8.7e-06 Score=88.64 Aligned_cols=363 Identities=12% Similarity=0.000 Sum_probs=228.3
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCCh
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRDIV--AWNNLISGYARLGQMKKARMLFDKMPY----TTIVSWTAMISGYTHIGSY 230 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 230 (541)
.....+...|++.+|............. ............|+++.+...++.++. .++.........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3344456667777666665555443211 111222345557888888888877742 2333344455666788999
Q ss_pred HHHHHHHHHHHHCC--C----CCChH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc----HhHHHHHHHHHHhcC
Q 048358 231 AEALDVFRQMQMVG--I----EPDEI--SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR----TVICNALIEMYIKCG 298 (541)
Q Consensus 231 ~~A~~~~~~m~~~~--~----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 298 (541)
+++...+......- . .+... ....+...+...|+++.|...++.........+ ....+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999988775431 0 11111 112223345678999999999988776322222 124566677788899
Q ss_pred CHHHHHHHHHccCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHhc
Q 048358 299 CINQASQLFDQMVE-------RD--VVSWSTVIGGLANHGKAHKAIHLFHEMQR----LKVP--P-NDITFIGLLSACAH 362 (541)
Q Consensus 299 ~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~~~~l~~~~~~ 362 (541)
++++|...+.+... +. ..++..+...+...|++++|...+++... .+.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999998887732 11 23455567778889999999998887654 2211 1 22334455566777
Q ss_pred cCcHHHHHHHHHHhhhhc---CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHhh
Q 048358 363 TGFWNEGLMYFDSMKRDH---HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDAKIWG-----SLLSSCRT 430 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~ 430 (541)
.|++++|...+....... +.......+..+...+...|++++|.+.++.. ........+. ..+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999988875421 11112344555677888999999999888776 1111111111 11233456
Q ss_pred cCCHHHHHHHHHHHhccCCCCcch----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGN----YVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDD 506 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (541)
.|+.+.|...+.......+..... +..++.++...|++++|...+++.....-. ..
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~--------------------~g 725 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS--------------------LR 725 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------hC
Confidence 889999999987766533222211 457888899999999999999988664210 01
Q ss_pred CCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 507 TKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 507 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++...++..++..+..+|+.++|.+.+.+++
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123456678899999999999999988877664
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.5e-08 Score=91.99 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=133.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-ccHhHHHHHHHHH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-RRTVICNALIEMY 294 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 294 (541)
....+.+++...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 33445566666776655432 222222 555555544444444333444443333333222222 2333333334556
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHH
Q 048358 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH----TGFWNEGL 370 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 370 (541)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 6678888888777765 456666677788888888888888888887753 33444445544332 34678888
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH-HHHHHHHHHHhcc
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL-EIAVIAMEHLLVL 447 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 447 (541)
-+|+++... .++++.+.+.+..+....|++++|.+++.+. ...| +..++..++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888887653 4567777788888888888888888877765 4444 456666677766666766 6677788887777
Q ss_pred CCCCc
Q 048358 448 EPEDT 452 (541)
Q Consensus 448 ~~~~~ 452 (541)
.|.++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 77754
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=3.2e-07 Score=89.71 Aligned_cols=281 Identities=14% Similarity=0.100 Sum_probs=146.8
Q ss_pred HhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH------ccCC
Q 048358 194 ARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACA------QLGS 264 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~------~~~~ 264 (541)
...|++++|++.++.-.. ............+.+.|+.++|..+|+.+++. .|+...|...+..+. ...+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccccc
Confidence 344444444444443221 11233444556666666666666666666655 344444444443333 1123
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH-HHHHHHHccCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN-QASQLFDQMVERD-VVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
.+....+++.+...-.. ......+.-.+.....+. .+...+..+.... +.+|+.+-..|....+..-...++....
T Consensus 93 ~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 45555555555443311 111111111111111111 1222223333322 2344555444544433333334444432
Q ss_pred hC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 343 RL----K----------VPPND--ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 343 ~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
.. + -+|+. .++..+...|...|++++|+++.++..... |-.+..|..-.+.|-+.|++.+|.
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 21 1 12333 244556677778888888888888887632 333677777888888888888888
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-cc------hH--HHHHHHHHhcCCHHHHHHHH
Q 048358 407 NIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-TG------NY--VLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 407 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~------~~--~~l~~~~~~~g~~~~A~~~~ 475 (541)
+.++.. ...+ |...=+..+..+.+.|++++|...+......+.+. .. .| .--+.+|.+.|++..|+..+
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888877 4444 34444445555778888888888887776544211 11 22 34567788888888888766
Q ss_pred HHhhh
Q 048358 476 KLIRS 480 (541)
Q Consensus 476 ~~m~~ 480 (541)
..+.+
T Consensus 329 ~~v~k 333 (517)
T PF12569_consen 329 HAVLK 333 (517)
T ss_pred HHHHH
Confidence 55543
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=6.1e-09 Score=94.58 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=167.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44566788888886665 222211223344556778888888876543 3333333 566666666665555545666
Q ss_pred HHHHHHHccC-CC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 302 QASQLFDQMV-ER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 302 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
.+..-+.+.. ++ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666543 32 2222222334566679999999887642 45677778889999999999999999999
Q ss_pred hhhcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 377 KRDHHIEHKIEHYGCLVDLLG----RAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.+. ..|. +...+..++. ..+.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++++++.+|.
T Consensus 158 ~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 863 3333 2334444443 344799999999999 44578899999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCH-HHHHHHHHHhhhC
Q 048358 451 DTGNYVLLSNIYAKHGRW-EDVSRMRKLIRSK 481 (541)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 481 (541)
++.++..++.+....|+. +.+.+++.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 7788899888764
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=5.5e-07 Score=87.08 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
...-..++.+..++-..+.-|+.++|..-+-++|+
T Consensus 989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 34556677788888888888888888666555553
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=1.2e-06 Score=77.30 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=165.1
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhcCChH
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI---SGYARLGQMKKARMLFDKMPYTTIVSWTA---MISGYTHIGSYA 231 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 231 (541)
+...+...|++..|+.-|....+-|...|.++. ..|...|+...|+.-+++..+..+..+.+ -...+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 334444555555555555555554444444333 23444455444444444443222222222 123455666666
Q ss_pred HHHHHHHHHHHCCCCCChH----------------HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEI----------------SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYI 295 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (541)
+|..-|+..+++. |+.. .....+..+...|+...++.....+.+.. +.+...|..-..+|.
T Consensus 124 ~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 6666666665542 2111 11223344555666666666666666543 455666666677777
Q ss_pred hcCCHHHHHHHHHcc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHH
Q 048358 296 KCGCINQASQLFDQM---VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL-------------LSA 359 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------------~~~ 359 (541)
..|++..|+.=++.. ...|..++.-+-..+-..|+.+.++...++..+. .||....... +..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777776655544 3345555555556666667777777666666654 3554321111 112
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHK-----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYS 432 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 432 (541)
....++|.++++..+...+. .|. ...+..+-.++...|++.+|++...+. .+.|+ +.++..-..+|.-..
T Consensus 279 ~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 23456777777777777653 233 122344555666778888888887776 66665 677777777888888
Q ss_pred CHHHHHHHHHHHhccCCCCcchHH
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.++.|+.-|+++.+.++++..+-.
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHH
Confidence 888888888888888877654433
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=7.1e-07 Score=78.71 Aligned_cols=291 Identities=14% Similarity=0.098 Sum_probs=221.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHHHHcc
Q 048358 187 NNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMI---SGYTHIGSYAEALDVFRQMQMVGIEPDEISIVS-VLPACAQL 262 (541)
Q Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~ 262 (541)
.-+...+...|++..|+.-|....+-|+..|.++- ..|...|+...|+.-+.+.++. +||...-.. -...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 34566777789999999999999888887777664 5788999999999999988865 888654322 23346789
Q ss_pred CChHHHHHHHHHHHHhCCCcc--HhHH------------HHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHH
Q 048358 263 GSLELGEWIHMYCDKNHLLRR--TVIC------------NALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGL 325 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 325 (541)
|.++.|..-|+.+++.....+ ...+ ...+..+...|+...|+.....+.+ .|...|..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 999999999999998754211 1111 2234456678999999999888855 3777888889999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh-H---HHHH---------
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE-H---YGCL--------- 392 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~---~~~l--------- 392 (541)
...|++..|+.=++...+.. ..|..++..+-..+...|+.+.++...++..+- .|+.. + |..+
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999998888877654 556667777777888899999999998888863 45532 1 2211
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 393 VDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+....+.+++-++++-.+.. ...|. ...+..+-.++...+++.+|++...++++.+|+|..++..-+.+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 12234567777777777665 44554 2334555566788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhCCC
Q 048358 467 RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 467 ~~~~A~~~~~~m~~~~~ 483 (541)
.+++|+.-|+...+.+.
T Consensus 356 ~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999877643
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.3e-05 Score=80.58 Aligned_cols=358 Identities=11% Similarity=0.163 Sum_probs=174.7
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
.|+..-+..+.++...+-+.+-++++++..-.+- ...-+...-+.|+-...+ -+.....+..+.+-..+ .|
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S---~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~---- 1052 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP---- 1052 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc---ccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch----
Confidence 4555556667777777777788888777764321 001111222333322222 23334444444443322 11
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (541)
.+.......+-+++|..+|++.. -+..+.+.|+. .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|+
T Consensus 1053 --~ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1053 --DIAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred --hHHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHH
Confidence 23344455556666666666642 12223333332 234555666655555443 34666666666666666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERD 314 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 314 (541)
+-|-+. -|...|..++..+.+.|.+++..+++..+.+..-+|... +.|+-+|++.+++.+.++++. .||
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN 1193 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPN 1193 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCC
Confidence 655442 244556666666666666666666666666555444332 456666666666666555432 233
Q ss_pred hhH--------------------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048358 315 VVS--------------------------WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 315 ~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 368 (541)
... |..|...+...|++..|.+.-++. .+..||..+-.+|...+.+..
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhH
Confidence 333 444444444455555444433321 233455555555554444332
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
|. +-. ..+.....-...++..|...|-+++.+.+++.. |... ....|.-|.-.|.+- ++++..+.++-...
T Consensus 1268 AQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1268 AQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred HH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 21 110 112223333455666666666666666666654 4332 223333333333332 33444443333322
Q ss_pred -cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 447 -LEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 447 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
++ .-.++++..++--|.+..-++.+-.
T Consensus 1341 RvN------ipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1341 RVN------IPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hcc------hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1134555555556666665555443
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=7.5e-06 Score=80.53 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=106.3
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCC-------------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-------------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTG 110 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (541)
.+..+|..+.++|.+..+++-|.-.+..|.. ++ .+-..+...-..-|..++|..+|.+-.+.+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D--- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD--- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 3556788888888888887777777766653 21 111122222345677778888777766533
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC----------
Q 048358 111 SLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---------- 180 (541)
Q Consensus 111 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 180 (541)
.+-+.|...|.+++|.++-+.--+..+ ..||.....-+-..+|.+.|++.|++...
T Consensus 831 -----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 831 -----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred -----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 344556667788877776543322211 24555556666667778888887776542
Q ss_pred -------------CChhhHHHHHHHHHhcCCHHHHHHHHhcCC------------------------CCCcchHHHHHHH
Q 048358 181 -------------RDIVAWNNLISGYARLGQMKKARMLFDKMP------------------------YTTIVSWTAMISG 223 (541)
Q Consensus 181 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~l~~~ 223 (541)
+|...|.=...-+-..|+.+.|+.+|.... ..|..+...+.+.
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM 976 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH
Confidence 122223223333344677777777766543 1133455566677
Q ss_pred HHhcCChHHHHHHHHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~ 241 (541)
|-..|++.+|..+|.+.+
T Consensus 977 YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 777777777777776654
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.96 E-value=1.7e-06 Score=86.68 Aligned_cols=420 Identities=12% Similarity=0.044 Sum_probs=258.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC--cccH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD--KFTL 120 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~--~~~~ 120 (541)
...|..|-..|....+...|.+.|++..+ .+..++....+.|+...+++.|..+.-..-+.. +.- ...|
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka------~a~~~k~nW 565 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA------PAFACKENW 565 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc------hHHHHHhhh
Confidence 34677777778777788888888888776 455677788888999999998888844433322 111 1223
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh-hHHH--HHHHHHhcC
Q 048358 121 PFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV-AWNN--LISGYARLG 197 (541)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~~~ 197 (541)
....-.+...++...+..-|+...+.. +.|...|..+..+|.++|++..|.++|.+...-+.. .|.. ....-+..|
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 333445567778888888888888765 347788888999999999999999999777653222 2222 223344567
Q ss_pred CHHHHHHHHhcCCC---------CC-cchHHHHHHHHHhcCChHHHHHHHHH-------HHHCCC---------------
Q 048358 198 QMKKARMLFDKMPY---------TT-IVSWTAMISGYTHIGSYAEALDVFRQ-------MQMVGI--------------- 245 (541)
Q Consensus 198 ~~~~A~~~~~~~~~---------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-------m~~~~~--------------- 245 (541)
.+.+|...+..... .+ ..++-.+...+...|-..+|..++++ ...+..
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 77777777765531 11 11222222222223322223322222 222211
Q ss_pred -----CCC---hHHHHHHHHHHHccCCh---H---HHHHHHHHHHHhCCCccHhHHHHHHHHHHh----c----CCHHHH
Q 048358 246 -----EPD---EISIVSVLPACAQLGSL---E---LGEWIHMYCDKNHLLRRTVICNALIEMYIK----C----GCINQA 303 (541)
Q Consensus 246 -----~p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~A 303 (541)
.|+ .....++..-....+.. + .+.+.+-.- .....+...|..|+..|.+ . .+...|
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 122 11111111112222221 1 011111100 1111234455555554443 1 233467
Q ss_pred HHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 304 SQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
...+...++ .+..+|+.|.-. ...|.+.-+...|-+-.... +.+..+|..+.-.+....+++.|...|...+.-
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL- 879 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL- 879 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc-
Confidence 777776644 466677776555 66688888888888777664 667778888888899999999999999999863
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhhcCCHHHHHH----------HHHH
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPDAKIWGSLLSSCRTYSNLEIAVI----------AMEH 443 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~~~~ 443 (541)
.|.+...|..........|+.-++..+|..- +.-|+...|.+........|+.++-+. .+++
T Consensus 880 -dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 -DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred -CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3566777776666667888888888888762 334566555555555566766665554 3445
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 444 LLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
.....|+...+|...+....+.+.+.+|.++..+.
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55566899999999999999999999998877765
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=8.4e-06 Score=88.73 Aligned_cols=323 Identities=10% Similarity=-0.024 Sum_probs=192.9
Q ss_pred HHHHcCCChHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCC---c-----chHHHHHHH
Q 048358 160 DLYGKCDELIEAHKVFEEMTD----RDIVAWNNLISGYARLGQMKKARMLFDKMP----YTT---I-----VSWTAMISG 223 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~---~-----~~~~~l~~~ 223 (541)
......|+++.+...++.++. .+..........+...|++++|...+.... ..+ . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556777777777766632 122222334444556777777777765432 111 1 112223345
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-----ccHhHHHHHHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDE----ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-----RRTVICNALIEMY 294 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~ 294 (541)
+...|++++|...+++....-...+. .....+...+...|+++.|...+......... ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56788888888888887653111121 22344455567788888888888777643111 1123455667778
Q ss_pred HhcCCHHHHHHHHHccCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE-------R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK--VPP--NDITFIGLLSA 359 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~ 359 (541)
...|+++.|...+++... + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 888999888888776522 1 11234445556677799999988888765421 112 12334445666
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHY-----GCLVDLLGRAGRLDQALNIIEEMPM-K-PDA----KIWGSLLSSC 428 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~ 428 (541)
+...|+++.|...++..............+ ...+..+...|+.+.|.+++..... . ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999988888775421111111101 1122444567888888888877621 1 111 1134455667
Q ss_pred hhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 429 RTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
...|+.++|...++++.... +....++..++.++.+.|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999888887642 1123467778888889999999998888887643
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=2.9e-06 Score=81.50 Aligned_cols=257 Identities=12% Similarity=-0.011 Sum_probs=148.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHH----ccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDE-ISIVSVLPACA----QLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK 296 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (541)
..+...|++++|.+.+++..+. .|+. ..+.. ...+. ..+..+.+.+.+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3455677788888887777665 3333 23321 11222 23444444444433 111112223344556677788
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PPND--ITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 370 (541)
.|++++|...+++..+ .+...+..+...+...|++++|..++++.....- .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888887744 2455677777888888888888888888776431 1222 23456777788888888888
Q ss_pred HHHHHhhhhcCCCCcHhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 371 MYFDSMKRDHHIEHKIEHY-G--CLVDLLGRAGRLDQALNI---IEEM-PMKP---DAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.+++.........+..... + .++.-+...|....+.++ .... +..| ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888875422111222111 1 222333333432222222 1111 1101 112222455567888999999999
Q ss_pred HHHHhccCC---------CCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 441 MEHLLVLEP---------EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 441 ~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
++.+..... .........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 988765321 124455667777889999999999999887653
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1.5e-06 Score=83.43 Aligned_cols=307 Identities=11% Similarity=0.040 Sum_probs=195.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHH-HHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHH--
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGI-EPDEISIV-SVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNA-- 289 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 289 (541)
+..|..+...+...|+.+.+...+.+..+... .++..... .....+...|+++.|..+++.+.+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34667777778888888887777766554321 22322222 22334677899999999999988874 334444442
Q ss_pred -HHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 290 -LIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 290 -l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
........+....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 222222345666666666653232 23344556678889999999999999999976 5666778888999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHhhcCCHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKI--EHYGCLVDLLGRAGRLDQALNIIEEM-PMKP--D-AKIW-G--SLLSSCRTYSNLEI 436 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~~~~~~ 436 (541)
+++|...+++........|+. ..|..+...+...|++++|..++++. ...| . .... . .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988743222332 34567888999999999999999996 2233 1 1111 1 22222334443332
Q ss_pred HHHH---HHHHhccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 437 AVIA---MEHLLVLEPED--TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 437 a~~~---~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
+.+. ........+.. .......+.++...|+.++|..+++.+........ . ....+..
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-~----------------~~~~~~~ 306 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-D----------------NKQPARD 306 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC-c----------------hhhhHHh
Confidence 2222 12111111221 22223577778899999999999999876432210 0 0112344
Q ss_pred hHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 512 KDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..+....+.++...|+.++|.+.+.+++
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667888889999999999988887654
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.9e-05 Score=76.71 Aligned_cols=379 Identities=13% Similarity=0.123 Sum_probs=228.8
Q ss_pred ChhhHHHHHHhccChhHHHHHHHHHHHhccC--CchhHHHHHHHHHHcCCChHHHHHHHhcCC-CCCcch-----HHHHH
Q 048358 13 LEDRFVPILQSCENLIELKKIHTQILKYLLS--QSNFLVTKMIDVCNSGGDLAYASLLFKQVK-EPNVFL-----YNAMI 84 (541)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~-----~~~ll 84 (541)
|...+..+|..-...+ +++.++++..+++ .|+...+..+.++...+-+.+-.++++++. ++++++ -|.++
T Consensus 951 D~~LW~~VL~e~n~~r--RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 951 DPDLWAKVLNEENPYR--RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI 1028 (1666)
T ss_pred ChHHHHHHHhccChHH--HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH
Confidence 4444555553322222 5777777777764 467788888999999999999999999886 344443 33333
Q ss_pred HHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc
Q 048358 85 RAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK 164 (541)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 164 (541)
-...+. +.....+..+++-..+ .|+ +...+...+-+++|..+|... ..+....+.|+. .
T Consensus 1029 LtAika-d~trVm~YI~rLdnyD------a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~ 1087 (1666)
T KOG0985|consen 1029 LTAIKA-DRTRVMEYINRLDNYD------APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---N 1087 (1666)
T ss_pred HHHhhc-ChHHHHHHHHHhccCC------chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---H
Confidence 333332 3445555555554433 233 344555666677777777543 334444444443 2
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 165 CDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
-+.++.|.+.-++..+| ..|..+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.+++-.+++...++..
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 45677777777776554 35777777777788888877776554 355677777888888888888777777666655
Q ss_pred CCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH--------------------------HHHHHHHHHhcC
Q 048358 245 IEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI--------------------------CNALIEMYIKCG 298 (541)
Q Consensus 245 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~g 298 (541)
-.|... +.++-+|++.+++.+.+.++. -|+..- |..|...+...|
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455443 356666777776665554432 233333 334444444444
Q ss_pred CHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 299 CINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 299 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
+++.|...-++. .+..+|...-.+|...+.+.-| +|...++-....-...++.-|...|-+++.+.+++....
T Consensus 1235 eyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 444444433321 3566788877777776665544 333333445556678899999999999999999988763
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC------CCHHHHHHHHHHHhhcCCHHHH
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMK------PDAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~------p~~~~~~~l~~~~~~~~~~~~a 437 (541)
- -......|+.|.-.|.+- ++++..+.++-. .+. -....|.-++..|.+-..++.|
T Consensus 1308 L--ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1308 L--ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred h--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 133456677777777664 455555444332 211 1234455555555555555544
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=4.8e-06 Score=80.81 Aligned_cols=261 Identities=15% Similarity=0.118 Sum_probs=135.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHH
Q 048358 191 SGYARLGQMKKARMLFDKMPYTTIV--SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
.+......|.+|+.+++.+...++. -|..+...|...|+++.|.++|.+.- .++..+..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3444455666666666655544332 34555566666666666666665431 123345556666666666
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP 348 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 348 (541)
.++-.+.. |.......|-+-..-+-..|++.+|.++|-.+..|+. .|..|-+.|..+..+++..+-... .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 65544332 2333444555555556666666666666666666653 255566666666666555442211 1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-C---HHHHH--
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-D---AKIWG-- 422 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~---~~~~~-- 422 (541)
-..|-..+..-+...|++..|...|-+... |.+-++.|...+.+++|.++-+.-+-.. . ...|.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 123444555556666666666665554432 3344455555555555555544331100 0 01111
Q ss_pred -----------------HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 423 -----------------SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 423 -----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.-+...+..+-++-|.++-+-..+. .-+.+...++..+...|++++|-+-+-+..+.+
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1111123344444444444333332 234566677777888888888877666655544
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1e-06 Score=86.36 Aligned_cols=403 Identities=14% Similarity=0.088 Sum_probs=238.2
Q ss_pred CCcchHHHHHH--HHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh-C----
Q 048358 75 PNVFLYNAMIR--AYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKF-G---- 147 (541)
Q Consensus 75 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g---- 147 (541)
-|..+-..+++ .|..-|+.+.|.+-.+..... ..|..+.+.|.+..+++-|.-.+..|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~-----------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD-----------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh-----------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 45555555553 355667777776666554332 35666777777666666665555444321 1
Q ss_pred ----CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-chHHHHHH
Q 048358 148 ----LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI-VSWTAMIS 222 (541)
Q Consensus 148 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~ 222 (541)
-.++ .+-..+.......|.+++|+.+|++.. -|..|-..|...|.+++|.++-+.-.+-.. .||.....
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-----R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK-----RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 1122 333344445567789999999998864 355566677788999999888665332221 46777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHH
Q 048358 223 GYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQ 302 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (541)
-+-..++.+.|++.|++.. .|-...+..+. .++...+++.+.+ .|...|..-...+...|+.+.
T Consensus 867 ~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 7777888999999988753 22111111111 1222222222222 245667777777778888888
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc--
Q 048358 303 ASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-- 380 (541)
Q Consensus 303 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 380 (541)
|+.+|.... -|.+++...|-+|+.++|-.+-++ .-|......|.+.|...|++.+|...|-+.+.-.
T Consensus 931 Al~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 931 ALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred HHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888887654 366677777778888888777554 2356667778888888888888888877665310
Q ss_pred ---CCCCcHhHHHHHHHHHHh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH--------Hh--
Q 048358 381 ---HIEHKIEHYGCLVDLLGR--AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEH--------LL-- 445 (541)
Q Consensus 381 ---~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~-- 445 (541)
-...+. -..|...... ..+.-.|.++|++.+...+ ..+-.|.+.|.+.+|+++.=+ ++
T Consensus 1000 IRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1000 IRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 000111 1223333332 2344456677777753222 223346677777777664211 11
Q ss_pred ccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHhhh----------CCCccCCceeEEEEcCEEEEEEeCC-CCCCCh--
Q 048358 446 VLEPE-DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS----------KSMKKTPGCSLIEVNNEVQEFVSGD-DTKPFL-- 511 (541)
Q Consensus 446 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~-- 511 (541)
.++|. ||..+..-++.+....++++|..++-..++ +|++.+ ..+++.+.-. ...|+.
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt---------ee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT---------EEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh---------HHHHHhcCcCcCCCccHHH
Confidence 23443 677888888889999999999988766543 233221 1122222222 244544
Q ss_pred -hHHHHHHHHHHHHHhcccCCcccccc
Q 048358 512 -KDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 512 -~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
..++..++.+-.++|.+-.|...+-|
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 34566777777788877666555443
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=9.4e-08 Score=77.58 Aligned_cols=124 Identities=7% Similarity=-0.097 Sum_probs=93.1
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
.+++...+. .|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~~---~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV---DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc---CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555442 3443 455677778888888888888877 5555 56777888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHH
Q 048358 449 PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQ 525 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 525 (541)
|.++.++..++.++.+.|++++|...++.... ..|+++..+...+++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--------------------------~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--------------------------MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHH
Confidence 88888888888888888888888888888765 3567777777776665544
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=2.4e-07 Score=79.52 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=109.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3456777777776544432221 11 0122356777788888877764 36778888999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSS-CRTYSN--LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
+++|...|++. ...| +...+..+..+ +...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998887 5566 56667777766 466676 5899999999999999999999999999999999999999999
Q ss_pred HhhhCC
Q 048358 477 LIRSKS 482 (541)
Q Consensus 477 ~m~~~~ 482 (541)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 987754
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=7.8e-07 Score=76.94 Aligned_cols=303 Identities=13% Similarity=0.066 Sum_probs=155.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--CcchHHH-HHHHHHhcC
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTDR---DIVAWNNLISGYARLGQMKKARMLFDKMPYT--TIVSWTA-MISGYTHIG 228 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g 228 (541)
+.+.+..+.+..++..|.+++..-.++ +......+..+|-...++..|-..++++... ...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455555566677777777777665542 4455666677777777777777777776532 2222221 234455666
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 229 SYAEALDVFRQMQMVGIEPDEISIVSVLPA--CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 777777777666532 332222222222 23445555555555544321 1334444444455566666666666
Q ss_pred HHccCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 307 FDQMVER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDIT----FIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 307 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|+...+- ....||..+. +.+.++++.|+++..+++++|++..+.. -.-.+++- ..|+.. .+..
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~---~lh~---- 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTL---VLHQ---- 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchH---HHHH----
Confidence 6665442 2334544433 3344666666666666666665432210 00000000 000000 0000
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP----MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.--+..+|.-...+.+.|+++.|.+-+.+|+ -..|++|...+.-. -..+++....+-+.-+++++|-.+++
T Consensus 238 ----Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 238 ----SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred ----HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHH
Confidence 0001223333444556677777777777773 22355555554332 12344555555555566666666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
+..++-.|++..-++-|-.++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 77777777777666666665543
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=6.8e-08 Score=97.97 Aligned_cols=131 Identities=14% Similarity=0.067 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~ 425 (541)
.+...+..|.......|.+++|..+++.+.+. .|.+......++..+.+.+++++|+..+++. ...|+. .....+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34445555555555555555555555555542 2333444445555555555555555555554 334432 3333333
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555554455555555555555555555555555555443
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=6.5e-07 Score=89.59 Aligned_cols=435 Identities=13% Similarity=0.056 Sum_probs=263.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHH
Q 048358 92 LYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEA 171 (541)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 171 (541)
+...|+..|-+..+.. +.=...|..|...|....+...|.+.|+.+.+.+ ..+........+.|++..+++.|
T Consensus 473 ~~~~al~ali~alrld------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hHHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 3666777776666654 3334678888888888778888999998887764 34566777888999999999999
Q ss_pred HHHHhhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 172 HKVFEEMTDRD-----IVAWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 172 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
..+.-...+.+ ...|....-.|.+.++...|..-|+...+ .|...|..++.+|...|++..|+++|.+....
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 88855444421 12344445557778888888888887654 35578888999999999999999999887654
Q ss_pred CCCCChHHHHHHH--HHHHccCChHHHHHHHHHHHHhC------CCccHhHHHHHHHHHHhcCCHHHHHHHHHccC----
Q 048358 244 GIEPDEISIVSVL--PACAQLGSLELGEWIHMYCDKNH------LLRRTVICNALIEMYIKCGCINQASQLFDQMV---- 311 (541)
Q Consensus 244 ~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 311 (541)
.|+. +|...- ..-+..|.+.++...+..+.... ..--..++-.+...+.-.|-..+|..+++.-.
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5543 333322 23456788888877777665431 11112222223333333333333333333221
Q ss_pred -------CCChhHHHHHHHHHHh---cC-C-h-HHHHHH-HHHHHhCCCC--------------------CCHHHHHHHH
Q 048358 312 -------ERDVVSWSTVIGGLAN---HG-K-A-HKAIHL-FHEMQRLKVP--------------------PNDITFIGLL 357 (541)
Q Consensus 312 -------~~~~~~~~~l~~~~~~---~~-~-~-~~a~~~-~~~m~~~~~~--------------------p~~~~~~~l~ 357 (541)
..+...|-.+.++|.- .. + + .....+ +.+....+.- .+..+|..++
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 1122222222221110 00 0 0 000000 1111111111 1122333333
Q ss_pred HHHhc-------c-CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 358 SACAH-------T-GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 358 ~~~~~-------~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
..|.+ . .+...|+..+....+. -..+..+|+.|.-. ...|.+.-|..-|-+- ...| ...+|..+.-.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecccee
Confidence 33222 1 2234567777766653 24566667766655 5567777777766555 2334 66888888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH--hhhCCCccCCcee-E-----EEEcC-EE
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL--IRSKSMKKTPGCS-L-----IEVNN-EV 498 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~-~-----~~~~~-~~ 498 (541)
+....+++.|...|.+...++|.+...|...+.+....|+.-++..+|.. ....+-...+++. | ++..+ ..
