Query 048358
Match_columns 541
No_of_seqs 593 out of 3838
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 15:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5E-41 1.7E-45 345.3 38.6 443 44-524 82-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-40 6.6E-45 341.0 30.8 444 55-539 62-577 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.7E-29 2.3E-33 240.7 40.5 372 84-467 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.1E-29 3.1E-33 239.7 41.2 373 123-527 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.3E-28 2.2E-32 237.6 23.4 183 215-398 27-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.2E-26 4.1E-31 228.5 23.1 200 231-431 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.9E-25 1.7E-29 221.8 35.3 424 46-481 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 9.8E-25 3.3E-29 219.6 29.5 427 20-458 15-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 5.5E-24 1.9E-28 215.4 34.2 420 45-482 24-492 (537)
10 3fp2_A TPR repeat-containing p 99.9 3E-25 1E-29 224.7 20.8 424 77-539 25-489 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6.3E-28 206.6 32.3 362 151-532 25-445 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 4.6E-23 1.6E-27 203.7 34.0 316 182-528 25-379 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 4.3E-21 1.5E-25 183.3 35.2 324 152-529 3-357 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.2E-20 2.5E-24 174.8 31.9 322 116-465 2-353 (359)
15 3hym_B Cell division cycle pro 99.9 7.8E-20 2.7E-24 172.4 31.5 285 212-527 20-319 (330)
16 1fch_A Peroxisomal targeting s 99.9 5.1E-20 1.7E-24 176.7 22.3 296 195-539 37-357 (368)
17 3hym_B Cell division cycle pro 99.9 1.2E-18 4E-23 164.3 30.4 290 149-469 19-322 (330)
18 2xm6_A Protein corresponding t 99.8 1.7E-17 5.8E-22 165.4 38.4 365 76-464 38-452 (490)
19 1xi4_A Clathrin heavy chain; a 99.8 8E-17 2.7E-21 168.2 43.5 396 76-538 984-1381(1630)
20 1fch_A Peroxisomal targeting s 99.8 3.1E-19 1.1E-23 171.1 24.0 297 161-478 34-356 (368)
21 1b89_A Protein (clathrin heavy 99.8 2.7E-19 9.1E-24 168.0 22.1 288 58-412 15-308 (449)
22 2ooe_A Cleavage stimulation fa 99.8 3.2E-17 1.1E-21 165.1 38.3 409 43-482 10-493 (530)
23 1xi4_A Clathrin heavy chain; a 99.8 1.2E-16 4.1E-21 167.0 41.8 411 12-475 951-1378(1630)
24 2xm6_A Protein corresponding t 99.8 2.1E-16 7.1E-21 157.5 42.2 362 96-483 26-434 (490)
25 3mkr_A Coatomer subunit epsilo 99.8 1.8E-17 6E-22 152.5 30.5 267 195-475 11-288 (291)
26 2ooe_A Cleavage stimulation fa 99.8 9.1E-17 3.1E-21 161.8 38.4 373 76-482 12-455 (530)
27 4eqf_A PEX5-related protein; a 99.8 8.5E-19 2.9E-23 168.0 21.8 260 213-477 64-352 (365)
28 4eqf_A PEX5-related protein; a 99.8 3E-19 1E-23 171.2 18.3 274 248-538 64-353 (365)
29 4g1t_A Interferon-induced prot 99.8 1.4E-17 4.6E-22 165.6 28.4 363 117-492 51-470 (472)
30 4g1t_A Interferon-induced prot 99.8 2.7E-17 9.2E-22 163.4 30.0 349 150-540 49-458 (472)
31 1b89_A Protein (clathrin heavy 99.8 1.6E-17 5.6E-22 155.9 26.2 363 13-420 5-377 (449)
32 3cv0_A Peroxisome targeting si 99.8 9.5E-18 3.3E-22 157.8 24.6 277 214-540 21-314 (327)
33 3cv0_A Peroxisome targeting si 99.8 1E-17 3.4E-22 157.7 23.8 275 182-479 20-313 (327)
34 3mkr_A Coatomer subunit epsilo 99.8 2.9E-18 9.8E-23 157.8 18.0 245 221-480 6-263 (291)
35 2pl2_A Hypothetical conserved 99.7 2.2E-16 7.6E-21 138.7 18.9 193 282-477 3-210 (217)
36 2pl2_A Hypothetical conserved 99.7 6.4E-16 2.2E-20 135.8 19.1 195 246-445 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.2E-20 137.3 22.2 211 258-481 14-236 (258)
38 3uq3_A Heat shock protein STI1 99.7 9.4E-16 3.2E-20 138.7 20.0 237 215-461 6-256 (258)
39 3u4t_A TPR repeat-containing p 99.7 5.7E-15 2E-19 134.8 22.5 246 217-466 6-269 (272)
40 3u4t_A TPR repeat-containing p 99.6 1.6E-14 5.3E-19 131.9 20.6 244 251-524 5-267 (272)
41 3e4b_A ALGK; tetratricopeptide 99.6 1.7E-14 5.7E-19 141.6 22.0 343 122-482 8-388 (452)
42 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-16 6.3E-21 160.7 8.1 146 184-329 128-286 (1134)
43 2vq2_A PILW, putative fimbrial 99.6 6.1E-14 2.1E-18 123.8 23.5 198 283-481 7-211 (225)
44 3sf4_A G-protein-signaling mod 99.6 3.7E-15 1.3E-19 144.7 16.9 299 215-534 10-369 (406)
45 2q7f_A YRRB protein; TPR, prot 99.6 6.4E-15 2.2E-19 131.9 17.2 196 283-481 22-222 (243)
46 3spa_A Mtrpol, DNA-directed RN 99.6 7.4E-17 2.5E-21 163.5 4.7 148 45-197 126-286 (1134)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-14 1.1E-18 130.1 21.8 242 225-475 16-269 (275)
48 2h6f_A Protein farnesyltransfe 99.6 4E-14 1.4E-18 134.6 22.7 245 215-525 98-366 (382)
49 2h6f_A Protein farnesyltransfe 99.6 5.4E-14 1.9E-18 133.6 22.8 244 183-465 97-366 (382)
50 3e4b_A ALGK; tetratricopeptide 99.6 1E-13 3.4E-18 136.0 25.4 376 82-481 8-421 (452)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5.1E-19 132.2 18.1 242 260-535 16-269 (275)
52 2ho1_A Type 4 fimbrial biogene 99.6 8.3E-14 2.8E-18 125.5 22.6 197 284-481 37-238 (252)
53 2q7f_A YRRB protein; TPR, prot 99.6 4E-14 1.4E-18 126.7 17.7 213 215-466 24-241 (243)
54 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-13 4.8E-18 117.4 19.8 166 314-482 4-171 (184)
55 1ouv_A Conserved hypothetical 99.6 5.8E-13 2E-17 121.5 25.3 224 213-482 5-252 (273)
56 2ho1_A Type 4 fimbrial biogene 99.6 6.1E-13 2.1E-17 119.8 24.9 204 215-456 38-247 (252)
57 1ouv_A Conserved hypothetical 99.6 7.5E-13 2.6E-17 120.8 25.6 192 283-483 5-217 (273)
58 4a1s_A PINS, partner of inscut 99.6 3.3E-14 1.1E-18 138.3 17.1 264 217-481 51-372 (411)
59 2vq2_A PILW, putative fimbrial 99.6 1.3E-12 4.5E-17 115.1 24.3 207 214-458 8-222 (225)
60 3vtx_A MAMA; tetratricopeptide 99.6 5.2E-14 1.8E-18 120.1 14.6 165 348-540 3-169 (184)
61 4abn_A Tetratricopeptide repea 99.6 4.8E-14 1.7E-18 139.2 16.3 206 265-475 84-315 (474)
62 3ro2_A PINS homolog, G-protein 99.6 6.1E-14 2.1E-18 132.0 16.0 264 217-481 8-332 (338)
63 4e6h_A MRNA 3'-END-processing 99.6 1.9E-11 6.3E-16 124.0 34.5 409 34-452 55-575 (679)
64 4abn_A Tetratricopeptide repea 99.5 3.3E-13 1.1E-17 133.2 18.7 212 228-444 82-318 (474)
65 4a1s_A PINS, partner of inscut 99.5 2.4E-14 8.1E-19 139.3 10.1 269 251-539 50-370 (411)
66 3sf4_A G-protein-signaling mod 99.5 2.3E-13 7.9E-18 131.9 15.0 294 150-469 7-364 (406)
67 3ro2_A PINS homolog, G-protein 99.5 1.1E-13 3.6E-18 130.4 11.7 269 251-539 7-330 (338)
68 2ond_A Cleavage stimulation fa 99.5 2.7E-11 9.1E-16 112.5 27.6 218 231-452 33-275 (308)
69 3ulq_A Response regulator aspa 99.5 2E-12 6.8E-17 124.4 19.4 221 259-480 113-367 (383)
70 4i17_A Hypothetical protein; T 99.5 2.5E-12 8.6E-17 113.8 18.2 206 283-524 6-226 (228)
71 3ulq_A Response regulator aspa 99.5 1.6E-12 5.4E-17 125.1 17.8 224 289-539 108-366 (383)
72 4gyw_A UDP-N-acetylglucosamine 99.5 4.2E-13 1.4E-17 137.7 14.4 163 315-480 9-173 (723)
73 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.7E-17 133.9 17.7 167 281-450 6-177 (723)
74 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-13 9E-18 126.3 10.8 235 215-480 28-306 (311)
75 2ond_A Cleavage stimulation fa 99.4 3.7E-12 1.3E-16 118.3 18.1 245 266-519 33-304 (308)
76 3as5_A MAMA; tetratricopeptide 99.4 8.1E-12 2.8E-16 106.2 18.2 161 318-481 11-173 (186)
77 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-13 6.3E-18 127.3 7.5 237 283-539 26-305 (311)
78 4e6h_A MRNA 3'-END-processing 99.4 9.1E-10 3.1E-14 111.7 33.8 401 75-483 64-572 (679)
79 4i17_A Hypothetical protein; T 99.4 2E-11 6.9E-16 107.9 19.1 206 247-462 5-224 (228)
80 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.6E-15 109.2 27.9 261 220-480 20-321 (373)
81 3q15_A PSP28, response regulat 99.4 5.3E-11 1.8E-15 114.1 22.3 195 285-480 142-364 (378)
82 3qky_A Outer membrane assembly 99.4 5.2E-11 1.8E-15 107.7 20.5 217 283-539 14-259 (261)
83 3as5_A MAMA; tetratricopeptide 99.4 7.1E-11 2.4E-15 100.3 19.1 168 284-454 8-180 (186)
84 4ga2_A E3 SUMO-protein ligase 99.3 3.1E-12 1.1E-16 104.7 8.4 144 356-527 3-149 (150)
85 3edt_B KLC 2, kinesin light ch 99.3 1.6E-12 5.5E-17 119.0 7.1 190 351-540 44-280 (283)
86 3q15_A PSP28, response regulat 99.3 5.6E-11 1.9E-15 113.9 17.7 226 287-539 104-363 (378)
87 3qou_A Protein YBBN; thioredox 99.3 3.9E-11 1.3E-15 109.9 13.5 165 347-539 114-282 (287)
88 3mv2_B Coatomer subunit epsilo 99.3 1.1E-09 3.7E-14 98.7 22.2 173 303-480 85-281 (310)
89 1hz4_A MALT regulatory protein 99.3 6.7E-09 2.3E-13 99.2 29.3 266 83-377 20-320 (373)
90 3edt_B KLC 2, kinesin light ch 99.2 4.7E-11 1.6E-15 109.1 12.6 197 284-480 43-280 (283)
91 2r5s_A Uncharacterized protein 99.2 6.9E-11 2.3E-15 99.7 11.6 162 352-539 8-171 (176)
92 2pzi_A Probable serine/threoni 99.2 2.7E-11 9.4E-16 125.0 10.8 172 326-527 402-583 (681)
93 1qqe_A Vesicular transport pro 99.2 3.2E-10 1.1E-14 104.2 16.9 166 286-451 79-273 (292)
94 3qky_A Outer membrane assembly 99.2 2.9E-10 1E-14 102.7 15.7 167 348-539 13-222 (261)
95 4ga2_A E3 SUMO-protein ligase 99.2 2.1E-11 7.3E-16 99.6 7.0 143 322-467 4-149 (150)
96 1qqe_A Vesicular transport pro 99.2 4.2E-10 1.4E-14 103.5 14.6 227 232-479 3-267 (292)
97 3mv2_B Coatomer subunit epsilo 99.2 3.2E-09 1.1E-13 95.7 19.6 179 268-454 85-289 (310)
98 2pzi_A Probable serine/threoni 99.2 1.6E-10 5.4E-15 119.3 12.5 169 295-467 402-583 (681)
99 2fo7_A Synthetic consensus TPR 99.1 1.5E-09 5E-14 86.5 15.1 127 353-481 4-132 (136)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.1E-09 1E-13 93.5 18.1 183 284-485 4-217 (225)
101 3qou_A Protein YBBN; thioredox 99.1 1.6E-09 5.3E-14 99.2 16.1 176 300-479 102-282 (287)
102 4gco_A Protein STI-1; structur 99.1 5.4E-10 1.9E-14 88.0 11.0 110 386-521 13-124 (126)
103 2fo7_A Synthetic consensus TPR 99.1 3.5E-09 1.2E-13 84.3 15.9 131 317-450 3-135 (136)
104 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.7E-10 2.3E-14 97.8 11.9 187 315-538 4-210 (225)
105 3urz_A Uncharacterized protein 99.1 5.4E-10 1.8E-14 97.0 10.9 161 316-480 5-185 (208)
106 3rjv_A Putative SEL1 repeat pr 99.1 1.5E-08 5.2E-13 88.0 19.3 172 303-483 5-199 (212)
107 3urz_A Uncharacterized protein 99.1 4.4E-09 1.5E-13 91.2 15.5 130 319-451 58-190 (208)
108 2r5s_A Uncharacterized protein 99.0 1.5E-09 5.1E-14 91.4 11.7 159 318-480 9-172 (176)
109 2uy1_A Cleavage stimulation fa 99.0 8E-08 2.7E-12 94.6 25.6 363 48-446 17-412 (493)
110 2vsy_A XCC0866; transferase, g 99.0 2.6E-09 8.8E-14 108.3 15.1 160 297-459 2-169 (568)
111 3gyz_A Chaperone protein IPGC; 99.0 1.2E-10 4E-15 94.7 3.5 97 385-481 35-133 (151)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 8.1E-09 2.8E-13 95.6 15.7 219 226-474 3-254 (307)
113 3gyz_A Chaperone protein IPGC; 99.0 2.8E-09 9.6E-14 86.5 10.4 102 349-452 35-138 (151)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.2E-09 1.1E-13 92.4 11.7 142 388-540 8-149 (213)
115 2vgx_A Chaperone SYCD; alterna 99.0 2.2E-09 7.4E-14 87.3 9.8 108 372-481 9-118 (148)
116 2vsy_A XCC0866; transferase, g 99.0 9.5E-09 3.2E-13 104.1 16.6 147 262-412 2-154 (568)
117 3dra_A Protein farnesyltransfe 99.0 2.1E-07 7.3E-12 84.7 23.2 149 329-480 124-286 (306)
118 4gco_A Protein STI-1; structur 99.0 9.2E-09 3.2E-13 80.9 12.1 110 351-462 14-125 (126)
119 2lni_A Stress-induced-phosphop 98.9 1.7E-08 5.9E-13 80.1 13.8 119 383-527 13-133 (133)
120 3u3w_A Transcriptional activat 98.9 2.9E-07 9.8E-12 84.5 22.6 161 320-480 80-265 (293)
121 2vyi_A SGTA protein; chaperone 98.9 2.3E-08 7.8E-13 79.0 13.2 118 385-528 11-130 (131)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.7E-08 2.6E-12 83.5 17.5 145 287-451 9-154 (213)
123 3upv_A Heat shock protein STI1 98.9 1.6E-08 5.3E-13 79.7 11.8 120 385-524 3-124 (126)
124 3dra_A Protein farnesyltransfe 98.9 2.5E-06 8.4E-11 77.7 27.1 230 225-460 43-301 (306)
125 2ifu_A Gamma-SNAP; membrane fu 98.9 9.8E-09 3.3E-13 95.0 11.4 196 261-479 3-222 (307)
126 1na0_A Designed protein CTPR3; 98.9 4.8E-08 1.6E-12 76.3 13.7 94 387-480 10-105 (125)
127 2qfc_A PLCR protein; TPR, HTH, 98.9 1.1E-07 3.9E-12 87.2 17.7 163 317-480 77-265 (293)
128 2xcb_A PCRH, regulatory protei 98.9 1.7E-08 5.8E-13 81.4 10.6 97 385-481 17-115 (142)
129 2c2l_A CHIP, carboxy terminus 98.8 1.8E-08 6.1E-13 91.8 11.9 192 283-481 3-199 (281)
130 2fbn_A 70 kDa peptidylprolyl i 98.8 8E-09 2.7E-13 88.8 8.8 145 362-534 16-178 (198)
131 3rjv_A Putative SEL1 repeat pr 98.8 1.4E-07 4.9E-12 81.8 16.8 175 268-450 5-200 (212)
132 1a17_A Serine/threonine protei 98.8 7.4E-08 2.5E-12 79.8 14.4 128 351-480 14-145 (166)
133 1p5q_A FKBP52, FK506-binding p 98.8 1.1E-08 3.8E-13 95.8 9.1 128 349-478 146-291 (336)
134 2uy1_A Cleavage stimulation fa 98.8 2.9E-06 1E-10 83.5 26.3 354 90-480 7-412 (493)
135 1na0_A Designed protein CTPR3; 98.8 1.1E-07 3.9E-12 74.1 13.4 115 350-466 9-125 (125)
136 3rkv_A Putative peptidylprolyl 98.8 3.9E-08 1.3E-12 81.3 11.0 93 418-536 63-156 (162)
137 2vyi_A SGTA protein; chaperone 98.8 6.9E-08 2.3E-12 76.1 11.5 118 349-468 11-130 (131)
138 3sz7_A HSC70 cochaperone (SGT) 98.8 4.5E-08 1.5E-12 81.1 10.6 105 350-456 11-117 (164)
139 2lni_A Stress-induced-phosphop 98.8 9.6E-08 3.3E-12 75.6 12.2 118 348-467 14-133 (133)
140 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-08 5.7E-13 82.0 7.8 117 337-456 9-127 (148)
141 1a17_A Serine/threonine protei 98.8 5.8E-08 2E-12 80.4 11.3 126 386-537 13-142 (166)
142 1p5q_A FKBP52, FK506-binding p 98.8 7.4E-08 2.5E-12 90.2 12.9 145 299-446 128-293 (336)
143 2dba_A Smooth muscle cell asso 98.7 1.2E-07 4.3E-12 76.6 12.6 97 384-480 26-127 (148)
144 1elw_A TPR1-domain of HOP; HOP 98.7 2.8E-07 9.4E-12 71.1 14.1 95 386-480 4-100 (118)
145 2l6j_A TPR repeat-containing p 98.7 1.5E-07 5.2E-12 71.8 12.4 99 416-540 2-106 (111)
146 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.6E-12 80.0 12.4 118 362-481 22-144 (177)
147 3u3w_A Transcriptional activat 98.7 2E-06 6.8E-11 78.8 21.7 159 289-447 80-266 (293)
148 1hxi_A PEX5, peroxisome target 98.7 2.2E-08 7.6E-13 78.0 7.3 94 388-481 19-114 (121)
149 4gcn_A Protein STI-1; structur 98.7 9.3E-09 3.2E-13 81.0 4.4 103 418-539 8-110 (127)
150 3q49_B STIP1 homology and U bo 98.7 1.3E-07 4.5E-12 75.4 11.3 99 383-481 6-106 (137)
151 2qfc_A PLCR protein; TPR, HTH, 98.7 9.4E-07 3.2E-11 81.0 18.3 163 285-447 76-266 (293)
152 2c2l_A CHIP, carboxy terminus 98.7 1.2E-07 4E-12 86.4 11.9 193 314-540 3-198 (281)
153 2xcb_A PCRH, regulatory protei 98.7 5E-08 1.7E-12 78.6 8.3 108 350-459 18-127 (142)
154 2e2e_A Formate-dependent nitri 98.7 1.5E-07 5.3E-12 79.0 11.3 127 326-455 21-152 (177)
155 1hxi_A PEX5, peroxisome target 98.7 9.8E-08 3.3E-12 74.3 8.9 99 352-452 19-119 (121)
156 3gw4_A Uncharacterized protein 98.7 4.9E-07 1.7E-11 77.6 14.2 153 327-480 4-175 (203)
157 3upv_A Heat shock protein STI1 98.6 2.2E-07 7.7E-12 72.9 10.9 111 351-463 5-123 (126)
158 2fbn_A 70 kDa peptidylprolyl i 98.6 1.9E-08 6.5E-13 86.4 5.0 97 386-482 88-187 (198)
159 2kck_A TPR repeat; tetratricop 98.6 1.9E-07 6.4E-12 71.3 10.0 99 385-483 5-108 (112)
160 4f3v_A ESX-1 secretion system 98.6 7.7E-07 2.6E-11 79.1 15.0 134 320-458 107-247 (282)
161 3q7a_A Farnesyltransferase alp 98.6 6.6E-06 2.2E-10 75.7 21.5 227 223-481 63-331 (349)
162 4gcn_A Protein STI-1; structur 98.6 1.3E-07 4.5E-12 74.4 8.9 95 386-480 8-111 (127)
163 4f3v_A ESX-1 secretion system 98.6 6.7E-07 2.3E-11 79.5 14.4 183 296-483 18-239 (282)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 8.3E-08 2.9E-12 93.9 9.0 127 350-478 268-412 (457)
165 3gw4_A Uncharacterized protein 98.6 4.7E-07 1.6E-11 77.7 12.8 152 296-447 4-176 (203)
166 1elw_A TPR1-domain of HOP; HOP 98.6 8.8E-07 3E-11 68.1 13.2 111 350-462 4-116 (118)
167 1dce_A Protein (RAB geranylger 98.6 6.8E-07 2.3E-11 89.5 15.5 173 329-530 43-244 (567)
168 1wao_1 Serine/threonine protei 98.6 1.6E-07 5.5E-12 92.3 10.8 119 392-536 12-134 (477)
169 3sz7_A HSC70 cochaperone (SGT) 98.6 4.7E-07 1.6E-11 74.9 12.0 95 386-480 11-107 (164)
170 3q7a_A Farnesyltransferase alp 98.6 4.3E-05 1.5E-09 70.3 25.7 248 185-460 56-345 (349)
171 1elr_A TPR2A-domain of HOP; HO 98.6 4.5E-07 1.5E-11 71.4 11.1 117 386-529 4-129 (131)
172 1ihg_A Cyclophilin 40; ppiase 98.6 2.2E-07 7.6E-12 87.9 10.5 140 351-535 224-364 (370)
173 2xev_A YBGF; tetratricopeptide 98.6 4.9E-07 1.7E-11 71.2 10.7 90 391-480 7-104 (129)
174 3q49_B STIP1 homology and U bo 98.5 8.2E-07 2.8E-11 70.7 10.9 115 347-463 6-127 (137)
175 3k9i_A BH0479 protein; putativ 98.5 1.9E-07 6.4E-12 72.2 6.8 82 399-480 3-89 (117)
176 2hr2_A Hypothetical protein; a 98.5 7E-07 2.4E-11 71.5 9.4 92 390-481 15-131 (159)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.3E-06 4.3E-11 85.5 13.3 130 314-446 267-414 (457)
178 2hr2_A Hypothetical protein; a 98.5 2E-07 6.7E-12 74.7 6.1 103 419-540 12-130 (159)
179 2dba_A Smooth muscle cell asso 98.5 2.7E-06 9.1E-11 68.6 13.0 113 349-464 27-145 (148)
180 2kck_A TPR repeat; tetratricop 98.5 1.7E-06 5.8E-11 65.8 11.0 102 349-452 5-111 (112)
181 2if4_A ATFKBP42; FKBP-like, al 98.4 3E-07 1E-11 86.1 7.7 114 350-480 179-292 (338)
182 3dss_A Geranylgeranyl transfer 98.4 7.9E-05 2.7E-09 68.2 22.9 192 265-461 90-318 (331)
183 1wao_1 Serine/threonine protei 98.4 6.1E-07 2.1E-11 88.1 9.3 120 356-477 12-135 (477)
184 1ihg_A Cyclophilin 40; ppiase 98.4 2.2E-06 7.6E-11 81.0 12.7 139 315-474 223-363 (370)
185 1elr_A TPR2A-domain of HOP; HO 98.4 9.4E-07 3.2E-11 69.5 8.5 110 352-464 6-124 (131)
186 3dss_A Geranylgeranyl transfer 98.4 9.5E-05 3.2E-09 67.7 22.4 179 300-481 90-304 (331)
187 2xev_A YBGF; tetratricopeptide 98.4 6.1E-06 2.1E-10 64.7 12.4 105 354-460 6-118 (129)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 1.2E-06 4E-11 82.0 9.2 148 315-482 179-329 (338)
189 3rkv_A Putative peptidylprolyl 98.3 1.6E-06 5.5E-11 71.4 8.9 79 385-463 62-143 (162)
190 4b4t_Q 26S proteasome regulato 98.3 1E-05 3.6E-10 78.6 15.8 163 318-480 58-244 (434)
191 1na3_A Designed protein CTPR2; 98.3 5.2E-06 1.8E-10 60.4 10.1 83 418-526 9-91 (91)
192 3ro3_A PINS homolog, G-protein 98.3 2.5E-06 8.7E-11 69.8 9.2 129 352-480 11-157 (164)
193 1dce_A Protein (RAB geranylger 98.2 5.3E-05 1.8E-09 75.8 18.7 169 299-470 44-244 (567)
194 3k9i_A BH0479 protein; putativ 98.2 1.3E-06 4.5E-11 67.4 4.5 93 363-455 3-98 (117)
195 4b4t_Q 26S proteasome regulato 98.2 7.1E-05 2.4E-09 72.6 18.0 192 221-412 11-242 (434)
196 2l6j_A TPR repeat-containing p 98.2 9.4E-07 3.2E-11 67.3 3.4 93 385-477 3-103 (111)
197 3n71_A Histone lysine methyltr 98.2 2.1E-05 7.1E-10 76.8 13.3 123 359-481 318-464 (490)
198 3n71_A Histone lysine methyltr 98.1 5.6E-06 1.9E-10 80.8 8.9 125 394-536 317-459 (490)
199 3ro3_A PINS homolog, G-protein 98.1 1.3E-05 4.5E-10 65.4 9.7 131 318-448 12-159 (164)
200 1zu2_A Mitochondrial import re 98.1 3.4E-06 1.2E-10 67.4 5.2 82 400-481 16-120 (158)
201 3ma5_A Tetratricopeptide repea 98.1 2.2E-05 7.5E-10 58.4 9.0 65 417-481 6-70 (100)
202 1na3_A Designed protein CTPR2; 98.0 2.5E-05 8.6E-10 56.6 9.1 82 385-466 8-91 (91)
203 2kat_A Uncharacterized protein 98.0 3.3E-05 1.1E-09 59.1 9.4 77 405-481 4-82 (115)
204 2kat_A Uncharacterized protein 98.0 4.9E-06 1.7E-10 63.9 4.6 78 436-539 3-80 (115)
205 1zu2_A Mitochondrial import re 98.0 1.5E-06 5.1E-11 69.5 1.4 86 429-540 13-119 (158)
206 3bee_A Putative YFRE protein; 97.8 0.00017 5.9E-09 52.3 9.0 68 416-483 4-74 (93)
207 2kc7_A BFR218_protein; tetratr 97.8 0.00015 5.1E-09 53.5 8.9 52 428-479 10-62 (99)
208 1klx_A Cysteine rich protein B 97.7 0.00042 1.5E-08 54.8 11.9 90 392-483 31-128 (138)
209 1klx_A Cysteine rich protein B 97.6 0.0012 4.1E-08 52.1 12.6 112 329-449 9-128 (138)
210 3qwp_A SET and MYND domain-con 97.6 0.00053 1.8E-08 65.8 12.3 116 393-526 294-427 (429)
211 3qww_A SET and MYND domain-con 97.5 3.1E-05 1.1E-09 74.2 2.4 92 430-539 310-409 (433)
212 3qww_A SET and MYND domain-con 97.5 0.00035 1.2E-08 66.9 9.4 84 398-481 310-411 (433)
213 3ma5_A Tetratricopeptide repea 97.4 0.00046 1.6E-08 51.0 7.8 64 314-378 6-69 (100)
214 3ly7_A Transcriptional activat 97.4 0.0034 1.2E-07 57.7 14.8 138 313-451 192-343 (372)
215 1wy6_A Hypothetical protein ST 97.4 0.011 3.8E-07 44.6 14.1 140 327-485 19-158 (172)
216 3qwp_A SET and MYND domain-con 97.4 0.00011 3.9E-09 70.5 4.2 97 425-539 294-398 (429)
217 2kc7_A BFR218_protein; tetratr 97.3 0.00044 1.5E-08 50.8 6.4 79 392-478 6-87 (99)
218 1pc2_A Mitochondria fission pr 97.3 0.0017 5.7E-08 51.3 9.3 88 364-453 12-106 (152)
219 3lvg_A Clathrin heavy chain 1; 97.3 3.3E-06 1.1E-10 78.8 -7.1 260 46-335 54-324 (624)
220 1qsa_A Protein (soluble lytic 97.0 0.31 1.1E-05 48.7 27.0 113 330-446 229-347 (618)
221 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0079 2.7E-07 44.6 10.3 73 386-458 5-86 (104)
222 3u64_A Protein TP_0956; tetrat 96.9 0.0034 1.2E-07 55.2 8.6 87 402-488 179-276 (301)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0082 2.8E-07 44.5 9.4 71 348-418 3-79 (104)
224 1pc2_A Mitochondria fission pr 96.8 0.0044 1.5E-07 48.9 8.0 85 331-418 14-104 (152)
225 3ly7_A Transcriptional activat 96.8 0.014 4.7E-07 53.7 12.3 133 347-482 191-340 (372)
226 3bee_A Putative YFRE protein; 96.8 0.0083 2.8E-07 43.3 8.7 69 383-451 3-76 (93)
227 3mkq_A Coatomer beta'-subunit; 96.7 0.097 3.3E-06 55.1 20.1 45 295-341 663-707 (814)
228 1nzn_A CGI-135 protein, fissio 96.3 0.033 1.1E-06 42.1 9.6 90 363-454 14-110 (126)
229 3mkq_B Coatomer subunit alpha; 96.1 0.42 1.4E-05 38.6 17.7 102 294-413 15-116 (177)
230 3mkq_B Coatomer subunit alpha; 96.1 0.35 1.2E-05 39.1 14.8 101 259-376 15-115 (177)
231 1nzn_A CGI-135 protein, fissio 96.0 0.07 2.4E-06 40.4 9.7 89 326-417 12-106 (126)
232 3mkq_A Coatomer beta'-subunit; 95.9 0.085 2.9E-06 55.5 14.2 100 55-179 608-708 (814)
233 3lvg_A Clathrin heavy chain 1; 95.8 3.8E-05 1.3E-09 71.8 -10.4 275 61-376 40-317 (624)
234 1y8m_A FIS1; mitochondria, unk 95.5 0.43 1.5E-05 36.8 12.4 28 424-451 83-110 (144)
235 3ffl_A Anaphase-promoting comp 95.2 0.12 4.3E-06 41.0 8.9 117 353-481 23-151 (167)
236 4gns_B Protein CSD3, chitin bi 95.1 0.13 4.4E-06 52.5 10.9 55 426-480 345-399 (754)