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999988887 2222222222211 1 11111 11
Q ss_pred EEEEeCC--------------CCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 499 QEFVSGD--------------DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 499 ~~~~~~~--------------~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
+.++... +.+|+...+|...+...++++.+++|.+...+.|
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1111000 5699999999999999999999998877654433
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=6.1e-08 Score=86.87 Aligned_cols=183 Identities=14% Similarity=0.055 Sum_probs=108.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-hHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND---ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHY 389 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 389 (541)
....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++.+.+...-.|.. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566666677777777777777777776643 2222 345566667777777777777777776643111111 123
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 390 GCLVDLLGRA--------GRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 390 ~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
..+..++... |++++|.+.|+++ ...|+. ..+..+..... .... . ......++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~---~----------~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR---L----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH---H----------HHHHHHHH
Confidence 3344444332 4455555555544 222322 11111111000 0000 0 01123567
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccc
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
..|.+.|++++|...++...+... .+|..+.++..++.++..+|+.++|.+.++.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYP-----------------------DTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCC-----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999876532 2477789999999999999999999987654
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=3.5e-07 Score=81.99 Aligned_cols=182 Identities=12% Similarity=0.011 Sum_probs=133.1
Q ss_pred ccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---H
Q 048358 282 RRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DV---VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI---T 352 (541)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ 352 (541)
.....+..++..+...|+++.|...|+++.. | ++ .++..+..++...|++++|...++++.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 4566788889999999999999999998854 2 22 467778899999999999999999998864 22222 4
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 048358 353 FIGLLSACAHT--------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSL 424 (541)
Q Consensus 353 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 424 (541)
+..+..++... |+++.|.+.|+.+...+ +.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 55556666554 78999999999998753 333333322221111 11100 0111245
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...+.+.|++++|+..++++++..|++ +..+..++.++.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566889999999999999999887654 478999999999999999999999888654
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=6.1e-07 Score=76.63 Aligned_cols=156 Identities=16% Similarity=0.094 Sum_probs=93.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhc
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTY 431 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 431 (541)
..+-..+...|+-+....+....... .+.+......++....+.|++..|...|++. .-.+|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 44445555556655555555554432 2344444455666666677777777666666 2334566666666667777
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
|+++.|...|.+++++.|.++..++.|+..|.-.|+.+.|..++......+ |.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--------------------------~ad 201 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--------------------------AAD 201 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--------------------------CCc
Confidence 777777777777777777767777777777777777777776666654432 234
Q ss_pred hHHHHHHHHHHHHHhcccCCcccccc
Q 048358 512 KDIFWLLELLALHQDRAKDVIDIMYE 537 (541)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 537 (541)
+.+...|..+.-.+|+.++|.++..+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccc
Confidence 44555555555555555555555444
No 112
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=5.7e-07 Score=82.93 Aligned_cols=204 Identities=12% Similarity=0.042 Sum_probs=139.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG-FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
+..+-..+...++.++|+.+..++++.. +-+..+|+.-..++...| ++++++..++.+.+.+ +.+..+|+.-...+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 3334445566788999999999988864 334445555555555666 6799999999998753 56666777666666
Q ss_pred HhcCCH--HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCH-
Q 048358 397 GRAGRL--DQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH---GRW- 468 (541)
Q Consensus 397 ~~~g~~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 468 (541)
.+.|+. ++++.+++++ ...| +..+|.....++...|+++++++.++++++.+|.|..+|+..+.++.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 677763 6788888777 5556 6789999999999999999999999999999999999999999888775 333
Q ss_pred ---HHHHHHHHHhhhCCCccCCcee---EEEEc--------CEEEEEEe-CCCCCCChhHHHHHHHHHHHH
Q 048358 469 ---EDVSRMRKLIRSKSMKKTPGCS---LIEVN--------NEVQEFVS-GDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 469 ---~~A~~~~~~m~~~~~~~~~~~~---~~~~~--------~~~~~~~~-~~~~~p~~~~~~~~l~~~~~~ 524 (541)
+++....+++....+...+.+. ++... .....++. ....+|+++.++..|..+|..
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 4566777666554332222110 00000 00111111 124678888888888888875
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=5.3e-08 Score=91.71 Aligned_cols=217 Identities=18% Similarity=0.200 Sum_probs=162.6
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
..-+.+.|++.+|.-.|+..++. +...|.-|.......++-..|+..+++..+.. +-|......|.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44567889999999999988665 45688899999999999999999999999976 667788888889999999999
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHH---------HHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCCH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLV---------DLLGRAGRLDQALNIIEEM----PMKPDAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~ 434 (541)
.|...++.-.... +|-.. .... ..+..........++|-++ +.++|+.+...|.-.|.-.|++
T Consensus 371 ~Al~~L~~Wi~~~--p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHhC--ccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999998886531 11110 0000 1111222234445555554 4456777888888888999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHH
Q 048358 435 EIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDI 514 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 514 (541)
++|+..|+.++...|.|...|+.|+-.++...+.++|+..|++.++. .|.....
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------------------------qP~yVR~ 500 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------------------------QPGYVRV 500 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------------------------CCCeeee
Confidence 99999999999999999999999999999999999999999998764 3444444
Q ss_pred HHHHHHHHHHHhcccCCccccccc
Q 048358 515 FWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 515 ~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
...||.-+-.+|-++||+..+..+
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHH
Confidence 455555555666666665554443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=8.7e-07 Score=91.70 Aligned_cols=201 Identities=12% Similarity=0.151 Sum_probs=165.2
Q ss_pred CccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 048358 281 LRRTVICNALIEMYIKCGCINQASQLFDQMVER--------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDIT 352 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 352 (541)
|.+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 444567888888889999999999999887442 23478888888777888888899999988753 22456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD---AKIWGSLLSSC 428 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 428 (541)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.++.+-+.|..++.+. ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999999765 66777999999999999999999999886 33343 44455555666
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.+.|+.+++..+|+..+...|...+.|+.+++.-.+.|+.+.++.+|+++...+..+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998887654
No 115
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=6.5e-06 Score=76.02 Aligned_cols=191 Identities=10% Similarity=0.082 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 286 ICNALIEMYIKCG-CINQASQLFDQMVER---DVVSWSTVIGGLANHGKA--HKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 286 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+|+.-..++...| ++++++..++++.+. +..+|+...-.+.+.|+. ++++.+++++.+.. +-|..+|.....+
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~ 151 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3443444444444 456666666665332 334455444444444542 56677777777765 5567777777777
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA---GRL----DQALNIIEEM-PMKP-DAKIWGSLLSSCRT 430 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 430 (541)
+...|+++++++.++++.+.. +.+...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 777788888888888887643 45556666665555443 222 4566666444 5556 56778777777766
Q ss_pred c----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC------------------CHHHHHHHHHHhh
Q 048358 431 Y----SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG------------------RWEDVSRMRKLIR 479 (541)
Q Consensus 431 ~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 479 (541)
. +...+|...+.++.+.+|.++.++..|++.|.... ..++|.++++.+.
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred CCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2 44567888999988888999999999999998743 2467888888873
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.1e-06 Score=83.42 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=162.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCC
Q 048358 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGK 330 (541)
Q Consensus 253 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 330 (541)
..+...+...|-...|..+++.. ..|...+.+|+..|+..+|..+..+-.+ |++..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34455566677777777777643 4566778888888888888887766543 577778877777776666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
+++|.++.+..... .-..+.......++++++.+.|+.-.+-+ +....+|-.+..+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888877654332 11122222334688899998888877643 5566778888888999999999999888
Q ss_pred hC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 411 EM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 411 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.. ...|| ...|+++-.+|.+.|+..+|...+.++++-+-.+...|....-.....|.|++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77 66775 58899999999999999999999999999888888899999999999999999999999887653
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=2.2e-06 Score=73.63 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=122.1
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 048358 290 LIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEG 369 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 369 (541)
-+-.|...|+++.+....+.+..+. ..+...++.+++...+++....+ +.|...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888887765554433221 01223567788888888888876 78888999999999999999999
Q ss_pred HHHHHHhhhhcCCCCcHhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 370 LMYFDSMKRDHHIEHKIEHYGCLVDLL-GRAGR--LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
...|++..+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999874 356778888888864 67777 59999999998 6666 5677888888899999999999999999
Q ss_pred hccCCCCcchHH
Q 048358 445 LVLEPEDTGNYV 456 (541)
Q Consensus 445 ~~~~~~~~~~~~ 456 (541)
++..|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988665443
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=4.4e-07 Score=73.63 Aligned_cols=123 Identities=9% Similarity=0.014 Sum_probs=100.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM 414 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 414 (541)
.+|++..+. .|+. +..+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666654 3543 555677888899999999999998874 3667888899999999999999999999988 55
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 415 KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 415 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.| +...+..+..++...|+.++|+..|+++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 56 678888899999999999999999999999999999888877766543
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.8e-05 Score=65.25 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=93.4
Q ss_pred HHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 048358 272 HMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI 351 (541)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 351 (541)
.+.+.......+......-...|+..|++++|.+..... .+......=...+.+..+.+-|...+++|.+. .+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 333333333333333333345566677777777766662 22222222334455566667777777777663 2555
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 048358 352 TFIGLLSACAH----TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLL 425 (541)
Q Consensus 352 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 425 (541)
|.+.|..++.+ .+.+..|.-+|+++..+ .+|+..+.+....++...|++++|..+++.. +...++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66656555443 34566666666666653 3566666666666666666666666666665 2223455555555
Q ss_pred HHHhhcCCH-HHHHHHHHHHhccCCCCc
Q 048358 426 SSCRTYSNL-EIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 426 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 452 (541)
......|.. +-..+.+.++....|.++
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 443333433 334445555555555543
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.4e-05 Score=68.43 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=160.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (541)
++-+.-.|.+..++..-...... +-+...-.-+.++|...|.......- +.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566678888877666554432 23344444456667777765433222 22222 33344444444444445554
Q ss_pred HHHHH-HHHccCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 301 NQASQ-LFDQMVER----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 301 ~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
+.-.. +.+.+..+ +......-...|+..+++++|++..... -+......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333332 2233333345688899999999988762 1233333345556678889999999999
Q ss_pred hhhhcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLG----RAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
|..- .+..+.+.|..++. ..+.+.+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9862 45556666666665 356789999999999 4778999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHH-HHHHHhh
Q 048358 450 EDTGNYVLLSNIYAKHGRWEDVS-RMRKLIR 479 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~ 479 (541)
.+++++..++.+-...|...++. +.+..++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999988888888776654 4455544
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=6.4e-06 Score=70.53 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=105.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
..+-..+...|+-+....+........ +.+.......+......|++..|+..+.+... .-++|...|+.+.-+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 444555666666666666665544322 33334444566667777777777777777765 446777777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.|+++.|..-|.+. .+.| ++...+.+.-.+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777776665 4445 456666777777777777777777777777666677777777777777777777776654
Q ss_pred H
Q 048358 477 L 477 (541)
Q Consensus 477 ~ 477 (541)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=6.4e-06 Score=80.20 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=104.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHH
Q 048358 191 SGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEW 270 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 270 (541)
..+...|-...|..+|++. ..|..++.+|...|+..+|..+..+-.+. +||...|..+........-+++|.+
T Consensus 406 ell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawE 478 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWE 478 (777)
T ss_pred HHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHH
Confidence 3344444444444444443 34555555555555555555555555442 4555555555444444444444444
Q ss_pred HHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 048358 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP 347 (541)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 347 (541)
+.+..-. ..-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.+.|....... +
T Consensus 479 lsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-P 550 (777)
T KOG1128|consen 479 LSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-P 550 (777)
T ss_pred HhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-C
Confidence 4443221 11122222223345566666666544332 23355555555556666666666666555432 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
-+...|+.+-.+|.+.++-.+|...+.+..+- . ..+...|...+......|.+++|++.+.++
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 33455666666666666666666666666553 2 333444555555666666666666665554
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.58 E-value=1.9e-06 Score=68.57 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=86.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+....-.+...+...|++++|.++|+-. .+.| +..-|..|..++...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556777788999999999999998 6667 5677888888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
...|+.+.|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=7.9e-08 Score=55.40 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=27.4
Q ss_pred hccCCchhHHHHHHHHHHcCCChHHHHHHHhcCC
Q 048358 40 YLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK 73 (541)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 73 (541)
.|+.||..+||.||..|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=7.7e-06 Score=83.34 Aligned_cols=160 Identities=10% Similarity=-0.012 Sum_probs=130.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
++..+-.|.......|.+++|..+|+...+.. |-+......++.++.+.+.+++|...++..... -+.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 57888999999999999999999999999874 445567778889999999999999999999974 466778889999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
.++...|++++|..+|++. ...| +..++..+..++...|+.++|...|+++++...+-...|+.++ ++...-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 235 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNAD 235 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHH
Confidence 9999999999999999998 3345 4789999999999999999999999999987755445544433 334444
Q ss_pred HHHHHHhhhCC
Q 048358 472 SRMRKLIRSKS 482 (541)
Q Consensus 472 ~~~~~~m~~~~ 482 (541)
...++++.-++
T Consensus 236 ~~~~~~~~~~~ 246 (694)
T PRK15179 236 LAALRRLGVEG 246 (694)
T ss_pred HHHHHHcCccc
Confidence 55666654443
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.4e-07 Score=54.37 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=25.5
Q ss_pred CCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 147 GLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 147 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
|+.||..+|+.|+.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677778888888888888888888887777763
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=3.9e-05 Score=80.07 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=163.9
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---ccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-C-hhHHHHH
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNH-LL---RRTVICNALIEMYIKCGCINQASQLFDQMVER-D-VVSWSTV 321 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 321 (541)
+...|...|......++.++|.++.+++...- +. --...|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44456666666777777777777777666531 11 11346777777777778888888888888663 3 3578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.+..+...-........-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88999999999999999999875 24566788888888889888899999998888742111245555666677778899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcc-hHHHHHHHHHhcCCHHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTG-NYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.+.+..+|+.. .-.| -...|+..+..-.++|+.+.+..+|++++.+. |.... .|...+..--+.|+-+.++.+-.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 99999999887 3334 56788889999899999999999999998766 33333 44445554445577665555544
Q ss_pred Hh
Q 048358 477 LI 478 (541)
Q Consensus 477 ~m 478 (541)
+.
T Consensus 1696 rA 1697 (1710)
T KOG1070|consen 1696 RA 1697 (1710)
T ss_pred HH
Confidence 43
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=2.4e-05 Score=66.47 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHHccCC--------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCcH
Q 048358 297 CGCINQASQLFDQMVE--------RDVV-SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL-LSACAHTGFW 366 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~--------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~ 366 (541)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|..+++++...= |...-...+ .--+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4567777777776622 2222 34455556667788888888888877652 333322222 2234456888
Q ss_pred HHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 367 NEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
++|+++|+.+..+. |.|..++..-+...-..|+.-+|++-+.+. .+-.|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888753 666777777777777778877887776665 44457888888888888888888888888888
Q ss_pred hccCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHhhh
Q 048358 445 LVLEPEDTGNYVLLSNIYAKHG---RWEDVSRMRKLIRS 480 (541)
Q Consensus 445 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 480 (541)
+=..|-++..+..+++.+.-.| +.+-|.+++.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888888888888888776655 45556667766544
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=4.2e-06 Score=67.60 Aligned_cols=97 Identities=23% Similarity=0.352 Sum_probs=70.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444556667777777777777777776 3334 4566666777777778888888888887777777777888888888
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888776654
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=7.5e-05 Score=69.80 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=100.1
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 436 (541)
.+...|.++.|+..++.+.+. .|.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 445568999999999998874 4667777778888999999999999999988 66776 5667777888999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|+..+++....+|+++..|..|+.+|...|+..+|.....+...
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888777666544
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.4e-05 Score=64.95 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=149.0
Q ss_pred ccCChHHHHHHHHHHHHh---C-CCccHh-HHHHHHHHHHhcCCHHHHHHHHHccCC--CCh-hHHHHHHHHHHhcCChH
Q 048358 261 QLGSLELGEWIHMYCDKN---H-LLRRTV-ICNALIEMYIKCGCINQASQLFDQMVE--RDV-VSWSTVIGGLANHGKAH 332 (541)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~ 332 (541)
...+.++..+++..+... | ..++.. +|..++-+....|+.+.|..+++.+.. |+. .+-..-...+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 445778888888877642 3 334433 466677778889999999999998744 322 22111222345579999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 333 KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+|+++|+.+.+.+ |.|..++-.=+...-..|+--+|++-+.+..+. +..|...|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987 667777776666667778888999999988874 5889999999999999999999999999998
Q ss_pred -CCCC-CHHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 413 -PMKP-DAKIWGSLLSSCRT---YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 413 -~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
-+.| ++..+..+...+.- ..+.+.+..+|++++++.|.+...+..+-.+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 4566 55666677766433 34678899999999999997766655554443
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0017 Score=61.73 Aligned_cols=394 Identities=10% Similarity=0.113 Sum_probs=215.3
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
-|..+|+.||+-+..+ .++++.+.++++...- +-.+..|..-++.-....+++....+|...+..-+ +...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDL 88 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF------PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDL 88 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhH
Confidence 4788999999987766 9999999999998753 55677888889999999999999999999887644 4556
Q ss_pred HHHHHHHHHc-CCChHHHH----HHHhhcCC------CChhhHHHHHHH---------HHhcCCHHHHHHHHhcCCCC--
Q 048358 155 ENALLDLYGK-CDELIEAH----KVFEEMTD------RDIVAWNNLISG---------YARLGQMKKARMLFDKMPYT-- 212 (541)
Q Consensus 155 ~~~l~~~~~~-~g~~~~A~----~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~-- 212 (541)
|...++--.+ .|+...+. +.|+-..+ .+-..|+..+.- |..+.+++...+++.++...
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 6555543322 23333322 22222211 233345544432 34455677778888887632
Q ss_pred -Cc-------chHHHHHHH-------HHhcCChHHHHHHHHHHHH--CCCCCChHH---------------HHHHHHHHH
Q 048358 213 -TI-------VSWTAMISG-------YTHIGSYAEALDVFRQMQM--VGIEPDEIS---------------IVSVLPACA 260 (541)
Q Consensus 213 -~~-------~~~~~l~~~-------~~~~g~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~ 260 (541)
|+ ..|..=|.. --+...+..|.+++++... .|......+ |..+|. +-
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wE 247 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WE 247 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HH
Confidence 11 122211111 1123456667777777654 232221111 211111 11
Q ss_pred ccCChH---------HHHHHHHHHHH-hCCCccHhH-----HHHHHHHHHhcCC-------HHHHHHHHHccCCC----C
Q 048358 261 QLGSLE---------LGEWIHMYCDK-NHLLRRTVI-----CNALIEMYIKCGC-------INQASQLFDQMVER----D 314 (541)
Q Consensus 261 ~~~~~~---------~a~~~~~~~~~-~~~~~~~~~-----~~~l~~~~~~~g~-------~~~A~~~~~~~~~~----~ 314 (541)
+.+.+. ...-++++... .+..|+.-. +....+.+...|+ .+++..+++..... +
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111110 11111221111 122222110 0011122333333 23344444433221 2
Q ss_pred hhHHHHHHHHHH---hcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH
Q 048358 315 VVSWSTVIGGLA---NHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG 390 (541)
Q Consensus 315 ~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (541)
..+|..+...-- ..+..+...+++.++...- +.| ..+|..+++.-.+..-++.|..+|.++.+......++.++.
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 223333222111 1113455556666655432 233 34566777777777778888888888877533333666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhcc--CCC-CcchHHHHHHHHHhc
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVL--EPE-DTGNYVLLSNIYAKH 465 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~ 465 (541)
+++..|+ .++.+-|.++|+-- ..-+|. ..-...+.-+...++-..+..+|++++.. .|+ ....|..++..-..-
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 7776665 46777888888764 333433 33445556667778888888888888765 222 346788888777778
Q ss_pred CCHHHHHHHHHHhhh
Q 048358 466 GRWEDVSRMRKLIRS 480 (541)
Q Consensus 466 g~~~~A~~~~~~m~~ 480 (541)
|+...+.++-+++..
T Consensus 486 GdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFT 500 (656)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888777666543
No 133
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.40 E-value=0.0018 Score=60.18 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=116.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHcc--CCCChhHH-------HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQM--VERDVVSW-------STVIGGLAN----HGKAHKAIHLFHEMQRLKVPPND 350 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~ 350 (541)
..++..++....+.++...|...+.-+ .+|+...- ..+-+..+. .-+...-+.+|......++...
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq- 376 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ- 376 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-
Confidence 346677777778888888887776654 33432211 111122221 1123333456666655442211
Q ss_pred HHHHHH---HHHHhccCc-HHHHHHHHHHhhhhcCCCCcHhHHHHHHH----HHHh---cCCHH---HHHHHHHhCCCCC
Q 048358 351 ITFIGL---LSACAHTGF-WNEGLMYFDSMKRDHHIEHKIEHYGCLVD----LLGR---AGRLD---QALNIIEEMPMKP 416 (541)
Q Consensus 351 ~~~~~l---~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~---~A~~~~~~~~~~p 416 (541)
.....| ..-+.+.|. -++|+.+++.+.+- -+-|..+-|.+.. .|.. ...+. +-..+.++.++.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 111122 233455555 78899999988863 2334443333221 1211 11112 2233445556655
Q ss_pred ----CHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 417 ----DAKIWGSLLSS--CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 417 ----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+...-+.|..| +..+|++.++.-.-..+.++.| ++.+|..++-++....++++|..++..++-
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 45567777777 6789999999999999999999 799999999999999999999999998764
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=0.00022 Score=73.76 Aligned_cols=151 Identities=7% Similarity=0.043 Sum_probs=85.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
.++..++.+|-+.|+.++|..+++++++.. +-|....+.+...++.. ++++|.+++..++.. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 356667777778888888888888877765 44555666666666666 666666666555433 4
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
...+++..+..++.++..-++.- ++.-..+.+.+... |..--..++..+-..|...+++++++.++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44556666666666654433321 12222222222222 22223344555556666677777777777
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
+.+.+. -+.|.....-++..|.
T Consensus 247 K~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhc--CCcchhhHHHHHHHHH
Confidence 777653 2334444455555554
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=1.3e-05 Score=64.65 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048358 337 LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK 415 (541)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 415 (541)
.|++..... +.+......+...+...|++++|.+.|+.+.... +.+...+..+...+...|++++|...++.. ...
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555543 3344556667777888899999999998887742 557777888889999999999999988887 445
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
| +...+..+...+...|++++|...++++++..|++....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 567777778888899999999999999999988876533
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=1e-05 Score=76.28 Aligned_cols=124 Identities=14% Similarity=0.179 Sum_probs=101.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRT 430 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 430 (541)
...|+..+...++++.|+.+|+++.+. .|+. ...++..+...++-.+|.+++++. ...| +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667778899999999998874 2554 455788888888888898888877 3344 55666666667899
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|+++.|+..++.++..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999998743
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00019 Score=74.27 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=55.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
.....++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+++++.+.. +.|+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 33334443344444444432 2233345555556666666666666666666655 44555566666666555 66666
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 048358 304 SQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL 344 (541)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 344 (541)
.+++.+.+ ..+...+++.++.++|.++...
T Consensus 169 ~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 169 ITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 65554322 2244445555555555555554
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=1.6e-06 Score=69.09 Aligned_cols=108 Identities=8% Similarity=0.005 Sum_probs=92.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
..+..+.+.-+......+...+...|++++|..+|+-+...+|.+...|..|+-++...|++++|+..|.....
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~------ 97 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ------ 97 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------
Confidence 33444433334555666677788999999999999999999999999999999999999999999999998754
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 487 PGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
++|+++.++..++..+..+|+.+.|.+.++.+|.
T Consensus 98 --------------------L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 98 --------------------IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred --------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999998887763
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0043 Score=62.67 Aligned_cols=408 Identities=13% Similarity=0.065 Sum_probs=215.3
Q ss_pred HcCCChHHHHHHHhcCCC-CCcchHHHHHHHH--HcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCc
Q 048358 57 NSGGDLAYASLLFKQVKE-PNVFLYNAMIRAY--TNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP 133 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 133 (541)
...+++..|++..+++.+ .....|..++.++ .+.|+.++|..+++.....+ ..|..|...+-.+|.+.+..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~------~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK------GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC------CCchHHHHHHHHHHHHHhhh
Confidence 345777778877777664 2223455555554 47788888887777766554 34677777777777888888
Q ss_pred hHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHH----HHHHHhhcCCCChhhHHHHHHHHHhcC----------CH
Q 048358 134 SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIE----AHKVFEEMTDRDIVAWNNLISGYARLG----------QM 199 (541)
Q Consensus 134 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~ 199 (541)
++|..+|+...... |+......+..+|.|.+++.+ |.+++...++ +...+-+++..+.+.- -.
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhH
Confidence 88888888877653 446666667777777776654 4555554433 3333334444443311 11
Q ss_pred HHHHHHHhcCCCCC-c-ch---HHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCChHHHHHHHHHHHccCChHHHHHHHH
Q 048358 200 KKARMLFDKMPYTT-I-VS---WTAMISGYTHIGSYAEALDVFRQ-MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHM 273 (541)
Q Consensus 200 ~~A~~~~~~~~~~~-~-~~---~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 273 (541)
.-|.+.++.+.+.+ . .+ ...-...+-..|.+++|++++.. ..+.-...+...-+.-+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23444555444332 1 11 11112233456677777777733 3332223333333455566667777777777777
Q ss_pred HHHHhCCCccHhHHHHHHHHHH----------------hcCCHHHHHHHHHccCCC-ChhHHHHHHHHHH---hcCChHH
Q 048358 274 YCDKNHLLRRTVICNALIEMYI----------------KCGCINQASQLFDQMVER-DVVSWSTVIGGLA---NHGKAHK 333 (541)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~ 333 (541)
++...|... |...++.+. ..+..+...+..++.... .-..|-+-+.++. .-|+.++
T Consensus 251 ~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 251 RLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHH
Confidence 776665332 222222111 111222222222222111 1112222222222 2355555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh-------HHHHHHHHHHhcCC-----
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE-------HYGCLVDLLGRAGR----- 401 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~----- 401 (541)
+.-.|-+ +-|-.| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|.
T Consensus 327 ~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 327 MLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 4433322 112122 2222233333333444445555554432 12211 02222222223332
Q ss_pred HHHHHHHHHhC------C------CCCCH---------HHHHHHHHHHhhcCCHH---HHHHHHHHHhccCCCCcchHHH
Q 048358 402 LDQALNIIEEM------P------MKPDA---------KIWGSLLSSCRTYSNLE---IAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 402 ~~~A~~~~~~~------~------~~p~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
.+.-..++.+. + .-|+. .+.+.|+..+.+.++.. +|+-+++..+..+|.|..+-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 22223333222 1 12322 23456677788887754 6777888888899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 458 LSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
++++|.-.|-+..|.++|+.+--+++..
T Consensus 479 LiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 479 LIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 9999999999999999999987666543
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=2.4e-05 Score=73.80 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..... +-+......-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 445567777778899999999999988877778888888888889999999999988764 4455666666777889999
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP 416 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 416 (541)
++.|+.+.+++... .|.+..+|..|..+|...|+++.|+..++.++..|
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999873 45667799999999999999999999999987554
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.0035 Score=59.61 Aligned_cols=423 Identities=11% Similarity=0.090 Sum_probs=256.1
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~ 119 (541)
+-|..+|+.||+-+... ..+++++.++++.. .....|..-|..-.+..+++....+|.+.+.. .-+...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-------vLnlDL 88 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-------VLNLDL 88 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HhhHhH
Confidence 45889999999976665 99999999999876 35668999999999999999999999998876 456667
Q ss_pred HHHHHHHHhcc-CCchH----HHHHHHHHH-HhCCCCc-hhhHHHHHHH---------HHcCCChHHHHHHHhhcCC-C-
Q 048358 120 LPFVIKSCAGL-LCPSL----GKQIHAHVC-KFGLKSH-SITENALLDL---------YGKCDELIEAHKVFEEMTD-R- 181 (541)
Q Consensus 120 ~~~ll~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~- 181 (541)
|..-+..-.+. +.... ..+.|+-.+ +.|+.+- ...|+..+.. |....+++...+++.++.. |
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 76666654432 33333 233344333 3454433 2345544433 3344567778888888875 2
Q ss_pred -Ch-------hhHHHHHHH-------HHhcCCHHHHHHHHhcCC--------------CCCc-------chHHHHHHHHH
Q 048358 182 -DI-------VAWNNLISG-------YARLGQMKKARMLFDKMP--------------YTTI-------VSWTAMISGYT 225 (541)
Q Consensus 182 -~~-------~~~~~l~~~-------~~~~~~~~~A~~~~~~~~--------------~~~~-------~~~~~l~~~~~ 225 (541)
|. .+|..=|+. --+...+..|.++++++. ++.+ ..|-.+|.--.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 21 122111111 111334455666555542 0110 12444443222
Q ss_pred hcCC--------hHHHHHHHHH-HHHCCCCCChHHHHH-----HHHHHHccCCh-------HHHHHHHHHHHHhCCCccH
Q 048358 226 HIGS--------YAEALDVFRQ-MQMVGIEPDEISIVS-----VLPACAQLGSL-------ELGEWIHMYCDKNHLLRRT 284 (541)
Q Consensus 226 ~~g~--------~~~A~~~~~~-m~~~~~~p~~~~~~~-----ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 284 (541)
..+- .....-.+++ |.-.+..|+.....+ .-..+...|+. +++..+++.....-...+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0111122222 122234444322111 11123333443 3455555554443333344
Q ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHccCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 048358 285 VICNALIEMYIKCG---CINQASQLFDQMVE----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP-NDITFIGL 356 (541)
Q Consensus 285 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 356 (541)
.+|..+.+.-...- ..+.....++++.. .-..+|...++.-.+..-...|..+|.++.+.+..+ .....+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 44444433222222 24555555555522 234578888888888888999999999999988777 66677888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHhhc
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPD--AKIWGSLLSSCRTY 431 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~ 431 (541)
+.-+|. ++.+-|..+|+.-.+.+ ..++.--...++.+...++-..|..+|++. ++.|+ ...|..++.--..-
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 887775 78999999999988865 344444577888899999999999999998 23443 58899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 432 SNLEIAVIAMEHLLVLEPED----TGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
|+...+..+-++....-|.+ ...-..+++-|.-.+.+..-..-++
T Consensus 486 GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 99999999988887665521 1233445555666665544443333
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=7.1e-06 Score=71.69 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=72.7
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 436 (541)
-..+.++|.+|+..|.+..+- .|-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 355668888888888888763 3556666777777888888888888777766 66674 4778888888888888888
Q ss_pred HHHHHHHHhccCCCCcchHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l 458 (541)
|++.|+++++++|++......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888876444443
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.26 E-value=2e-05 Score=74.66 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 396 LGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444444444444444 2223 233444444444444555555555555555555444455555555555555555555
Q ss_pred HHHHhh
Q 048358 474 MRKLIR 479 (541)
Q Consensus 474 ~~~~m~ 479 (541)
.+++..
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 544443
No 144
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.24 E-value=3.9e-06 Score=58.25 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=48.0
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...|++++|++.|+++++.+|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999988764
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=7.6e-05 Score=60.85 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=61.4
Q ss_pred cCcHHHHHHHHHHhhhhcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 436 (541)
.++...+...++.+.+.++-.+ .......+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4566666666666665431111 1222333445566666666666666665 211322 233344555666667776
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
|+..++.. ...+-.+..+...+++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666542 22233345666667777777777777766654
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00039 Score=65.16 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=104.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
-..-.+...|++++|+..++.++..- |-|..........+.+.++.++|.+.++++.... |.....+-.+..+|.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhc
Confidence 33444556788888998888887763 4444444555677888899999999999888742 33356667788888999
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 400 GRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 400 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
|++.+|+.++++. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|...+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 9999999888887 33346788888888888888877776544 4457777888888877777
Q ss_pred hhhCC
Q 048358 478 IRSKS 482 (541)
Q Consensus 478 m~~~~ 482 (541)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76653
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=3.8e-06 Score=61.11 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PMKP---DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 2222 334444456666666666777666666 555555555566667777777777777766
Q ss_pred HHH
Q 048358 475 RKL 477 (541)
Q Consensus 475 ~~~ 477 (541)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00018 Score=58.67 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGCL 392 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 392 (541)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+.... ..|. ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 34444444 3677777777777777753 333 2233345566777788888888888887642 1222 2234456
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 393 VDLLGRAGRLDQALNIIEEMPMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
...+...|++++|+..++...-. .....+......+.+.|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888888776322 23455556666788888888888888765
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=4.4e-05 Score=59.94 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSN 460 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 460 (541)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|+++.|...++++....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555555555555555554 22222 2334445555566666666666666666555443 334555666
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 048358 461 IYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~ 481 (541)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665543
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=4e-05 Score=57.20 Aligned_cols=93 Identities=25% Similarity=0.322 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677777888888888888876 44443 4666777777888899999999999998888888888889999999999
Q ss_pred CHHHHHHHHHHhhhC
Q 048358 467 RWEDVSRMRKLIRSK 481 (541)
Q Consensus 467 ~~~~A~~~~~~m~~~ 481 (541)
++++|...++.....
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888887654
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=7.5e-06 Score=47.95 Aligned_cols=34 Identities=41% Similarity=0.781 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD 248 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 248 (541)
.+||.++.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=8.6e-05 Score=58.27 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLL 425 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 425 (541)
++..++..+...|++++|...|..+...+.-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566666777777777777777765421111 1334556777777778888887777776 32333 45566677
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.++.+.|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7778888888888888888888887765443
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=0.00012 Score=61.82 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=63.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
...+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777788888888887776 32232 3567777788888999999999999999988888888888888
Q ss_pred HHHhcCC
Q 048358 461 IYAKHGR 467 (541)
Q Consensus 461 ~~~~~g~ 467 (541)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=1.2e-05 Score=55.99 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHhhhC
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG-RWEDVSRMRKLIRSK 481 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 481 (541)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45778888899999999999999999999999999999999999999999 799999999987653
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.3e-06 Score=47.36 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 247 (541)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=5.3e-05 Score=66.36 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=86.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
..-+.+.++|.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+....-. +....+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCc
Confidence 345678899999999999999975 6677778888999999999999999988888632 4457889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKPDAKIWGSLLSS 427 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p~~~~~~~l~~~ 427 (541)
+++|++.|++. .+.|+..+|..=+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999987 888987777655554
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.022 Score=57.86 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=132.7
Q ss_pred HHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCC
Q 048358 56 CNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC 132 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 132 (541)
+.|.|+.++|..+++.... .|..+...+-.+|...++.++|..+|+..... -|+..-...+..+|.+.++
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-------~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-------YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------CCcHHHHHHHHHHHHHHHH
Confidence 4788999999999988764 57778888899999999999999999999887 5778888888889999999
Q ss_pred chHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC----------hHHHHHHHhhcCCCC-----hhhHHHHHHHHHhcC
Q 048358 133 PSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE----------LIEAHKVFEEMTDRD-----IVAWNNLISGYARLG 197 (541)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~ 197 (541)
+..-.++--++.+. ++-+...+-++++.+...-. ..-|.+.++.+.+.+ ..-.......+...|
T Consensus 126 yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 126 YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 88777776666664 45566666677777665421 234556666665533 111222334556688
Q ss_pred CHHHHHHHHhc-----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 198 QMKKARMLFDK-----MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 198 ~~~~A~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
.+++|.+++.. ....+...-+.-+..+...+++.+..++-.++...|
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 89999999832 233344555566778888999999999999988875
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=1.9e-05 Score=54.15 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=50.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...+...|++++|+..|+++++..|.++..+..++.++.+.|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999988764
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00012 Score=64.69 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRT---YSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
|.|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 678889999999999999999999999887 4444 56666677766433 234678999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCccCCce
Q 048358 458 LSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGC 489 (541)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 489 (541)
|+..+...|++.+|...++.|.+.....+|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999998866544443
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=2.3e-05 Score=58.58 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEE
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQ 499 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (541)
++..+...+...|++++|...++++.+..|.++..+..++.++...|++++|.+.++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------------------ 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence 35566777888999999999999999999998889999999999999999999999987653
Q ss_pred EEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 500 EFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 500 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.|.+...+..++.++..+|+.++|.+.+.+.++
T Consensus 64 --------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 64 --------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --------CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 355557889999999999999999888776653
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.96 E-value=0.00042 Score=63.34 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA-CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998654 3445555555444 33357788899999999985 4677888999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 323333 589999999899999999999999999887774
No 162
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.6e-05 Score=46.48 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=28.1
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
.+||.++.+|++.|++++|.++|++|.+.|+ +||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~-----~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGI-----EPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCC
Confidence 3688888888888888888888888888887 776
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=0.00017 Score=68.48 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=72.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 435 (541)
..+...|+++.|++.|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4445567777777777777663 2445566667777777777777777777776 4445 4566666777777778888
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
+|+..|+++++++|.++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888877777777666665554443
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00014 Score=61.05 Aligned_cols=113 Identities=12% Similarity=-0.080 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHH
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
+..+...+..+.+..+.......|..+...+...|++++|...|++. .+.|+ ..++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444444332233334566778888888899999999998887 33332 35788888889999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHH-------hcCCHHHHHHHHHHh
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYA-------KHGRWEDVSRMRKLI 478 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 478 (541)
++++++..|.....+..++.++. ..|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999999998888888888888 888888776666554
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.92 E-value=0.0007 Score=67.15 Aligned_cols=139 Identities=13% Similarity=0.018 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhhhh
Q 048358 313 RDVVSWSTVIGGLAN--H---GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT--------GFWNEGLMYFDSMKRD 379 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~ 379 (541)
.|...|...+.+... . ++...|..+|++..+.. |-+...+..+..++... .++..+.+........
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 466667666665433 2 22667777888777764 33334444433333211 1122233333332221
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
...+.+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 112233344555544455556666666666655 4455555566666666666666666666666666666655
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.4e-05 Score=45.35 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=23.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCC
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPR 108 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 108 (541)
.+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4677777777777777777777777777776
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00092 Score=61.27 Aligned_cols=154 Identities=13% Similarity=0.065 Sum_probs=107.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhhhhcCCCCcHhH------------
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS--ACAHTGFWNEGLMYFDSMKRDHHIEHKIEH------------ 388 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 388 (541)
.++...|++++|...-....+.. ..+. +...++ ++.-.++.+.+...|++.++- .|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHH
Confidence 35566788888887766666543 2222 223333 344567788888888877652 344322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 389 -YGCLVDLLGRAGRLDQALNIIEEM-PMK-----PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 389 -~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
+..=.+-..+.|.+.+|.+.|.+. .+. |+...|.....+..+.|+.++|+...+++++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111223346788899999988876 444 4556677777778889999999999999999998888888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCC
Q 048358 462 YAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 462 ~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+.-.++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 989999999998888876543
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=5.4e-05 Score=67.75 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLL 458 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 458 (541)
..|...+..+.+.|++++|...|+.+ ...|+. ..+.-+..+|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556678888888888877 334432 455667777888888888888888888777664 5566667
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+.++...|++++|..+++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888888887653
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=7.6e-05 Score=54.22 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=36.0
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVP-PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.. +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554310 1223333345555555555555555555 2111 112222333455555555555555
Q ss_pred HHHH
Q 048358 407 NIIE 410 (541)
Q Consensus 407 ~~~~ 410 (541)
+.|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.81 E-value=0.03 Score=52.36 Aligned_cols=402 Identities=9% Similarity=0.038 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHhh
Q 048358 28 IELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV---FLYNAMIRAYTNNHLYGLAINLYKQML 104 (541)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~ 104 (541)
++..++.+.+.+. +-|...|-+|++-|...|..++-++.++++..|-+ ..|..-+.+=....++.....+|-+.+
T Consensus 26 ~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 26 GDELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3444555555544 45788999999999999999999999999998654 368877887777889999999999888
Q ss_pred hCCCCCCCCCCCcccHHHHHHHHhccCCch------HHHHHHHHHHH-hCCCCch-hhHHHHHHHH---HcCC------C
Q 048358 105 RDPRTGSLILPDKFTLPFVIKSCAGLLCPS------LGKQIHAHVCK-FGLKSHS-ITENALLDLY---GKCD------E 167 (541)
Q Consensus 105 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~~-~~~~~l~~~~---~~~g------~ 167 (541)
.. .-+...|..-+..-.+..+.- ...+.++-.+. .+++|-. ..|+..+..+ -..| +
T Consensus 104 ~k-------~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 104 KK-------SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred hh-------hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 76 345566666665544433211 11233333332 3444433 2333333221 1122 3
Q ss_pred hHHHHHHHhhcCC-C--Ch-------hhHHHHHHH-----HHh--cCCHHHHHHHHhcCC--------------------
Q 048358 168 LIEAHKVFEEMTD-R--DI-------VAWNNLISG-----YAR--LGQMKKARMLFDKMP-------------------- 210 (541)
Q Consensus 168 ~~~A~~~~~~~~~-~--~~-------~~~~~l~~~-----~~~--~~~~~~A~~~~~~~~-------------------- 210 (541)
+|.....+.++.+ | +. ..|..=+.. +.- ..-+-.|...+++..
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 4555556666654 1 11 111100000 000 000111111111110
Q ss_pred ----------------------CCCc------chHHHHH--------------HHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048358 211 ----------------------YTTI------VSWTAMI--------------SGYTHIGSYAEALDVFRQMQMVGIEPD 248 (541)
Q Consensus 211 ----------------------~~~~------~~~~~l~--------------~~~~~~g~~~~A~~~~~~m~~~~~~p~ 248 (541)
..++ ..|+..+ .-+...++-+.|+...+..... .|+
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc
Confidence 0011 1222221 1223456677777776554322 344
Q ss_pred hHHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh---cCCHHHHHHHHHccCCCChhHHHHHHHH
Q 048358 249 EISIVSVLP-ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK---CGCINQASQLFDQMVERDVVSWSTVIGG 324 (541)
Q Consensus 249 ~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 324 (541)
.+..+. .+....+-+.....|+...+.- ..-| ..+..-.. .|+++...+++-.-...-..+|...++.
T Consensus 335 ---L~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~y-s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~ 406 (660)
T COG5107 335 ---LTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKY-SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNY 406 (660)
T ss_pred ---hheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHH-hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHH
Confidence 222222 2333334444434343332110 0000 00000000 1223222222222222345567778888
Q ss_pred HHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (541)
-.+..-.+.|..+|.++.+.| +.++...+++++..++. |++..|..+|+.-...+ +.+..--+-.+..+.+.++-+
T Consensus 407 v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 407 VLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHH
Confidence 888888999999999999988 67788888888887765 78889999999887743 334443456777788899999
Q ss_pred HHHHHHHhC--CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 404 QALNIIEEM--PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 404 ~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 484 naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 484 NARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999999965 23333 5788889988888999999999888888887764
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=97.80 E-value=0.00065 Score=54.66 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
....-+...|++++|..+|.-+ -..| +..-|..|..++...+++++|+..|..+..++++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444566889999999999987 3334 5667788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 048358 469 EDVSRMRKLIRS 480 (541)
Q Consensus 469 ~~A~~~~~~m~~ 480 (541)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.00098 Score=56.17 Aligned_cols=130 Identities=14% Similarity=0.185 Sum_probs=81.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN--DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGC 391 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 391 (541)
....+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+++..... +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 344566677777777888888888887776432221 3466677777777788888888777777632 334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 392 LVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+...+...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 666666666655544322221 122677888888888888776 444444444444
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.73 E-value=0.00013 Score=51.41 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999999999999999999999999987654
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.71 E-value=0.00012 Score=50.01 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
+...+...|++++|.+.|+.. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677788888888888877 4556 456777777778888888888888888888888764
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.025 Score=52.00 Aligned_cols=123 Identities=12% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHHHHHhc-CCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHH-HH
Q 048358 290 LIEMYIKC-GCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP-----PNDI-TF 353 (541)
Q Consensus 290 l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~ 353 (541)
+...|... |++++|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444444 555555555544411 11 123455666777777888888877776654221 1121 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhc-CCCCc--HhHHHHHHHHHHh--cCCHHHHHHHHHhC
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDH-HIEHK--IEHYGCLVDLLGR--AGRLDQALNIIEEM 412 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 412 (541)
...+-++...||+..|...++...... ++..+ ......|+.++-. ...+.+|+.-|+.+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 333345555677777777777765431 22222 2334455555543 23466666666666
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6.1e-05 Score=42.51 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=23.1
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367788888888888888888888887765
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6.7e-05 Score=42.33 Aligned_cols=31 Identities=45% Similarity=0.918 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGI 245 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 245 (541)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677778888888888888888887777653
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.011 Score=54.38 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHhcCC-----CCC----cchHHHHHHHH
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL-GQMKKARMLFDKMP-----YTT----IVSWTAMISGY 224 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~ 224 (541)
|...+..|...|++..|-+.+.+ +...|... |++++|.+.|++.. ... ...+..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 33344455555555555444333 34444444 55565555555442 111 13455677778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-----ChH-HHHHHHHHHHccCChHHHHHHHHHHHHhC--CCcc--HhHHHHHHHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEP-----DEI-SIVSVLPACAQLGSLELGEWIHMYCDKNH--LLRR--TVICNALIEMY 294 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~ 294 (541)
.+.|++++|.++|++........ +.. .|...+-++...||...|...++...... +..+ ..+...|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 88888888888888776543221 111 12223334455667777777776665432 2222 23445555555
Q ss_pred Hhc--CCHHHHHHHHHccCCCChhHHHHH
Q 048358 295 IKC--GCINQASQLFDQMVERDVVSWSTV 321 (541)
Q Consensus 295 ~~~--g~~~~A~~~~~~~~~~~~~~~~~l 321 (541)
-.. ..++.+..-|+.+.+.|..--..|
T Consensus 246 ~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 432 346666666666666655433333
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.012 Score=48.04 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 048358 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP---DAKIW 421 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 421 (541)
.-|+...-..|..+....|++.+|...|++... +-+..|......+..+....+++..|...++++ ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 357777777888888899999999999998886 355677777888888888999999999888887 2222 22334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
..+...+...|.+..|+..|+.+++..|. +......+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45667788899999999999999887776 5667777888889998777765554443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00011 Score=50.82 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=33.7
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGS 423 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 423 (541)
..|++++|+++|+.+.... |.+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4566666666666666532 445555556666666666666666666666 34455444433
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.0016 Score=59.67 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh---hhcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMK---RDHHIE-HKIEHYGCLVDLLGRAGRLDQALNIIEEM-------PM-KPDA 418 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~ 418 (541)
..|..|.+.|.-.|+++.|+...+.-. +.+|-. .....+..+..++.-.|+++.|.+.|+.. +- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356677777777899999987765422 222221 22345778888999999999999888764 21 2345
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhcc----C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVL----E--PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
....+|...|.-..++++|+.++.+-+.+ + .....++..|+.+|...|..++|+.+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777888888888999999988776543 2 234668889999999999999999887765543
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.52 E-value=0.019 Score=51.10 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=37.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc-ccH---HHHHHHHhccCCchHHHHHHHHHHHhCC
Q 048358 82 AMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK-FTL---PFVIKSCAGLLCPSLGKQIHAHVCKFGL 148 (541)
Q Consensus 82 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~-~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 148 (541)
.....+...|++++|.+.|+.+.... |+. ... ..+..++.+.++++.|...++..++..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34445566777777777777777653 322 222 3445566677777777777777777643
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.0025 Score=53.49 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 112444444445555555555555555443
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0014 Score=59.98 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR-AGRLDQALNIIEEM--PMKPDAKIWGSLLSS 427 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 427 (541)
.+|..+++..-+.+..+.|..+|..+.+.. ..+...|...+..-.. .++.+.|.++|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888888999999999999998643 3344555555555344 56677799999998 344577888889999
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDT---GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...++.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 58999999999999999999999888764
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.0057 Score=60.81 Aligned_cols=138 Identities=13% Similarity=0.056 Sum_probs=99.3
Q ss_pred CCCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 048358 344 LKVPPNDITFIGLLSACAH--T---GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA--------GRLDQALNIIE 410 (541)
Q Consensus 344 ~~~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~ 410 (541)
.+.+.|...|...+++... . ++...|..+|++..+.. |.....|..+..++... ++...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3446778888888887443 2 34778999999998742 33345555544444322 12334445554
Q ss_pred hC---C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 048358 411 EM---P-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484 (541)
Q Consensus 411 ~~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (541)
+. + ...+...+..+...+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++....+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 43 1 223557777777777788999999999999999999 5789999999999999999999999998766543
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0011 Score=63.12 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
+-+......+++.+....+++.+..++-+... --..+.+++++.|...|..++++.+++.=...|+ -||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-----F~D 137 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-----FPD 137 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-----CCC
Confidence 33444555555555555555555555554432 1122344666666666666666666666666665 666
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc
Q 048358 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK 164 (541)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 164 (541)
..+++.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666666665555544444444444444433
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.082 Score=49.03 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT 430 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 430 (541)
.+.+..+.-+...|....|.++-.+. . .|+...|-..+.+|+..+++++-.++... +-.+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555666777788887777765544 2 37888899999999999999988876554 2345778889999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888771 1246677889999999998765544
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.48 E-value=0.032 Score=54.51 Aligned_cols=104 Identities=12% Similarity=-0.042 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHH
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFV 123 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~l 123 (541)
+.+..+.+-+--|...|.+++|.++---.. ....|.-+.......=+++-|.+.|.+.+...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~---------------- 615 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRDLR---------------- 615 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhccH----------------
Confidence 334444444555677777777765432211 12235444444444444455555444443221
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhh
Q 048358 124 IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE 177 (541)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (541)
+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 616 ---------~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 ---------YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---------HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 1122334566677776676654 45667778888888887776
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.00026 Score=49.13 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=47.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCC
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYS-NLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 449 (541)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777788888888777776 4445 4566777777777777 68888888888887776
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.47 E-value=0.022 Score=50.77 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC--CCh-hH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE--RDV-VS---WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
.....+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 345555666777777777777643 211 11 233455666777777777777777664311111223333333221
Q ss_pred --cC---------------c---HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 048358 363 --TG---------------F---WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWG 422 (541)
Q Consensus 363 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 422 (541)
.+ + ...|...|+.+.+.+ |+.. -..+|...+..+...--..- .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~-------------ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQ-------------YTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCCh-------------hHHHHHHHHHHHHHHHHHHH-H
Confidence 10 1 123344444444432 2221 12222222222210000000 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.+..-|.+.|.+..|+.-++.+++.-|+. ++++..+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 23344888999999999999999877764 5577788899999999999998877653
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.0027 Score=47.12 Aligned_cols=81 Identities=16% Similarity=0.066 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCccHhH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGI-EPDEISIVSVLPACAQLG--------SLELGEWIHMYCDKNHLLRRTVI 286 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 286 (541)
+-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 999999999999877653 23456788889999999999999
Q ss_pred HHHHHHHHHh
Q 048358 287 CNALIEMYIK 296 (541)
Q Consensus 287 ~~~l~~~~~~ 296 (541)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887664
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0021 Score=61.27 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=98.8
Q ss_pred cCCCCChhhHHHHHHhccChhHHHHHHHHHHHhccCCc-----hhHHHHHHHHHHcCCChHHHHHHHhcCCC----CCcc
Q 048358 8 LSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQS-----NFLVTKMIDVCNSGGDLAYASLLFKQVKE----PNVF 78 (541)
Q Consensus 8 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~ 78 (541)
++.+..+-.+...+..+.+..++..+...+-+....|+ +.+..++|+.|.+.|..+.+..+++.=.. ||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 55666777888888888888888777777776665543 45678999999999999999999987554 9999
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 79 LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 79 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
++|.+++.+.+.|++..|.++...|...+. ..++.|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-----~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEE-----FDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988876 77778888888877766
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0028 Score=48.94 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=42.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 048358 393 VDLLGRAGRLDQALNIIEEM---PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE---DTGNYVLLSNIYAK 464 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 464 (541)
..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34444455555555555544 21111 223344444555555555555555555554444 34444445555555
Q ss_pred cCCHHHHHHHHHH
Q 048358 465 HGRWEDVSRMRKL 477 (541)
Q Consensus 465 ~g~~~~A~~~~~~ 477 (541)
.|+.++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 5666665555433
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.42 E-value=0.00011 Score=42.13 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=30.4
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999996
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0015 Score=58.65 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWG 422 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~ 422 (541)
..|...+....+.|++++|+..|+.+.+.+ |.+ ...+..+..+|...|++++|...|+.+ ...|+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 445555555567799999999999999864 222 356778999999999999999999998 32332 45566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
.+...+...|+.++|...|+++++..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677788999999999999999999998753
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00076 Score=62.00 Aligned_cols=88 Identities=11% Similarity=0.016 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
..++..+..++.+.+++..|++..++.++.+|+|..+++.=+.++...|+++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 345566666677777777788777777777777777777777777777888888877777765
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCC
Q 048358 498 VQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDV 531 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a 531 (541)
++|++.++...|..+..+..++.+.
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666665555443
No 197
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.1 Score=52.83 Aligned_cols=180 Identities=14% Similarity=0.040 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVF---LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPF 122 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ 122 (541)
......-+..+.+...+.-|..+-+.-.-+... ......+-+.+.|++++|..-|-+-+..- .| ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l------e~-----s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL------EP-----SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC------Ch-----HH
Confidence 334556677788888888888888765432222 22333455678999999998887765321 22 23
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh-hHHHHHHHHHhcCCHHH
Q 048358 123 VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIV-AWNNLISGYARLGQMKK 201 (541)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 201 (541)
+++-+........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+........ -....+..+.+.+-.++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence 555566666667777888888888865 4455577999999999999998888887632111 23445566666666666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 202 ARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 202 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
|..+-..... +.. .+--.+-..+++++|++++..+.
T Consensus 482 a~~LA~k~~~-he~---vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-HEW---VLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence 6665554433 222 23333455788999998888763
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.013 Score=52.01 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHH
Q 048358 333 KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG---RLDQALNII 409 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 409 (541)
....-++.-...+ |-|...|..|..+|...|+++.|...|....+- .+++...+..+..++.... ...++..+|
T Consensus 140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3333344444444 678889999999999999999999999999874 3667777777777766443 466788899
Q ss_pred HhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc
Q 048358 410 EEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 410 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 453 (541)
+++ ..+|+ ..+...|...+...|++.+|...++.|++..|++..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 988 66674 555666666799999999999999999999887643
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.092 Score=48.73 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=81.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHccCChHHHHHHHHHHHHhCCCcc-----------HhHHH
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA--CAQLGSLELGEWIHMYCDKNHLLRR-----------TVICN 288 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~ 288 (541)
.++.-.|+.++|...--..++.. ++ ..+...+++ +...++.+.+...|.+.++.+.... ...+.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 34455566666655554444331 11 112222222 2334455555555555554332110 11122
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
.=.+-..+.|++..|.+.|.+.+.. +...|........+.|+..+|+.--+...+.+ +.=...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 2234456778888888888777432 34456566666677788888877777666542 111223333345556
Q ss_pred ccCcHHHHHHHHHHhhhh
Q 048358 362 HTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~ 379 (541)
..++|++|.+-|+...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667788888888777653
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.017 Score=49.87 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=101.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh-----HHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV-----ICNA 289 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 289 (541)
...+.++.++...|.+.-....+.+..+..-+-+......+.+...+.||.+.|...|+...+..-..+.. +...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45667778888888888889999998887656677777788888888999999999999777654333333 3334
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048358 290 LIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFI 354 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (541)
....|.-.+++..|...+.+++.. |+...|.-.-+....|+..+|++.++.|.... |.+.+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 455667778888898888887553 55666666666777789999999999988863 5444433
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.037 Score=45.32 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHH
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCL 392 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 392 (541)
|++..-..|..++...|++.+|...|.+...--.--|......+.++....+++..|...++.+.+.+.-..++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444555677777778888888888777665455566777777777777788888888877776543222233445667
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 393 VDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+.|...|++.+|..-|+-. ...|+...-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77788888888887777766 445555444444445566776666655444433
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0011 Score=57.94 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=55.3
Q ss_pred hhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCC
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGD 505 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (541)
.+.|++..|...|...++..|.+ +.+++-|+.++...|++++|..+|..+...-
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----------------------- 208 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----------------------- 208 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----------------------
Confidence 34556666666666666666553 4456666666666666666666666655421
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
..+|..++.+..|+....++|+.++|-.++.++|+
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 13556666666666666666666666666666654
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.15 Score=47.43 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
+..+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... +-++.-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33344555666667777776666666666777777777777777665554321 112356666677777777766
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+|..+...+. + ..-+..|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~~------~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKIP------D-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhCC------h-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 6666665521 1 23455666666666666554443
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.012 Score=45.56 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=54.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--ccHhHHHHHHHHH
Q 048358 219 AMISGYTHIGSYAEALDVFRQMQMVGIEPDE--ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL--RRTVICNALIEMY 294 (541)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 294 (541)
.+..++-..|+.++|+.+|++....|...+. ..+..+...+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677788888888888888887755442 23444555666677777777777666554211 1122223333455
Q ss_pred HhcCCHHHHHHHHHccC
Q 048358 295 IKCGCINQASQLFDQMV 311 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~ 311 (541)
...|+.++|...+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666554433
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.005 Score=45.78 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhhhhcCCCCcHhHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKV-PPNDITFIGLLSACAHTG--------FWNEGLMYFDSMKRDHHIEHKIEHYG 390 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (541)
..|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++...+.+|+.+... +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345555566888888888888888888 788888888888766542 344566777777764 6788888888
Q ss_pred HHHHHHHh
Q 048358 391 CLVDLLGR 398 (541)
Q Consensus 391 ~l~~~~~~ 398 (541)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87777654
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.29 Score=49.19 Aligned_cols=306 Identities=10% Similarity=0.037 Sum_probs=164.1
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcC---CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRD---IVAWNNLISGYARLG---QMKKARMLFDKMPY--TTIVSWTAMISGYTHIG 228 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g 228 (541)
.+++-+...+.+..|.++-..+..|. ...+.....-+.+.. +-+-+..+-+++.. ....+|..+++.....|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34555666666777777766666554 344555555555442 22233333344443 33456666666666677
Q ss_pred ChHHHHHHHHHHHHCCCC----CChHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----------CCccHhHHHHHHH-
Q 048358 229 SYAEALDVFRQMQMVGIE----PDEISIVSVLPACAQLGSLELGEWIHMYCDKNH-----------LLRRTVICNALIE- 292 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~- 292 (541)
+.+-|..+++.=...+.+ .+-.-+...+.-+...|+.+....++-.+.+.- .+.....|.-++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 777776665442211110 011123344455556666666555554444321 1111112222111
Q ss_pred -------HHHhcCCHHHHHHHH--Hcc-----CCCChhHHHHHHHHHHhcCCh---HH-------HHHHHHHHHh-CCCC
Q 048358 293 -------MYIKCGCINQASQLF--DQM-----VERDVVSWSTVIGGLANHGKA---HK-------AIHLFHEMQR-LKVP 347 (541)
Q Consensus 293 -------~~~~~g~~~~A~~~~--~~~-----~~~~~~~~~~l~~~~~~~~~~---~~-------a~~~~~~m~~-~~~~ 347 (541)
.+.+.++..++..-| +.. .++-..........+.+.... ++ -+.+.+.+.. .|..
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~ 681 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS 681 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011111111111111 110 011111122233333333221 11 1122222221 2334
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSS 427 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 427 (541)
...-+.+--+..+...|+-.+|.++-.+.+ -|+-..|-.-+.++...+++++-.++-+..+ .+.-|.-++.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 445566666777778899999988877665 3788888888999999999998888877764 24556678889
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
|.+.|+.++|..++.+.-.. .-...+|.+.|++.+|.++--+-
T Consensus 754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 99999999999888764331 25678899999999988765543
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.19 E-value=0.0014 Score=45.93 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
..|.+.+++++|.++++.+ ...| +...|......+.+.|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888888888888887 5555 45666667777888888888888888888888877654443
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.17 E-value=0.00073 Score=41.70 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
.++..+..+|...|++++|++.++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999999888764
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.014 Score=50.50 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLK--VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
....+...|++.+|...|+.+...- -+--......++.++.+.|+++.|...++...+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444555666666666666665532 01112334455566666666666666666666554
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.11 E-value=0.23 Score=45.91 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH
Q 048358 227 IGSYAEALDVFRQMQMVGIEPDEIS--IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS 304 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 304 (541)
.|+++.|.+-|+.|.. .|.... ...+.-..-+.|+.+.|..+-...-..-.. -.-.+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 4666666666666653 122111 112222234555555555555544433211 1334556666677777777777
Q ss_pred HHHHcc-----CCCChh--HHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHH
Q 048358 305 QLFDQM-----VERDVV--SWSTVIGGLA---NHGKAHKAIHLFHEMQRLKVPPNDIT-FIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 305 ~~~~~~-----~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~ 373 (541)
++++.- .+++.. .-..|+.+-. -.-+...|...-.+..+ +.|+... -..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 776544 223322 1112222111 12345566665555544 3566543 234466789999999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.+-+. .|.+..+..++ +.+.|+. ++.=+++. ..+| +......+..+....|++..|..--+.+....
T Consensus 287 E~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 999874 57776554333 3355553 33322222 3456 45667777788889999999999988888888
Q ss_pred CCCcchHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCcc
Q 048358 449 PEDTGNYVLLSNIYAKH-GRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 485 (541)
|. ...|..|+++-... |+-.++...+-+....+-.|
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 87 56888888887766 99999999998887765433
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.0027 Score=59.93 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=66.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
+.+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++..++ .|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 445677888888888888888888888875 667764 35788888888888888888888888886422 1221
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhhCCC
Q 048358 458 LSN--IYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 458 l~~--~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+.. .+..-.+.++..++++....-|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 12223344567777777777665
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.07 E-value=0.023 Score=55.48 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH-------------HHHHH
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTA-------------MISGY 224 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------l~~~~ 224 (541)
+..-+.+...+.-|-++|.+|-+ ...+++.....++|.+|..+-+..++--...|-. --.+|
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 33333444455555556655532 1234445555566666666655555321111111 12345
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 048358 225 THIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~ 243 (541)
.+.|+-.+|..+++++-..
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 5667777777777766543
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.03 E-value=0.073 Score=46.43 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLK--VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
-+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+...++..+.++-.|+.. |-..+.++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH
Confidence 3444556788888888888887642 122345566677778888888888888888887766666665 555555544
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.11 Score=48.72 Aligned_cols=161 Identities=16% Similarity=0.037 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVER-------DVVSWSTVIGGLAN---HGKAHKAIHLFHEMQRLKVPPNDITFIGLL 357 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 357 (541)
..++-.|....+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455566677777777777766443 12222233445555 678888888887755555577777777776
Q ss_pred HHHhc---------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH----HHHHHH---HhC-------CC
Q 048358 358 SACAH---------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD----QALNII---EEM-------PM 414 (541)
Q Consensus 358 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~ 414 (541)
..|-. ....++|+..|.+.-.. .|+...--.++..+...|... +..++- ... .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22466777777766542 344332222333333333311 222222 111 12
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
..+-..+..++.++.-.|+.++|.+.++++.+..|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2456677788888999999999999999999988774
No 215
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.99 E-value=0.41 Score=46.95 Aligned_cols=403 Identities=10% Similarity=0.056 Sum_probs=220.1
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVF-LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
+-..++.+|.--....+++.+..+++.+.. |... -|......=.+-|..+.+..+|++-+.. + +-+...|.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-i-----p~SvdlW~ 117 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-I-----PLSVDLWL 117 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-h-----hhHHHHHH
Confidence 334555555544444555566666666553 4443 2444555556677888888888887653 2 54555565
Q ss_pred HHHHHHh-ccCCchHHHHHHHHHHHh-CCC-CchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh---
Q 048358 122 FVIKSCA-GLLCPSLGKQIHAHVCKF-GLK-SHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR--- 195 (541)
Q Consensus 122 ~ll~~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--- 195 (541)
..+..+. ..|+.+.....|+.++.. |.. .+...|...+..--.++++.....+++++.+-....++.....|.+
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 5555443 446777777777777664 322 2344566667666777788888888888776444444444433332
Q ss_pred c------CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHH-------HHH
Q 048358 196 L------GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS--IVSVLP-------ACA 260 (541)
Q Consensus 196 ~------~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~-------~~~ 260 (541)
. ...+++.++-...... ..-...++..+-.+.+ +...+-+.+..+ .+.+-. .+-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~--v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAER---------SKITHSQEPLEELEIG--VKDSTDPSKSLTEEKTILKRIVSIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhh---------hhcccccChhHHHHHH--HhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111110000 0000001111111100 000010000000 000100 111
Q ss_pred ccCChHHHHHHHHHHHHhC-------CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCC
Q 048358 261 QLGSLELGEWIHMYCDKNH-------LLRRTVICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGK 330 (541)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 330 (541)
...........++.-++.- .+++..+|...+..-...|+.+.+.-+|+.+.-| -...|-..+.-....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 1112222222233222211 1134567888888889999999999999988665 23345444444455588
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH---H
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL---N 407 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~ 407 (541)
.+-|..++....+--++-.+.+-..-..-+...|++..|..+++.+.... +.-...-..-+....+.|..+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88888888776665433333332222223456689999999999999853 333333344455667888888887 4
Q ss_pred HHHhC-CCCCCHHH----HHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 408 IIEEM-PMKPDAKI----WGSLLSS-CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 408 ~~~~~-~~~p~~~~----~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
++... ..+-+..+ +.....- +.-.++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 54444 21222222 2222222 556789999999999999999999999999998877766
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.99 E-value=0.031 Score=42.83 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=80.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+. .+|+.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 356666666666666553 344555555544444445555555555554432111 223333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCc
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMK 484 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (541)
.-+-.++ .+.......+..+...|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++++.-++|+.