237 3o48_A Mitochondria fission 1 95.0 0.24 8.3E-06 37.6 9.6 65 416-480 38-106 (134)
238 4h7y_A Dual specificity protei 94.9 0.16 5.6E-06 39.4 8.4 106 347-454 10-130 (161)
239 3u64_A Protein TP_0956; tetrat 94.7 0.047 1.6E-06 48.1 6.0 82 366-450 179-272 (301)
240 4ady_A RPN2, 26S proteasome re 94.4 5.7 0.0002 41.5 21.6 27 119-145 232-258 (963)
241 4h7y_A Dual specificity protei 94.3 0.36 1.2E-05 37.6 9.1 97 313-412 11-120 (161)
242 1wy6_A Hypothetical protein ST 94.1 1.4 4.9E-05 33.5 15.1 81 297-379 74-154 (172)
243 1y8m_A FIS1; mitochondria, unk 90.8 3.7 0.00013 31.6 10.5 68 348-416 37-108 (144)
244 2ff4_A Probable regulatory pro 90.7 0.75 2.6E-05 43.2 8.3 67 422-488 175-246 (388)
245 3o48_A Mitochondria fission 1 90.4 1.6 5.5E-05 33.1 8.1 71 384-454 38-114 (134)
246 4b4t_P 26S proteasome regulato 90.3 13 0.00044 35.5 19.0 48 263-310 30-82 (445)
247 3ffl_A Anaphase-promoting comp 90.0 1.8 6.3E-05 34.3 8.5 24 390-413 126-149 (167)
248 4b4t_P 26S proteasome regulato 89.4 14 0.00048 35.3 16.1 186 227-412 29-244 (445)
249 3lpz_A GET4 (YOR164C homolog); 89.3 12 0.00042 33.8 19.6 168 47-241 36-214 (336)
250 2p58_C Putative type III secre 89.2 4.3 0.00015 28.8 8.8 49 194-244 51-99 (116)
251 2wpv_A GET4, UPF0363 protein Y 89.1 12 0.00041 33.5 18.7 169 46-241 33-215 (312)
252 1qsa_A Protein (soluble lytic 89.0 20 0.00068 35.8 33.2 394 32-472 57-470 (618)
253 1v54_E Cytochrome C oxidase po 89.0 2 6.7E-05 30.7 7.0 64 330-395 25-88 (109)
254 3txn_A 26S proteasome regulato 88.9 15 0.00051 34.2 17.3 57 321-377 105-166 (394)
255 2ff4_A Probable regulatory pro 88.2 3 0.0001 39.1 10.4 67 320-387 176-246 (388)
256 3ltj_A Alpharep-4; protein eng 88.0 10 0.00035 31.2 16.6 50 43-92 25-74 (201)
257 3ltm_A Alpha-REP4; protein eng 87.9 11 0.00037 31.4 18.0 17 212-228 155-171 (211)
258 1zbp_A Hypothetical protein VP 87.5 11 0.00039 32.6 12.4 54 324-378 6-59 (273)
259 4fhn_B Nucleoporin NUP120; pro 87.4 11 0.00038 41.2 15.6 162 188-367 817-988 (1139)
260 2uwj_G Type III export protein 87.3 6.1 0.00021 28.0 9.6 88 264-356 21-108 (115)
261 3txn_A 26S proteasome regulato 87.0 19 0.00066 33.5 20.6 288 155-483 22-345 (394)
262 2p58_C Putative type III secre 86.8 6.7 0.00023 27.9 10.3 88 264-356 22-109 (116)
263 4gns_B Protein CSD3, chitin bi 85.7 5.4 0.00019 40.7 11.2 52 324-376 346-397 (754)
264 3ltm_A Alpha-REP4; protein eng 85.3 15 0.00051 30.5 19.4 11 157-167 38-48 (211)
265 3esl_A Checkpoint serine/threo 84.9 9.5 0.00033 31.4 10.2 55 431-485 92-148 (202)
266 2y69_E Cytochrome C oxidase su 84.0 5.1 0.00018 30.3 7.4 64 330-395 68-131 (152)
267 4fhn_B Nucleoporin NUP120; pro 82.6 27 0.00093 38.1 15.9 142 255-404 818-989 (1139)
268 1zbp_A Hypothetical protein VP 82.4 3.5 0.00012 35.7 7.0 50 429-478 8-57 (273)
269 1v54_E Cytochrome C oxidase po 82.0 12 0.0004 26.8 9.4 59 401-459 25-86 (109)
270 4ady_A RPN2, 26S proteasome re 81.2 58 0.002 34.3 27.2 253 191-446 382-657 (963)
271 3ltj_A Alpharep-4; protein eng 80.4 23 0.00077 29.0 18.1 56 287-343 124-179 (201)
272 4a1g_A Mitotic checkpoint seri 79.9 18 0.00063 28.2 9.7 80 403-485 52-134 (152)
273 2y69_E Cytochrome C oxidase su 76.1 23 0.0008 26.9 9.4 48 412-459 82-129 (152)
274 2wpv_A GET4, UPF0363 protein Y 75.5 45 0.0015 29.8 20.6 114 286-410 35-158 (312)
275 3lpz_A GET4 (YOR164C homolog); 75.2 47 0.0016 30.0 20.8 163 190-378 42-215 (336)
276 2wvi_A Mitotic checkpoint seri 74.1 26 0.0009 27.8 9.2 49 437-485 79-129 (164)
277 2uwj_G Type III export protein 73.4 22 0.00075 25.3 8.9 87 26-122 21-107 (115)
278 4b4t_R RPN7, 26S proteasome re 73.1 14 0.00049 35.0 9.1 61 352-412 133-194 (429)
279 3kea_A K1L; tropism, ANK repea 71.5 52 0.0018 28.8 12.3 142 55-207 37-182 (285)
280 4b4t_R RPN7, 26S proteasome re 68.1 27 0.00092 33.1 9.8 95 286-380 133-238 (429)
281 1wdy_A 2-5A-dependent ribonucl 67.0 61 0.0021 27.9 12.2 22 53-74 9-30 (285)
282 1oyz_A Hypothetical protein YI 63.0 75 0.0026 27.5 20.7 48 44-91 35-82 (280)
283 3eu9_A Huntingtin-interacting 57.0 83 0.0028 26.1 11.4 16 57-72 17-32 (240)
284 3esl_A Checkpoint serine/threo 57.0 56 0.0019 26.9 8.2 57 130-186 92-149 (202)
285 4aez_C MAD3, mitotic spindle c 56.8 64 0.0022 27.1 8.7 34 449-482 147-180 (223)
286 2qx5_A Nucleoporin NIC96; mRNA 55.4 1.8E+02 0.006 29.3 14.1 216 256-478 301-564 (661)
287 1wdy_A 2-5A-dependent ribonucl 54.8 1E+02 0.0035 26.4 12.8 115 82-210 7-129 (285)
288 1oyz_A Hypothetical protein YI 54.6 1.1E+02 0.0036 26.5 21.9 11 390-400 210-220 (280)
289 4a1g_A Mitotic checkpoint seri 48.7 90 0.0031 24.3 7.8 49 136-184 84-133 (152)
290 2d2s_A Exocyst complex compone 48.0 83 0.0029 26.7 8.3 23 220-242 24-46 (235)
291 3bqo_A Telomeric repeat-bindin 46.9 99 0.0034 25.2 7.9 41 426-466 125-165 (211)
292 2nsz_A Programmed cell death p 46.6 79 0.0027 23.8 7.2 61 287-347 10-75 (129)
293 3bqo_A Telomeric repeat-bindin 45.3 38 0.0013 27.6 5.3 45 62-106 94-146 (211)
294 2fe3_A Peroxide operon regulat 44.5 40 0.0014 26.0 5.5 36 36-72 12-47 (145)
295 1mzb_A Ferric uptake regulatio 44.1 40 0.0014 25.7 5.3 59 4-62 8-69 (136)
296 4b4t_S RPN3, 26S proteasome re 43.9 1.3E+02 0.0044 29.1 9.7 61 46-106 231-299 (523)
297 2w57_A Ferric uptake regulatio 42.6 46 0.0016 25.9 5.5 59 4-62 7-68 (150)
298 2xig_A Ferric uptake regulatio 41.9 42 0.0014 26.1 5.2 57 35-92 16-76 (150)
299 1ya0_A SMG-7 transcript varian 41.3 98 0.0034 29.9 8.6 55 425-479 159-213 (497)
300 3jxi_A Vanilloid receptor-rela 40.8 84 0.0029 26.7 7.7 117 86-207 11-161 (260)
301 4b4t_S RPN3, 26S proteasome re 40.5 1.1E+02 0.0037 29.6 8.6 62 351-412 232-296 (523)
302 4gq2_M Nucleoporin NUP120; bet 40.3 2.3E+02 0.0077 30.2 12.0 85 356-446 816-925 (950)
303 2ion_A PDCD4, programmed cell 39.4 70 0.0024 25.0 6.0 61 287-347 12-77 (152)
304 2fu4_A Ferric uptake regulatio 39.0 60 0.002 21.8 5.1 59 3-62 6-68 (83)
305 3b7b_A Euchromatic histone-lys 38.9 1.6E+02 0.0056 24.2 9.6 40 33-73 26-68 (237)
306 3eu9_A Huntingtin-interacting 38.2 1.6E+02 0.0056 24.1 9.1 43 32-74 23-67 (240)
307 4ets_A Ferric uptake regulatio 37.9 57 0.0019 25.8 5.4 62 31-93 18-85 (162)
308 2d2s_A Exocyst complex compone 37.5 94 0.0032 26.4 7.0 87 83-177 24-116 (235)
309 1n11_A Ankyrin; clathrin, BAND 37.4 2.6E+02 0.0087 26.0 14.2 311 33-373 29-364 (437)
310 3hra_A Ankyrin repeat family p 37.3 1.6E+02 0.0054 23.5 9.7 15 234-248 158-172 (201)
311 4gq2_M Nucleoporin NUP120; bet 36.5 2.9E+02 0.01 29.3 12.2 127 189-329 816-950 (950)
312 3eyy_A Putative iron uptake re 36.3 52 0.0018 25.4 4.9 57 4-61 9-67 (145)
313 2r9g_A AAA ATPase, central reg 33.0 2E+02 0.0069 23.5 9.3 64 217-281 14-85 (204)
314 3kea_A K1L; tropism, ANK repea 30.1 2E+02 0.0068 24.9 8.4 55 394-448 134-188 (285)
315 3bge_A Predicted ATPase; struc 29.5 2.3E+02 0.0079 23.1 7.9 46 218-263 8-56 (201)
316 4ets_A Ferric uptake regulatio 29.1 1.6E+02 0.0056 23.1 6.8 70 93-168 13-85 (162)
317 3mv2_A Coatomer subunit alpha; 29.1 3.1E+02 0.011 24.5 12.2 61 408-482 195-257 (325)
318 3ygs_P Procaspase 9; apoptosis 28.5 84 0.0029 22.2 4.5 38 298-335 51-88 (97)
319 4aez_C MAD3, mitotic spindle c 27.9 2.2E+02 0.0076 23.8 7.5 55 94-152 131-185 (223)
320 3ctd_A Putative ATPase, AAA fa 27.5 2.6E+02 0.009 23.1 8.4 67 215-281 33-107 (213)
321 3mkr_B Coatomer subunit alpha; 27.4 3.3E+02 0.011 24.3 9.2 61 408-482 186-248 (320)
322 3ygs_P Procaspase 9; apoptosis 27.2 97 0.0033 21.8 4.6 36 167-202 52-87 (97)
323 1bpo_A Protein (clathrin); cla 26.6 4.2E+02 0.014 25.2 11.1 25 286-310 363-387 (494)
324 1ug3_A EIF4GI, eukaryotic prot 26.5 3E+02 0.01 24.8 9.0 26 156-181 15-40 (339)
325 2pnn_A Transient receptor pote 26.3 2.5E+02 0.0085 23.8 8.4 100 78-179 12-125 (273)
326 1bpo_A Protein (clathrin); cla 26.2 4.3E+02 0.015 25.1 9.8 46 329-377 343-388 (494)
327 1n11_A Ankyrin; clathrin, BAND 26.0 3.9E+02 0.013 24.6 10.7 361 82-481 16-402 (437)
328 2cfu_A SDSA1; SDS-hydrolase, l 25.7 1.5E+02 0.005 29.9 7.3 63 402-467 436-498 (658)
329 1k1a_A B-cell lymphoma 3-encod 25.2 2.8E+02 0.0097 22.7 10.8 180 83-273 12-204 (241)
330 1oai_A Nuclear RNA export fact 25.1 60 0.0021 20.4 2.8 24 363-386 33-56 (59)
331 2ion_A PDCD4, programmed cell 24.7 2.5E+02 0.0084 21.8 7.9 61 187-247 13-78 (152)
332 3ljn_A Hypothetical protein; a 24.6 3.8E+02 0.013 24.0 10.8 210 50-274 21-266 (364)
333 2fe3_A Peroxide operon regulat 23.7 1.9E+02 0.0066 22.0 6.2 61 239-300 12-72 (145)
334 3hra_A Ankyrin repeat family p 23.1 2.3E+02 0.0079 22.4 7.2 19 56-74 46-64 (201)
335 2w57_A Ferric uptake regulatio 23.0 2.5E+02 0.0086 21.5 6.8 61 102-168 7-68 (150)
336 1mzb_A Ferric uptake regulatio 22.8 2.4E+02 0.0081 21.2 6.5 59 103-167 9-68 (136)
337 2ko4_A Mediator of RNA polymer 22.7 1.5E+02 0.0051 19.9 4.3 37 67-103 24-62 (81)
338 2xig_A Ferric uptake regulatio 22.7 2.6E+02 0.009 21.4 7.6 61 102-168 17-77 (150)
339 3jxi_A Vanilloid receptor-rela 22.3 76 0.0026 27.0 4.1 54 124-177 9-71 (260)
340 2o03_A Probable zinc uptake re 21.8 1.6E+02 0.0055 22.0 5.3 45 123-167 16-60 (131)
341 3qil_A Clathrin heavy chain 1; 21.6 16 0.00056 27.0 -0.4 70 56-138 16-85 (125)
342 3mwm_A ZUR, putative metal upt 21.6 1.5E+02 0.0053 22.4 5.2 46 122-167 18-63 (139)
343 3aji_A 26S proteasome non-ATPa 21.5 3.3E+02 0.011 22.1 8.9 179 81-273 7-193 (231)
344 2f6m_A Suppressor protein STP2 20.8 1.3E+02 0.0045 19.4 3.7 44 318-362 5-48 (65)
345 2b7e_A PRE-mRNA processing pro 20.7 78 0.0027 19.9 2.6 30 93-127 2-31 (59)
346 2ijq_A Hypothetical protein; s 20.6 2.8E+02 0.0095 21.8 6.4 62 79-146 35-104 (161)
347 2wvi_A Mitotic checkpoint seri 20.2 3.2E+02 0.011 21.5 9.7 57 94-154 77-133 (164)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-41 Score=345.31 Aligned_cols=443 Identities=12% Similarity=0.024 Sum_probs=393.8
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
+++..++.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|..+|+.+... +++..+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-------NRSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-------GTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-------ccchhHHH
Confidence 5778899999999999999999999999864 78889999999999999999999999998754 78889999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHh---------------CCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CC-h
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKF---------------GLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--RD-I 183 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~ 183 (541)
.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++.+ |+ .
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 9999999999999999999853211 2234578999999999999999999999999865 32 2
Q ss_pred hhHHH--------------------------------------HHHHHHhcCCHHHHHHHHhcCCC--CCcchHHHHHHH
Q 048358 184 VAWNN--------------------------------------LISGYARLGQMKKARMLFDKMPY--TTIVSWTAMISG 223 (541)
Q Consensus 184 ~~~~~--------------------------------------l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~ 223 (541)