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 234455566777889999999999999988777778999999999999999999999999999998864
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.011 Score=54.71 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
..+++.+..+|.+.+++.+|++..+.. ..+ +|......=..+|...|+++.|+..|+++++++|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345778889999999999999999887 444 477888888899999999999999999999999999999999999888
Q ss_pred hcCCHHHH-HHHHHHhhhC
Q 048358 464 KHGRWEDV-SRMRKLIRSK 481 (541)
Q Consensus 464 ~~g~~~~A-~~~~~~m~~~ 481 (541)
+...+.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87766655 7888888765
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.0015 Score=46.58 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccC----CC---CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLE----PE---DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+++.+...|...|++++|+..+++++++. ++ -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777778888888888888888887542 22 245778888899999999999998887653
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.95 E-value=0.0046 Score=52.10 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=70.9
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc--------
Q 048358 66 SLLFKQV--KEPNVFLYNAMIRAYTN-----NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL-------- 130 (541)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-------- 130 (541)
...|+.. ...+-.+|..+++.|.+ .|..+=....+..|.+.|+ .-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv-----~kDL~~Y~~LLDvFPKg~fvp~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV-----EKDLEVYKALLDVFPKGKFVPRNFF 108 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC-----cccHHHHHHHHHhCCCCCcccccHH
Confidence 3444444 33566667777766653 4666667777788888887 78888888888876542
Q ss_pred --------CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 131 --------LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 131 --------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2344578999999999999999999999999887764
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.94 E-value=0.12 Score=44.90 Aligned_cols=166 Identities=12% Similarity=0.139 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE--R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND--ITFIGLLSAC 360 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~ 360 (541)
.....+...|++.+|...|+.+.. | -..+.-.++.++.+.|+++.|...++++++.- |+. ..+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHH
Confidence 345556667777777777777733 2 12345556677778888888888888877642 222 1122222221
Q ss_pred h-------------ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 361 A-------------HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSS 427 (541)
Q Consensus 361 ~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 427 (541)
+ ..+....|...|+.+.+. |=......+|...+..+...--. --..+..-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRLAE-HELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1 112233445555555443 33333344444444333100000 11124455
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDT---GNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 473 (541)
|.+.|.+..|..-++.+++.-|+.+ .++..++.+|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8889999999999999999888854 466778888999998885543
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.096 Score=45.50 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC----CCcHhHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI----EHKIEHYGCL 392 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l 392 (541)
+.+.++..+.-.+++.-....+.+.++..-+-++.....|.+.-.+.|+.+.|..+|+...+..+. ....-.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445667777778888888888888888765556677778888888889999999999877654322 2222222333
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 393 VDLLGRAGRLDQALNIIEEMP-MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
...|.-++++..|...++++. .+| +....+.-.-+..-.|+...|++.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 445666778888888888873 223 44444554445566788888888888888887763
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.0042 Score=57.06 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH----hCCC-ccHhHHHHHHHHHHhcCCHHHHHHHHHccC-------CC--Chh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDK----NHLL-RRTVICNALIEMYIKCGCINQASQLFDQMV-------ER--DVV 316 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 316 (541)
.|..+-+.|.-.|+++.|....+.-.. .|-. .....+..+.+++.-.|+++.|.+.|+... .. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555556666666655443222 1211 112345566666666777777766665431 11 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRL-----KVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+..+|...|.-..++++|+.++.+-... ...-....+..|..+|...|.-++|+.+.+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455666666666667776665543221 11223445666666666666666666554443
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.90 E-value=0.002 Score=51.97 Aligned_cols=91 Identities=7% Similarity=-0.057 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEE
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFV 502 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 502 (541)
....-+...|++++|..+|.-+.-.+|-++..+..|+-++...|++++|...|...-..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--------------------- 100 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--------------------- 100 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 33444678999999999999999999999999999999999999999999999876543
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 503 SGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 503 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.++++.+....|.-|..+|+.+.|.+-++.+|
T Consensus 101 -----~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 101 -----LKNDYRPVFFTGQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred -----ccCCCCccchHHHHHHHhCCHHHHHHHHHHHH
Confidence 23444445555555555555555555444443
No 224
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.89 E-value=0.0027 Score=39.12 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
|.++..++..|.+.|++++|.++++++.+ .+|+++.++..|+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~--------------------------~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA--------------------------LDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HCcCCHHHHHHhhh
Confidence 45788999999999999999999999876 46888888888775
No 225
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.84 E-value=0.012 Score=49.63 Aligned_cols=89 Identities=10% Similarity=0.098 Sum_probs=63.1
Q ss_pred CCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc----------------CChHHHH
Q 048358 211 YTTIVSWTAMISGYTH-----IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL----------------GSLELGE 269 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 269 (541)
..+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+. .+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444555555555543 356666667777888888888888888888776542 2345678
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcCC
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCGC 299 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 299 (541)
+++++|...|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888776554
No 226
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.78 Score=45.84 Aligned_cols=106 Identities=8% Similarity=0.094 Sum_probs=50.6
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQ 198 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (541)
.|+.+...++....++.|.+.+..--. ....+.++.+..++++-+.+.+.+++ +....-.+...+.+.|.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGM 867 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhch
Confidence 445555555555555555444432211 11234444444444444444444433 23344455566666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048358 199 MKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQ 239 (541)
Q Consensus 199 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (541)
-++|.+.|-+-..|. .-+..|...++|.+|.++-+.
T Consensus 868 C~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 868 CDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 666666665554432 223445555555555555444
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.65 E-value=0.03 Score=43.76 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 345 KVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 345 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567777778888888888888888888888877777777777777776543
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.64 E-value=0.63 Score=43.99 Aligned_cols=406 Identities=12% Similarity=0.076 Sum_probs=223.8
Q ss_pred HHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHH
Q 048358 65 ASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAH 142 (541)
Q Consensus 65 A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 142 (541)
-+++=+++.+ .|..+|-.|+.-+..+|..++..+++++|..-- +--+..|..-+++-....++.....+|.+
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf------p~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF------PIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC------ccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 3466666665 467799999999999999999999999997532 44456777777777777889999999998
Q ss_pred HHHhCCCCchhhHHHHHHHHHcCCCh------HHHHHHHhhcCC------CChhhHHHHHHHH---H------hcCCHHH
Q 048358 143 VCKFGLKSHSITENALLDLYGKCDEL------IEAHKVFEEMTD------RDIVAWNNLISGY---A------RLGQMKK 201 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~------~~~~~~~~l~~~~---~------~~~~~~~ 201 (541)
.+...+ +...|...+.--.+.+.. ....+.|+-... .+...|+..+.-+ - ++.+++.
T Consensus 102 CL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 102 CLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 887654 455566555544443311 111222222222 2333444433221 2 2334455
Q ss_pred HHHHHhcCCCC---Cc-------chHHHHHHH-----HHh--cCChHHHHHHHHHHHH--CCCCC----ChHHHHHHHHH
Q 048358 202 ARMLFDKMPYT---TI-------VSWTAMISG-----YTH--IGSYAEALDVFRQMQM--VGIEP----DEISIVSVLPA 258 (541)
Q Consensus 202 A~~~~~~~~~~---~~-------~~~~~l~~~-----~~~--~g~~~~A~~~~~~m~~--~~~~p----~~~~~~~ll~~ 258 (541)
..+.+.++... +. ..|..=+.- +.. +--+-.|...+++... .|... +..|++.+-+.
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 56666666532 11 111111111 110 1124455556665543 23221 23333332210
Q ss_pred -HH---------c------cCC-h-HHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHH
Q 048358 259 -CA---------Q------LGS-L-ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWST 320 (541)
Q Consensus 259 -~~---------~------~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 320 (541)
++ + .|+ . ....-++++.... +...+.+|---...+...++-+.|......-..-.+..-.-
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~ 338 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMF 338 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhee
Confidence 00 0 000 0 1111112222211 11223344433444455677777777766553321111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--------------CCC---------------CCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQR--------------LKV---------------PPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~--------------~~~---------------~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
+...|--.++.+.....|+...+ .+. .--...|...+++-.+..-++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 11112222222222222211100 011 1112356667777778888999999
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIW-GSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
+|-++.+..-+.+++..+++++..++ .|+...|.++|+-- ..-||...| ...+.-+...++-+.|..+|+..++.-.
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 99999986447788888999988775 57888999999865 445665544 4455567788999999999997765332
Q ss_pred C--CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 450 E--DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 450 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
. -...|..++..-..-|+...+..+=++|.+
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2 256788888888888998887766666644
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.64 E-value=0.067 Score=42.29 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHh
Q 048358 393 VDLLGRAGRLDQALNIIEEM----PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG---NYVLLSNIYAK 464 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 464 (541)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445677888888888777 2222 3455666778888888888888888888888887655 33333333444
Q ss_pred cC
Q 048358 465 HG 466 (541)
Q Consensus 465 ~g 466 (541)
..
T Consensus 97 ~~ 98 (142)
T PF13512_consen 97 QD 98 (142)
T ss_pred Hh
Confidence 43
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.57 E-value=0.0047 Score=43.95 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-------P-MKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666655554 1 1122 34566666667777777777777776654
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.56 E-value=0.013 Score=47.80 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+...++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556677788899999999999999999999999999999999999999999999988753
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.52 E-value=0.69 Score=42.92 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHH--HHcCCChHHHHHHHhhcCC-CChh--hHHHHHHHHHhcCCHHHHHHH
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDL--YGKCDELIEAHKVFEEMTD-RDIV--AWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~A~~~ 205 (541)
|+-..|.+.-.+..+. +..|....-.|+.+ -.-.|+++.|.+-|+.|.. |... -...|.-...+.|..+.|...
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4555554444333221 23333333333322 2345777777777777765 2211 112222233345666666665
Q ss_pred HhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHH--HHHHHHHHH---ccCChHHHHHHHHHHH
Q 048358 206 FDKMPYT---TIVSWTAMISGYTHIGSYAEALDVFRQMQMVG-IEPDEIS--IVSVLPACA---QLGSLELGEWIHMYCD 276 (541)
Q Consensus 206 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~ 276 (541)
-+..... -...+...+...+..|+|+.|+++++.-.... +.++..- -..++.+-. -..+...|...-.+..
T Consensus 177 Ae~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 177 AERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN 256 (531)
T ss_pred HHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 5554322 23567777788888888888888887665432 3333321 122222211 1122333333333333
Q ss_pred HhCCCccHh-HHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-CHH
Q 048358 277 KNHLLRRTV-ICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPP-NDI 351 (541)
Q Consensus 277 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~ 351 (541)
+. .|+.. .--.-..++.+.|+..++-.+++.+-+ |.+..+ ++-.+.+.|+ .+..-+++.... .++| |..
T Consensus 257 KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 257 KL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 32 23221 112234566667777777777666633 222222 2222333343 222222222110 1223 344
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhC
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR-AGRLDQALNIIEEM 412 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 412 (541)
+...+..+....|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++-+.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 555566666666777666665555543 35666666666655443 36666666666555
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.43 E-value=0.02 Score=54.25 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI----EHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+.+...++.+..+|...|++++|+..|+...+. .|+. .+|..+..+|...|+.++|++.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455678888899999999999999999998864 3442 35888999999999999999998887
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.3 Score=43.56 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=82.9
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHhhcCCHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS---LLSSCRTYSNLE 435 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 435 (541)
.....|++..|..+|+...... +-+...-..++.+|...|+.+.|..++..++.+-....+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556788899999888887743 44455567788899999999999999999865443333333 222333333333
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...+- +-...+|+|...-..++..+...|+.++|.+.+=.+..+
T Consensus 221 ~~~~l~-~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQ-RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333222 223457989999999999999999999999877666554
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=1.2 Score=44.56 Aligned_cols=216 Identities=10% Similarity=0.016 Sum_probs=104.5
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHH----------HHhcc
Q 048358 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIK----------SCAGL 130 (541)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~----------~~~~~ 130 (541)
.+++|.+..+. .|-+..|..+.......-.++.|...|-+.... |.......|-. .-+--
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY--------~Gik~vkrl~~i~s~~~q~aei~~~~ 747 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY--------AGIKLVKRLRTIHSKEQQRAEISAFY 747 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc--------cchhHHHHhhhhhhHHHHhHhHhhhh
Confidence 34555555543 255567777776666666666666666554332 11111111111 11123
Q ss_pred CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHH
Q 048358 131 LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR-----DIVAWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~ 205 (541)
|.+++|.+++-++-+++ ..+..+.+.||+-...++++.-... -..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665544332 1345555666666666665543221 123566666666666666666666
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh
Q 048358 206 FDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV 285 (541)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (541)
|..-.. -...+.++.+...+++-..+.+.+ +.+....-.+...+.+.|.-++|.+.+-.. +. |
T Consensus 819 Y~~~~~-----~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p--- 881 (1189)
T KOG2041|consen 819 YSYCGD-----TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P--- 881 (1189)
T ss_pred HHhccc-----hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c---
Confidence 655431 122444555544444444333332 333344445555556666555554443211 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERD 314 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 314 (541)
...+..|...++|.+|.++-+...-|.
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 123344555566666666655554443
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.32 Score=41.94 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=74.4
Q ss_pred ccCcHHHHHHHHHHhhhhc----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHh
Q 048358 362 HTGFWNEGLMYFDSMKRDH----HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-------MKPDA-KIWGSLLSSCR 429 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~ 429 (541)
...+++.|+++|++..... ....-...+....+.+++..++++|-..+.+-+ -.|+. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 3456677777776654321 111223446667778888888888877665542 12333 44556666677
Q ss_pred hcCCHHHHHHHHHHHhccC----CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 430 TYSNLEIAVIAMEHLLVLE----PEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
...++..|...++...++. +++..+...|+.+| ..|+.+++..+..
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7889999999998866543 66777888888776 4578888776653
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.33 E-value=0.039 Score=43.56 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=63.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEE
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQE 500 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 500 (541)
-.....+.|++++|++.|+.+....|-. ..+-..|+.+|.+.|++++|...+++..+..+
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP----------------- 78 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP----------------- 78 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Confidence 3444568899999999999999877664 45777899999999999999999999887643
Q ss_pred EEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 501 FVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 501 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
.||+..-++.+.|-.+..+..
T Consensus 79 ------~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 79 ------THPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred ------CCCCccHHHHHHHHHHHHHhh
Confidence 466666667777766666654
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.5 Score=44.41 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
--+.-+...|+..+|.++-.+.+ -||-..|-.=+.++...+++++-+++-+... ++.-|.-++.+|.+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhc
Confidence 33444555566666666655443 3555555555666666666665444433322 133355566677777
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 400 GRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 400 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|+.++|.+++.+.+--+ -...+|.+.|++.+|.++.
T Consensus 758 ~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHH
Confidence 77777777776664222 3445566666666665543
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.038 Score=48.56 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHH
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP-DAKIWGSL 424 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 424 (541)
|+.-+.. .+.|++..|.+.|....+.+ |.+ ...+-.|..++...|++++|..+|..+ +..| -+..+..+
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4443333 33455666666666665532 221 122334555555555555555555444 2122 12334444
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.....+.|+.++|...|+++.+..|..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 444445555555555555555555544
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.22 E-value=0.013 Score=44.68 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=59.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCC
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED----TGNYVLLSNIYAKHGR 467 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 467 (541)
-++...|+.+.|++.|... .+-| ....|+.-..++.-.|+.++|++-+++++++..+. ..+|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456677777777777665 3333 56677777777777777777777777777765332 2245556666777777
Q ss_pred HHHHHHHHHHhhhCC
Q 048358 468 WEDVSRMRKLIRSKS 482 (541)
Q Consensus 468 ~~~A~~~~~~m~~~~ 482 (541)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766555
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.059 Score=43.89 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHhH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIEH 388 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 388 (541)
...++..+...|++++|..+++.+.... |.+...+..++.+|...|+...|.++|+.+.+ ..|++|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777766665 55666677777777777777777777665532 3456666553
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.95 E-value=1.1 Score=39.56 Aligned_cols=195 Identities=22% Similarity=0.216 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE-----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS- 358 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 358 (541)
..+......+...+++..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444445555555555555555544321 233344444445555555666666666555543222 111122222
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCC--CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCC
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHI--EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD--AKIWGSLLSSCRTYSN 433 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 433 (541)
.+...|+++.+...+...... .. ......+......+...++.+.+...+... ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666665331 10 112223333333355566666666666665 32333 4555556666666666
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
++.|...+.......|.....+..+...+...|.++++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777766666654445555555555555666666666665543
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.93 Score=40.59 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=109.3
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 048358 302 QASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH 381 (541)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 381 (541)
...++++....+....-..-.......|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+..+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~- 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA- 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-
Confidence 44445555544322222223344567788899999888887764 4455667778888999999999999998876531
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCcchHHHH
Q 048358 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PEDTGNYVLL 458 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l 458 (541)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111111223455555555555555555554456 66666777788889999999998887777654 4566778888
Q ss_pred HHHHHhcCCHHHHHHH
Q 048358 459 SNIYAKHGRWEDVSRM 474 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~ 474 (541)
+..+.--|.-+.+...
T Consensus 279 le~f~~~g~~Dp~~~~ 294 (304)
T COG3118 279 LELFEAFGPADPLVLA 294 (304)
T ss_pred HHHHHhcCCCCHHHHH
Confidence 8888877754444433
No 244
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.74 E-value=0.0029 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcccCCcc
Q 048358 504 GDDTKPFLKDIFWLLELLALHQDRAKDVID 533 (541)
Q Consensus 504 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 533 (541)
.++++|+++.++..||.+|...|+.++|++
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 346899999999999999999999999863
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.70 E-value=0.41 Score=45.01 Aligned_cols=174 Identities=12% Similarity=0.060 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhcCCCC-Cc------chHHHHHHHHHc---CCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 47 FLVTKMIDVCNSGGDLAYASLLFKQVKEP-NV------FLYNAMIRAYTN---NHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~------~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
.+...++-.|-...+++...++++.+... +- ..--...-++.+ .|+.++|++++..+..... .++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-----~~~ 216 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-----NPD 216 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-----CCC
Confidence 33444555677778888888888887752 11 111122334455 7888888888888554444 778
Q ss_pred cccHHHHHHHHhcc---------CCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHH
Q 048358 117 KFTLPFVIKSCAGL---------LCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWN 187 (541)
Q Consensus 117 ~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 187 (541)
+.+|..+.+.|-.. ...+.|...|.+.-+. .|+...--.++..+...|.-.+...-++++. ..++
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~----~~l~ 290 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG----VKLS 290 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH----HHHH
Confidence 88888887765421 1244555555444332 2333322233333333333222111111110 0111
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 188 NLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
...++.|..+. ..+-..+.+++.++.-.|+.++|.+.+++|...
T Consensus 291 ---~llg~kg~~~~---------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 ---SLLGRKGSLEK---------MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ---HHHHhhccccc---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11112221111 234456778888999999999999999999876
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=0.83 Score=45.31 Aligned_cols=160 Identities=12% Similarity=0.050 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHhhhhcCCCCcHhH
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLK-VPPND-----ITFIGLLSACA----HTGFWNEGLMYFDSMKRDHHIEHKIEH 388 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~ 388 (541)
..++....-.|+-+.+++.+.+..+.+ ++-.. -.|..++..++ ...+.+.|.++++.+.+.+ |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344444555666677776666654432 11111 12333333322 2467788999999998854 55544
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH-HHHH
Q 048358 389 YG-CLVDLLGRAGRLDQALNIIEEMP-MK-----PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV-LLSN 460 (541)
Q Consensus 389 ~~-~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~~ 460 (541)
|. .-.+.+...|+.++|++.|++.- .+ .....+.-+...+....++++|...+.++.+.+.-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 34456677899999999999752 11 12344455556678889999999999999986655444444 3445
Q ss_pred HHHhcCCH-------HHHHHHHHHhhhC
Q 048358 461 IYAKHGRW-------EDVSRMRKLIRSK 481 (541)
Q Consensus 461 ~~~~~g~~-------~~A~~~~~~m~~~ 481 (541)
++...|+. ++|.+++++++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 56677888 8888888887654
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.65 E-value=0.16 Score=39.72 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDAKIWGSLLSS 427 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 427 (541)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45566777777777777777777777766665 444456667666664
No 248
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.63 E-value=1.1 Score=38.14 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
+.+||-+.--+...|+++.|.+.|+...+.+ +....+...-.-++.-.|++..|.+-+...-+.....|-...|..++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4567777777778888888888888887765 222222222222333457888887776666554333333333333322
Q ss_pred HHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcC
Q 048358 395 LLGRAGRLDQALNI-IEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-------TGNYVLLSNIYAKHG 466 (541)
Q Consensus 395 ~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 466 (541)
+.-++.+|..- .++.. ..|..-|...+-.+.- |++. ...+++++..-..++ .++|..|+.-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 23345566543 34432 2333333333332211 1111 122333333322222 458889999999999
Q ss_pred CHHHHHHHHHHhhhCCC
Q 048358 467 RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 467 ~~~~A~~~~~~m~~~~~ 483 (541)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876654
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=95.62 E-value=0.28 Score=46.90 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|......+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444444555455555566666666666666666666666666666666666666666666443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.53 E-value=0.2 Score=45.73 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-----
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPDAK----- 419 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~----- 419 (541)
+..++...+.++++++.|+...+--.-.. ...++-.|...|.+..++++|.-+..+. +++.-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44555555666666666665543211111 1234556666666666666655444333 2221111
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
....|.-++...|..-.|.+..+++.++. +-.......++++|...|+.|.|..-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22233344666666666666666655432 12233444566666666666666554443
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.52 E-value=1.6 Score=38.42 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCccHhHHHHHHHHHHhcCCHHHHHH
Q 048358 228 GSYAEALDVFRQMQMVGIE-PDEISIVSVLPACAQLGSLELGEWIHMYCDKN-HLLRRTVICNALIEMYIKCGCINQASQ 305 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 305 (541)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444454444433211 12345555556666666666666666655542 223345556666777777777888888
Q ss_pred HHHccCC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 306 LFDQMVE--RDV-VSWSTVIG-GLANHGKAHKAIHLFHEMQRLKV--PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 306 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
.+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++++.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 8877754 222 22333333 68888999999999998865321 123334444444566788999999999999874
Q ss_pred cCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 380 HHIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 380 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 244 4677888888999999999999998887 44554 455555555555777899999999999988876
No 252
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.47 E-value=3.7 Score=42.48 Aligned_cols=115 Identities=8% Similarity=0.016 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKI--EHYGCLVDLLGRAGRLDQALNIIEEMP-MKPDAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.+.+.|...+........+.+.. ..+..+.......+...+|...++... ...+.....--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34456666666554333332222 122333322333322445555555541 112333333333343456666666665
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
+..+-...........-+++++...|+.++|...|+.+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554333334445555666666666666666666665
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.46 E-value=0.91 Score=43.58 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhc---------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 331 AHKAIHLFHEMQRL-KVPPN-DITFIGLLSACAH---------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 331 ~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
.+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-+...+.. +.|......+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 45666677777621 12333 3344444333321 234555666666666532 45666666677777777
Q ss_pred CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCCHHHHHHHH
Q 048358 400 GRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG--NYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 400 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
|+++.|..+|++. ...||. .+|......+.-.|+.++|.+.++++++++|.... .....++.|... ..++|..++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888887 566753 55555555566788888888888888888887533 333334455555 456666655
Q ss_pred HH
Q 048358 476 KL 477 (541)
Q Consensus 476 ~~ 477 (541)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.40 E-value=0.21 Score=38.33 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=73.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhhc
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP--DAKIWGSLLSSCRTY 431 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~ 431 (541)
-+....|+.+.|++.|.....- .|.....||.-..++.-+|+.++|++-+++. +-+. --..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567889999999999998863 4677888999999999999999999988876 2111 123344444458899
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 048358 432 SNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~ 452 (541)
|+.+.|..-|+.+.+++.+-.
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999886643
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.71 Score=41.89 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=74.4
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCcHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI----TFIGLLSACAHTGFWNEG 369 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a 369 (541)
.|+..+|-..++++.+ .|..+++-.-.+|...|+...-...+++....- .|+.. .-..+..++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 244555555566666666666666666655431 22221 112223334455666666
Q ss_pred HHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 048358 370 LMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPD------AKIWGSLLSSCRTYSNLEIAVIAMEH 443 (541)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (541)
.+.-++..+-+ +.|.-...++...+...|+..++.++..+-...-+ ...|-...-.+...+.++.|+++|++
T Consensus 195 Ek~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666655432 33333445555566666666666666655421111 01111111223344666666666654
Q ss_pred Hh--ccCCCCc
Q 048358 444 LL--VLEPEDT 452 (541)
Q Consensus 444 ~~--~~~~~~~ 452 (541)
-+ +++.+|.
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 33 3444554
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.29 E-value=1.2 Score=35.75 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
...++..+...+.......+++.+...+ +.+....+.++..|++.+ .......+.. . ++.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 4456666666777788888888877776 456667777777777653 3344444442 1 12222344677777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 398 RAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTY-SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
+.+.++++.-++.+++... .. +..+... ++++.|++.+++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~~--~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFK--DA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCHH--HH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777888888887776321 12 2222223 777777777765 335566777666554
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.26 E-value=0.4 Score=47.53 Aligned_cols=145 Identities=22% Similarity=0.264 Sum_probs=102.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh-----HHHHHHHHHHh----cCCHHHH
Q 048358 335 IHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE-----HYGCLVDLLGR----AGRLDQA 405 (541)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~g~~~~A 405 (541)
..+|.-+... +|| .+..++....-.||-+.+++.+....+..++.-... .|...+..+.. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555554 355 345677777888999999999998877544433322 23334433332 4578889
Q ss_pred HHHHHhC-CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 406 LNIIEEM-PMKPDAKIWGSLLS-SCRTYSNLEIAVIAMEHLLVLEPE----DTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 406 ~~~~~~~-~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.++++.+ ..-|+...|...-. .+...|++++|++.++++...... ..-.+.-++.++.-..+|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999998 55688777655443 378899999999999988753311 23466778899999999999999999998
Q ss_pred hCCC
Q 048358 480 SKSM 483 (541)
Q Consensus 480 ~~~~ 483 (541)
+..-
T Consensus 333 ~~s~ 336 (468)
T PF10300_consen 333 KESK 336 (468)
T ss_pred hccc
Confidence 8643
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.19 E-value=0.06 Score=30.64 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666667777777777777777666653
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.14 E-value=1.3 Score=43.33 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHH-HHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 223 GYTHIGSYAEALDVFRQ-MQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
...-.++++++.+..+. -.-..+ | ......++.-+.+.|..+.|.++.. |+ ..-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 34456677776665541 111111 1 3345666666677777777766633 22 12344556777788
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 048358 302 QASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH 381 (541)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 381 (541)
.|.++.++.. +...|..|.......|+++-|.+.|.+... |..|+-.|...|+.+.-.++.+......
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 7777766554 555778888888888888888777766432 4455555666677666666665555421
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 382 IEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
-++....++.-.|+.++..+++.+.+.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 134445555666777777777776653
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.13 E-value=0.045 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666666777777777777777777777665
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.08 E-value=0.096 Score=43.51 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhh
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHK-----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRT 430 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 430 (541)
+-+.+.|++++|..-|...+... ++. ...|..-..++.+.+.++.|++-..+. .+.|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 44667788888888888887642 332 223444455677777888887766665 55553 2344444556777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
...++.|++-|+++++.+|....+-...++.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7888888888888888887765555544443
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=1.7 Score=42.62 Aligned_cols=156 Identities=10% Similarity=0.020 Sum_probs=88.1
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048358 127 CAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLF 206 (541)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (541)
..-.++++.+.+..+.-.-. +..+....+.++..+-+.|..+.|+++...- ..-.....+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHH
Confidence 34456666655544311100 0112344677777788888888887765441 34455667778888888877
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH
Q 048358 207 DKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI 286 (541)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (541)
+... +...|..|.......|+++-|.+.|.+.. | +..++-.|...|+.+...++.......|-
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 6665 55678888888888888888888887753 2 34555566667777766666666655441
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 048358 287 CNALIEMYIKCGCINQASQLFD 308 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~ 308 (541)
++....++.-.|+.++..+++.
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444445566665555544
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.04 E-value=1.5 Score=35.29 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc
Q 048358 81 NAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG 129 (541)
Q Consensus 81 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 129 (541)
..++..+...+.+......++.+...+ +.+...++.++..+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~------~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN------SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC------ccchhHHHHHHHHHHH
Confidence 344444444455555555555554443 2344444555555443
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.80 E-value=1.2 Score=40.91 Aligned_cols=162 Identities=15% Similarity=0.049 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE-R-------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-----PPNDIT 352 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~ 352 (541)
.|..+..++.+.-++.+++.+-..-.. | .-....++..++.-.+.++++++.|+...+.-. ......
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555544433211 1 112344566677777888888888887654211 112246
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhh---hcCCCCcHhHHH-----HHHHHHHhcCCHHHHHHHHHhC-------CCCC-
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKR---DHHIEHKIEHYG-----CLVDLLGRAGRLDQALNIIEEM-------PMKP- 416 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p- 416 (541)
+..|...|....|+++|.-+..+... ..++..-..-|. .|.-++...|+..+|.+..++. +.+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777778888888887766554432 223222222232 3445667778877777777664 3333
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL 447 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (541)
.......+...|...|+.+.|..-|+.+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2345566777799999999999888887653
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.71 E-value=2.8 Score=36.92 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=103.6
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhc
Q 048358 290 LIEMYIKCGCINQASQLFDQMVER------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAH 362 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~ 362 (541)
=+..-.+.|++++|.+.|+.+... ...+--.++.++-+.+++++|+...++....- -.|| ..|...+.+.+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~ 118 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHH
Confidence 344556789999999999988542 23355566778889999999999999987753 2333 334444444432
Q ss_pred -------cCcHH---HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHhh
Q 048358 363 -------TGFWN---EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIW--GSLLSSCRT 430 (541)
Q Consensus 363 -------~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~ 430 (541)
..|.. .|..-|+.+..++ |+.. |. .+|..-+..+ .|.... ..+..-|.+
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-Ya------------~dA~~~i~~~---~d~LA~~Em~IaryY~k 179 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-YA------------PDAKARIVKL---NDALAGHEMAIARYYLK 179 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-ch------------hhHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 12333 3444444555432 3322 11 1111111111 011111 123445888
Q ss_pred cCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 431 YSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.|.+..|..-++++++.-|.. .+.+..+..+|.+.|..++|...-+-+...
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999999999998876554 446667778899999999998776665443
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.4 Score=43.37 Aligned_cols=153 Identities=12% Similarity=-0.014 Sum_probs=114.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHH----HHHHHHHHhcCC
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY----GCLVDLLGRAGR 401 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 401 (541)
.-.|+..+|...++++.+. .|.|...+...-.+|.-.|+...-...++++... ..++...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888988899998886 4777888888888999999999999999988763 34554433 445556678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE----DTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
+++|.+.-++. .+.| |...-......+...|+.+++.+.+.+-...=.. -..-|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 6666 5677777888888999999999988765432111 1223445566777889999999999
Q ss_pred HHhhhC
Q 048358 476 KLIRSK 481 (541)
Q Consensus 476 ~~m~~~ 481 (541)
+.=.-.