..+.. ++..|.+.|++++|.++|+++.. +++.+|+.++.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 23332 24556678999999999999987 788999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999875 4577889999999999999999999999998664 56788999999999999999999
Q ss_pred HHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 304 SQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998843 467899999999999999999999999999876 6688999999999999999999999999998753
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 381 HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++.+.+|++
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 567889999999999999999999999988 44787 7899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 452 TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
+.+|..++.+|.+.|++++|.+.++++.+ ++|+++.++..|+++|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLA--------------------------ISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999876 468889999999988753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-40 Score=340.96 Aligned_cols=444 Identities=11% Similarity=0.032 Sum_probs=376.7
Q ss_pred HHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCch
Q 048358 55 VCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPS 134 (541)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 134 (541)
.+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------TGNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHTTCHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------CCCchHHHHHHHHHHHcCcHH
Confidence 3566788888899999888889999999999999999999999999999864 678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC-------------------ChhhHHHHHHHHHh
Q 048358 135 LGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR-------------------DIVAWNNLISGYAR 195 (541)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~ 195 (541)
.|..+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999988653 678899999999999999999999999965443 37899999999999
Q ss_pred cCCHHHHHHHHhcCCCCC---cchHHHH--------------------------------------HHHHHhcCChHHHH
Q 048358 196 LGQMKKARMLFDKMPYTT---IVSWTAM--------------------------------------ISGYTHIGSYAEAL 234 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~~~---~~~~~~l--------------------------------------~~~~~~~g~~~~A~ 234 (541)
.|++++|.+.|+++...+ ...+..+ +..|.+.|++++|.
T Consensus 213 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999999986322 2333322 45566789999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--
Q 048358 235 DVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-- 312 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 312 (541)
++|+++.+. +++..++..++..+.+.|++++|..+|+.+.+.+ +.+..++..++.+|.+.|++++|..+++++.+
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 999999865 6899999999999999999999999999999876 34788899999999999999999999998843
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHH
Q 048358 313 -RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGC 391 (541)
Q Consensus 313 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 391 (541)
.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+. .+.+..+|..
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 446 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLF 446 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 478899999999999999999999999998864 556889999999999999999999999999874 3567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc------CCCC-cchHHHHHHHH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL------EPED-TGNYVLLSNIY 462 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~ 462 (541)
++.+|.+.|++++|.++|+++ ... .+..+|..++..|.+.|++++|++.|+++.+. +|++ ..+|..++.+|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999998 333 46899999999999999999999999999987 4443 67899999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.+.|++++|.++++++.+. +|++..++..|+.+|...|+.++|.+.+++++
T Consensus 527 ~~~g~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLL--------------------------STNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999998763 47888999999999999999999999888765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=6.7e-29 Score=240.65 Aligned_cols=372 Identities=12% Similarity=0.066 Sum_probs=295.1
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 048358 84 IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163 (541)
Q Consensus 84 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 163 (541)
...+.+.|++++|...++.+.+.. |.+...+..+...+...|+++.|...++..++.. +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 344566777777777777766653 3444555566666667777777777777776654 445667777777777
Q ss_pred cCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHH
Q 048358 164 KCDELIEAHKVFEEMTD--R-DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVF 237 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 237 (541)
+.|++++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++. +.+...+..+...+...|++++|.+.|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777777776653 3 34467777777777777777777776654 234456777888888889999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CC
Q 048358 238 RQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RD 314 (541)
Q Consensus 238 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 314 (541)
+++.... +.+..++..+...+...|+++.|...++.+.+.+ +.+...+..+...+...|++++|...|++... .+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 8888763 3356778888888889999999999998888875 34577888899999999999999999987733 35
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
..++..+...|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHH
Confidence 7788999999999999999999999999875 556788999999999999999999999999875 3677888999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+.+.|++++|.+.++++ ...| +..++..+..++.+.|++++|+..++++++..|.++.+|..++.++...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999987 5556 578899999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=9.1e-29 Score=239.70 Aligned_cols=373 Identities=14% Similarity=0.072 Sum_probs=327.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH
Q 048358 123 VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQM 199 (541)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 199 (541)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3556778899999999999998875 44566777888899999999999999988764 4667999999999999999
Q ss_pred HHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048358 200 KKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCD 276 (541)
Q Consensus 200 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 276 (541)
++|.+.|+++. +.++.+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999875 3355689999999999999999999999999763 3344566677888899999999999999999
Q ss_pred HhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 048358 277 KNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF 353 (541)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 353 (541)
+.. +.+..+|..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...|++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 44578899999999999999999999999843 356788999999999999999999999998865 5567889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhc
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTY 431 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~ 431 (541)
..+..++...|++++|+..|+++.+. .+.+..+|..+...+.+.|++++|.+.|+++ ... ++..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999874 3556788999999999999999999999998 333 4788999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCCh
Q 048358 432 SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFL 511 (541)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 511 (541)
|++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+ .+|+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~ 372 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999875 46888
Q ss_pred hHHHHHHHHHHHHHhc
Q 048358 512 KDIFWLLELLALHQDR 527 (541)
Q Consensus 512 ~~~~~~l~~~~~~~~~ 527 (541)
..++..++.++..+|+
T Consensus 373 ~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHhHHHHHHHccC
Confidence 9999999999988763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.3e-28 Score=237.61 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=166.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC---------hHHHHHHHHHHHHhCCCccHh
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGS---------LELGEWIHMYCDKNHLLRRTV 285 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 285 (541)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcc----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQM----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
+|+++|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999988 457999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
+.|++++|.++|++|... +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 999999999999999875 889999999999988875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.2e-26 Score=228.53 Aligned_cols=200 Identities=10% Similarity=0.116 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCC---------H
Q 048358 231 AEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGC---------I 300 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 300 (541)
..+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766544 46888999999999999999999999999999999999999999987765 6
Q ss_pred HHHHHHHHcc----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 301 NQASQLFDQM----VERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 301 ~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999 558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhc
Q 048358 377 KRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM---PMKPDAKIWGSLLSSCRTY 431 (541)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 431 (541)
.+. |+.|+..+|+.|+.+|++.|+.++|.++|++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 975 99999999999999999999999999999999 7899999999999987653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.9e-25 Score=221.81 Aligned_cols=424 Identities=10% Similarity=-0.025 Sum_probs=313.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFV 123 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~l 123 (541)
...+......+.+.|++++|...|+++.+ |+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------hHHHHHHHHH
Confidence 34556667777788888888888887764 777778888888888888888888888887764 5556777778
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC----CChhhHHHH---HHHHHhc
Q 048358 124 IKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD----RDIVAWNNL---ISGYARL 196 (541)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~ 196 (541)
..++...|++++|...++.+.+.+. ++......++..+........+.+.+..+.. ++...+... .......
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 8888888888888888888877653 3444444444444443333333333322211 000000000 0000111
Q ss_pred CCHHHHHHHHhcCC---------CC-CcchHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------ChH
Q 048358 197 GQMKKARMLFDKMP---------YT-TIVSWTAMISGYTH---IGSYAEALDVFRQMQM-----VGIEP--------DEI 250 (541)
Q Consensus 197 ~~~~~A~~~~~~~~---------~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~ 250 (541)
.....+...+.... .+ +...+......+.. .|++++|...|+++.+ ..-.| +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11111222222221 11 23445555555554 8999999999999987 32122 345
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHh
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLAN 327 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 327 (541)
++..+...+...|+++.|...++.+.+.... ..++..++.+|...|++++|...++.+.+ .+..++..+...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 6777888899999999999999999988654 88899999999999999999999998844 367789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|..
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999875 5567889999999999999999999999998753 5567788999999999999999999
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 048358 408 IIEEM----PMKPD----AKIWGSLLSSCRT---YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 408 ~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
.++++ +..++ ...+..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99987 22222 4488889999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 048358 477 LIRSK 481 (541)
Q Consensus 477 ~m~~~ 481 (541)
++.+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.8e-25 Score=219.63 Aligned_cols=427 Identities=11% Similarity=-0.028 Sum_probs=321.6
Q ss_pred HHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHH
Q 048358 20 ILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLA 96 (541)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A 96 (541)
.+...+..+.+...++.+++.. |++.++..+..+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344577888889999998876 7899999999999999999999999998764 4556889999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHH---HHHHcCCChHHHHH
Q 048358 97 INLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALL---DLYGKCDELIEAHK 173 (541)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~g~~~~A~~ 173 (541)
...|+.+...+ +++......++..+........+.+.+..+...+..|+......-. ...........+..
T Consensus 93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 93 MFDLSVLSLNG------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp HHHHHHHHHSS------SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred HHHHHHHHhcC------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999886 5666666666666555544444444444443332222221111111 11111111222222
Q ss_pred HHhhcCC---------C-ChhhHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-CcchHHHHHHH
Q 048358 174 VFEEMTD---------R-DIVAWNNLISGYAR---LGQMKKARMLFDKMPY----------------T-TIVSWTAMISG 223 (541)
Q Consensus 174 ~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~ 223 (541)
.+..... | +...+......+.. .|++++|...|+++.. + +..++..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222211 1 13344444554554 8889999998887643 1 24578888999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH
Q 048358 224 YTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA 303 (541)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 303 (541)
+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998874 447788889999999999999999999998765 34577899999999999999999
Q ss_pred HHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 304 SQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 304 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999998733 367789999999999999999999999998864 5567888999999999999999999999998743
Q ss_pred CCCCc----HhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 381 HIEHK----IEHYGCLVDLLGR---AGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 381 ~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.-.++ ...+..+...+.. .|++++|.+.++++ ...| +..++..+...+...|++++|...++++++..|.+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 22222 3378999999999 99999999999987 3344 57888899999999999999999999999999998
Q ss_pred cchHHHH
Q 048358 452 TGNYVLL 458 (541)
Q Consensus 452 ~~~~~~l 458 (541)
+..+..+
T Consensus 483 ~~~~~~~ 489 (514)
T 2gw1_A 483 EEKLQAI 489 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5.5e-24 Score=215.44 Aligned_cols=420 Identities=10% Similarity=0.030 Sum_probs=329.9
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
....+..+...+.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++.+.+ +.+..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~ 97 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK------PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CchHHHHH
Confidence 345677788889999999999999998764 467788889999999999999999999998876 66778889
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCC------ChhhHHHHHHHHHh
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDR------DIVAWNNLISGYAR 195 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~ 195 (541)
.+..++...|++++|...++ ..... |+. ....+..+...+....|...++.+... ........+..+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 99999999999999999996 43322 222 122344555556667888888888652 22233455666777
Q ss_pred cCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCh--------HHHHHHH
Q 048358 196 LGQMKKARMLFDKMPYTTIV---SWTAMISGYTHI--------GSYAEALDVFRQMQMVGIEPDE--------ISIVSVL 256 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~--------~~~~~ll 256 (541)
..+.+.+...+......+.. ....+...+... |++++|..+|+++.+. .|+. .++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTG 250 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHH
Confidence 78888888888777765543 344444443332 4789999999999865 4442 2466666
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH
Q 048358 257 PACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK 333 (541)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 333 (541)
..+...|+++.|...+..+.+... +..++..+...|...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 778889999999999999998753 477889999999999999999999998843 467789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999998875 5567889999999999999999999999998853 556778899999999999999999999986
Q ss_pred C-------CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 413 P-------MKPDAKIWGSLLSSCRTY----------SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 413 ~-------~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
. .......+......+... |++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 111233345555667777 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCC
Q 048358 476 KLIRSKS 482 (541)
Q Consensus 476 ~~m~~~~ 482 (541)
++..+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9987753
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3e-25 Score=224.72 Aligned_cols=424 Identities=9% Similarity=0.012 Sum_probs=329.1
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH
Q 048358 77 VFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN 156 (541)
Q Consensus 77 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (541)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|.+.++.+++.+ +.+..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 97 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHH
Confidence 4567788889999999999999999999876 6788899999999999999999999999999986 44778889
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCCh
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYT------TIVSWTAMISGYTHIGSY 230 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~ 230 (541)
.+..++...|++++|...|+.+.. +.......+..+...+...+|...++.+... ........+..+....+.
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999999975532 2222233344556666678888888877542 122344555666777777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHH-HHHc--------cCChHHHHHHHHHHHHhCCCcc------HhHHHHHHHHHH
Q 048358 231 AEALDVFRQMQMVGIEPDEISIVSVLP-ACAQ--------LGSLELGEWIHMYCDKNHLLRR------TVICNALIEMYI 295 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~ 295 (541)
+.+...+...... .+....+...+. .+.. .|+++.|..+++.+.+...... ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 7776665554322 333222322222 2222 2478889999998887653321 235777788899
Q ss_pred hcCCHHHHHHHHHccC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 296 KCGCINQASQLFDQMV--ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
..|++++|...|+++. .|+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999883 3567788889999999999999999999998875 567888999999999999999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|.+
T Consensus 334 ~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998753 455678899999999999999999999988 3344 56788888999999999999999999999887665
Q ss_pred cch------HHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHH
Q 048358 452 TGN------YVLLSNIYAKH----------GRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIF 515 (541)
Q Consensus 452 ~~~------~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 515 (541)
... +..++.++.+. |++++|...++++.+ .+|++..++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------~~p~~~~~~ 465 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--------------------------LDPRSEQAK 465 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--------------------------HCTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--------------------------hCCCCHHHH
Confidence 544 44556788888 999999999999875 368888999
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048358 516 WLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 516 ~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++.+|..+|+.++|.+.+++++
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999888765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.8e-23 Score=206.60 Aligned_cols=362 Identities=11% Similarity=0.057 Sum_probs=252.8
Q ss_pred chhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHH
Q 048358 151 HSITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGY 224 (541)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 224 (541)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++. +.+..+|..++.+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444555555555555555555554432 234455555555555555555555555443 23455677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh----HHHHHH------------HHHHHccCChHHHHHHHHHHHHhCCCccHhHHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIEPDE----ISIVSV------------LPACAQLGSLELGEWIHMYCDKNHLLRRTVICN 288 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (541)
...|++++|...|+++... .|+. ..+..+ ...+...|+++.|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777754 3433 333333 344777888888888888888764 44677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL--------- 356 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------- 356 (541)
.++.+|...|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++.... +.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 899999999999999999988743 467889999999999999999999999998754 3344444444
Q ss_pred ---HHHHhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 048358 357 ---LSACAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCR 429 (541)
Q Consensus 357 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 429 (541)
...|...|++++|...|+.+.+...-.+. ...|..+...+.+.|++++|+..++++ ...| +..+|..+..+|.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78899999999999999999875311111 457888999999999999999999987 4455 6889999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHH------------HHhcC-----CHHHHHHHHHH-hhhCCCccCCceeE
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI------------YAKHG-----RWEDVSRMRKL-IRSKSMKKTPGCSL 491 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-m~~~~~~~~~~~~~ 491 (541)
..|++++|...++++++..|.++..+..++.+ |...| +.+++.+.+++ .....+...+.-
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-- 418 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-- 418 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH--
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc--
Confidence 99999999999999999999999999998844 44444 45666776665 332221110000
Q ss_pred EEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCc
Q 048358 492 IEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVI 532 (541)
Q Consensus 492 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 532 (541)
...+.....+..++..|+.+++.+...
T Consensus 419 --------------~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 419 --------------EEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred --------------hHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 000113456778888999888776543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.6e-23 Score=203.74 Aligned_cols=316 Identities=14% Similarity=0.084 Sum_probs=272.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
+...+..+...+.+.|++++|...|+++. +.+..+|..++.++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 45688899999999999999999999875 3467899999999999999999999999999875 4567788899999
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccH---hHHHHH------------HHHHHhcCCHHHHHHHHHccCC---CChhHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRT---VICNAL------------IEMYIKCGCINQASQLFDQMVE---RDVVSWST 320 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 320 (541)
+...|+++.|...++.+.+... .+. ..+..+ ...+...|++++|...|+++.+ .+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999988653 233 455555 4558999999999999998843 47788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHH--------
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCL-------- 392 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 392 (541)
++.+|...|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+.+.... +.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865 6678899999999999999999999999998753 4445555555
Q ss_pred ----HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 393 ----VDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 393 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
...+.+.|++++|...|+++ ...|+ ...+..+...+.+.|++++|+..++++++..|+++.+|..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999998 44554 457888889999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
...|++++|...++++.+ ++|+++.++..|+.+...+++.
T Consensus 340 ~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQE--------------------------HNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT--------------------------TSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHhhcc
Confidence 999999999999999876 4688888888888776666543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=4.3e-21 Score=183.26 Aligned_cols=324 Identities=15% Similarity=0.100 Sum_probs=230.3
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHH
Q 048358 152 SITENALLDLYGKCDELIEAHKVFEEMTD---RDIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYT 225 (541)
Q Consensus 152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 225 (541)
+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++. +.+...|..+..++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44556666667777777777777766543 234455555555555666666655555543 123345555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---Ch-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 226 HIGSYAEALDVFRQMQMVGIEP---DE-ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
..|++++|...|+++.+. .| +. ..+..+.... ....+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHH
Confidence 556666666555555543 23 11 1111110000 0111223467788889999
Q ss_pred HHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 302 QASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 302 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
+|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99988888733 466788888888999999999999999988875 66778888888899999999999999998887
Q ss_pred hcCCCCcHhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHhhcCCHHHHHHH
Q 048358 379 DHHIEHKIEHYG------------CLVDLLGRAGRLDQALNIIEEM-PMKPD-A----KIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 379 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|+..
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 53 33333333 3366789999999999999987 33444 2 2355577789999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL 520 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 520 (541)
++++++..|+++.++..++.+|.+.|++++|.+.++++.+ .+|++..++..|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999875 46889999999999
Q ss_pred HHHHHhccc
Q 048358 521 LALHQDRAK 529 (541)
Q Consensus 521 ~~~~~~~~~ 529 (541)
++..+++.+
T Consensus 349 ~~~~~~~~~ 357 (359)
T 3ieg_A 349 AQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 998887643
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.2e-20 Score=174.75 Aligned_cols=322 Identities=9% Similarity=-0.029 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--C-ChhhHHHHHHH
Q 048358 116 DKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD--R-DIVAWNNLISG 192 (541)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 192 (541)
+...+..+...+...|+++.|...++.+++.. +.+..++..+..++...|++++|...|+++.+ | +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567788889999999999999999999976 44678899999999999999999999999865 3 66789999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChH
Q 048358 193 YARLGQMKKARMLFDKMPYTTI------VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLE 266 (541)
Q Consensus 193 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 266 (541)
+...|++++|...|++....++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998864333 33333311100 011222233344445555
Q ss_pred HHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 267 LGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
.|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+..++..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544433 23455666677777777777777777766633 3556677777777777888888888877776
Q ss_pred CCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH----hHHHHHHHHHHhcCCHHHHHH
Q 048358 344 LKVPPNDITFI------------GLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI----EHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 344 ~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.. +.+...+. .+...+...|++++|...++.+.+.. +.+. ..+..+...+...|++++|.+
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 53 33333332 33666888999999999999998753 2233 335567889999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 408 IIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 408 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+++. ...| +..++..+...+...|++++|...++++++.+|+++..+..+..+....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99988 4445 6788999999999999999999999999999999999888888776544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=7.8e-20 Score=172.42 Aligned_cols=285 Identities=9% Similarity=-0.013 Sum_probs=236.9
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHH
Q 048358 212 TTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALI 291 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (541)
.++..+..++..+...|++++|.++|+++.... +.+...+..++..+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455677777888888888888888888887764 3445556667777788888888888888888764 34567788889
Q ss_pred HHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 292 EMYIKCG-CINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 292 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 89999999988744 356788899999999999999999999998865 455677788889999999999
Q ss_pred HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHhhcCCHHH
Q 048358 368 EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM----------KPDAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~ 436 (541)
+|...++.+.+. .+.+...+..+...+...|++++|...+++. .. .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999874 3566788899999999999999999998876 11 2345788899999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFW 516 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 516 (541)
|+..++++++..|.++.++..++.+|.+.|++++|.+.++++.+ .+|++..++.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~ 308 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--------------------------LRRDDTFSVT 308 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--------------------------TCSCCHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--------------------------cCCCchHHHH
Confidence 99999999999999999999999999999999999999998754 5788899999
Q ss_pred HHHHHHHHHhc
Q 048358 517 LLELLALHQDR 527 (541)
Q Consensus 517 ~l~~~~~~~~~ 527 (541)
.++..+.....