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 865433
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.62 E-value=3.5 Score=37.75 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=9.5
Q ss_pred HhhcCCHHHHHHHHHH
Q 048358 428 CRTYSNLEIAVIAMEH 443 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~ 443 (541)
+.+.++++.|.+.|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4556666666666654
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.61 E-value=3.3 Score=40.16 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP-M-KPD--AKIWGSLL 425 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~ 425 (541)
..+-..+..++.+.|+.++|++.++++.+.+...........|+..+...+.+.++..++.+-. + -|. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3344567777888899999999999998764333345567889999999999999999988873 2 133 34455544
Q ss_pred HHHhhcCC---------------HHHHHHHHHHHhccCCC
Q 048358 426 SSCRTYSN---------------LEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 426 ~~~~~~~~---------------~~~a~~~~~~~~~~~~~ 450 (541)
-.+...++ -..|.+.+.++.+.+|.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 33333332 13456777887776654
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=2.4 Score=36.81 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 048358 218 TAMISGYTHIGSYAEALDVFRQ 239 (541)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~ 239 (541)
+.-...|...|.++.|-..+++
T Consensus 95 eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHH
Confidence 3334455555555555444444
No 270
>PRK09687 putative lyase; Provisional
Probab=94.50 E-value=3.8 Score=37.51 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 048358 211 YTTIVSWTAMISGYTHIGSY----AEALDVFRQMQMVGIEPDEISIVSVLPAC 259 (541)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 259 (541)
.+|+..-...+.++...|+. .++...+..+... .|+...-...+.++
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aL 115 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINAT 115 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34444444444555555542 3455555554322 34443333333333
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.45 E-value=0.28 Score=43.24 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHHHhcCC--CCCcchHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccC------
Q 048358 65 ASLLFKQVK--EPNVFLYNAMIRAYTN-----NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLL------ 131 (541)
Q Consensus 65 A~~~~~~~~--~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~------ 131 (541)
.++.|.... +.|-.+|-..+..+.. .+..+-....++.|.+.|+ ..|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV-----erDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV-----ERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHhCcccccccHHH
Confidence 345555555 4677778777777653 4667777788899999998 999999999999875432
Q ss_pred ----------CchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCCh-HHHHHHHhhcC
Q 048358 132 ----------CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDEL-IEAHKVFEEMT 179 (541)
Q Consensus 132 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 179 (541)
.-+-+.+++++|...|+.||..+-..|++++.+.+-. .+..++.--|+
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234788999999999999999999999999988763 33444444443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.35 E-value=5 Score=38.28 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhhhh-cCCCCcHhH
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP---NDITFIGLLSACAHTGFWNEGLMYFDSMKRD-HHIEHKIEH 388 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 388 (541)
....+|..++..+.+.|.++.|...+..+...+..+ .+.....-+......|+..+|+..++..... .....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344567777778888888888888887776643111 2333444455566677778888877777652 110101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 389 YGCLVDLLGRAGRLDQALNI-IEEMPMKPDAKIWGSLLSSCRTY------SNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
...+...... ..+..... ........-...+..+..-+... +..+++...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112233333333333 788899999999999999888888888877
Q ss_pred HHhc
Q 048358 462 YAKH 465 (541)
Q Consensus 462 ~~~~ 465 (541)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.30 E-value=0.1 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999988854
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.06 E-value=2.2 Score=33.13 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
....+..+..+|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.+.-++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455667777888888888888877644 677777788888888888888888888877764
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.80 E-value=6.5 Score=37.64 Aligned_cols=357 Identities=11% Similarity=0.090 Sum_probs=162.9
Q ss_pred HHcCCChHHHHHHHhcCCC------------------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc
Q 048358 56 CNSGGDLAYASLLFKQVKE------------------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK 117 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~ 117 (541)
+-+.+.+..|.+.+....+ +|-..=+..+..+...|++.++..+++++...=. ..++..+.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll-krE~~w~~ 167 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL-KRECEWNS 167 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-hhhhcccH
Confidence 3456788888888765432 1222234566778889999999999988876543 01124678
Q ss_pred ccHHHHHHHHhcc--------CCchHHHHHH-------HHHHHh------CCCCchhhHHHHHHHHHcCC-----ChHHH
Q 048358 118 FTLPFVIKSCAGL--------LCPSLGKQIH-------AHVCKF------GLKSHSITENALLDLYGKCD-----ELIEA 171 (541)
Q Consensus 118 ~~~~~ll~~~~~~--------~~~~~a~~~~-------~~~~~~------g~~~~~~~~~~l~~~~~~~g-----~~~~A 171 (541)
.+|+.++-.+++. ...+-.-..+ .++... .+.|.......++....-.- -+-.+
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 8888755554432 1111111222 222111 12333333333333332211 11222
Q ss_pred HHHHhhcC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHhcCC--------CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 172 HKVFEEMT-DRDI-VAWNNLISGYARLGQMKKARMLFDKMP--------YTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 172 ~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
.+.|+.-- .|+- .....+...+.+ +.+++..+-+.+. +.=+.++..++....+.++...|...+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33332221 1221 122233333333 3344433333322 1223567777777888888888877776665
Q ss_pred HCCCCCChHHHHHHH-------HHHH-ccC---ChHHHHHHHHHHHHhCCCccHhHHHHH---HHHHHhcCC-HHHHHHH
Q 048358 242 MVGIEPDEISIVSVL-------PACA-QLG---SLELGEWIHMYCDKNHLLRRTVICNAL---IEMYIKCGC-INQASQL 306 (541)
Q Consensus 242 ~~~~~p~~~~~~~ll-------~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~-~~~A~~~ 306 (541)
-. .|+...-..++ +..+ ... +...-..++......++... .....| ..-+-+.|. -++|..+
T Consensus 326 ~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 326 IL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred hc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 43 44433211111 1111 001 11112222333322222211 111111 222333343 5666666
Q ss_pred HHccCC---CChhHHHHHH----HHHHh---cCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHH--HhccCcHHHHH
Q 048358 307 FDQMVE---RDVVSWSTVI----GGLAN---HGKAHKAIHLFHEMQRLKVPPNDI----TFIGLLSA--CAHTGFWNEGL 370 (541)
Q Consensus 307 ~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~--~~~~g~~~~a~ 370 (541)
++.+.+ .|..+-|... ..|.+ ......-+.+-+-..+.|++|-.. .-+.|.++ +...|++.++.
T Consensus 403 Lk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 403 LKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 666533 2333222221 12221 122333333434444556555332 22333332 33456666665
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS 423 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 423 (541)
-.-.-+.+ +.|++.+|..+.-.+....++++|..++..++ |+..+++.
T Consensus 483 ~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 483 LYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 54444443 45677777776666667777777777777765 45554443
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.62 E-value=0.29 Score=44.31 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=67.7
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCH
Q 048358 357 LSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 357 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 434 (541)
.+.|.+.|.+++|+..|...... .+.+..++..-..+|.+..++..|..-.+.. .+. .-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 55678888888888888877653 2347777777788888888888777666655 211 1234555555666667888
Q ss_pred HHHHHHHHHHhccCCCCcch
Q 048358 435 EIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~ 454 (541)
.+|.+-++.++++.|.+.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 88888888888888886543
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=2.7 Score=34.39 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=58.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHH--HHHHHhcCCH
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDI-TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCL--VDLLGRAGRL 402 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~ 402 (541)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+|.-..-...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44566677777777776665322111 11122233445566667777777666543222111111111 1233455666
Q ss_pred HHHHHHHHhCC--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 403 DQALNIIEEMP--MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 403 ~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
++...-.+.+. ..| ....-..|.-+-.+.|++.+|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66665555552 112 122333444445566666666666665554
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.39 E-value=1.6 Score=35.51 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=40.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 397 GRAGRLDQALNIIEEM-PMKPDAKIWGSLLS-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+.++.+++..++..+ ..+|.......+-. .+...|++.+|+++++.+.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4556777777777666 34444333222221 24566777777777777666666665555556666655555
No 279
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.39 E-value=0.83 Score=40.40 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=69.4
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC----------------ChHHHHH
Q 048358 212 TTIVSWTAMISGYTH-----IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG----------------SLELGEW 270 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 270 (541)
+|-.+|-..+..+.. .+..+=....++.|.+-|+..|..+|..|++.+-+.. +-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344455554444432 3455556667788888899999999999888765432 2345789
Q ss_pred HHHHHHHhCCCccHhHHHHHHHHHHhcCCH-HHHHHHHHcc
Q 048358 271 IHMYCDKNHLLRRTVICNALIEMYIKCGCI-NQASQLFDQM 310 (541)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 310 (541)
++++|...|+.||..+-..|++++.+.+-. .+..+..-.|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 999999999999999999999999887753 3344444444
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.30 E-value=3.8 Score=33.75 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=56.1
Q ss_pred HHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHhcCCCCCcchHHHH
Q 048358 143 VCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLG--QMKKARMLFDKMPYTTIVSWTAM 220 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~l 220 (541)
+.+.+++|+...+..+++.+.+.|++..-..++..=.-+|.......+-.+.... -..-|.+.+.++. ..+..+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~i 95 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEI 95 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHH
Confidence 3344455555555555555555555554444443332232222222221111110 1223333333332 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+..+...|++-+|+++.+..... +......++.+..+.+|...--.+++...+
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777766654221 111223445555555555444444444433
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.22 E-value=4.1 Score=33.57 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC--ChHHHHHHH
Q 048358 98 NLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD--ELIEAHKVF 175 (541)
Q Consensus 98 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~ 175 (541)
+.++.+.+.++ +|+...+..++..+.+.|.+... .+++..++-+|.......+-.+.... -..-|.+++
T Consensus 15 EYirSl~~~~i-----~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNI-----PVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 44455566777 89999999999999999986544 45566666666554443332222211 133344555
Q ss_pred hhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 176 EEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
.++. ..+..++..+...|++-+|.++.......+......++.+-.+.++..-=..+|+-..+.
T Consensus 86 kRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 86 KRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5543 356677888999999999999998876555556667777777777766555555555443
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.18 E-value=2.8 Score=38.63 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=92.9
Q ss_pred CCCCC-hhhHHHHHHhccC-hh----HHHHHHHHHHHhccCCchhHHHHHHHHHHc--C----CChHHHHHHHhcCCC--
Q 048358 9 SIKEL-EDRFVPILQSCEN-LI----ELKKIHTQILKYLLSQSNFLVTKMIDVCNS--G----GDLAYASLLFKQVKE-- 74 (541)
Q Consensus 9 g~~~~-~~~~~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~-- 74 (541)
+.+.+ ..+++.+|..... ++ .+..+++.+.+.|+..+.++|-+..-.... . .....|..+++.|.+
T Consensus 54 ~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 54 PLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 34443 4455566665554 43 346888999999999888877775444433 2 245678899999886
Q ss_pred -----CCcchHHHHHHHHHcCCCh----hHHHHHHHHhhhCCCCCCCCCCCcccH-HHHHHHHhccCC--chHHHHHHHH
Q 048358 75 -----PNVFLYNAMIRAYTNNHLY----GLAINLYKQMLRDPRTGSLILPDKFTL-PFVIKSCAGLLC--PSLGKQIHAH 142 (541)
Q Consensus 75 -----~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~--~~~a~~~~~~ 142 (541)
++-.++..++.. ..++. +.+..+|+.+...|.. +-|...+ ..++..+..... ...+..+++.
T Consensus 134 ~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~----kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 134 PFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFK----KGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred ccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCC----CCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 445556666544 33443 4567788888887762 3333233 333333332222 3467888889
Q ss_pred HHHhCCCCchhhHHHHHHHHHcC
Q 048358 143 VCKFGLKSHSITENALLDLYGKC 165 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~~~ 165 (541)
+.+.|+++....|..+.-...-.
T Consensus 208 l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred HHHcCCccccccccHHHHHHhcC
Confidence 99999888877776554433333
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.92 E-value=13 Score=38.58 Aligned_cols=127 Identities=10% Similarity=0.001 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCC----CCcchHHHHH-----HHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccH
Q 048358 50 TKMIDVCNSGGDLAYASLLFKQVKE----PNVFLYNAMI-----RAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTL 120 (541)
Q Consensus 50 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll-----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~ 120 (541)
..++..+.+.+... |.+.+++..+ .....|.... ..+...+++..|++.++....... ....|....+
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~--~~~d~~~~v~ 180 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN--QRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh--hcCCHHHHHH
Confidence 34567777766555 8888877553 1122232222 222234799999999988765421 0004555566
Q ss_pred HHHHHHHh--ccCCchHHHHHHHHHHHhCC---------CCchhhHHHHHHHH--HcCCChHHHHHHHhhcC
Q 048358 121 PFVIKSCA--GLLCPSLGKQIHAHVCKFGL---------KSHSITENALLDLY--GKCDELIEAHKVFEEMT 179 (541)
Q Consensus 121 ~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 179 (541)
..++.+.. +.+.++.+.+..+.+..... .|...++..+++.+ ...|+++.+...++.+.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666554 45667777777777754322 23455666666554 46788778877776664
No 284
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.87 E-value=0.28 Score=39.72 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKK 201 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (541)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666677777888888888888766566677788888888888777777777774332 333455666666666666
Q ss_pred HHHHHhcCC
Q 048358 202 ARMLFDKMP 210 (541)
Q Consensus 202 A~~~~~~~~ 210 (541)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666666554
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.79 E-value=11 Score=40.73 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF 365 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 365 (541)
.|.-.++.-.+.|.+.+|..++..=.+.-...|.+....+.....+++|.-.|+..-+ ....+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3445555556677777777766543333344566666666677888888777765432 1234677788889
Q ss_pred HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 366 WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
|.+|..+...+.. +..--..+-..|+..+...++.-+|-++..+..-+|.. .+..+++...+++|.++.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 9988888887754 11112223356778888888888888888877434432 2233445555666666555443
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.75 E-value=4.9 Score=41.56 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=32.2
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL 130 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 130 (541)
+...| .+|-.|.|.|++++|.++.......- ......|...+..+...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~------~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQF------QKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-------TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhhh------cchhHHHHHHHHHHHhC
Confidence 34455 35556789999999999886665543 55667788888888765
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=25 Score=41.33 Aligned_cols=315 Identities=12% Similarity=0.074 Sum_probs=172.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhc----CCCC-hhhHHHHH-HHHHhcCCHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCC
Q 048358 157 ALLDLYGKCDELIEAHKVFEEM----TDRD-IVAWNNLI-SGYARLGQMKKARMLFDK-MPYTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~l~-~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 229 (541)
.+..+-.+++.+.+|...++.- .+.+ ...+..++ ..|+.-++++....+... ...++ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555677888999999999883 2211 12333334 488888888887777663 33332 2334455677899
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHH-HHHHHHhcCCHHHHHHHHH
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNA-LIEMYIKCGCINQASQLFD 308 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 308 (541)
+..|...|+.+.+.+ ++...+++-++......+.++...-..+-..... .+....+++ =..+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 4447788888888888888887776655444432 222233333 2445567777777777665
Q ss_pred ccCCCChhHHHHH-H-HHHHhcC--ChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 309 QMVERDVVSWSTV-I-GGLANHG--KAHKAIHLFHEMQRLKVPP---------NDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 309 ~~~~~~~~~~~~l-~-~~~~~~~--~~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
+.+..+|... + ....+.. +.-.-.+..+.+++.-+.| =...|..++....-. +.+.-.+.+..
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKK 1618 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 5555666554 2 2222222 1111112333332211111 001222222221110 11111111111
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKP-----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.........+...|..-+.--....+..+-+--+++. ...| -..+|......+...|+++.|...+-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 1110000111111221111111111122211112221 1122 357788888889999999999999888877
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 447 LEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 447 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..+ +..+.-.+..+.+.|+...|+.++++..+..
T Consensus 1699 ~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1699 SRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 663 4578888999999999999999999988654
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.73 E-value=0.23 Score=28.14 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
+|..+...+...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666666555
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.73 E-value=0.21 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777888888888888888888554
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.34 E-value=1.5 Score=39.48 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHhHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIEHYGCLV 393 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~ 393 (541)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444455555555555555555555554 44555555555555555555555555555433 234455544444333
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.31 E-value=1.3 Score=35.99 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHH---HHhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 048358 351 ITFIGLLS---ACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL 425 (541)
Q Consensus 351 ~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 425 (541)
.+...|+. .-...++.+.+..++..+.-- .|.. ..-..-...+...|++.+|..+|+++ ...|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34444444 445778999999999999763 3443 22233455678899999999999999 3345555555666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
..|.....-..=...-+++++.+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC
Confidence 65554433333333444444443
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.28 E-value=29 Score=40.91 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=46.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
-..+|....+...+.|+++.|...+-+. ... -+..+.-...-....|+...|+.++++.++..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3567888888888899999998765555 322 33445555666788999999999999988655
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.25 E-value=3 Score=35.09 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPND-----ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
.-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.--.+..+-+ +........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3455666666666666666654 23322 123333344555666666665555554421 112222222334566
Q ss_pred hcCCHHHHHHHHHhC
Q 048358 398 RAGRLDQALNIIEEM 412 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~ 412 (541)
+...+++|++-|..+
T Consensus 180 k~ek~eealeDyKki 194 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKI 194 (271)
T ss_pred hhhhHHHHHHHHHHH
Confidence 666666666666555
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=7.2 Score=33.82 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHhccCCCCcch
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.+.-.+...+++..+.+|.-..+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 44444455555555555555443
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.14 E-value=0.53 Score=42.75 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG 400 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (541)
-.+-|.++|.+++|+++|....... +-|.+++..-..+|.+...+..|..--.....-. ..-+..|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999887764 4499999999999999999988877666665421 112233333333333445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 048358 401 RLDQALNIIEEM-PMKPDA 418 (541)
Q Consensus 401 ~~~~A~~~~~~~-~~~p~~ 418 (541)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 556666555554 566763
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.12 E-value=0.8 Score=41.18 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33344444445555555555555555555555555555555555555555555555443
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.12 E-value=4.3 Score=34.11 Aligned_cols=60 Identities=10% Similarity=0.248 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND--ITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..++......+++..+.....++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544323322 223444455555555555555554443
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.99 E-value=1.2 Score=35.40 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 398 RAGRLDQALNIIEEM-PMKPD---AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
..++.+++..+++.+ ...|+ ..++...+ +...|++.+|.++++++.+-.+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 466777777777766 33343 33333332 4466777777777777666555555455555555555555
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.72 E-value=2.6 Score=40.34 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-P-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
.+...|+++.+...+... + +.....+..+++....+.|+++.|....+.++..+-.+++.....+-.....|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344455555555555544 1 22334455555555555555555555555555555444444444444444555555555
Q ss_pred HHHHHhhhCCC
Q 048358 473 RMRKLIRSKSM 483 (541)
Q Consensus 473 ~~~~~m~~~~~ 483 (541)
..++++...+.
T Consensus 412 ~~wk~~~~~~~ 422 (831)
T PRK15180 412 HYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccCC
Confidence 55555544433
No 300
>PRK09687 putative lyase; Provisional
Probab=91.59 E-value=11 Score=34.57 Aligned_cols=220 Identities=9% Similarity=-0.048 Sum_probs=109.5
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCh----hHHHHHHHHhhhCCCCCCCCCCCcc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLY----GLAINLYKQMLRDPRTGSLILPDKF 118 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~p~~~ 118 (541)
.+|..+....+..+...|..+-...+..-...+|...-...+.++..-|.. .++...+..+... .|+..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-------D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-------DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-------CCCHH
Confidence 566667777777777777654444444433445665555666666766653 4577777766433 45665
Q ss_pred cHHHHHHHHhccCCchH--HHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 048358 119 TLPFVIKSCAGLLCPSL--GKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARL 196 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (541)
.-...+.+++..+.... ..+..+.+...-..++..+-...+.++.+.|+.+....+..-+..++...-..-+.++++.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55566666655432211 1122222222222345556666667777776644333333333345554444444444443
Q ss_pred C-CHHHHHH-HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHH
Q 048358 197 G-QMKKARM-LFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMY 274 (541)
Q Consensus 197 ~-~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 274 (541)
+ ....+.. +...+..++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. .+...+..
T Consensus 187 ~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 187 KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 2 1222332 2333334555555556666666665 34444444444332 1 122344455555553 34444444
Q ss_pred HH
Q 048358 275 CD 276 (541)
Q Consensus 275 ~~ 276 (541)
+.
T Consensus 260 l~ 261 (280)
T PRK09687 260 LL 261 (280)
T ss_pred HH
Confidence 43
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.55 E-value=0.36 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
..|..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999998764
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=21 Score=37.22 Aligned_cols=153 Identities=9% Similarity=0.044 Sum_probs=100.5
Q ss_pred CchhHHHHHHHHH----HcCCChHHHHHHHhcCCC-CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc
Q 048358 44 QSNFLVTKMIDVC----NSGGDLAYASLLFKQVKE-PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF 118 (541)
Q Consensus 44 ~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~ 118 (541)
.+......++..| -+.|++++|...+-+-.. -++ .-++.-|....+...-...++.+.+.|+ .+..
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gl------a~~d 432 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGL------ANSD 432 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHccc------ccch
Confidence 3444444554444 556999999887754332 111 2356667777778888888999999984 6677
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQ 198 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (541)
.-..|+.+|.+.++.+.-.+..+... .|.- ..-....+..+.+.+-.++|..+-.+... ....... .+-..++
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~n 505 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHN 505 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcC
Confidence 77889999999999887766554332 1210 11234567777788888888777666543 2222222 3445688
Q ss_pred HHHHHHHHhcCCCC
Q 048358 199 MKKARMLFDKMPYT 212 (541)
Q Consensus 199 ~~~A~~~~~~~~~~ 212 (541)
+++|.+.+..++.+
T Consensus 506 y~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 506 YEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcCCHH
Confidence 99999999999754
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.61 E-value=0.51 Score=26.72 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999987643
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.25 E-value=0.5 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=18.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHH
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.....++..+...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888887765
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.06 E-value=18 Score=34.45 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=30.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+.+.-+.|+++...+........ .++...+..+... ..++.+.+...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888855555444322 2344444443333 67777777777666554
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.06 E-value=11 Score=34.74 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc--cCC----hHHHHHHHHHHHHhC
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQ--LGS----LELGEWIHMYCDKNH 279 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~ 279 (541)
+++.+.+++.|.+.|++-+..+|.+....... ..+ ...+..+++.|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 45567788888888888888777664433333 222 335666666666654
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.54 E-value=6.2 Score=33.19 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHH
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVERD------VVSWSTVIGGLANHGKAHKAIHLFHEMQRL---KVPPNDITFIG 355 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ 355 (541)
..+..+.+.|++.|+.+.|.+.|.++.+.. ...+-.++......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 357788889999999999999998886542 335667778888889999888887776543 21111111111
Q ss_pred HHH--HHhccCcHHHHHHHHHHhhh
Q 048358 356 LLS--ACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 356 l~~--~~~~~g~~~~a~~~~~~~~~ 378 (541)
... .+...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 12345677777776666554
No 308
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.42 E-value=13 Score=31.94 Aligned_cols=178 Identities=12% Similarity=0.034 Sum_probs=102.6
Q ss_pred cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh-HHHHHH--HHHHhcCChHHHHHHH
Q 048358 262 LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVV-SWSTVI--GGLANHGKAHKAIHLF 338 (541)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~ 338 (541)
.|-+..|.-=|.+..... +.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+= -++-..|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444433 223678999999999999999999999999775543 232222 2334568999998877
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHH-HHhhhhcCCCCcHhHHHHHHHHHH-hcCCHHHHHHHHHhCCC
Q 048358 339 HEMQRLKVPPNDI--TFIGLLSACAHTGFWNEGLMYF-DSMKRDHHIEHKIEHYGCLVDLLG-RAGRLDQALNIIEEMPM 414 (541)
Q Consensus 339 ~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 414 (541)
.+.-+.+ +.|+. .|.-+. ...-++.+|..-+ ++..+ .+..-|...+-.|. -.=..+.+.+-......
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7776654 33332 222222 2344566665444 33332 34444544443332 21122222222222211
Q ss_pred C------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 415 K------PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 415 ~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
. .-..||-.+..-+...|+.++|..+|+-++..+.
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 1245677788888999999999999999887653
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.31 E-value=12 Score=31.52 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=60.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhh
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKI----EHYGCLVDLLGRAGRLDQALNIIEEMPMK-PDAKIWGSLLSSCRT 430 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~ 430 (541)
+...+...|++++|...++..... +.|. ..-..|.......|.+|+|+..++...-+ -.......-...+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 345577788888888888876642 1221 11234556777888888888888877421 122223334455888
Q ss_pred cCCHHHHHHHHHHHhccCCC
Q 048358 431 YSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~ 450 (541)
.|+-++|+..|+++++.++.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888887633
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.20 E-value=0.76 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
..++.++.+.|++++|.+.++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444444555555555544443
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.00 E-value=13 Score=31.38 Aligned_cols=91 Identities=11% Similarity=0.006 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 391 CLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGS-----LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+...+..+|++++|...++..--.|....+.. |.......|.+++|...++...+.+-. +..-..-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHc
Confidence 455678899999999999987633344444443 444578899999999988765442211 22344678899999
Q ss_pred CCHHHHHHHHHHhhhCC
Q 048358 466 GRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 466 g~~~~A~~~~~~m~~~~ 482 (541)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.82 E-value=7.6 Score=28.53 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 048358 192 GYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISI 252 (541)
Q Consensus 192 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (541)
.+...|++++|..+.+.+..||...|-+|.. .+.|-.++...-+.+|...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445566666666666666666666655433 34565666666666666655 5554444
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.74 E-value=25 Score=34.44 Aligned_cols=175 Identities=10% Similarity=0.083 Sum_probs=105.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
|-...-+++..+...-.+.-.+.+..+|.. .+...|..++.+|... ..++-..+|+++.+.. -|...+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 444455566666666666667777766643 4556777778888777 5567777888777764 2333333333333
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCc------HhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhh
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHK------IEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDAKIWGSLLSSCRT 430 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 430 (541)
...++.+.+..+|.++... +.|. ...|..+.... ..+.+..+.+..++ +...-...+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3337777777888777653 2331 12344443322 34556666655555 333344555556666778
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
..++++|++++...++.+..|..+...++.-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 8888888888888887776665555555555444
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.67 E-value=1.1 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+|..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999987653
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.62 E-value=0.95 Score=26.94 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999888765
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.55 E-value=4.5 Score=29.82 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
.-+..+-+..+....+.|++......+.+|.+.+++..|+++|+.++.+.+ +....|..++.-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 345566677777788899999999999999999999999999999987644 333367666643
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.37 E-value=0.71 Score=25.74 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
+..+..++.+.|++++|.+.|++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4456677888999999999999875
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=2.4 Score=38.26 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=80.2
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC-------CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 35 TQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-------PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
..-...|.+.++.+...++.+-....+++++...+-++.. ++...+ .+++. +-.-++++++.++..=++.|
T Consensus 53 ~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 53 DKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYG 130 (418)
T ss_pred hhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhc
Confidence 3334567677777888888888888899999988877764 222222 23333 33446779999999999999
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 048358 108 RTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFG 147 (541)
Q Consensus 108 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 147 (541)
+ -||.++++.++..+.+.++...|.++..+|....
T Consensus 131 i-----F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 131 I-----FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred c-----ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999888887665
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.10 E-value=30 Score=34.59 Aligned_cols=393 Identities=10% Similarity=0.025 Sum_probs=217.1
Q ss_pred HHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc-cHHHHHHHHhccCCchHHHHHHHH
Q 048358 66 SLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF-TLPFVIKSCAGLLCPSLGKQIHAH 142 (541)
Q Consensus 66 ~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 142 (541)
.+.++.... -+...|..++.---.....+.+..++..++.. -|... -|......=.+.|..+.+..+|+.
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-------yPl~~gyW~kfA~~E~klg~~~~s~~Vfer 104 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK-------YPLCYGYWKKFADYEYKLGNAENSVKVFER 104 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh-------CccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444433 34556777775544555556777778877754 44443 344444444678999999999999
Q ss_pred HHHhCCCCchhhHHHHHHHHH-cCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc
Q 048358 143 VCKFGLKSHSITENALLDLYG-KCDELIEAHKVFEEMTD------RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIV 215 (541)
Q Consensus 143 ~~~~g~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 215 (541)
.+.. ++.+...|......+. ..|+.+...+.|+.... .+..-|...|.--..++++.....++++..+....
T Consensus 105 gv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~ 183 (577)
T KOG1258|consen 105 GVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH 183 (577)
T ss_pred HHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh
Confidence 9875 6667777766655444 45777777788877654 35567888888888888899999999888765555
Q ss_pred hHHHHHHHHHh---c------CChHHHHHHHHHHHHC----CCCCChHHHHHHHHHHH-ccCChHHHHHHHHHHHHhCCC
Q 048358 216 SWTAMISGYTH---I------GSYAEALDVFRQMQMV----GIEPDEISIVSVLPACA-QLGSLELGEWIHMYCDKNHLL 281 (541)
Q Consensus 216 ~~~~l~~~~~~---~------g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~ 281 (541)
.|+..-.-|.+ . ...+++.++-...... -.++.......-+.-.. ..+..+.+...+.....
T Consensus 184 ~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---- 259 (577)
T KOG1258|consen 184 QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---- 259 (577)
T ss_pred HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH----
Confidence 55544433322 1 1233333322222210 00011111111111110 01111111111111110
Q ss_pred ccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 048358 282 RRTVICNALIEMYIKCGCINQASQLFDQMVE-------R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND 350 (541)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 350 (541)
.--.+|-...........|+.-.+ | +..+|..-+.--...|+.+.+.-+|++..-.- ..=.
T Consensus 260 -------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~ 331 (577)
T KOG1258|consen 260 -------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYD 331 (577)
T ss_pred -------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhH
Confidence 011122222233334444444322 2 45678888888889999999999998875421 1112
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCH-HHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDA-KIWGSLLSS 427 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~-~~~~~l~~~ 427 (541)
..|-..+.-....|+.+.|..++....+- ..+..+.+...-.......|+++.|..+++.+ .. |+. ..-..-+..
T Consensus 332 efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 332 EFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhH
Confidence 23333344444448888888888777653 23333332222223334568999999999999 34 654 333334455
Q ss_pred HhhcCCHHHHHH---HHHHHhccCCCCcchHH----HHHHH-HHhcCCHHHHHHHHHHhhhC
Q 048358 428 CRTYSNLEIAVI---AMEHLLVLEPEDTGNYV----LLSNI-YAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 428 ~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~----~l~~~-~~~~g~~~~A~~~~~~m~~~ 481 (541)
..+.|+.+.+.. ++....+ +..+..... ..++. +.-.++.+.|..++.++.+.
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 678888888883 3333332 222333333 33332 33467899999999888664
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.08 E-value=14 Score=30.55 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=26.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
..+|.+++...-.+-+...+-+--...-..|.-+-.+.|++..|.+.|..+..+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345555555555554444332222223334444455566666666666655543
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.94 E-value=1.3 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777777664
No 322
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.73 E-value=22 Score=32.57 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 317 SWSTVIGGLANHGKAH---KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.+..|.... .-....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHHHH
Confidence 5566777777766544 4555555554432 2224455555667777888888888888888742 21222334444
Q ss_pred HHH---HhcCCHHHHHHHHHhC---CCCCCHH-HHHHH-HHH---HhhcCC------HHHHHHHHHHHhcc--CCCCcch
Q 048358 394 DLL---GRAGRLDQALNIIEEM---PMKPDAK-IWGSL-LSS---CRTYSN------LEIAVIAMEHLLVL--EPEDTGN 454 (541)
Q Consensus 394 ~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~l-~~~---~~~~~~------~~~a~~~~~~~~~~--~~~~~~~ 454 (541)
..+ .... ...|...++.+ ...|... ....+ +.- ..+.++ ++...++++...+. .|-++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 433 3333 33454444444 2333332 11111 111 122222 44444445533321 1333332
Q ss_pred H---HHH----HHHHHhcCCHHHHHHHHHHh
Q 048358 455 Y---VLL----SNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 455 ~---~~l----~~~~~~~g~~~~A~~~~~~m 478 (541)
- ..+ +....+.++|++|.+.|+-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 222 34567889999999999854
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.65 E-value=3.5 Score=32.91 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=66.7
Q ss_pred HHHHHHHHH---HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 048358 351 ITFIGLLSA---CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLS 426 (541)
Q Consensus 351 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~ 426 (541)
...+.|+.. -...++.+++..+++.+.--..-.+...+ .-...+...|++++|.++|++..-.+ ....-..|..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 344444443 34578999999999998753222223333 33456778999999999999994333 3333333333
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.|.... -+ ..|...+......|...+|..+.+.+.
T Consensus 86 ~CL~al--------------~D----p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 86 LCLNAK--------------GD----AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHhc--------------CC----hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333221 11 236666666667777777888877776
No 324
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=2 Score=37.13 Aligned_cols=84 Identities=6% Similarity=0.009 Sum_probs=41.9
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHhhcCCHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL-SSCRTYSNLEI 436 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~ 436 (541)
|.....+..|+..|.+.... .|+. .-|+.=+..+.+..+++.+..-..+. .+.|+..--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44445566666655555542 3444 33344444555555555555444333 4555543333333 33455556666
Q ss_pred HHHHHHHHhc
Q 048358 437 AVIAMEHLLV 446 (541)
Q Consensus 437 a~~~~~~~~~ 446 (541)
|+..+.++.+
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.54 E-value=3.7 Score=26.29 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
.+..++.++.+.|++++|.+..+.+.+ .+|++..+..+...+-.++.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhc
Confidence 456788899999999999999999876 468888887777766665543
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.47 E-value=1 Score=38.91 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=71.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKPDAK-IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
-|....+++.|+.-|.+. .+.|+.. .|..=+-.+.+.++++.+..-..+++++.|+.......++..+.....+++|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 345556788888877665 7788874 45555666788999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 048358 473 RMRKLIRSK 481 (541)
Q Consensus 473 ~~~~~m~~~ 481 (541)
..+.+..+.