T Consensus 309 ~l~~~~~~~~g 319 (330)
T 3hym_B 309 MLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHhC
Confidence 99998854433
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=5.1e-20 Score=176.67 Aligned_cols=296 Identities=14% Similarity=0.057 Sum_probs=198.7
Q ss_pred hcCCHHHHHH-HHhcCCC---C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChH
Q 048358 195 RLGQMKKARM-LFDKMPY---T----TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLE 266 (541)
Q Consensus 195 ~~~~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 266 (541)
-.|++++|.+ .|++... . +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666766 6664431 1 23456666677777777777777777776553 233344444444445555555
Q ss_pred HHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 048358 267 LGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV 346 (541)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 346 (541)
.|...++.+.+.. + .+..++..+...|...|++++|...++++....
T Consensus 116 ~A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (368)
T 1fch_A 116 LAISALRRCLELK-P-------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT- 162 (368)
T ss_dssp HHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHhcC-C-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5555554444433 1 234455555555555555666666655555543
Q ss_pred CCCHHHHHH---------------HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048358 347 PPNDITFIG---------------LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEE 411 (541)
Q Consensus 347 ~p~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 411 (541)
+.+...+.. .+..+...|++++|...|+.+.+.....++..++..+...|.+.|++++|...|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112211110 23333378999999999999987542222578899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCce
Q 048358 412 M-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGC 489 (541)
Q Consensus 412 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 489 (541)
+ ...| +..++..+...+...|++++|+..++++++..|.++.++..++.+|.+.|++++|...++++........ +.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 321 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR-GP 321 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-Cc
Confidence 7 4445 5788999999999999999999999999999999999999999999999999999999999876432110 00
Q ss_pred eEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 490 SLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..+.+|....++..|+.+|..+|+.++|.....+++
T Consensus 322 --------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 --------------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -----------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred --------------cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 012467789999999999999999999988877654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.2e-18 Score=164.35 Aligned_cols=290 Identities=11% Similarity=0.029 Sum_probs=206.4
Q ss_pred CCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 048358 149 KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIG 228 (541)
Q Consensus 149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 228 (541)
+.+...+..+...+...|++++|.++|+++.+. .+.+...+..++.++...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----------------------------DPFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------------CCCChhhHHHHHHHHHHhh
Confidence 344455555666666666666666666554321 1223344555556666666
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHH
Q 048358 229 SYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLF 307 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 307 (541)
++++|...++++.+.. +.+...+..+...+...| +++.|...++.+.+.. +.+...+..+...|...|++++|...|
T Consensus 71 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 71 KANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp CHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666666542 334455556666666666 6666666666666543 234556777778888888888888888
Q ss_pred HccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC---
Q 048358 308 DQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHH--- 381 (541)
Q Consensus 308 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 381 (541)
+++.+ .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 77633 345667778888888899999999998888875 56677888888888899999999999888876321
Q ss_pred ----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 382 ----IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 382 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
.+.....+..+...|...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++..|+++..+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 1344567889999999999999999999887 3334 567888899999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCHH
Q 048358 456 VLLSNIYA-KHGRWE 469 (541)
Q Consensus 456 ~~l~~~~~-~~g~~~ 469 (541)
..++.++. ..|+.+
T Consensus 308 ~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 308 TMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhCchh
Confidence 99999884 556543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.7e-17 Score=165.40 Aligned_cols=365 Identities=10% Similarity=-0.030 Sum_probs=255.5
Q ss_pred CcchHHHHHHHHHc----CCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc----cCCchHHHHHHHHHHHhC
Q 048358 76 NVFLYNAMIRAYTN----NHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG----LLCPSLGKQIHAHVCKFG 147 (541)
Q Consensus 76 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 147 (541)
++..+..+...|.. .+++++|+..|+...+.| +...+..+...+.. .++++.|...++...+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444444 455555555555555432 23344445555554 555566666665555543
Q ss_pred CCCchhhHHHHHHHHHc----CCChHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCcchH
Q 048358 148 LKSHSITENALLDLYGK----CDELIEAHKVFEEMTD-RDIVAWNNLISGYAR----LGQMKKARMLFDKMP-YTTIVSW 217 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~ 217 (541)
+...+..|...|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|.+.|++.. ..++.++
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33444445555555 5566666666655443 234455555555554 556666666666543 2356677
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHHH
Q 048358 218 TAMISGYTH----IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICNA 289 (541)
Q Consensus 218 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (541)
..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777777877 788888888888888764 44566666666664 778889998888887765 4556777
Q ss_pred HHHHHHh----cCCHHHHHHHHHccCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 290 LIEMYIK----CGCINQASQLFDQMVE-RDVVSWSTVIGGLANH-----GKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 290 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+...|.. .++.++|...|+...+ .++..+..+...|... +++++|..+|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 8888887 8899999999998855 4677888888888887 89999999999999876 44566777777
Q ss_pred HhccC---cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--
Q 048358 360 CAHTG---FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT-- 430 (541)
Q Consensus 360 ~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 430 (541)
|...| ++++|++.|++..+. .+...+..+...|.. .+++++|.++|++.-...+...+..+...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 77656 889999999999874 466778889999988 89999999999988323467788888888887
Q ss_pred --cCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 048358 431 --YSNLEIAVIAMEHLLVLEPE---DTGNYVLLSNIYAK 464 (541)
Q Consensus 431 --~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 464 (541)
.+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999998844 67777777766554
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=8e-17 Score=168.23 Aligned_cols=396 Identities=14% Similarity=0.112 Sum_probs=305.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhH
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITE 155 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (541)
++.--...+.+|...|.+.+|++++++....+- ...-+...-+.++.+..+. +..+..+....... ...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s---~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC---cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccH
Confidence 444445678899999999999999999984320 0013345556677666666 55555555544432 123
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALD 235 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 235 (541)
..+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. ++.+|..+..++...|++++|++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 4478889999999999999999752 222223333 27789999999999874 46789999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 048358 236 VFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDV 315 (541)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 315 (541)
.|.+. -|...|..++.+|.+.|+++++.+++....+.. +++...+.++.+|++.+++++...+. ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 99764 567788899999999999999999999888765 33333445999999999999755553 45567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
..|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.. +..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 77888999999999999999999984 479999999999999999999999773 45889999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc--CCHHHHHH
Q 048358 396 LGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH--GRWEDVSR 473 (541)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~ 473 (541)
|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+.+++.+...|..|+.+|.+- ++..++.+
T Consensus 1260 cve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999877543 45666678999999999999999999999999999999999999988875 45555665
Q ss_pred HHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 474 MRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
+|..-. ++++.. ...+....|..+.-+|.+-++.+.|+..|.+.
T Consensus 1338 ~f~~ri--ni~k~~-------------------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1338 LFWSRV--NIPKVL-------------------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHhc--ccchHh-------------------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 554321 111100 01255677888999999999999888666543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=3.1e-19 Score=171.13 Aligned_cols=297 Identities=11% Similarity=0.024 Sum_probs=225.7
Q ss_pred HHHcCCChHHHHH-HHhhcCC--C-----ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC
Q 048358 161 LYGKCDELIEAHK-VFEEMTD--R-----DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGS 229 (541)
Q Consensus 161 ~~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 229 (541)
++...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++. +.+..+|..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445689999998 8887654 1 35678899999999999999999999875 3466789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQ 309 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 309 (541)
+++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+..... ...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-------hh-------
Confidence 999999999999875 5577888888999999999999999999988865332 2222111100 00
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHh
Q 048358 310 MVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIE 387 (541)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 387 (541)
...+ ...+..+...+ ..|++++|...|+++.+.. +. +..++..+...+...|++++|+..|+++.... +.+..
T Consensus 178 ~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 252 (368)
T 1fch_A 178 GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYL 252 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHH
Confidence 0000 01111222333 7889999999999998864 33 57888899999999999999999999998753 55678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-----------cch
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-----------TGN 454 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~ 454 (541)
.|..+...+...|++++|...|+++ ...| +..++..+..++.+.|++++|...++++++..|.+ ..+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 8999999999999999999999987 4445 57889999999999999999999999999988877 789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
|..++.+|...|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999887743
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.7e-19 Score=167.97 Aligned_cols=288 Identities=15% Similarity=0.122 Sum_probs=102.8
Q ss_pred cCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHH
Q 048358 58 SGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGK 137 (541)
Q Consensus 58 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 137 (541)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik-----------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 568899999999999655 4999999999999999999999964 467779999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH
Q 048358 138 QIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSW 217 (541)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 217 (541)
..++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 988877764 44577888999999999999998887753 67779999999999999999999999877 478
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc
Q 048358 218 TAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC 297 (541)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (541)
..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +..++.-...
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~-------- 212 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE-------- 212 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH--------
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH--------
Confidence 88999999999999999888887 2566666677777766666666433222 1112222223
Q ss_pred CCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 298 GCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 298 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
++..|.+.|++++|..+++...... +-....|+.+..+|++- ++++..+.++...
T Consensus 213 -----------------------lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~ 267 (449)
T 1b89_A 213 -----------------------LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFW 267 (449)
T ss_dssp -----------------------HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHS
T ss_pred -----------------------HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 4444555555555555555544433 33333444444444332 2222222222222
Q ss_pred hhcCCCC------cHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 378 RDHHIEH------KIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 378 ~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
++-.++| +...|..++..|...++++.|....-+-
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2222333 3445666666666667776666544443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=3.2e-17 Score=165.11 Aligned_cols=409 Identities=9% Similarity=0.049 Sum_probs=286.3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCccc
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE--P-NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFT 119 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~ 119 (541)
+-+...|..++. +.+.|+++.|..+|+++.+ | +...|...+..+.+.|++++|..+|+++... .|+...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-------~p~~~l 81 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-------VLHIDL 81 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-------CCCHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCChHH
Confidence 447778888888 4778999999999999876 4 4567999999999999999999999999986 567777
Q ss_pred HHHHHHHH-hccCCchHHHH----HHHHHHHh-CCCC-chhhHHHHHHHHHc---------CCChHHHHHHHhhcCC-CC
Q 048358 120 LPFVIKSC-AGLLCPSLGKQ----IHAHVCKF-GLKS-HSITENALLDLYGK---------CDELIEAHKVFEEMTD-RD 182 (541)
Q Consensus 120 ~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~ 182 (541)
|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 77776533 35677777665 67766654 5443 45677777766654 6788889999988775 32
Q ss_pred h---hhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH------HHCC---CCCCh-
Q 048358 183 I---VAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQM------QMVG---IEPDE- 249 (541)
Q Consensus 183 ~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m------~~~~---~~p~~- 249 (541)
. ..|..........| ...+..++. ...+++..|..++.+. .+.. ++|+.
T Consensus 162 ~~~~~~~~~~~~~e~~~~-~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGIN-IHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp TTHHHHHHHHHHHHHHHC-HHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hhHHHHHHHHHHHHHhhc-hhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 1 12222211100001 011111111 1234456666655542 1111 23431
Q ss_pred -------HHHHHHHHHHHc----cCCh----HHHHHHHHHHHHhCCCccHhHHHHHHHHHHh-------cCCHH------
Q 048358 250 -------ISIVSVLPACAQ----LGSL----ELGEWIHMYCDKNHLLRRTVICNALIEMYIK-------CGCIN------ 301 (541)
Q Consensus 250 -------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~------ 301 (541)
..|...+..... .++. +.+..+|+.+.... +.+...|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 344444332222 1233 36677888887763 4567788888888876 68877
Q ss_pred -HHHHHHHccCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHH
Q 048358 302 -QASQLFDQMVE---R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN-D-ITFIGLLSACAHTGFWNEGLMYFD 374 (541)
Q Consensus 302 -~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~ 374 (541)
+|..+|++..+ | +...|..++..+...|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999998864 3 5678888999999999999999999999985 454 2 478888888888999999999999
Q ss_pred HhhhhcCCCCcHhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 375 SMKRDHHIEHKIEHYGCLVDL-LGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+..+.. +.+...|...+.. +...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+|+++++..|.+
T Consensus 381 ~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 998742 2233333332222 34689999999999987 4445 57888899999999999999999999999887766
Q ss_pred cc----hHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 452 TG----NYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 452 ~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+. .|...+......|+.+.+..+.+++.+.-
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55 78888888888999999999998886543
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.2e-16 Score=166.96 Aligned_cols=411 Identities=11% Similarity=0.086 Sum_probs=312.5
Q ss_pred CChhhHHHHHHhccChhHHHHHHHHHHHhcc--CCchhHHHHHHHHHHcCCChHHHHHHHhcCCC-CC-----cchHHHH
Q 048358 12 ELEDRFVPILQSCENLIELKKIHTQILKYLL--SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE-PN-----VFLYNAM 83 (541)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~l 83 (541)
-|...+..+|......+ +++.++.....+ ..++.-....++.|...|.+.+|+++++++.- ++ ....+.+
T Consensus 951 ~d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 35556666665443222 344444443332 34566667888999999999999999999873 32 2456667
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 048358 84 IRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYG 163 (541)
Q Consensus 84 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 163 (541)
+....+. +..+..+..++.-. ....-+...+...|.+++|..+|++.. ......+.++ -
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~------------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e 1087 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDN------------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---E 1087 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhh------------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---H
Confidence 7766666 55666666555432 124457888999999999999998862 1222223332 2
Q ss_pred cCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048358 164 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMV 243 (541)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 243 (541)
..|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.++|....+.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7789999999999874 4678889999999999999999999775 67788999999999999999999999988776
Q ss_pred CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHH
Q 048358 244 GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIG 323 (541)
Q Consensus 244 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 323 (541)
. ++....+.+..+|++.++++....+.. .++...|..+...|...|++++|..+|..+ ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHH
Confidence 4 443334458889999999886555532 345667778999999999999999999985 58999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLD 403 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (541)
+|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.++
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999876 356899999999999999999988776532 35566789999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHh--hcCCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 404 QALNIIEEM-PMKPD-AKIWGSLLSSCR--TYSNLEIAVIAMEHLLVLEP-----EDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 404 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
+|+.+++.. +..|. ...|..+...+. +-++..++.+.|..-..+.| .+...|.-++..|.+.|+|+.|...