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999987554
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.42 E-value=1.7 Score=27.76 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556788999999999999999999999865443
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=40 Score=35.01 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCCh
Q 048358 152 SITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPY-TTIVSWTAMISGYTHIGSY 230 (541)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 230 (541)
..+...++..+.-.|++++|-...-.|...+..-|.-.+..+...++......++=.-.. -++..|..++..+.. .+.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~ 470 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV 470 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH
Confidence 345677888888899999999999999888888888888777777776654433322222 245678888777776 222
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 231 AEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
.-|.+.... .+++...-..++++ -. .+..+. -+ +......|+..|...++++.|..++-..
T Consensus 471 ----~~F~e~i~~-Wp~~Lys~l~iisa--~~----------~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 471 ----KGFLELIKE-WPGHLYSVLTIISA--TE----------PQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----HHHHHHHHh-CChhhhhhhHHHhh--cc----------hHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 222222221 12222211111111 00 011111 01 1223344888888899999999888887
Q ss_pred CCCCh
Q 048358 311 VERDV 315 (541)
Q Consensus 311 ~~~~~ 315 (541)
.++++
T Consensus 532 k~~~v 536 (846)
T KOG2066|consen 532 QDKDV 536 (846)
T ss_pred cChHH
Confidence 66543
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.16 E-value=8.3 Score=38.36 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK 345 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 345 (541)
.-|..|.++....|++..|.+.|....+ |..|+-.+...|+.+....+-....+.|
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 3455555555555555555555544322 3334444444444444433333333333
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=41 Score=34.91 Aligned_cols=100 Identities=13% Similarity=-0.092 Sum_probs=57.3
Q ss_pred HHHHHcCCChHHHHHHHhcCCC--C---CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 53 IDVCNSGGDLAYASLLFKQVKE--P---NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 53 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
++.+.+.+.+++|+...+.... + -...+...|..+...|++++|-...-.|.. .+..-|......+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---------n~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---------NNAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---------chHHHHHHHHHHh
Confidence 5667777888888888776654 2 223566777888888888888877777753 2334455555555
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc
Q 048358 128 AGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK 164 (541)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 164 (541)
...++......+ +-......+..+|..++..+..
T Consensus 434 ~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 555444322211 1111111344566666665554
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.97 E-value=52 Score=36.05 Aligned_cols=111 Identities=11% Similarity=0.121 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHHHcc
Q 048358 185 AWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS--IVSVLPACAQL 262 (541)
Q Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 262 (541)
.|.+....+.+.+.+++|.-.|+...+ ..--+.+|...|+|.+|+.+..++-. ..|... -..|...+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 344444444555555555555544432 12234555666677776666665531 111111 13344555555
Q ss_pred CChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 048358 263 GSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMV 311 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 311 (541)
++.-+|-++..+.... ....+..|++...|++|.++.....
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5555555554443321 1223444555566666666554443
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.60 E-value=0.91 Score=36.66 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=77.5
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 048358 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLY 162 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 162 (541)
++..+.+.+.+......++.+...+. ..+....+.++..|++.++.+....+++ ..+..-...++..+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~-----~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c 80 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENK-----ENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLC 80 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTST-----C-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhccc-----ccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHH
Confidence 46667777888888888888887664 5567778888888888877777776654 11223335567777
Q ss_pred HcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 048358 163 GKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 229 (541)
.+.|.+++|.-++.++...+... ..+...++++.|.+.+... .++..|..++..+...+.
T Consensus 81 ~~~~l~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HTTTSHHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HhcchHHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 77788877777766653311100 0112223333444333333 346778888887776654
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.58 E-value=3 Score=34.54 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
-+++|+.-|++++.++|+...++.+++++|...+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 35667777888888999999999999999886653
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.49 E-value=11 Score=27.64 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556667777777788899999999999999999999999999998876433 24445665553
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.43 E-value=14 Score=31.50 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=54.7
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCCHHH
Q 048358 397 GRAGRLDQALNIIEEMPMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP----EDTGNYVLLSNIYAKHGRWED 470 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~ 470 (541)
.+.|+ +.|.+.|-.+.-.| +.......+..|....+.++++.++-+++++.+ .|++.+..|+..|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44455 66777777773233 333444444556668899999999999998653 368899999999999999998
Q ss_pred HH
Q 048358 471 VS 472 (541)
Q Consensus 471 A~ 472 (541)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 336
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.24 E-value=35 Score=33.41 Aligned_cols=387 Identities=11% Similarity=0.076 Sum_probs=189.2
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHh-ccCCchHHHHHHHHHHHhCCCCchh
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA-GLLCPSLGKQIHAHVCKFGLKSHSI 153 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~ 153 (541)
.|+..|...+.-+-+.+.+.+.-.+|..|.... +.++..|.....-.. ...+.+.|..++...++..+ .++.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H------p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np-dsp~ 175 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH------PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP-DSPK 175 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC------CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC-CChH
Confidence 588899999988888888999999999999875 455566655444333 33448899999888887642 2333
Q ss_pred hHHHHHHH---HHcCCChHHHHHHHhhcCC-------CChhhHHHHH------H---------HHHhcCCHHH-HHHHHh
Q 048358 154 TENALLDL---YGKCDELIEAHKVFEEMTD-------RDIVAWNNLI------S---------GYARLGQMKK-ARMLFD 207 (541)
Q Consensus 154 ~~~~l~~~---~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~------~---------~~~~~~~~~~-A~~~~~ 207 (541)
.|....+. |+.. ...-.+.+..... .....|+... . .........+ -..+.+
T Consensus 176 Lw~eyfrmEL~~~~K--l~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d 253 (568)
T KOG2396|consen 176 LWKEYFRMELMYAEK--LRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIID 253 (568)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHH
Confidence 33322221 1110 0000000000000 0000111000 0 0000000000 011112
Q ss_pred cCC---CCCcchHHHHHH----HHHh---------------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC--
Q 048358 208 KMP---YTTIVSWTAMIS----GYTH---------------IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG-- 263 (541)
Q Consensus 208 ~~~---~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 263 (541)
.+. ..|+.+|..+.. .+.+ ....+....+|++..+. -|+...+...|..|...-
T Consensus 254 ~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~ 331 (568)
T KOG2396|consen 254 DLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTF 331 (568)
T ss_pred HHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 221 224444443322 1111 11223344566666543 456666666666554322
Q ss_pred ----ChHHHHHHHHHHHHhC-CC-ccHhHHHHHHHHHHhcCCHH-HHHHHHHccCCCChhHHHHHHHHHHhcC-ChHHH-
Q 048358 264 ----SLELGEWIHMYCDKNH-LL-RRTVICNALIEMYIKCGCIN-QASQLFDQMVERDVVSWSTVIGGLANHG-KAHKA- 334 (541)
Q Consensus 264 ----~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a- 334 (541)
.......+++...+.+ .. .....|..+.-.++..+... -|..+..+....+...|..-+....... +++-.
T Consensus 332 ~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f 411 (568)
T KOG2396|consen 332 LRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLF 411 (568)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHH
Confidence 2333344444444332 12 23445666665566555433 3444444555666666665555444221 21111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHH--HHHHHHhhhhcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHH
Q 048358 335 IHLFHEMQRLKVPPNDITFIGLLSACAHTGF-WNEG--LMYFDSMKRDHHIEHKIE-HYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a--~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
.+++......-..+-...++... .|+ +... ..++...... + .|+.. .-+.+++-+.+.|-..+|...+.
T Consensus 412 ~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~ 484 (568)
T KOG2396|consen 412 EELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-I-GADSVTLKSKYLDWAYESGGYKKARKVYK 484 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-c-CCceeehhHHHHHHHHHhcchHHHHHHHH
Confidence 11222222221122222333222 122 1111 1222233221 2 23333 33567777888888899999888
Q ss_pred hCC-CC-CCHHHHHHHHHHH--hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 411 EMP-MK-PDAKIWGSLLSSC--RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 411 ~~~-~~-p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.+. .+ |+...|..++..- ...-+..-+..+|+.+..-...+++.|......-...|..+.+-.++.+..
T Consensus 485 ~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 485 SLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 872 22 4667777777651 222337778888888876555778888877776667787777777665543
No 337
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.12 E-value=50 Score=34.97 Aligned_cols=215 Identities=15% Similarity=0.081 Sum_probs=105.8
Q ss_pred HccCChHHHHHHHHHHHHhCCCccHh-------HHHHH-HHHHHhcCCHHHHHHHHHccCC--------CChhHHHHHHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHLLRRTV-------ICNAL-IEMYIKCGCINQASQLFDQMVE--------RDVVSWSTVIG 323 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~ 323 (541)
....++++|..++.++...-..|+.. .++.+ .......|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34455666666655554432222111 22222 2233456777777776655422 24556677777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHH--HHHhccCc--HHHHHHHHHHhhhhcCCC-----CcHhHHHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDIT---FIGLL--SACAHTGF--WNEGLMYFDSMKRDHHIE-----HKIEHYGC 391 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~--~~~~~~g~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 391 (541)
+..-.|++++|..+..+..+..-.-+... +..+. ..+...|. +......|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788888888887776554321222222 22221 22445563 333333344333321111 11233344
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CCCCCH--HH--HHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--cchHHHHH-
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-----PMKPDA--KI--WGSLLSSCRTYSNLEIAVIAMEHLLVLEPED--TGNYVLLS- 459 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~--~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~- 459 (541)
+..++.+ .+.+..-.... ...|.. .. +..|+......|+.++|...+.++..+...+ ...|.+.+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 33333222221 122322 22 2256667788999999999888887644221 12222222
Q ss_pred --H--HHHhcCCHHHHHHHHHH
Q 048358 460 --N--IYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 460 --~--~~~~~g~~~~A~~~~~~ 477 (541)
. .-...|+.++|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 23356888888777665
No 338
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.81 E-value=7.4 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..+++.++.+|+|......++..+...|++++|.+.+-.+....
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555666778888888888888888888888887777776553
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=13 Score=33.81 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
|+-||..+++.++..+.+.+++..|.++.-.+.
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555444444
No 340
>PRK10941 hypothetical protein; Provisional
Probab=85.31 E-value=5.5 Score=36.03 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+.+-.+|.+.++++.|..+.+.++.+.|+++.-+..-+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4455567899999999999999999999999999999999999999999999988887664
No 341
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.12 E-value=14 Score=29.02 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=41.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHH---HHHHHHhC-C-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQ---ALNIIEEM-P-MKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.++..+--.+..++.+..+.++ -+.+++++ + -.|+ ......|.-++.+.+++++++++++.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4555555666677776655443 44566665 2 2332 23333445557777777777777777777777764
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.06 E-value=7.9 Score=37.30 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=65.7
Q ss_pred hcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 048358 327 NHGKAHKAIHLFHE-MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 327 ~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 405 (541)
..|+.-.|-.-+.. +....-.|+...... ..+...|+++.+.+.+....+. +.....+...+++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 34555555443333 333222343333322 2345667777777777666542 334444556777777777777777
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 406 LNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 406 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
...-..| +-+ -++.............|-++++...++++..++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7777666 211 13333333333345566677777777777776654
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.06 E-value=27 Score=31.05 Aligned_cols=222 Identities=14% Similarity=0.205 Sum_probs=122.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCChHHHHHHHHHHHccCChHHHHHHHHHHHHh----C-CCccHh
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMV---GI--EPDEISIVSVLPACAQLGSLELGEWIHMYCDKN----H-LLRRTV 285 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 285 (541)
+...++..+.+.|++++.+..|.+|+.- .+ .-+..+.++++...+...+.+....+++.-.+. . -..=..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445667777888888888777776532 11 224456677777666666666655555433221 1 000012
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC---------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVER---------------DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPPN 349 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 349 (541)
+-..|...|...+++.+..++++++... -...|..-|+.|....+-.+...+|++.... ..-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345777888888888888888777220 1235677778888887777777777776442 12344
Q ss_pred HHHHHHHHHHH-----hccCcHHHHHHHHHHhhhhc---CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHh--C-C--C
Q 048358 350 DITFIGLLSAC-----AHTGFWNEGLMYFDSMKRDH---HIEHKIE--HYGCLVDLLGRAGRLDQALNIIEE--M-P--M 414 (541)
Q Consensus 350 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~--~-~--~ 414 (541)
+... .+++-| .+.|.+++|..-|-+..+.+ |.+.... -|..|...+.+.|- .=|+. . + -
T Consensus 227 PlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred hHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 4443 344444 35688888765444443322 2222222 24444555554441 11111 1 2 2
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
.|.......++.+|. .+++.+-.+++..-
T Consensus 301 dPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQ-NNDIIEFERILKSN 329 (440)
T ss_pred CHHHHHHHHHHHHHh-cccHHHHHHHHHhh
Confidence 355667788888874 45555555554443
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=26 Score=30.60 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 329 GKAHKAIHLFHEMQRL--KVPPN---DITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.++++|+..|++.-+- |-..+ ...+..+...-...+++.+|+.+|+.+.+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566555554331 11111 12233333334456778888888887765
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.78 E-value=4.1 Score=34.80 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+.-++.+.+.+...+|+...+.- +-+| |..+-..++..++-.|++++|..-++-+-++.|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455666777777777766554 5556 34445556666777777877777777777777664
No 346
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.31 E-value=2.4 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
.+...+...|+++.|...+++.++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333444444444444444444444433
No 347
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.19 E-value=64 Score=34.63 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCC
Q 048358 48 LVTKMIDVCNSGGDLAYASLLFKQVK 73 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 73 (541)
-|..|+..|...|..++|+++|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 34555555555555555555555444
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.60 E-value=17 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG 355 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (541)
+..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 455778899999999999888888888887754 35677777777788888877 666666544
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.48 E-value=62 Score=33.19 Aligned_cols=15 Identities=13% Similarity=-0.303 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHhC
Q 048358 265 LELGEWIHMYCDKNH 279 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~ 279 (541)
...+..+++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 345555565555554
No 350
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.30 E-value=54 Score=32.31 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-cHhHHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH-KIEHYGCLV 393 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 393 (541)
+-..+..++.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+-... ..+. -..+|+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaAL 338 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAAL 338 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHH
Confidence 34456777778899999999999987653 22 3346677889999999999999988887532 2222 234555544
Q ss_pred HH
Q 048358 394 DL 395 (541)
Q Consensus 394 ~~ 395 (541)
-.
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 33
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.83 E-value=5.3 Score=33.13 Aligned_cols=103 Identities=9% Similarity=0.072 Sum_probs=37.9
Q ss_pred CCCCCH-HHHHHHHHHHhhcC-----------CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 413 PMKPDA-KIWGSLLSSCRTYS-----------NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 413 ~~~p~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+.|+. .++..+..++...+ .+++|.+.|+++...+|.|. .|..-+.+. ++|-++..++..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHH
Confidence 456653 56666666653322 36778888888888999975 444433333 357777777776
Q ss_pred CCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 048358 481 KSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQD 526 (541)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 526 (541)
.+...-..-. ...-..-....+....+---|+.+|++....|
T Consensus 136 ~~~~~q~~~~----~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~g 177 (186)
T PF06552_consen 136 QGLGQQAMGG----ASSSSSSAKSSKKKKSSDFKYDVFGWVILAVG 177 (186)
T ss_dssp SSS-------------------------------------------
T ss_pred HHhhhhhccC----CCCCCCCccccccccccchhhhhcchHHHHHH
Confidence 6543221000 00000000111223344445788888776555
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.82 E-value=40 Score=30.55 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
......|...|.+.+|.++.++++.++|-+...+..|...++..|+--.|..-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344568999999999999999999999999999999999999999777777776664
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.75 E-value=3.3 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467889999999999999999988654
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.42 E-value=16 Score=31.07 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=19.5
Q ss_pred cCCchHHHHHHHHHHHh---CCCCchhhHHHHHHHHHcCCChHHH
Q 048358 130 LLCPSLGKQIHAHVCKF---GLKSHSITENALLDLYGKCDELIEA 171 (541)
Q Consensus 130 ~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 171 (541)
..+.+.+.+++-.+++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44445555554444432 1133444555555555555554444
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.05 E-value=11 Score=27.52 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
..-|++......+.+|.+.+++..|+++++-....-..+...|..+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 4567888888888888888888888888877664333233344443
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.90 E-value=13 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
.+-|++.+....+.+|.+.+++..|.++++-....-.+....|..++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45688888888888888888888888888887755444333555544
No 357
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.70 E-value=3.4 Score=22.64 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999998888888888877654
No 358
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.48 E-value=12 Score=32.72 Aligned_cols=61 Identities=7% Similarity=-0.081 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.....++...|++-++++...+.+...|.|..+|+.-+.+.+..=+.++|.+-+.+..+..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344556778899999999999999999999999998888888888888888888877653
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.54 E-value=4.1 Score=21.66 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46888999999999999999999887654
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.43 E-value=68 Score=31.69 Aligned_cols=159 Identities=10% Similarity=0.118 Sum_probs=90.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHH
Q 048358 213 TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIE 292 (541)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (541)
|-...-+++..+...-.+.-+..+..+|+.-| .+...|..++.+|... ..+.-..+++.+.+..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556667777777777777888888887664 4566677777777766 556666667766665543 2333444555
Q ss_pred HHHhcCCHHHHHHHHHccCCC------Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc
Q 048358 293 MYIKCGCINQASQLFDQMVER------DV---VSWSTVIGGLANHGKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAH 362 (541)
Q Consensus 293 ~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~ 362 (541)
.|.+ ++.+.+..+|.++... +. ..|.-+...- ..+.+..+.+..+.... |...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 6666777666665221 11 1344333211 23445555554444432 222333444444455666
Q ss_pred cCcHHHHHHHHHHhhh
Q 048358 363 TGFWNEGLMYFDSMKR 378 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~ 378 (541)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 6666677666666665
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.57 E-value=1.6 Score=39.84 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
++.+.++...|++-+..+++++|+....|-.-..+..-.|+|++|...+....+.+
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 34444444444444444444444444444444444444444444444444444433
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.16 E-value=54 Score=29.82 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCchhhHHHHHHHHHcCCChHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 048358 149 KSHSITENALLDLYGKCDELIEAHKVFEEMTD-----RDIVAWNNLISGYARLGQMKKARMLFDK 208 (541)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (541)
.++..+...++..+++.+++.+-.++++.... .|...|..+|......|+..-..++.+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34444444455555555555555555544332 2444555555555555555555555443
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.64 E-value=5.5 Score=34.67 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=57.0
Q ss_pred hcCCHHHHHHHHHHHhc----cC-CCC--cchHHHHHHHHHhcCCHHHHHHH-------HHHhhhCCCccCCceeEEEEc
Q 048358 430 TYSNLEIAVIAMEHLLV----LE-PED--TGNYVLLSNIYAKHGRWEDVSRM-------RKLIRSKSMKKTPGCSLIEVN 495 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~----~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~-------~~~m~~~~~~~~~~~~~~~~~ 495 (541)
....+++|++.|.-++- .+ ++. ...+..+++.|...|+.+..... |.+..+....|..+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~------- 161 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG------- 161 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC-------
Confidence 34455666665555442 11 222 44677788899988885554444 44443333222111
Q ss_pred CEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 496 NEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 496 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
=+...+..++|.+..++|+.++|...+.++|+
T Consensus 162 -------------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 162 -------------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred -------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 13345788999999999999999999988875
No 364
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.35 E-value=20 Score=28.15 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 436 IAVIAMEHLLVL--EPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 436 ~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.+.++|+.|.+. +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888764 466777888999999999999999999875
No 365
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.96 E-value=24 Score=35.34 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCChHHHHHH
Q 048358 48 LVTKMIDVCNSGGDLAYASLL 68 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~ 68 (541)
..+.++..+.+.|-.++|+.+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc
Confidence 444555555555555555544
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.03 E-value=7.3 Score=27.24 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=34.6
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCHHHHHHH
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTG---NYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 474 (541)
....+.++|+..++++++..++.+. ++..|+.+|+..|++.++++.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999998887655444 455666778888888888765
No 367
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=15 Score=33.71 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-P---MKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
.|.-=.+-|.+..++..|...|.+. . -.| +.+.|+.=..+-...|++..|+.-..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456677888888888888776 1 123 456677777777788999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 048358 462 YAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 462 ~~~~g~~~~A~~~~~~m~~ 480 (541)
+....++++|....++...
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999998888888776543
No 368
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.89 E-value=5.5 Score=38.39 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=43.2
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHY-GCLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~ 435 (541)
.+.+.+.++.|..++.++.+. .|+...| ..=..++.+.+++..|+.=+... ...|.. ..|..=..+|.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 344455556666666555542 3432222 22224555555555555433333 444432 33333334455555555
Q ss_pred HHHHHHHHHhccCCCCc
Q 048358 436 IAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~ 452 (541)
+|+..|+....+.|+++
T Consensus 90 ~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHhhhcCcCcH
Confidence 55555555555555554
No 369
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.45 E-value=38 Score=27.23 Aligned_cols=91 Identities=9% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHhccCCch--hHHHHHHHHHHcCCChHHHHHHHhcCCC---------CCcchHHHHHHHHHcCCC-hhHHHHHHHHh
Q 048358 36 QILKYLLSQSN--FLVTKMIDVCNSGGDLAYASLLFKQVKE---------PNVFLYNAMIRAYTNNHL-YGLAINLYKQM 103 (541)
Q Consensus 36 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m 103 (541)
.+.+.+..++. ...|.++...+..+++.....+++.+.. .+..+|+.++.+..+..- --.+..+|..|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34444555543 3566777777777888888877777642 455667777777765555 34566777777
Q ss_pred hhCCCCCCCCCCCcccHHHHHHHHhccC
Q 048358 104 LRDPRTGSLILPDKFTLPFVIKSCAGLL 131 (541)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 131 (541)
.+.+. ++++.-|..++.++.+..
T Consensus 107 k~~~~-----~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 107 KKNDI-----EFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHcCC-----CCCHHHHHHHHHHHHcCC
Confidence 77665 777777777777766653
No 370
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.15 E-value=48 Score=32.44 Aligned_cols=105 Identities=13% Similarity=-0.012 Sum_probs=70.7
Q ss_pred HHHHHhcCCHHHHHHHHHccC---CC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCH-
Q 048358 291 IEMYIKCGCINQASQLFDQMV---ER---------DVVSWSTVIGGLANHGKAHKAIHLFHEMQR-------LKVPPND- 350 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~- 350 (541)
.+.+.-.|++.+|.+++...- .+ .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 345666788999988886551 11 223467777777777887777777776653 4544432
Q ss_pred ----------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 351 ----------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 351 ----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
.+|+. .-.|...|++-.|.+.|.+....+ ..++..|..|..+|..
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 23333 234667899999999999888754 5677778888888754
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.12 E-value=24 Score=30.46 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH
Q 048358 81 NAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCK 145 (541)
Q Consensus 81 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (541)
+..++.+.+.+...+++...++-.+.. +.|..+-..+++.++-.|++++|..-++..-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC------CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344555666666666666666655553 44555666666666666766666665555544
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.33 E-value=1.2e+02 Score=31.67 Aligned_cols=247 Identities=8% Similarity=-0.099 Sum_probs=123.2
Q ss_pred cCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 227 IGSYAEALDVFRQMQMVG-IEPDEI--SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
..+.+.|...+....... ..+... ....+.......+....+...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445677888887764432 222221 12222222222222344444444332221 2333444445556678888888
Q ss_pred HHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHhhhh
Q 048358 304 SQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFW-NEGLMYFDSMKRD 379 (541)
Q Consensus 304 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 379 (541)
...+..|... ...-.-=+..++...|+.++|..+|+.+.. .. +|..++.+- +.|.. .-.......-...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa~-~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAAQ-RLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHHH-HcCCCCCCCCCCCCchhhh
Confidence 8888887442 122222345565667888888888888643 11 233332221 11211 0000000000000
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC---CCCcchHH
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE---PEDTGNYV 456 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 456 (541)
+.... -..-+..+...|+...|...+..+....+......+.......|..+.++....+....+ -.-|..|.
T Consensus 405 --~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 405 --LTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred --hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00001 122345666789999998888777333555566666666778888888887776543321 11233466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 457 LLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
..+..+.+.-.++.++-.----.+.+..|.
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 666666666666666533222234454443
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.09 E-value=37 Score=25.48 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL 344 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 344 (541)
.++|..+.+.+...+. ....+--.-+..+.+.|+|++|...=.....||...|-+|-. .+.|-.+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555555555554442 112222233455677788888855545556677777766543 4567777777777777666
Q ss_pred CCCCCHHHHH
Q 048358 345 KVPPNDITFI 354 (541)
Q Consensus 345 ~~~p~~~~~~ 354 (541)
| .|....|.
T Consensus 99 g-~~~~q~Fa 107 (116)
T PF09477_consen 99 G-SPELQAFA 107 (116)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 45444443
No 374
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.76 E-value=1.6e+02 Score=32.57 Aligned_cols=92 Identities=10% Similarity=-0.039 Sum_probs=45.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHH-HHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 283 RTVICNALIEMYIKCGCINQAS-QLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
+..+-...+.++...|..+.+. .+...+.+++..+-...+.++...+. +++...+..+.+ .|+...-...+.++.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALT 863 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 4555555666666666544332 23333344555555555555555544 344455444443 345555555555555
Q ss_pred ccCcHHHHHHHHHHhhh
Q 048358 362 HTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~ 378 (541)
+...-..+...+....+
T Consensus 864 ~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 864 RWPGDPAARDALTTALT 880 (897)
T ss_pred ccCCCHHHHHHHHHHHh
Confidence 54323345555555544
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.28 E-value=17 Score=25.99 Aligned_cols=36 Identities=3% Similarity=0.087 Sum_probs=18.1
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHH
Q 048358 164 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMK 200 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (541)
..|+.+.|.++++.++ +....|..++.++-..|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 3455555555555555 44444555555554444433
No 376
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.06 E-value=99 Score=29.99 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQM 240 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m 240 (541)
...+|.-|...|+..+..+.++.+
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 345677777788877777777654
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.91 E-value=50 Score=29.78 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh----
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK---- 296 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 296 (541)
|.+++..|+|.+++...-+--+.--+-.......-|-.|++.+.+..+.++-......--.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677788888888776655443211223334444455567777777777666655543222233346666555543
Q ss_pred -cCCHHHHHHHH
Q 048358 297 -CGCINQASQLF 307 (541)
Q Consensus 297 -~g~~~~A~~~~ 307 (541)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666665
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.66 E-value=10 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRL 344 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~ 344 (541)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.58 E-value=14 Score=25.82 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=24.6
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCc-HhHHHHHHHHHHhcCCHHHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHK-IEHYGCLVDLLGRAGRLDQALNI 408 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 408 (541)
..+..++|+..|....++..-+++ ..+...++.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666554222222 23345555666666666665543
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.58 E-value=15 Score=36.45 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=64.0
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM-KPDAKIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.|+...|...+...........+ ...-.|...+.+.|...+|-.++... .+ ...+.++..+..++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 47777777777666542111112 22345666666777777777766554 22 23456677777778888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
|+++.++.|.++..-+.|...-+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888887766666554433
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.23 E-value=92 Score=29.27 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=86.0
Q ss_pred ChhHHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 048358 314 DVVSWSTVIGGLANHGK------------AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH 381 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 381 (541)
|+.+|-.++..--..-. .+.-+.+|++.++.+ +.+.......+..+.+..+.+...+-|+++...+
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 67788888765433211 345567888888874 5566667778888888888888888999998753
Q ss_pred CCCcHhHHHHHHHHHHh---cCCHHHHHHHHHhC---------CC----C--C--CH---HHHHHHHHHHhhcCCHHHHH
Q 048358 382 IEHKIEHYGCLVDLLGR---AGRLDQALNIIEEM---------PM----K--P--DA---KIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 382 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~---------~~----~--p--~~---~~~~~l~~~~~~~~~~~~a~ 438 (541)
+.+...|...+..... .-.+++...+|.+. +. . + +. ..+..+...+...|..+.|.
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Confidence 4567777777766544 23455555555543 11 0 1 11 12223333357789999999
Q ss_pred HHHHHHhccC
Q 048358 439 IAMEHLLVLE 448 (541)
Q Consensus 439 ~~~~~~~~~~ 448 (541)
.+++-+++.+
T Consensus 175 a~~Qa~lE~n 184 (321)
T PF08424_consen 175 ALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHH
Confidence 9999888876
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.10 E-value=86 Score=30.30 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=23.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhhh
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDI--TFIGLLSACA--HTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 378 (541)
..+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555554 333333 2222222222 23445555555555443
No 383
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.65 E-value=11 Score=32.69 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
....++.+.+.+++.+++++-|.....|..++..-.++|+++.|.+.+++..+.+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 45678888889999999998888888899999988899999999999988887765443
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.80 E-value=83 Score=28.18 Aligned_cols=186 Identities=9% Similarity=0.057 Sum_probs=113.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChH---HHHHHHHHHHccCChHHHHHHHHHHHH---hCCC--ccHhHHHHHHHHHHhc
Q 048358 226 HIGSYAEALDVFRQMQMVGIEPDEI---SIVSVLPACAQLGSLELGEWIHMYCDK---NHLL--RRTVICNALIEMYIKC 297 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~ 297 (541)
+..++++|+.-|++.++..-..... ....++....+.+++++....+.++.. +.+. .+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4457999999999988753333333 444567788899999988888877753 2222 2344667777776666
Q ss_pred CCHHHHHHHHHccCC-----CChh----HHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCH-------HHHHHHH
Q 048358 298 GCINQASQLFDQMVE-----RDVV----SWSTVIGGLANHGKAHKAIHLFHEMQRLKV----PPND-------ITFIGLL 357 (541)
Q Consensus 298 g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~-------~~~~~l~ 357 (541)
.+.+-..++|+.-.+ .|.. |-.-|...|...+++.+..++++++...-- ..|. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666666666554322 1222 334567778888888888888888765321 2222 2455556
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH-----HhcCCHHHHHH-HHHhC
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL-----GRAGRLDQALN-IIEEM 412 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~-~~~~~ 412 (541)
..|....+-..-..+|+....-..-.|.+..... |+-| .+.|++++|-. +|+..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHH
Confidence 6666666666777777766543344455543332 3332 35677777653 44444
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.40 E-value=37 Score=29.62 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhccC--CC----CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 435 EIAVIAMEHLLVLE--PE----DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 435 ~~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..|.+.|+++.+.. |. .......++....+.|++++|.+.|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555555555433 22 23466678888888888888888888887654
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.47 E-value=44 Score=25.96 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 333 KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+..+-+..+..-++.|++......+++|.+.+++..|..+|+.++.+. .+....|-.++ ++..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH---------HHHHHHHHHh
Confidence 444556666777889999999999999999999999999999998753 34444455444 3344556666
Q ss_pred CC
Q 048358 413 PM 414 (541)
Q Consensus 413 ~~ 414 (541)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 387
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.44 E-value=1e+02 Score=28.61 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=10.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHh
Q 048358 355 GLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
....-||+.|+.+.|.+.+.+.
T Consensus 109 ~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555444433
No 388
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.10 E-value=3.3e+02 Score=34.49 Aligned_cols=189 Identities=12% Similarity=0.134 Sum_probs=87.8
Q ss_pred cCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 42 LSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
..++.....++...|..-...|-=.-++++-. ...=+...-.|.+.|.+++|...|+.....-..+. .+-+..-|.
T Consensus 2450 ~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~---~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~-~~~~~~Ey~ 2525 (3550)
T KOG0889|consen 2450 TKGDESCLDSLAELYRSLNEEDMFYGLWRRRA---KFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGA-IPYSESEYK 2525 (3550)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh---ccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhccc-CCCCcHHHH
Confidence 34566666677777776666555555554321 11112233456677778888777776543221100 122333344
Q ss_pred HHHHHHhc----cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-----ChhhHHHHH
Q 048358 122 FVIKSCAG----LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-----DIVAWNNLI 190 (541)
Q Consensus 122 ~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~l~ 190 (541)
....-+.+ ..+|+-- .+.| -....+..++.+..+.-++..-...+..... + ....|..+.
T Consensus 2526 lWed~WI~Ca~eL~QWdvl-------~e~~--k~~~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 2596 (3550)
T KOG0889|consen 2526 LWEDHWIRCASELQQWDVL-------TEFG--KHEGNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFL 2596 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHH--hccCCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHH
Confidence 44333322 2222221 1222 1112223344444455555444444433322 1 122233332
Q ss_pred HHHHhcCC------------HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 191 SGYARLGQ------------MKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 191 ~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
..+-...+ .+.+.+-+++.+..-......++.++..--...+|..++....+.
T Consensus 2597 ~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~ 2661 (3550)
T KOG0889|consen 2597 ALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDG 2661 (3550)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22222111 234445556665555555556667666666677777777665543
No 389
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.09 E-value=28 Score=27.85 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 402 LDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 402 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+.|.++.+-|| ...............|++..|.++.+.++..+|+|..+....+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777774 233334445556789999999999999999999999999999888887664
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.62 E-value=1.3e+02 Score=29.54 Aligned_cols=112 Identities=17% Similarity=0.008 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHh---CC-CCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 048358 134 SLGKQIHAHVCKF---GL-KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKM 209 (541)
Q Consensus 134 ~~a~~~~~~~~~~---g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 209 (541)
+....++...... |+ ..+......++... .|+...+..+++.....+ ..=..+...+++...
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~------------~~It~~~v~~~~~~~ 219 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGV------------DSITLELLEEALQKR 219 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc------------CCCCHHHHHHHHhhh
Confidence 4455555554432 33 44444444444432 678888777776642110 000122222333221
Q ss_pred ---CCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 048358 210 ---PYTTIVSWTAMISGYTH---IGSYAEALDVFRQMQMVGIEPDEISIVSVLPAC 259 (541)
Q Consensus 210 ---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 259 (541)
...+...+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++
T Consensus 220 ~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 220 AARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred hhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 12222344555555555 478999999999999988777755544444443
No 391
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=1.2e+02 Score=28.96 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=123.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHH--HHHHHhCCCCCCHHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHL--FHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
+..++..++..|...++|+.--+... ...-++|+...|... .+-|.-..-.||..|-..++..+
T Consensus 51 ~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tL 116 (439)
T KOG1498|consen 51 NTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETL 116 (439)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Confidence 44455666667777777665443321 222345666666542 22233222356666655555443
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC------CHHH--HHHHHHHHhhcC
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP------DAKI--WGSLLSSCRTYS 432 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~--~~~l~~~~~~~~ 432 (541)
...- +-++|-+.. ....-..|...+..+|+.++|..++.+.++.. .... ..--+..|...+
T Consensus 117 r~Vt----egkIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~ 185 (439)
T KOG1498|consen 117 RTVT----EGKIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRL 185 (439)
T ss_pred HHhh----cCceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 2110 001111111 12223456778888999999999998885321 1111 111134577888
Q ss_pred CHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCC
Q 048358 433 NLEIAVIAMEHLLVLEPED-------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGD 505 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (541)
|+-.|--+-++.....-+. ...|..++....+.+.+=.+-+.++.+-+-|........|+..-..+-.|+.
T Consensus 186 D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~-- 263 (439)
T KOG1498|consen 186 DYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV-- 263 (439)
T ss_pred hHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe--
Confidence 9999988887776543222 3367888888889999999999999988776444322225544333444444
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDV 531 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a 531 (541)
+.|.+..-...+.++- ..++.++.
T Consensus 264 -LAp~dneQsdll~~is-~dKkL~e~ 287 (439)
T KOG1498|consen 264 -LAPHDNEQSDLLARIS-NDKKLSEL 287 (439)
T ss_pred -ecCCCcHHHHHHHHHh-cccccccC
Confidence 5676666666666665 44444443
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.14 E-value=53 Score=32.95 Aligned_cols=134 Identities=13% Similarity=0.013 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHH
Q 048358 347 PPNDITFIGLLSACAHT--GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD--AKIW 421 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~ 421 (541)
.|+..+...++.-.... ..-+-+-.++-.|.+ ...|-..+.|...-...-.|+...|.+.+... ..+|. .+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 46666655554433221 223345555555554 23343333333222233468999999887776 44552 3455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
..|.....+.|-.-.|-.++.+.+.+.-..|-++..++++|.-..+++.|++.++...+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 6677777888888899999999998887778899999999999999999999999887654
No 393
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.71 E-value=53 Score=24.71 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 132 CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
..++|..+.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|.+|.. .+.|.-+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45566666666665542 222222333445566666666644333333455555544332 34444455544444433
No 394
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.15 E-value=1.6e+02 Score=30.20 Aligned_cols=272 Identities=10% Similarity=0.001 Sum_probs=150.0
Q ss_pred HHHHHHHHhcCCCC-CcchHHHHHHH-----HHhcCChHHHHHHHHHHHH-------CCCCCChHHHHHHHHHHHccC--
Q 048358 199 MKKARMLFDKMPYT-TIVSWTAMISG-----YTHIGSYAEALDVFRQMQM-------VGIEPDEISIVSVLPACAQLG-- 263 (541)
Q Consensus 199 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 263 (541)
...|...++..... ++..-..+..+ +....+.+.|+.+|+.+.. .|. ......+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 45666666665433 33333333322 3345678888888888766 442 223444555555432
Q ss_pred ---ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc---CCHHHHHHHHHccCCC-ChhHHHHHHHHHHh----cCChH
Q 048358 264 ---SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC---GCINQASQLFDQMVER-DVVSWSTVIGGLAN----HGKAH 332 (541)
Q Consensus 264 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 332 (541)
+...|..++....+.|.+. . ...+...|... .+...|.++|....+. .+.++-.+..+|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~-a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD-A--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch-H--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 5567888888887777432 2 22233333333 3567888888877543 34444444444332 34678
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH---Hh----cCCHHHH
Q 048358 333 KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL---GR----AGRLDQA 405 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 405 (541)
.|..++++..+.| .|...--...+..+.. +.++.+.-.+..+... +.+-....-..+.... .. ..+...+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8888888888887 4443333333444444 6666665555555442 2221111111111111 11 2245566
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-C--CHHHHHHHHHHh
Q 048358 406 LNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH-G--RWEDVSRMRKLI 478 (541)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m 478 (541)
...+.+...+-+......+...|.. ..+.+.|...+.++.... ......++.++... | .+..|.++++..
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 6666666544555555555555433 346888888888877665 55666677666543 1 267788888777
Q ss_pred hhCC
Q 048358 479 RSKS 482 (541)
Q Consensus 479 ~~~~ 482 (541)
.+.+
T Consensus 536 ~~~~ 539 (552)
T KOG1550|consen 536 SEED 539 (552)
T ss_pred HhcC
Confidence 6543
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.11 E-value=23 Score=26.00 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=36.2
Q ss_pred HhhcCCHHHHHHHHHHHhccCCC----C-----cchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPE----D-----TGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..+.|++..|.+.+.+..+.... . ......++......|++++|...+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678888887776666643311 1 23445577778888999999999888764
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.03 E-value=1.1e+02 Score=28.01 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
.....|..+|.+.+|.++.++. .+.| +...+..++..+...|+--.+...++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555556666666555555 3344 4444555555555555555555444444
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=1.1e+02 Score=27.84 Aligned_cols=199 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCC
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGC 299 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 299 (541)
+.+-..+.+++++|+..+.+.+..|+..|..+. .....+...+...|...|+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----------------------------nEqE~tvlel~~lyv~~g~ 60 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----------------------------NEQEATVLELFKLYVSKGD 60 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----------------------------hHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHHcc--------CCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHhccCc
Q 048358 300 INQASQLFDQM--------VERDVVSWSTVIGGLANHGK-AHKAIHLFHEMQRLKVPPNDITF-----IGLLSACAHTGF 365 (541)
Q Consensus 300 ~~~A~~~~~~~--------~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~-----~~l~~~~~~~g~ 365 (541)
+..-.++.... .........+|+..+....+ ++..+.+.....+...+-..... ..++..+.+.|.
T Consensus 61 ~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~ 140 (421)
T COG5159 61 YCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK 140 (421)
T ss_pred cchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHH--HhhcC
Q 048358 366 WNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPDAKIWGSLLSS--CRTYS 432 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~--~~~~~ 432 (541)
+.+|+.+...+......-.| +..+..=-.+|....+..++..-+... -.+|....-.-++.+ .+...
T Consensus 141 YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 141 YSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Q ss_pred CHHHHHHHHHHHhc
Q 048358 433 NLEIAVIAMEHLLV 446 (541)
Q Consensus 433 ~~~~a~~~~~~~~~ 446 (541)
++..|..+|=++.+
T Consensus 221 dyktA~SYF~Ea~E 234 (421)
T COG5159 221 DYKTASSYFIEALE 234 (421)
T ss_pred cchhHHHHHHHHHh
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.82 E-value=51 Score=24.97 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhhh
Q 048358 77 VFLYNAMIRAYTNNHLYGLAINLYKQMLR 105 (541)
Q Consensus 77 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 105 (541)
..-|..++..|...|..++|++++.+...
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34688899999999999999999999877
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=64.77 E-value=1.4e+02 Score=28.89 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHccCC----CChhHHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHH
Q 048358 297 CGCINQASQLFDQMVE----RDVVSWSTVIGGL-ANHGKAHKAIHLFHEMQRLKVPPND----ITFIGLLSACAHTGFWN 367 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 367 (541)
.|+..++.+.+..+.. +....+-.|+.+- ....+..+|+++|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5777777777777733 2344555555543 3456788888888876543 2322 23333445556778888
Q ss_pred HHHHHHHHhhhhcCCCCcHhHH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHY-GCLVDLLGRAG---RLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEH 443 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (541)
++..+-.....++.-.|-..-| ..+..++.+.+ ..+.-..++..|.-.--...|..+...-.-.|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7766665555544334443322 33333444333 3344445555553222346777777778888888888888888
Q ss_pred HhccC
Q 048358 444 LLVLE 448 (541)
Q Consensus 444 ~~~~~ 448 (541)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88765
No 400
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.72 E-value=1.4e+02 Score=28.72 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=34.1
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCC-CcchHHHHHHHHH-hcCCHHHHHHHHHHhhh
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPE-DTGNYVLLSNIYA-KHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 480 (541)
..+.+.|-+..|.+..+-+.+++|. ||-.....++.|+ ++++++--+++++....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456667777777777777777766 6665555555554 45666666666655433
No 401
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.92 E-value=15 Score=33.46 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH-HHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL-SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
....|+..|...+....+.|.+.+.-.+|.+. ...| |+..|-.-. .-+...++++.+..+|.+.+..+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34667777877777777778788888888776 4455 445553322 22567889999999999999999999988876
Q ss_pred HHH
Q 048358 458 LSN 460 (541)
Q Consensus 458 l~~ 460 (541)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 402
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.74 E-value=1.4e+02 Score=28.21 Aligned_cols=96 Identities=10% Similarity=-0.085 Sum_probs=47.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc----ccHHHHHHHHhccCCchHHHHHHHHHH----HhCCCC
Q 048358 79 LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK----FTLPFVIKSCAGLLCPSLGKQIHAHVC----KFGLKS 150 (541)
Q Consensus 79 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~ 150 (541)
+.+.+-.++.+.+.+...+.+.......- .|.. .....++..|.+.+++..+...++.-+ +.+...
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~------~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~ 177 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKM------QPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL 177 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHh------ccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC
Confidence 45556666666676666555555444332 2222 223345556666666655543333221 111111
Q ss_pred chhhH-HHH---HHHHHcCCChHHHHHHHhhcCC
Q 048358 151 HSITE-NAL---LDLYGKCDELIEAHKVFEEMTD 180 (541)
Q Consensus 151 ~~~~~-~~l---~~~~~~~g~~~~A~~~~~~~~~ 180 (541)
++..+ .-+ .-.|....+++.|+-+|+....
T Consensus 178 ~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 178 DPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred CHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 11111 001 1123455789999999988765
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.49 E-value=56 Score=23.53 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHH
Q 048358 296 KCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKA 334 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 334 (541)
..|+.+.|.+++..++ ..+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4566777777777777 6666777777777666655444
No 404
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.73 E-value=2.6e+02 Score=30.95 Aligned_cols=158 Identities=8% Similarity=-0.060 Sum_probs=66.1
Q ss_pred HccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhhhhcCCCCcH
Q 048358 308 DQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE-GLMYFDSMKRDHHIEHKI 386 (541)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 386 (541)
..+..+|...-...+.++...+..+. +..+.. .++...-...+.++...+..+. +...+..+.+ .++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~ 789 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDP 789 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCH
Confidence 33444555544444555544433221 111111 2344444444445444443322 2333333333 2344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
..-...+.++.+.|....+...+..+-..++...-...+.++...+. +++...+..+++ -++..+-...+.++.+.+
T Consensus 790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--DPHLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--CCCHHHHHHHHHHHhccC
Confidence 44555566666666544433333333223444444444555554443 233344433332 223444445555555542
Q ss_pred CHHHHHHHHHHhh
Q 048358 467 RWEDVSRMRKLIR 479 (541)
Q Consensus 467 ~~~~A~~~~~~m~ 479 (541)
.-..+...+....
T Consensus 867 ~~~~a~~~L~~al 879 (897)
T PRK13800 867 GDPAARDALTTAL 879 (897)
T ss_pred CCHHHHHHHHHHH
Confidence 2333444444333
No 405
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.53 E-value=2.1e+02 Score=29.88 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHcc--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhc---c
Q 048358 290 LIEMYIKCGCINQASQLFDQM--VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDITFIGLLSACAH---T 363 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~---~ 363 (541)
....+.-.|.++.|.+++-+. ...+.+.+...+.-|.-.+-.+... ..+.... -.|...-|..||..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345667789999999998872 2224444433333222111111111 2222111 01112557777777764 4
Q ss_pred CcHHHHHHHHHHhhh
Q 048358 364 GFWNEGLMYFDSMKR 378 (541)
Q Consensus 364 g~~~~a~~~~~~~~~ 378 (541)
.++..|.++|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 788889998887765
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.42 E-value=1.6e+02 Score=28.37 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048358 186 WNNLISGYARLGQMKKARMLFDKMPY------TTIVSWTAMISGYTHIGSYAEALDVFRQMQM 242 (541)
Q Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 242 (541)
+.-+.+.|..+|+++.|.+.|.+... ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34455555666666666666665431 1234555666666667777777666666554
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.89 E-value=49 Score=24.23 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=17.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444667777888877777777643
No 408
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.55 E-value=1.3e+02 Score=27.20 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=78.1
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHh----hhCCCCCCCCCCCcccHHHHHHHHhccCCch
Q 048358 59 GGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQM----LRDPRTGSLILPDKFTLPFVIKSCAGLLCPS 134 (541)
Q Consensus 59 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 134 (541)
.+++++|.+++-.. ...+.+.|+...|.++-..| .+.+. ++|......++..+...+.-+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~-----~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSED-----PVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHS-TT-
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCCCc
Confidence 45666666665432 23455566655544443332 33444 555555555555554443221
Q ss_pred -HHHHHHHHHHH---hC--CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 048358 135 -LGKQIHAHVCK---FG--LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDK 208 (541)
Q Consensus 135 -~a~~~~~~~~~---~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (541)
.-.++.+.+++ .| ..-++.....+...|.+.|++.+|..-|-.-..++...+..++..+...|...++
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~------ 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA------ 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H------
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch------
Confidence 22333333332 22 2235677788888999999999998877665545544443445444444444433
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 209 MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
|... ...+-.|...++...|...+....+.
T Consensus 141 ----dlfi-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFI-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHH-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHH-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1111 12233456677788888777666543
No 409
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.24 E-value=4.6e+02 Score=33.41 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=83.0
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhcc-CCchHHHHHHHHHHHhC----CCCchhhHHHHHHHHHc
Q 048358 90 NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGL-LCPSLGKQIHAHVCKFG----LKSHSITENALLDLYGK 164 (541)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g----~~~~~~~~~~l~~~~~~ 164 (541)
.|....++..|-++...-. |-..--..|+....+. |.+-.+..+++...... ..++.....++...|..
T Consensus 2393 ~~~~pnvln~~v~s~~~~~------~~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~ 2466 (3550)
T KOG0889|consen 2393 QGCRPNVLNALVESLVKIV------PPIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRS 2466 (3550)
T ss_pred hccchhHHHHHHHHHHhhc------cCCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence 3444555555555544332 2111222334433333 22555555555443321 23455555666666666
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-CcchHH----HHHHHHHhcCChHH
Q 048358 165 CDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPY-------T-TIVSWT----AMISGYTHIGSYAE 232 (541)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~~~~~~----~l~~~~~~~g~~~~ 232 (541)
-...|.---+|++- -...-+...-.|.+.|.+++|..+|++... | +..-|. ..|.++....+|+-
T Consensus 2467 L~E~Dm~~Glwrrr---~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2467 LNEEDMFYGLWRRR---AKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDV 2543 (3550)
T ss_pred hhHHHHHHHHHHHh---hccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444432 122333455678889999999999987641 1 111222 23444444555554
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 048358 233 ALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKN 278 (541)
Q Consensus 233 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 278 (541)
-.++-+. .| .+..++.+.-+..++......+....+.
T Consensus 2544 l~e~~k~---~~------~~~llle~aWrlsdw~~~~~~l~~~~~~ 2580 (3550)
T KOG0889|consen 2544 LTEFGKH---EG------NYELLLECAWRLSDWNDQKDALEQKAKS 2580 (3550)
T ss_pred HHHHHhc---cC------CceeeeehhccCCcchhHHHHHHHhhhc
Confidence 4433311 11 1233445555566666665555555544
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.13 E-value=64 Score=29.15 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=46.7
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 048358 84 IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163 (541)
Q Consensus 84 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 163 (541)
|.+++..+++.+++...-..-+..- +--+.....-|-.|.+.+.+..+.++-..-+...-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE-----klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE-----KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc-----cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 5677777888777765554433211 12223334444456677777776666555554321222333555555544
Q ss_pred c-----CCChHHHHHHH
Q 048358 164 K-----CDELIEAHKVF 175 (541)
Q Consensus 164 ~-----~g~~~~A~~~~ 175 (541)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 3 36666666655
No 411
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.73 E-value=2e+02 Score=29.52 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-C------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-D------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
.+..++..+.++|..- ..-| | ....+.|.-+|....+.+.|.++++++.+.+|.++-.-..+..+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 4567788888887653 2112 1 344566666788889999999999999999999888888888889999999
Q ss_pred HHHHHHHHHhhhC
Q 048358 469 EDVSRMRKLIRSK 481 (541)
Q Consensus 469 ~~A~~~~~~m~~~ 481 (541)
++|+..+......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988887654
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.25 E-value=44 Score=28.56 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
...|+..++..++.++...|+.++|.+...++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4457777777777777777777777777777777766
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.93 E-value=39 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=19.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.|+...|..++.++...|+.++|.++..++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466666666666666666666666666665
No 414
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.85 E-value=20 Score=32.57 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=36.8
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 397 GRAGRLDQALNIIEEM-PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
.+.|+.++|..+|+.. ...|+ +.....+.......+++-+|-++|-+++..+|.+.+++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4567777777777665 44453 344444444445556677777777777777777655443
No 415
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=58.83 E-value=46 Score=32.41 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=34.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCC--ccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSM--KKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
-.|.++|+..+=...+..+++..- -+..|+.-+.+..-++.++-.-..++.-+..+...+-+...++..+
T Consensus 248 vgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~FP~d~~~A~~lis~~a~~A~l~gA~ 319 (480)
T TIGR01503 248 VGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESKAFGVISTATTIAALSGAT 319 (480)
T ss_pred eccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCCCCCChhhhhhHHHHHHHHHHHcCCC
Confidence 357888877664444444433321 1122333455566666666643333333344445555555555443
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.61 E-value=78 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQM 242 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 242 (541)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999998876
No 417
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.56 E-value=1.8e+02 Score=30.44 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhCCCc---cHhHHHHHHHHHHhcCCHHHHHHHHHccCC-CChh----------HHHHHHHHHHhcCChH
Q 048358 267 LGEWIHMYCDKNHLLR---RTVICNALIEMYIKCGCINQASQLFDQMVE-RDVV----------SWSTVIGGLANHGKAH 332 (541)
Q Consensus 267 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~ 332 (541)
+-..++.+|.+.--.| ...+...++-.|....+++...++.+.+.. ||.. .|.-.++---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3344555555543233 344556666677777778877777766633 2111 1221222223457788
Q ss_pred HHHHHHHHHHhCC--CCCCHHH-----HHH--HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC-H
Q 048358 333 KAIHLFHEMQRLK--VPPNDIT-----FIG--LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR-L 402 (541)
Q Consensus 333 ~a~~~~~~m~~~~--~~p~~~~-----~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 402 (541)
+|+...-.+.+.. +.||... |.- +-..|...+..+.|.+.|++..+ +.|+..+--.+...+...|+ +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhc
Confidence 8888777666543 4455432 211 11224455667788888887764 45654432223333333332 2
Q ss_pred HHHHHH------HHhC-CCCCCHH---HH---HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 403 DQALNI------IEEM-PMKPDAK---IW---GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 403 ~~A~~~------~~~~-~~~p~~~---~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
+...++ +..+ +.+.... .| ...+.+-.-.+++.+|++.-+.|.++.|+....-..+..
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 211111 1111 2221111 11 122344456789999999999999999886544444433
No 418
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.36 E-value=1.7e+02 Score=27.50 Aligned_cols=97 Identities=8% Similarity=-0.044 Sum_probs=55.9
Q ss_pred CccHhHHHHHHHHHHhcCC------------HHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048358 281 LRRTVICNALIEMYIKCGC------------INQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK 345 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 345 (541)
+-|+.+|-.++..--..-. .+.-+.++++..+. +...+..++..+.+..+.++..+-|+++....
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4467777777654433211 23334455554332 44456666677777777777777788877764
Q ss_pred CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhhh
Q 048358 346 VPPNDITFIGLLSACAH---TGFWNEGLMYFDSMKR 378 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 378 (541)
+-+...|...+..... .-.++....+|.+..+
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3345555555554333 3456777777766654
No 419
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=56.86 E-value=94 Score=24.34 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 437 AVIAMEHLLVL--EPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 437 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
..++|..|.+. +...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56667777654 45567788888888999999999998886
No 420
>PRK10941 hypothetical protein; Provisional
Probab=55.58 E-value=1.6e+02 Score=26.87 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
+.+-.+|.+.++++.|+.+.+.+.... |.++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344445555566666666655555543 333333333344455555555555555555543
No 421
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=55.32 E-value=34 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 048358 165 CDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQ 198 (541)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (541)
..+.+.+.++++.++.++..+|..+..++...|.
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3445555555555555555555555555544443
No 422
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.99 E-value=22 Score=30.92 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=31.1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
...|+.+.|.+++++. ...| ....|-.+.....+.|+++.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555554 3333 34555555555566666666666666666666554
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.95 E-value=31 Score=22.94 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.-.++.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554443
No 424
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.92 E-value=1.1e+02 Score=24.30 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 048358 347 PPNDITFIGLLSACAHTG---FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA 418 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 418 (541)
.++..+-..+..++.++. +..+.+.+++.+.+.............|.-++.+.+++++++++++.+ ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 455666666666666654 466778888888862111222344445667888999999999988877 445543
No 425
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.11 E-value=1.9e+02 Score=26.51 Aligned_cols=77 Identities=9% Similarity=-0.072 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHh----hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-------------
Q 048358 404 QALNIIEEMPMKPDAKIWGSLLSSCR----TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG------------- 466 (541)
Q Consensus 404 ~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 466 (541)
.|...+.++-..-+......+...|. -..+.++|...|.++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45555555521123333333333332 23466777777777776655 44445555 444444
Q ss_pred --CHHHHHHHHHHhhhCCC
Q 048358 467 --RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 467 --~~~~A~~~~~~m~~~~~ 483 (541)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 67777777777766554
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.70 E-value=88 Score=24.41 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 048358 412 MPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVL 457 (541)
Q Consensus 412 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (541)
+.+-|++.....-+.+|.+-+|+..|.++++-....-++....|-.
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3566888888888888888888888888888776544443333443
No 427
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.53 E-value=1.8e+02 Score=25.93 Aligned_cols=88 Identities=14% Similarity=0.017 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHcc----------CCCCh-----------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048358 290 LIEMYIKCGCINQASQLFDQM----------VERDV-----------VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP 348 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~----------~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 348 (541)
-.+-+.+.|++.+|...|++. .+|.. ..+...-+++...|++-++++.-.+..... +-
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~ 262 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PG 262 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cc
Confidence 344456667777777666543 12211 122233344455566666666666666553 45
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|...|..-..+....-+.++|..-|..+.+
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 555665555555555566666666666654
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.58 E-value=95 Score=26.13 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcCCC------CcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 048358 366 WNEGLMYFDSMKRDHHIE------HKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSN 433 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 433 (541)
++.|+.+|+.+.+....+ ...-.-...+-.|.+.|.+++|.+++++.--.|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
No 429
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.37 E-value=16 Score=33.74 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|.++.|++.|......+ ++....|..-..++.+.++...|++-++.. .+.||. .-|-.=..+....|++++|...+
T Consensus 128 G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 44555555555554421 333444444444555555555555544443 333432 12222222334455555555555
Q ss_pred HHHhccC
Q 048358 442 EHLLVLE 448 (541)
Q Consensus 442 ~~~~~~~ 448 (541)
..+.+++
T Consensus 206 ~~a~kld 212 (377)
T KOG1308|consen 206 ALACKLD 212 (377)
T ss_pred HHHHhcc
Confidence 5555544
No 430
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.87 E-value=2.6e+02 Score=27.33 Aligned_cols=202 Identities=12% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHHhccCCchhH--HHHHHHHHHcCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 32 KIHTQILKYLLSQSNFL--VTKMIDVCNSGGDLAYASLLFKQVKEPNVF--LYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 32 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
.+.+.+++.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. .....+...+..|+.+.+..+++.-....
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 95 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD 95 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc
Confidence 45566666776665432 223344556677777776666654433322 11223445566777766544443211100
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh--HHHHHHHHHcCCChHHHHHHHhhcCCC---C
Q 048358 108 RTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT--ENALLDLYGKCDELIEAHKVFEEMTDR---D 182 (541)
Q Consensus 108 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 182 (541)
. ..+..-. +.+...+..|+. ++.+.+++.|..|+... -...+...+..|+.+-+..+++.-... |
T Consensus 96 ~-----~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d 165 (413)
T PHA02875 96 D-----VFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED 165 (413)
T ss_pred c-----cccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Confidence 0 1111111 223333445554 45555666676554321 123445556677777766666554332 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048358 183 IVAWNNLISGYARLGQMKKARMLFDKMPYTTIV---SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD 248 (541)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 248 (541)
..-++ -+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++
T Consensus 166 ~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 166 CCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 22222 223344456666666665554433321 1123333334445543 3344445565555
No 431
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.85 E-value=3.3e+02 Score=28.50 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=75.3
Q ss_pred cHHHHHHHHh-ccCCchHHHHHHHHHHHhCCCCch-----hhHHHHHHHHHcCCChHHHHHHHhhcCCC----ChhhH--
Q 048358 119 TLPFVIKSCA-GLLCPSLGKQIHAHVCKFGLKSHS-----ITENALLDLYGKCDELIEAHKVFEEMTDR----DIVAW-- 186 (541)
Q Consensus 119 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-- 186 (541)
++..+...+. ...+++.|...+++.....-.++. .....++..+.+.+... |...+++..+. ....|
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555544 556777777777766544322221 12234456666665554 66666664431 11112
Q ss_pred --HHH-HHHHHhcCCHHHHHHHHhcCC-----CCCc--chHHHHHHHH--HhcCChHHHHHHHHHHHHCCC---------
Q 048358 187 --NNL-ISGYARLGQMKKARMLFDKMP-----YTTI--VSWTAMISGY--THIGSYAEALDVFRQMQMVGI--------- 245 (541)
Q Consensus 187 --~~l-~~~~~~~~~~~~A~~~~~~~~-----~~~~--~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~--------- 245 (541)
..+ +..+...++...|.+.++.+. ..+. .++-.++.+. .+.+..+++++.++++.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 222 122222356776766666553 1122 2232333332 334556666666666533211
Q ss_pred CCChHHHHHHHHHH--HccCChHHHHHHHHHHH
Q 048358 246 EPDEISIVSVLPAC--AQLGSLELGEWIHMYCD 276 (541)
Q Consensus 246 ~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~ 276 (541)
.|-..+|..++..+ ...|++..+...++.+.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23445555555554 45566656655555443
No 432
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.76 E-value=2.8e+02 Score=27.66 Aligned_cols=104 Identities=8% Similarity=0.126 Sum_probs=68.3
Q ss_pred HHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH---HhcCCHHHHHHHHHhC--
Q 048358 339 HEMQRLKVPPNDITF-IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL---GRAGRLDQALNIIEEM-- 412 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~-- 412 (541)
......+ .|+..|+ +.++.-+...|-+.+|...+..+... .||+...|..++..- ..+| ..-+..+++.+
T Consensus 449 ~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 449 SALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALR 524 (568)
T ss_pred HHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHH
Confidence 3333433 5565555 35666677778888888888888763 466777777777543 2334 66667777776
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 413 PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
..-.|+..|...+.--...|..+.+-.++-++.+
T Consensus 525 ~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 525 EFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 1225677777777766678888888777777665
No 433
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.75 E-value=4.2e+02 Score=29.69 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEMPM-KPDAKIWGSLLS 426 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~ 426 (541)
-|..+++.+...+-.+.+.++-..+.+. ++++ .-+++.+.+.....|.+-+|.+.+-+-+. .........++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3566677777777777777776666653 2332 34566777777788888888776665531 112344555665
Q ss_pred HHhhcCCHH------------HHHH-HHHHHhccCCCCcc-hHHHHHHHHHhcCCHHHHHHH
Q 048358 427 SCRTYSNLE------------IAVI-AMEHLLVLEPEDTG-NYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 427 ~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 474 (541)
.+...|.++ +... +++..-...|.... .|..|--.+...++|.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 555555443 3333 33333333343333 344444445566788777654
No 434
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.70 E-value=44 Score=32.56 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFI-GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRL 402 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 402 (541)
.+...+.++.|..++.+.++. .||-..|. .=..++.+.+++..|+.=+.++.+.. +-....|..-..++.+.+++
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 344456667777777776664 34433332 22356666677777666666655521 22222333333444445556
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 048358 403 DQALNIIEEM-PMKPDAKIWGSLLSSC 428 (541)
Q Consensus 403 ~~A~~~~~~~-~~~p~~~~~~~l~~~~ 428 (541)
.+|+..|+.. .+.|+..-+...+.-|
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6666666655 5566665555555544
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.63 E-value=1.3e+02 Score=23.65 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCc-hhhHHHHHHHHHcCCChHHHHHHHhh
Q 048358 135 LGKQIHAHVCKFGLKSH-SITENALLDLYGKCDELIEAHKVFEE 177 (541)
Q Consensus 135 ~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 177 (541)
.+.++|..|...|+-.. ...|......+...|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888775433 55677778888888888888888764
No 436
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.53 E-value=58 Score=26.39 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=38.5
Q ss_pred hhhhcCCCCChhh--HHHHHHhc-cChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCCh
Q 048358 4 RIGALSIKELEDR--FVPILQSC-ENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDL 62 (541)
Q Consensus 4 ~m~~~g~~~~~~~--~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 62 (541)
.|++.|++++..- ...+|... ..+-++.+|++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4566777766663 33344443 35667788888888877666666666666777777644
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.37 E-value=96 Score=30.07 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMV-----------ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
+...|++.++-.|++..|.++++.+. .-.+.++-.+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999998887762 1245567778888888999999999888753
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.27 E-value=2.2e+02 Score=26.04 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=14.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEE 411 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 411 (541)
....+..+...|++.++.+.+.+++.+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344455555666666666555555443
No 439
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.65 E-value=1.1e+02 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.|...-..+...+...|+++.|++.+-.+.+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555555555666666555555544
No 440
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.47 E-value=3e+02 Score=27.36 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=95.2
Q ss_pred HHHHHcCC--ChhHHHHHHHHhhhCCCCCCCCCCCc---ccHHHHHHHH-hccCCchHHHHHHHHHHHh-CCCCc-----
Q 048358 84 IRAYTNNH--LYGLAINLYKQMLRDPRTGSLILPDK---FTLPFVIKSC-AGLLCPSLGKQIHAHVCKF-GLKSH----- 151 (541)
Q Consensus 84 l~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~p~~---~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~-g~~~~----- 151 (541)
...+-..| +...++..++...... +|+. .|...+...+ .-..+++.|..-++..... ..-|+
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~------is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQ------ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccC------ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 34455566 6677777777776654 2222 2222233222 2346777777766665432 11222
Q ss_pred hhhHHHHHHHHHcCC-ChHHHHHHHhhcCC--CChhhHH-----HHHHHHHhcCCHHHHHHHHhcCCC-CCc--chHHHH
Q 048358 152 SITENALLDLYGKCD-ELIEAHKVFEEMTD--RDIVAWN-----NLISGYARLGQMKKARMLFDKMPY-TTI--VSWTAM 220 (541)
Q Consensus 152 ~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~-~~~--~~~~~l 220 (541)
-.++..|...|.... .+..+..++++..+ .+...|. -++..+.-..++..|.+++.--.. .|. ..|..+
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~ 167 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM 167 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence 235566677777665 67777777777654 2333332 345566667888888888654321 222 222222
Q ss_pred HH------HHHhcCC---hHHHHHHHHHHHHCCCCCChHH-------H-HHHHHHHHccCChHHHHHHHHHHHH
Q 048358 221 IS------GYTHIGS---YAEALDVFRQMQMVGIEPDEIS-------I-VSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 221 ~~------~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~-------~-~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
+. ...-..+ ++.+.....++.+. +.+|... | ..-+.-|...|+...+...++++.+
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~ 240 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQD 240 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHH
Confidence 21 1112223 34444444555543 3555432 1 1112334566777777666666554
No 441
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.11 E-value=3.3e+02 Score=27.73 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHhccCcHHHHHHHHHHhhhh---------------
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPN------------DITFIGLLSACAHTGFWNEGLMYFDSMKRD--------------- 379 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------- 379 (541)
....+++|...|.-....- .|+ ..+...+...+...|+.+.|-.+.++..-.