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999877 66653 355655555554 44566777777776666555 5778899999999999999999854
Q ss_pred H
Q 048358 475 R 475 (541)
Q Consensus 475 ~ 475 (541)
+
T Consensus 1378 m 1378 (1630)
T 1xi4_A 1378 M 1378 (1630)
T ss_pred H
Confidence 3
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2.1e-16 Score=157.52 Aligned_cols=362 Identities=12% Similarity=-0.006 Sum_probs=302.7
Q ss_pred HHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHc----CCC
Q 048358 96 AINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAG----LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGK----CDE 167 (541)
Q Consensus 96 A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~ 167 (541)
++..++...+ ..+...+..+...+.. .++++.|...++...+.| +...+..|...|.. .++
T Consensus 26 ~~~~~~~~a~--------~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 26 NLEQLKQKAE--------SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp CHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 3555555554 3466777777777777 899999999999999875 56778888899998 899
Q ss_pred hHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChHHHHHHH
Q 048358 168 LIEAHKVFEEMTD-RDIVAWNNLISGYAR----LGQMKKARMLFDKMPY-TTIVSWTAMISGYTH----IGSYAEALDVF 237 (541)
Q Consensus 168 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 237 (541)
+++|.+.|++..+ .+...+..+...|.. .+++++|.+.|++... .++.++..+...|.. .+++++|++.|
T Consensus 95 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 95 YAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999998765 466788888888888 8899999999998754 466788888888887 88999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh----cCCHHHHHHHHHc
Q 048358 238 RQMQMVGIEPDEISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK----CGCINQASQLFDQ 309 (541)
Q Consensus 238 ~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 309 (541)
++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998875 56777777777777 899999999999998876 46678888888887 8899999999998
Q ss_pred cCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhh
Q 048358 310 MVE-RDVVSWSTVIGGLAN----HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT-----GFWNEGLMYFDSMKRD 379 (541)
Q Consensus 310 ~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~ 379 (541)
..+ .++..+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+.
T Consensus 249 a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 855 467788888888888 899999999999998875 455677777777776 8999999999999874
Q ss_pred cCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCc
Q 048358 380 HHIEHKIEHYGCLVDLLGRAG---RLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.+...+..+...|...| ++++|+++|++.-...+...+..+...|.. .+++++|...|+++.+.+ ++
T Consensus 326 ----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~ 399 (490)
T 2xm6_A 326 ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LS 399 (490)
T ss_dssp ----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred ----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CH
Confidence 34566788888888767 889999999988323678888889998888 899999999999998864 57
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 048358 453 GNYVLLSNIYAK----HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 453 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 483 (541)
.++..|+.+|.+ .+++++|...+++..+.+.
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999 8999999999999988763
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.8e-17 Score=152.54 Aligned_cols=267 Identities=10% Similarity=0.016 Sum_probs=192.9
Q ss_pred hcCCHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHH
Q 048358 195 RLGQMKKARMLFDKMPYTTI----VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEW 270 (541)
Q Consensus 195 ~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 270 (541)
..|++..|+..++.....++ .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34555555555544433222 23334455666666666666544331 24455555556666666666666666
Q ss_pred HHHHHHHhCC-CccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 048358 271 IHMYCDKNHL-LRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN 349 (541)
Q Consensus 271 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 349 (541)
.++.+...+. +.+...+..+..+|...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+.. |+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence 6666655543 33566777788999999999999999998 5678889999999999999999999999998864 55
Q ss_pred HHHH---HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 048358 350 DITF---IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSL 424 (541)
Q Consensus 350 ~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 424 (541)
.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..++..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4321 12334445669999999999999985 4678889999999999999999999999997 5556 67889999
Q ss_pred HHHHhhcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 425 LSSCRTYSNLEI-AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 425 ~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
+..+...|+.++ +.++++++++.+|+++.+ .+...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 999999999875 678999999999998754 34566666777766544
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=9.1e-17 Score=161.80 Aligned_cols=373 Identities=8% Similarity=0.021 Sum_probs=245.9
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhH
Q 048358 76 NVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITE 155 (541)
Q Consensus 76 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (541)
+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|+++.|..+|+.++... |+...|
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 5567777777 467788888888888888764 5566677888888888888888888888887754 466666
Q ss_pred HHHHHH-HHcCCChHHHHH----HHhhcCC------CChhhHHHHHHHHHh---------cCCHHHHHHHHhcCCC-CCc
Q 048358 156 NALLDL-YGKCDELIEAHK----VFEEMTD------RDIVAWNNLISGYAR---------LGQMKKARMLFDKMPY-TTI 214 (541)
Q Consensus 156 ~~l~~~-~~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~ 214 (541)
..++.. ....|+.++|.+ +|+.... ++...|...+....+ .|+++.|..+|++... |..
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 655542 234566665554 4443311 233445444444332 3445555555544432 110
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHH------HhC---CCc
Q 048358 215 ---VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCD------KNH---LLR 282 (541)
Q Consensus 215 ---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~ 282 (541)
..|..........|. .+...++. ...+++..|..++.... +.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 011111110000000 00000000 13345667776666532 111 233
Q ss_pred c--------HhHHHHHHHHHHhc----CCH----HHHHHHHHccCC---CChhHHHHHHHHHHh-------cCChH----
Q 048358 283 R--------TVICNALIEMYIKC----GCI----NQASQLFDQMVE---RDVVSWSTVIGGLAN-------HGKAH---- 332 (541)
Q Consensus 283 ~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~---- 332 (541)
+ ...|...+...... ++. +.+..+|++... .++..|..++..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 3 24666665444332 232 467778887744 367788888888775 79987
Q ss_pred ---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc-H-hHHHHHHHHHHhcCCHHHHHH
Q 048358 333 ---KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK-I-EHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 333 ---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~ 407 (541)
+|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999987323556788889999999999999999999999974 343 3 579999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 408 IIEEM-PMKPD-AKIWGSLLSS-CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 408 ~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+|++. ...|+ ...|...... +...|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..++++....+
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99998 44443 3333333222 3468999999999999999999999999999999999999999999999998874
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=8.5e-19 Score=167.96 Aligned_cols=260 Identities=11% Similarity=0.000 Sum_probs=209.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHH
Q 048358 213 TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIE 292 (541)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (541)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567788888888888888888888888764 4466778888888888888888888888888765 345778888888
Q ss_pred HHHhcCCHHHHHHHHHccCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 048358 293 MYIKCGCINQASQLFDQMVERD-------------VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP--NDITFIGLL 357 (541)
Q Consensus 293 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~ 357 (541)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|..+|+++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 8999999999999888874421 2233445788899999999999999998875 33 688899999
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 435 (541)
..+...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|+..|+++ ...| +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998853 567888999999999999999999999988 4455 5788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 436 IAVIAMEHLLVLEPE------------DTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
+|...++++++..|. +...|..++.++...|+.+.|..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988766 367899999999999999999887765
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=3e-19 Score=171.16 Aligned_cols=274 Identities=11% Similarity=0.014 Sum_probs=218.3
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHH
Q 048358 248 DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGG 324 (541)
Q Consensus 248 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 324 (541)
+...+..+...+.+.|+++.|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557888889999999999999999999876 45688999999999999999999999998843 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-H----------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLKVPPN-D----------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~~p~-~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|...|+++.+.....++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 32 2 2233457889999999999999999998642222688899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
..|...|++++|++.|+++ ...| +..+|..+..++...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 4444 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccccccc
Q 048358 472 SRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYED 538 (541)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 538 (541)
...++++.+......... ..........++..|+.++..+|+.+.+.....++
T Consensus 301 ~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQ--------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCc--------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999876532110000 00011124688999999999999988776655544
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.4e-17 Score=165.55 Aligned_cols=363 Identities=9% Similarity=-0.052 Sum_probs=207.6
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHh-----C---CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC--------
Q 048358 117 KFTLPFVIKSCAGLLCPSLGKQIHAHVCKF-----G---LKSHSITENALLDLYGKCDELIEAHKVFEEMTD-------- 180 (541)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 180 (541)
...|+.+...+...|+.++|.+.+++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555666666666666666666555432 0 111234566666666666666666666555421
Q ss_pred ---CChhhHHHHHHHHHhc--CCHHHHHHHHhcCC---CCCcchHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCh
Q 048358 181 ---RDIVAWNNLISGYARL--GQMKKARMLFDKMP---YTTIVSWTAMISG---YTHIGSYAEALDVFRQMQMVGIEPDE 249 (541)
Q Consensus 181 ---~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~---~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~~~p~~ 249 (541)
....++..+..++... +++++|.+.|++.. +.++..+..+..+ +...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1123344444344332 34667777766653 2234444444443 334566667777777766553 2334
Q ss_pred HHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHH
Q 048358 250 ISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVI 322 (541)
Q Consensus 250 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 322 (541)
..+..+...+.. .++.+.|.+.++...... +.+..++..+...|...|++++|...|.+..+ | +..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 444444433332 345667777777766654 33456677777777777777777777776633 2 444555555
Q ss_pred HHHHh-------------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCC
Q 048358 323 GGLAN-------------------HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIE 383 (541)
Q Consensus 323 ~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 383 (541)
.+|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|+..|++..... ..
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-~~ 366 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE-LT 366 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-CC
Confidence 44432 233677888888887765 5566788889999999999999999999988642 22
Q ss_pred CcH--hHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 384 HKI--EHYGCLVD-LLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 384 ~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+.. ..+..+.. .+...|++++|+..|++. .+.|+....... ...+..++++.++.+|+++.+|..|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 221 12333332 245789999999999887 666765433322 34456678888889999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCccCCceeEE
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLI 492 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 492 (541)
.+|...|++++|.+.|++..+.+...+.+.+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999998776555555453
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.7e-17 Score=163.40 Aligned_cols=349 Identities=9% Similarity=0.016 Sum_probs=230.6
Q ss_pred CchhhHHHHHHHHHcCCChHHHHHHHhhcCC------------CChhhHHHHHHHHHhcCCHHHHHHHHhcCC-------
Q 048358 150 SHSITENALLDLYGKCDELIEAHKVFEEMTD------------RDIVAWNNLISGYARLGQMKKARMLFDKMP------- 210 (541)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------- 210 (541)
.....|+.|..++...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999887532 235678889999999999999988887653
Q ss_pred C----CCcchHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHH---HHccCChHHHHHHHHHHHHhCC
Q 048358 211 Y----TTIVSWTAMISGYTHI--GSYAEALDVFRQMQMVGIEPDE-ISIVSVLPA---CAQLGSLELGEWIHMYCDKNHL 280 (541)
Q Consensus 211 ~----~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 280 (541)
. ....++..+..++... +++++|+..|++..+. .|+. ..+..+... +...++.+.|...++.+.+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 1234566655555544 5689999999998876 4543 333333333 445677788888888887765
Q ss_pred CccHhHHHHHHHHHHh----cCCHHHHHHHHHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 048358 281 LRRTVICNALIEMYIK----CGCINQASQLFDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITF 353 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 353 (541)
+.+..++..+...+.. .|++++|.+.+++.. ..+..++..+...|...|++++|...+++..+.. |.+..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 3345556655555444 456778888888763 3466788888999999999999999999988764 4455666
Q ss_pred HHHHHHHhcc-------------------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 048358 354 IGLLSACAHT-------------------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P 413 (541)
Q Consensus 354 ~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 413 (541)
..+..+|... +.++.|...++...... +.+...+..+...|...|++++|++.|++. .