T Consensus 250 hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 3455667776666555432 222 223444555566677777777766654321
Q ss_pred ----cCCCCcHhHHHHH---HHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHH-hhcCCHHHHHHHHHHHhccC
Q 048358 380 ----HHIEHKIEHYGCL---VDLLGRAGRLDQALNIIEEM-PMKP--DAKIWGSLLSSC-RTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 380 ----~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~ 448 (541)
+..+-+...|.++ +..+.+.|.+..|.++.+-+ .+.| |+.....+|..| .+..+++--+++++.....+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 0111122223322 23445666677777666655 4444 344444555543 45566666666666654332
Q ss_pred ----CCCcchHHHHHHHHHhcCC
Q 048358 449 ----PEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 449 ----~~~~~~~~~l~~~~~~~g~ 467 (541)
-+|...-..++..|.+...
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCC
Confidence 3444333444444444433
No 442
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.00 E-value=3.7e+02 Score=28.36 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=101.2
Q ss_pred HHHHHHHHhccCCc---hhHHHHHHHHHHcCCChHHHHHHHhcCCC-CCc----------chHHHHHHHHHcCCChhHHH
Q 048358 32 KIHTQILKYLLSQS---NFLVTKMIDVCNSGGDLAYASLLFKQVKE-PNV----------FLYNAMIRAYTNNHLYGLAI 97 (541)
Q Consensus 32 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----------~~~~~ll~~~~~~g~~~~A~ 97 (541)
..+..|..+--.|+ +.+...++-.|-...+++...++.+.+.. ||. +.|.-.++---+-|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 44445555544454 44556666667777888888888877654 322 12333333334567888899
Q ss_pred HHHHHhhhCCCCCCCCCCCcccHHH-------HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC-hH
Q 048358 98 NLYKQMLRDPRTGSLILPDKFTLPF-------VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE-LI 169 (541)
Q Consensus 98 ~~~~~m~~~~~~~~~~~p~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~ 169 (541)
.+.-.|.+...+ +.||..+..- +-+.|...+..+.|..+|.+.-+ ++|+...--.+...+...|. ++
T Consensus 264 ~~~l~lve~eg~---vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 264 NTVLPLVEKEGP---VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHhcCC---CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhcc
Confidence 988888775431 2566544211 11123344556677777777765 45554433333333333332 22
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 170 EAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
...++ +. .--.|-..+++.|.+++-.+.|+-. ....+-.-.+++.+|...-+.|.+.
T Consensus 339 ns~El-q~-------IgmkLn~LlgrKG~leklq~YWdV~---------~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 339 NSLEL-QQ-------IGMKLNSLLGRKGALEKLQEYWDVA---------TYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred chHHH-HH-------HHHHHHHHhhccchHHHHHHHHhHH---------HhhhhhhhccCHHHHHHHHHHHhcc
Confidence 22211 10 0111223456667777666665432 2233444567777777777777655
No 443
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.47 E-value=3.1e+02 Score=27.25 Aligned_cols=374 Identities=11% Similarity=0.031 Sum_probs=189.4
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCCCCC-----cccHHHHHHHHhccC-CchHHHHHHHHHHHhC--CC-CchhhHHHHH
Q 048358 89 NNHLYGLAINLYKQMLRDPRTGSLILPD-----KFTLPFVIKSCAGLL-CPSLGKQIHAHVCKFG--LK-SHSITENALL 159 (541)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g--~~-~~~~~~~~l~ 159 (541)
-..+++.|...++......-+ -|+ -.++..|...+.... .+..++.++...++.. .+ ........|+
T Consensus 59 yT~N~elAksHLekA~~i~~~----ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLa 134 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKS----IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLA 134 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcc----cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 356677788777765432210 222 235666667776665 7888888888887642 11 2233345577
Q ss_pred HHHHcCCChHHHHHHHhhcCC-CCh--hhHHHHHH------HHHhcCCHHHHHHHHhcC---C---CCCcc--------h
Q 048358 160 DLYGKCDELIEAHKVFEEMTD-RDI--VAWNNLIS------GYARLGQMKKARMLFDKM---P---YTTIV--------S 216 (541)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~------~~~~~~~~~~A~~~~~~~---~---~~~~~--------~ 216 (541)
..+.-..|+..|.+++.---+ .|. ..|..++. ......+..+..++.... . .+|.. -
T Consensus 135 ql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 135 QLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY 214 (629)
T ss_pred HHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence 778888999999988654332 121 22322222 222233444444444433 2 22321 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---ccHhHHHHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMV---GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL---RRTVICNAL 290 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l 290 (541)
.+.-+.-|...|+...+...++++++. +..|+ ..+..-+ .-..... .+..+-+..+- .-..+...+
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~-~~h~e~i---lgsps~~----l~~wlpkeqicaLV~l~tv~hsm 286 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS-RGHDEKI---LGSPSPI----LFEWLPKEQICALVYLVTVIHSM 286 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC-CCccccc---cCCCChH----HHhhccHhhhHhhhhhhHHhhhh
Confidence 222234566678888777777766543 22221 0000000 0000000 00000000000 000011111
Q ss_pred HHHHHhc--CCHHHHHHHHHccCCCC--h--------hHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH------
Q 048358 291 IEMYIKC--GCINQASQLFDQMVERD--V--------VSWSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDI------ 351 (541)
Q Consensus 291 ~~~~~~~--g~~~~A~~~~~~~~~~~--~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~------ 351 (541)
..+|.+. +-.++|....++..+.+ . .+...++.+-.-.|++.+|++-...|.+.- -.|.+.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 2222211 12234444444444433 1 122233334445799999999888887631 123311
Q ss_pred -HHHHH-HHHHhccCcHHHHHHHHHHhhhhcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-----
Q 048358 352 -TFIGL-LSACAHTGFWNEGLMYFDSMKRDHHIEHKI--EHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWG----- 422 (541)
Q Consensus 352 -~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~----- 422 (541)
....+ .--|+..+.++.|..-|....+.. -..+. ..-..+...|.+.|+-+.-.++++.++- |+..++.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p-~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP-LNTNSLSSQRLE 444 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC-CCCCcchHHHHH
Confidence 11222 233456688999998888777642 12222 2224566788999999998899988841 2111111
Q ss_pred ---HHHHH--HhhcCCHHHHHHHHHHHhccCC-C-----CcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 423 ---SLLSS--CRTYSNLEIAVIAMEHLLVLEP-E-----DTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 423 ---~l~~~--~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.++.+ ....+++.+|...+.+.++... . ..-.+..|+..+...|+..++.+...
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 11122 3578899999999998887541 1 12244556777778888888876544
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.74 E-value=2.6e+02 Score=26.22 Aligned_cols=117 Identities=12% Similarity=0.167 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAH------TGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 403 (541)
.+++..++.+....+ .|.+......|.++.. .-+|.....+|+.+..- .|++ .+.|.-+ +..+..-.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehHHH-HHHHhhhHH
Confidence 577888888888887 5888888777776542 34677777888877653 3443 3344333 344444567
Q ss_pred HHHHHHHhCCCCCCH---HHHH-HHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 404 QALNIIEEMPMKPDA---KIWG-SLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 404 ~A~~~~~~~~~~p~~---~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.++...+.++-.|.. ..|. .=...+.+.|+.++|...|++++.+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 777777777544322 2222 223347899999999999999998876643
No 445
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.54 E-value=60 Score=18.75 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=8.7
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 048358 456 VLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~ 474 (541)
..++-.+...|++++|..+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444444455555555554
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.05 E-value=3e+02 Score=26.65 Aligned_cols=63 Identities=8% Similarity=0.009 Sum_probs=40.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVG--IEPDEISIVSVLPACAQLGSLELGEWIHMYCDK 277 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 277 (541)
..+.-+...|...|+++.|++.|.+.++-- .+-....|..+|....-.|+|.....+..++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356778889999999999999998865432 112233445555555666666665555554443
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.25 E-value=80 Score=25.49 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=29.0
Q ss_pred hhhhcCCCCChh--hHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCC
Q 048358 4 RIGALSIKELED--RFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60 (541)
Q Consensus 4 ~m~~~g~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 60 (541)
.+++.|+++++. ....+|......-.++.++..+.+.+...+..|.-.-++.+...|
T Consensus 11 ~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555544444 333344444444556666666666554444444444445555554
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.96 E-value=4.5e+02 Score=28.40 Aligned_cols=220 Identities=13% Similarity=0.036 Sum_probs=116.8
Q ss_pred HHhcCCHHHHHHHHhcCC----CCCc-------chHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCChHHHHHHH
Q 048358 193 YARLGQMKKARMLFDKMP----YTTI-------VSWTAMIS-GYTHIGSYAEALDVFRQMQMV----GIEPDEISIVSVL 256 (541)
Q Consensus 193 ~~~~~~~~~A~~~~~~~~----~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll 256 (541)
.....++.+|..+..+.. .++. ..|+.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 344778888888877653 3322 24444432 344578899999888877654 1223444556666
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCccHh---HHHHH--HHHHHhcCC--HHHHHHHHHccC-----CCC-----hhHHH
Q 048358 257 PACAQLGSLELGEWIHMYCDKNHLLRRTV---ICNAL--IEMYIKCGC--INQASQLFDQMV-----ERD-----VVSWS 319 (541)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~g~--~~~A~~~~~~~~-----~~~-----~~~~~ 319 (541)
.+..-.|++++|..+.....+..-..+.. .|..+ ...+...|+ +.+....|.... +.. ..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77778899999998888776653233333 23333 233455663 222333333321 111 22334
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhhhhcC---CCCcHhHHHHHH
Q 048358 320 TVIGGLANH-GKAHKAIHLFHEMQRLKVPPNDITF--IGLLSACAHTGFWNEGLMYFDSMKRDHH---IEHKIEHYGCLV 393 (541)
Q Consensus 320 ~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~ 393 (541)
.+..++.+. +...++..-+.--......|-.... ..|+......|++++|...++++..-.. ..++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1222222222222222212222222 3667788889999999998888865321 112222222222
Q ss_pred H--HHHhcCCHHHHHHHHHhC
Q 048358 394 D--LLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 394 ~--~~~~~g~~~~A~~~~~~~ 412 (541)
. .....|+...+.....+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 2 234678888888877764
No 449
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.56 E-value=59 Score=21.93 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 313 RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
+....++.++..++...-.++++..+.++...| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 334445555555555555566666666666655 344444444444443
No 450
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.37 E-value=3.3e+02 Score=26.72 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=26.2
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 318 WSTVIGGLAN---HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 318 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
+..++.++.+ ..+.+.|+.++..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3334444443 467888888888888888666654444444443
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.94 E-value=29 Score=27.27 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=23.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLP 257 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 257 (541)
....|.-..|-.+|++|++.|-+||. |+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34456667799999999999988884 444444
No 452
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=42.92 E-value=1.2e+02 Score=22.14 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=8.5
Q ss_pred HHHHHHcCCChhHHHHHH
Q 048358 83 MIRAYTNNHLYGLAINLY 100 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~ 100 (541)
++..+.+.++++-++..+
T Consensus 71 ~L~~L~~~~RF~l~~~fl 88 (94)
T PF13877_consen 71 ILEALSKVKRFDLAVMFL 88 (94)
T ss_pred HHHHhcCCCCHHHHHHhc
Confidence 344445555555544433
No 453
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.74 E-value=1.7e+02 Score=28.61 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 407 NIIEEMPMKPDA--KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 407 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.+|...+++|.. .++..-+..+.+.+++..|-.+.+++++++|+.
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344445666643 556777777899999999999999999998764
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.64 E-value=52 Score=30.12 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 048358 216 SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISI 252 (541)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (541)
-|+.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4567777777777777777777777777755433333
No 455
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.49 E-value=62 Score=23.55 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=12.7
Q ss_pred ChHHHHHHHhhcCCCChhhHHHHHHHHH
Q 048358 167 ELIEAHKVFEEMTDRDIVAWNNLISGYA 194 (541)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 194 (541)
..+++.++++.++.++..+|..+..++.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 3444444444444444444444444443
No 456
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=2.8e+02 Score=26.01 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHcc-------CCCChhHH--HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCH
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQM-------VERDVVSW--STVIGGLANHGKAHKAIHLFHEMQR-----LKVPPND 350 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~ 350 (541)
.....++...-+.++.++|.++++++ .+|+.+.| ..+..++...|+..++.+++.+... .|++|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HHHHHHHHH--HhccCcHHHHHH
Q 048358 351 ITFIGLLSA--CAHTGFWNEGLM 371 (541)
Q Consensus 351 ~~~~~l~~~--~~~~g~~~~a~~ 371 (541)
.+-...+.. |-..|++.....
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 457
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.78 E-value=2.9e+02 Score=25.56 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=28.5
Q ss_pred chHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHH
Q 048358 215 VSWTAMISGYTHIGSYAE-ALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGE 269 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 269 (541)
..|..++++---+.+-+. |...++.+ .+|..++.+++..|+.+...
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 468888876554433222 33333333 46788899999999887654
No 458
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.61 E-value=1.9e+02 Score=23.38 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 314 DVVSWSTVIGGLANHGK-AHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 34455566655543333 22344555566655556666666666666554
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.96 E-value=58 Score=29.81 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL 356 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (541)
-|+..|....+.||+++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3567788888888888888888888888865544555433
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.43 E-value=84 Score=26.17 Aligned_cols=58 Identities=7% Similarity=0.005 Sum_probs=0.0
Q ss_pred chhhhcCCCCChh--hHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCC
Q 048358 3 ARIGALSIKELED--RFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60 (541)
Q Consensus 3 ~~m~~~g~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 60 (541)
..+++.|++++.. ....+|.....+-++.+|++.+.+.+...+..|.-.-++.+.+.|
T Consensus 15 ~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 15 KLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.38 E-value=1.1e+02 Score=27.34 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444444
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.14 E-value=3.1e+02 Score=25.53 Aligned_cols=111 Identities=13% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhhcCC---CCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 048358 366 WNEGLMYFDSMKRDHHI---EHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAME 442 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (541)
.+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++...-..++.++....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56678888887763111 334555566777777888876666666666555678888889999988999999999999
Q ss_pred HHhccC-CCCcchHHHHHHHHHhcCC--HHHHHHHHHH
Q 048358 443 HLLVLE-PEDTGNYVLLSNIYAKHGR--WEDVSRMRKL 477 (541)
Q Consensus 443 ~~~~~~-~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 477 (541)
.+...+ .+.......+ ..+...+. .+.+.+.+..
T Consensus 226 ~~l~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVL-AGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHHH-HHHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHH-HHHhcCChhhHHHHHHHHHH
Confidence 998843 3333433333 34442333 3556655443
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.00 E-value=53 Score=29.96 Aligned_cols=55 Identities=7% Similarity=0.025 Sum_probs=36.1
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD 417 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 417 (541)
.+.|+.++|..+|+....- -+.++.....+........++-+|-.+|-+. .+.|.
T Consensus 127 ~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 4679999999999998863 2444554555555555556666777766555 56663
No 464
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.77 E-value=74 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=10.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 048358 254 SVLPACAQLGSLELGEWIHMYCD 276 (541)
Q Consensus 254 ~ll~~~~~~~~~~~a~~~~~~~~ 276 (541)
.++.++...|++++|.+++..+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555544443
No 465
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.20 E-value=2.5e+02 Score=24.14 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI 351 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 351 (541)
....+.++..+...|+++.|-+.|.-+.... +.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 3456778888888999999999999888754 44433
No 466
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.68 E-value=3.2e+02 Score=25.13 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHHHccCC-----CChhHHHHHHHHHHh-cC-ChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 300 INQASQLFDQMVE-----RDVVSWSTVIGGLAN-HG-KAHKAIHLFHEMQR-LKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 300 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
..+|+.+|+.... .|..+...+++.... .+ ....-.++.+-+.. .|..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4567777773311 355555555555554 21 12222222222222 2346777777788888888888888888
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+++......+...|...|..+++.....|+..-..++.++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88877764344556777888888888888888887777764
No 467
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=38.30 E-value=1.8e+02 Score=22.19 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=53.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~ 434 (541)
..+...|+.-+|+++.+++...+|-..+... ....+|. +|.+. --.||... .. .
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~------lh~~QG~------if~~lA~~ten~d~k~-~y----------L 60 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWL------LHRLQGT------IFYKLAKKTENPDVKF-RY----------L 60 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHH------HHHHHhH------HHHHHHHhccCchHHH-HH----------H
Confidence 4566678888888888887776543333211 1111221 11111 11233311 11 1
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 435 EIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
-.+.+.+.+...+.|..+..+..+++-+.....|+++..--++-
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRG 104 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 23566777777888887777777777666666677666555543
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.88 E-value=2e+02 Score=23.16 Aligned_cols=62 Identities=8% Similarity=-0.096 Sum_probs=39.4
Q ss_pred HHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCC
Q 048358 99 LYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCD 166 (541)
Q Consensus 99 ~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 166 (541)
+.+.+.+.|+ +++. .-..++..+.+.++.-.|.++++.+.+.++..+..|--..++.+...|
T Consensus 8 ~~~~lk~~gl-----r~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGL-----RLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCC-----CcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344555554 3333 334566666767677888888888888877766655555566666665
No 469
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.70 E-value=87 Score=18.40 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+|..|+..-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888887777654
No 470
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.60 E-value=1.2e+02 Score=27.41 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.++.+.++++.|....++.+.++|.++.-+..-+-+|.+.|.+.-|.+-+....+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 45788999999999999999999999988888899999999999998887775443
No 471
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.26 E-value=1.6e+02 Score=21.17 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=22.9
Q ss_pred hcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChH
Q 048358 296 KCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAH 332 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (541)
...+.+++.++++.++..++.+|..+..++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3345666666666666666666666666666555443
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.91 E-value=6e+02 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhhhC
Q 048358 77 VFLYNAMIRAYTNNHLYGLAINLYKQMLRD 106 (541)
Q Consensus 77 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 106 (541)
..-|..|+..|...|+.++|+++|.+....
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 346889999999999999999999998763
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.88 E-value=1.8e+02 Score=27.43 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=31.7
Q ss_pred HHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 402 LDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
.++...+++++ .--|+ ...|-+++......|.++.++.+|++++..+..
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 44666667655 22244 355666777777777778888888887776633
No 474
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.57 E-value=1.1e+02 Score=19.08 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=20.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 358 (541)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666677777777776666666655543
No 475
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.48 E-value=82 Score=17.72 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
.++.|..+|++.+...|. +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467788888888777644 56665544
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.42 E-value=2.2e+02 Score=25.50 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 403 DQALNIIEEMPMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 403 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
..|.+.|...+..- -......+..-|.+.|++++|..+++.+...- .....+...+..++.+.|+.++...+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34555555554211 22333345566999999999999999996532 223456677888889999999988775
Q ss_pred HHh
Q 048358 476 KLI 478 (541)
Q Consensus 476 ~~m 478 (541)
=++
T Consensus 242 leL 244 (247)
T PF11817_consen 242 LEL 244 (247)
T ss_pred HHH
Confidence 544
No 477
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.05 E-value=3e+02 Score=24.17 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHh-ccCCCCcc
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-----DAKIWGSLLSSCRTYSNLEIAVIAMEHLL-VLEPEDTG 453 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 453 (541)
.+.+...-++.|+--|.-...+.+|.+.|..- ++.| +...-..-+......|+++.|++....+. ++--.|..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Q ss_pred hHHHHHHH----HHhcCCHHHHHHHHHH
Q 048358 454 NYVLLSNI----YAKHGRWEDVSRMRKL 477 (541)
Q Consensus 454 ~~~~l~~~----~~~~g~~~~A~~~~~~ 477 (541)
.+..|... +.+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 478
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.86 E-value=3.9e+02 Score=30.18 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=97.4
Q ss_pred HHHhcCChHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCC--CCcHhHHHH
Q 048358 324 GLANHGKAHKAIH------LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHI--EHKIEHYGC 391 (541)
Q Consensus 324 ~~~~~~~~~~a~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~~~ 391 (541)
.....|.+.++.+ ++......-.++....|..+...+.+.|+.++|+..-.+..- ..|. +.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566666655 555333332356667888888889999999998876544321 0111 223445666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------CCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHhccC-----CC---Ccc
Q 048358 392 LVDLLGRAGRLDQALNIIEEM---------PMKPDAKIW-GSLLSSCRTYSNLEIAVIAMEHLLVLE-----PE---DTG 453 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~---~~~ 453 (541)
+.......+....|...+.+. +..|..... ..+-..+...++++.|.+..+.+.+.. |. ...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666777777777766654 234554433 433333455588999999998888643 22 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.+..+++.+...|++..|....+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 777888888888888887765444
No 479
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.42 E-value=87 Score=20.84 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=24.6
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHh-----ccCCchHHHH
Q 048358 87 YTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCA-----GLLCPSLGKQ 138 (541)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-----~~~~~~~a~~ 138 (541)
+...|++-+|-++++.+-.... .|....+..+|+... +.|+.+.|..
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~-----~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAP-----GPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT------CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCC-----cchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4557777788888887765431 333444444544332 3455554443
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.92 E-value=4.5e+02 Score=25.83 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
...|+.-|...|+..+|....+++ |+|. ....+..++.+..+.|+-...+.+++..-+. ...|-+.|-.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhh
Confidence 455777788888888888877664 3222 2346777788888888877777777766653 33444555566
Q ss_pred HHhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhcC
Q 048358 396 LGRAGRLDQALNIIEEMP-MKPDA-KIWGSLLSSCRTYS 432 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~ 432 (541)
|.|.. .-+..+. --|+. ..|+..+.-|.+.|
T Consensus 584 f~RV~------dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 584 FERVY------DSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred hhhhh------ccCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 54422 1222221 12443 45666666666666
No 481
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.75 E-value=1.2e+02 Score=21.87 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=18.5
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHH
Q 048358 164 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMK 200 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (541)
+....++|..+++.++.++..+|..+..++-..|...
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 3344555555555555555555555555544444333
No 482
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.35 E-value=3.7e+02 Score=27.00 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=48.1
Q ss_pred HhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCC
Q 048358 39 KYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPD 116 (541)
Q Consensus 39 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~ 116 (541)
+.|+..+......++. ...|+...|+.++++... .+..++..+ .++. | .++
T Consensus 195 ~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V-----------------~~~l--g------~~~ 247 (484)
T PRK14956 195 IENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKI-----------------RKMI--G------YHG 247 (484)
T ss_pred HcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHH-----------------HHHh--C------CCC
Confidence 3466666666655554 344777777777776321 111111111 1111 3 344
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh
Q 048358 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI 153 (541)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 153 (541)
...+..++.+....+....+..+++.+++.|..|...
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 4555556665555555567888888888888665543
No 483
>PRK09857 putative transposase; Provisional
Probab=34.20 E-value=3.1e+02 Score=25.34 Aligned_cols=64 Identities=6% Similarity=0.059 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
..++.-....++.++..++++.+.+..|...+...+++.-+.+.|.-+++.++.++|...|+..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3344433456777777777777776666666677788888888888888999999999888754
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.16 E-value=72 Score=33.83 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 398 RAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
.+|+.+.|++.-.++. +..+|..|.....++|+.+-|+..|++..
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 4455555555444442 34455555555555555555555554443
No 485
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.12 E-value=1.3e+02 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred cCCCCChhhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHH
Q 048358 8 LSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKM 52 (541)
Q Consensus 8 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 52 (541)
+|..|++--| |..|...+.+..|.+.+.++| ..++...+.|
T Consensus 31 ~gy~PtV~D~---L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 31 SGYNPTVIDF---LRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred CCCCchHHHH---HHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
No 486
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.88 E-value=4e+02 Score=24.91 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHh
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDIT---FIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
|..+..+.|+..+|.+.++.+.+. .|-... -..|+.++....-+.....++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445567777777777666543 221111 224555555555555554444443
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.26 E-value=5.3e+02 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEM 341 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m 341 (541)
.++.-|.+.++.++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3555566666666666665554
No 488
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.91 E-value=4.5e+02 Score=25.23 Aligned_cols=124 Identities=11% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHH-HHHHhc-CCHHHHHHHHhcCCCCCcchHHHH---HHH
Q 048358 149 KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI-SGYARL-GQMKKARMLFDKMPYTTIVSWTAM---ISG 223 (541)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~l---~~~ 223 (541)
+-...++-.+...+...|+...|.+++++.. .++.... ..+... .+......-++--...|-..|-++ |..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL----f~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL----FAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3455666667777777788777777776642 1111000 000000 000000000000011233344433 456
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-HccCChHHHHHHHHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPAC-AQLGSLELGEWIHMYCD 276 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~ 276 (541)
+.+.|-+..|+++.+-+...+..-|.......|..| .+.++++-..++.+...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 777888888888888888765333555555566655 34555555555555443
No 489
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.53 E-value=4.9e+02 Score=25.54 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLA 326 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 326 (541)
+....+.++...+...-...+..-+..+++......+.++.
T Consensus 102 vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 102 LCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444444444444444433333333344433333333333
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=1.8e+02 Score=21.60 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=16.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 451 DTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.|..+..|+..|.+.|+-+.|.+-|+.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 345556666666666666666665554
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.76 E-value=2.5e+02 Score=21.86 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 048358 459 SNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~ 477 (541)
+.++...|+.++|...|+.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 3445566777777766654
No 492
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.10 E-value=2.9e+02 Score=27.61 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFD 374 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~ 374 (541)
.|-.++.-|...++++.|.++-+
T Consensus 575 py~~iL~e~~sssKWeqavRLCr 597 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCR 597 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHH
Confidence 34444444555555555554444
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.67 E-value=5.1e+02 Score=25.12 Aligned_cols=56 Identities=7% Similarity=-0.121 Sum_probs=36.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHHc--cCChHHHHHHHHHHHHh
Q 048358 222 SGYTHIGSYAEALDVFRQMQMVGIEPDEI--SIVSVLPACAQ--LGSLELGEWIHMYCDKN 278 (541)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 278 (541)
..+.+.+++..|.++|..+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778889999999888876 555444 34445555544 33566777777766554
No 494
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.47 E-value=3.9e+02 Score=23.69 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=18.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCC
Q 048358 325 LANHGKAHKAIHLFHEMQRLKV 346 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~ 346 (541)
+...|+++.|+++..-+++.|.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC
Confidence 4567899999999999988884
No 495
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.47 E-value=3.9e+02 Score=23.76 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=81.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH-TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA 399 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (541)
++..+-+.++++++...++++...+...+..-.+.|-.+|-. .|....+++++..+.....-..+ .....++..|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455666778888888888888887656666555555555532 34455556666555443211111 1223333333211
Q ss_pred ------CCHHHHHHHHHhC--C--CCCCHHHHHHHHHH-Hh----h--c-----CCHHHHHHHHHHHhc-----cCCCCc
Q 048358 400 ------GRLDQALNIIEEM--P--MKPDAKIWGSLLSS-CR----T--Y-----SNLEIAVIAMEHLLV-----LEPEDT 452 (541)
Q Consensus 400 ------g~~~~A~~~~~~~--~--~~p~~~~~~~l~~~-~~----~--~-----~~~~~a~~~~~~~~~-----~~~~~~ 452 (541)
.-..+.+.+++.. + ..+....|..-+.| |. . . .-.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1133455555553 1 12223333222222 11 1 1 123667777777764 346665
Q ss_pred chHHHHHH----HHHhcCCHHHHHHHHHHhhhCCC
Q 048358 453 GNYVLLSN----IYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 453 ~~~~~l~~----~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
.-+...++ .|...|+.++|.++.+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 53333322 34568999999998888766543
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.38 E-value=60 Score=21.88 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=12.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 79 LYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 79 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
.++.++...++..-.++++..+.+..+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444444
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.94 E-value=2.1e+02 Score=20.58 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 138 QIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
++|+.....|+..|+.+|..+++.+.-.=-.+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777888888888888888887776666777777777764
No 498
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.59 E-value=4.6e+02 Score=24.35 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh----------cCCHHHHHHHHh
Q 048358 138 QIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR----------LGQMKKARMLFD 207 (541)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~ 207 (541)
++++.+.+.++.|.-..+.=+.-.+.+.=.+.+.+.+|+.+..... -|..++..|+. .|++....++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 5566666666666666665555556666666777777776654211 14444443333 677888888877
Q ss_pred cCCCCCcchHHHHHHH
Q 048358 208 KMPYTTIVSWTAMISG 223 (541)
Q Consensus 208 ~~~~~~~~~~~~l~~~ 223 (541)
.-+..|+...-.++..
T Consensus 343 ~yp~tdi~~~l~~A~~ 358 (370)
T KOG4567|consen 343 NYPTTDISKMLAVADS 358 (370)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 7666665544444443
No 499
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.48 E-value=7.7e+02 Score=26.86 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048358 293 MYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMY 372 (541)
Q Consensus 293 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 372 (541)
....+|+++.|++.-..+-+ ..+|..|......+|+.+-|+..|++... |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 45567888888887766554 45789999999999999999999887654 33444456677888887776
Q ss_pred HHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 373 FDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
......+ .|..+ ....-.-.|+.++-.++++..+..|-. |. ....+|.-++|.++.++..+
T Consensus 721 ~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 6666543 23321 112222368899999999998754422 21 12457888889888888776
No 500
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.37 E-value=2.8e+02 Score=28.69 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhc-CCCCcHhHHHHHHHHHHhcCCHH------HHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDH-HIEHKIEHYGCLVDLLGRAGRLD------QALNIIEEMPMKPDAKIWGSLLSS 427 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~l~~~ 427 (541)
.|+.+|...|++..+.++++.....+ |-..-...||..++.+.+.|.++ .|.+.++...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 45555555566655555555554321 11112334555555555555432 344444444444555566555554
Done!