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 6666555322 23566777777776643 445566778888888888888888888876 3
Q ss_pred CCCCHHH----HHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCc
Q 048358 414 MKPDAKI----WGSLLS-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 414 ~~p~~~~----~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 488 (541)
..|+... +..+.. .....|+.++|+..|++++++.|.+.... +..+.+.+++++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l--------- 423 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRL--------- 423 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHH---------
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHH---------
Confidence 4444322 222222 23567888888888888888888753221 12233334444332
Q ss_pred eeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 489 CSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
+.+|+++.++..||.+|..+|+.++|++.++++++
T Consensus 424 -----------------~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 424 -----------------SKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp -----------------HHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred -----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999885
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.6e-17 Score=155.91 Aligned_cols=363 Identities=10% Similarity=0.019 Sum_probs=179.2
Q ss_pred ChhhHHHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 048358 13 LEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHL 92 (541)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 92 (541)
+......+|..+++++++.++.+.+ +++.+|+.+..++.+.|++++|.+.|.+. +|...|..++.++...|+
T Consensus 5 ~~~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 5 NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 3455667888888888888887766 34569999999999999999999999764 577799999999999999
Q ss_pred hhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHH
Q 048358 93 YGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAH 172 (541)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 172 (541)
+++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|.
T Consensus 77 ~EeAi~yl~~ark~-------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 77 WEELVKYLQMARKK-------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred HHHHHHHHHHHHHh-------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999977776664 4668889999999999999999988774 467789999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 048358 173 KVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISI 252 (541)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (541)
..|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. +.|+ ..
T Consensus 143 ~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l 210 (449)
T 1b89_A 143 LLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 210 (449)
T ss_dssp HHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HH
T ss_pred HHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hH
Confidence 999988 589999999999999999999999994 88999999999999999999966555422 2343 35
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc--CCHHHHHHHHHccCC--------CChhHHHHHH
Q 048358 253 VSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC--GCINQASQLFDQMVE--------RDVVSWSTVI 322 (541)
Q Consensus 253 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l~ 322 (541)
..++..|.+.|.++++..+++...... +-....|+.|.-+|++- +++.+..+.|..-.. .+...|..+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988765 55677888888887764 456667777665433 2567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCH
Q 048358 323 GGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRL 402 (541)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 402 (541)
..|...++++.|... |.+. +|+...-..+.....+..+.+--.+...-.... .|.. .+.|+.++...=+.
T Consensus 290 ~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p~~--l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLL--LNDLLMVLSPRLDH 359 (449)
T ss_dssp HHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGGG--HHHHHHHHGGGCCH
T ss_pred HHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CHHH--HHHHHHHHHhccCc
Confidence 999999999998764 4443 344333333444444555544433333333332 2443 57788888777788
Q ss_pred HHHHHHHHhCCCCCCHHH
Q 048358 403 DQALNIIEEMPMKPDAKI 420 (541)
Q Consensus 403 ~~A~~~~~~~~~~p~~~~ 420 (541)
..+.++|++.+.-|-...
T Consensus 360 ~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp HHHHHHHHHTTCTTTTHH
T ss_pred HHHHHHHHHcCCcHHHHH
Confidence 888888888754343333
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=9.5e-18 Score=157.82 Aligned_cols=277 Identities=12% Similarity=0.050 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 87 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK----------- 87 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC-----------
Confidence 3456677777888888888888888877653 2344445455555555555555555555554442 12
Q ss_pred HHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-
Q 048358 294 YIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGL--------------LS- 358 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------~~- 358 (541)
+..++..+...+...|++++|...++++.+.. +.+...+..+ ..
T Consensus 88 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 88 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------C
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 33444555555555555555555555555442 2222222222 22
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 436 (541)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3778899999999999998753 557788999999999999999999999987 3344 57889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHH
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFW 516 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 516 (541)
|...++++++..|.++..+..++.+|.+.|++++|.+.++++........... +.........++.
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~~~ 290 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT--------------GEASREATRSMWD 290 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-------------------CCTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc--------------ccchhhcCHHHHH
Confidence 99999999999999999999999999999999999999999876432110000 0000122688899
Q ss_pred HHHHHHHHHhcccCCcccccccCC
Q 048358 517 LLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 517 ~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.++.++..+|+.++|...+.++++
T Consensus 291 ~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 291 FFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999888763
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1e-17 Score=157.68 Aligned_cols=275 Identities=9% Similarity=0.020 Sum_probs=217.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 182 DIVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
+...+..+...+...|++++|...|+++. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 44567788899999999999999999875 3466788999999999999999999999998874 4567788888888
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHH--HHHhcCChHHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIG--GLANHGKAHKAIH 336 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~ 336 (541)
+...|+++.|...++.+.+.... +...+..+.... ++......+.. .+...|++++|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 99999999999999988876432 222222221110 11111112212 2667788999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048358 337 LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK 415 (541)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 415 (541)
.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++ ...
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999988865 5577888899999999999999999999998753 556788899999999999999999999987 334
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE------------DTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
| +..++..+...+...|++++|...++++++..|. ++..+..++.++.+.|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4 5788889999999999999999999999999988 78899999999999999999999887543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2.9e-18 Score=157.79 Aligned_cols=245 Identities=11% Similarity=0.050 Sum_probs=201.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDE--ISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG 298 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (541)
++-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999876533 4543 3456678899999999999986654 24567788999999999999
Q ss_pred CHHHHHHHHHccC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 299 CINQASQLFDQMV----ER-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 299 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
+.++|.+.++++. .| ++..+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999873 24 566778888999999999999999987 567888999999999999999999999
Q ss_pred HHhhhhcCCCCcHh-H--HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 374 DSMKRDHHIEHKIE-H--YGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 374 ~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+.+.+.. |+.. . ...++..+...|++++|..+|+++ ....+...++.+..++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998753 4432 1 122334445569999999999998 333478889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 048358 449 PEDTGNYVLLSNIYAKHGRWED-VSRMRKLIRS 480 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 480 (541)
|+++.++..++.++...|++++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999976 5788888765
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=2.2e-16 Score=138.70 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=89.4
Q ss_pred ccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 282 RRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358 (541)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 358 (541)
++...+..+...+.+.|++++|...|++..+ .++..+..+..++...|++++|+..|++..+.. |.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444555555555555555555555555422 134455555555555555555555555555543 334444555555
Q ss_pred HHhcc-----------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 048358 359 ACAHT-----------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLS 426 (541)
Q Consensus 359 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 426 (541)
++... |++++|+..|++..+.. |.+...+..+..+|...|++++|+..|++. .+..+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 55555 55555555555554421 233444444555555555555555555444 11134444444555
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (541)
++...|++++|+..++++++.+|+++..+..++.++.+.|++++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544443
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=6.4e-16 Score=135.78 Aligned_cols=195 Identities=16% Similarity=0.082 Sum_probs=146.8
Q ss_pred CCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHH
Q 048358 246 EPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVI 322 (541)
Q Consensus 246 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 322 (541)
+++...+..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|++..+ | +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5667778888888889999999999999888765 44577888888999999999999999988743 3 566888888
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHH
Q 048358 323 GGLANH-----------GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGC 391 (541)
Q Consensus 323 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 391 (541)
.++... |++++|+..|++..+.. |-+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHH
Confidence 888888 99999999999888865 4567778888888899999999999999988753 67777888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
+..+|...|++++|+..|++. ...| +...+..+...+...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999998887 4445 56778888888889999999988887653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-15 Score=137.34 Aligned_cols=211 Identities=12% Similarity=0.046 Sum_probs=153.3
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C----C----hhHHHHHHHHHHh
Q 048358 258 ACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R----D----VVSWSTVIGGLAN 327 (541)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~~~~~ 327 (541)
.+...|+++.|...++.+.+.. .+..++..+..+|...|++++|...+++..+ | + ..+|..+...+..
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333 3344455555555555555555555555422 1 1 4567777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.|++++|...|+++... .|+. ..+...|++++|...++.+... .+.+...+..+...+...|++++|..
T Consensus 92 ~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 92 LGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888888888774 3443 3455668889999999988863 24556778888999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 408 IIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 408 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+++. ...| +..++..+...+...|++++|+..++++++..|+++..+..++.++.+.|++++|...+++..+.
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99887 3334 57888889999999999999999999999999999999999999999999999999999988764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.4e-16 Score=138.74 Aligned_cols=237 Identities=9% Similarity=0.023 Sum_probs=194.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc--c----HhHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR--R----TVICN 288 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 288 (541)
..|..+...+...|++++|+..|+++.+.. .+...+..+...+...|+++.|...+..+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888888899999999998888876 777888888888888999999988888887653211 1 57888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 368 (541)
.+...|...|++++|...|+++.+.+.. ...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999888442211 245666788999999999998864 4556778888999999999999
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
|...|+++.+.. +.+...+..+...|...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998753 566788999999999999999999999988 4445 578899999999999999999999999999
Q ss_pred cC------CCCcchHHHHHHH
Q 048358 447 LE------PEDTGNYVLLSNI 461 (541)
Q Consensus 447 ~~------~~~~~~~~~l~~~ 461 (541)
.. |.+...+..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 88 7777766666543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=5.7e-15 Score=134.82 Aligned_cols=246 Identities=13% Similarity=0.011 Sum_probs=157.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc--cHhHHHHHHHHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLR--RTVICNALIEMY 294 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 294 (541)
+......+...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++.+.+....+ ....|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445555666666666666666665542 2233355555556666666666666666665522111 122366677777
Q ss_pred HhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
...|++++|...|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776632 355677777777777788888887777777653 4455566666623333458888888
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHhhcCCHHHHH
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGR---LDQALNIIEEM----PMKPD------AKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~~~~~a~ 438 (541)
.|+.+.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...+...|++++|+
T Consensus 164 ~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888877642 4446667777777777776 66676666665 11233 256777888889999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
..++++++++|+++.++..+.......+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999888888777665544
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.6e-14 Score=131.93 Aligned_cols=244 Identities=11% Similarity=-0.017 Sum_probs=196.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CCh----hHHHHHHHH
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--RDV----VSWSTVIGG 324 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~ 324 (541)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++..+ ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677889999999999999999875 34566888899999999999999999998854 232 248899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH
Q 048358 325 LANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 325 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (541)
+...|++++|+..|++..+.. +.+...+..+...|...|++++|+..|++..+. .+.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 556788999999999999999999999999874 35567778888834444569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCCHHHH
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLE---PED-----TGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A 471 (541)
|.+.|+++ ...| +...+..+...+...|+ +++|+..++++++.. |+. ..+|..++.+|.+.|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 4455 46777788888888888 888999999998765 332 25888899999999999999
Q ss_pred HHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 472 SRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
.+.++++.+ ++|+++.+...++.+...
T Consensus 241 ~~~~~~al~--------------------------~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 241 DAAWKNILA--------------------------LDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHH--------------------------HCTTCHHHHHHHC-----
T ss_pred HHHHHHHHh--------------------------cCccHHHHHHHhhhhhcc
Confidence 999999876 357777777766665543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.7e-14 Score=141.56 Aligned_cols=343 Identities=13% Similarity=0.016 Sum_probs=218.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCCh---HHHHHHHhhcCCCChhhHHHHHHHHHhcC-
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDEL---IEAHKVFEEMTDRDIVAWNNLISGYARLG- 197 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 197 (541)
.+...+.+.|++++|.+.++...+.| +...+..|...|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667778899999999999998887 334445566677777877 89999998887766667777777555554
Q ss_pred ----CHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHH
Q 048358 198 ----QMKKARMLFDKMPYT-TIVSWTAMISGYTHIGSYA---EALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGE 269 (541)
Q Consensus 198 ----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 269 (541)
++++|.+.|++...+ ++.++..|...|...+..+ ++.+.+......|. ......+...+...+.++.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 678888888876543 4567888888887766543 34555555554442 334555666666666554443
Q ss_pred HHHHHHHHhCCCccHhHHHHHHHHHHhcC---CHHHHHHHHHccCCC---ChhHHHHHHHHHHhc----CChHHHHHHHH
Q 048358 270 WIHMYCDKNHLLRRTVICNALIEMYIKCG---CINQASQLFDQMVER---DVVSWSTVIGGLANH----GKAHKAIHLFH 339 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~~ 339 (541)
.......+.-...++..+..|...|...| +.++|...|+...+. +...+..+...|... +++++|..+|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 33333332222334447788888888888 888888888877432 333446677777554 68888998888
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC-----CHHHHHHHHHh
Q 048358 340 EMQRLKVPPNDITFIGLLSA-C--AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG-----RLDQALNIIEE 411 (541)
Q Consensus 340 ~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 411 (541)
+.. .| +...+..+... + ...+++++|...|++..+. | +...+..|...|. .| ++++|.++|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 877 33 44556666655 3 4578889999988888763 2 5666777777776 45 88899998888
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 048358 412 MPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 412 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 482 (541)
.- ..+...+..+...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|...++...+.|
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 5577777777776655 34888899988888774 456678888888875 458888888888887765
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=160.66 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 048358 184 VAWNNLISGYARLGQMKKARMLFDKM-------PYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVL 256 (541)
Q Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 256 (541)
.+|+++|++|++.|++++|.++|+.| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 47777788888888888888887654 26899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-HHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----CChhHHHHHHHHHHhcC
Q 048358 257 PACAQLGSL-ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-----RDVVSWSTVIGGLANHG 329 (541)
Q Consensus 257 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 329 (541)
.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.. +.+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999877776544444444333311 11334444555555443
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=6.1e-14 Score=123.79 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=156.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+..++..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455677777778888888888888877632 356677888888888888888888888887764 5567778888888
Q ss_pred Hhcc-CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH
Q 048358 360 CAHT-GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 360 ~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 436 (541)
+... |++++|...++.+.+....+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 8899998888888762122334667788888888899999998888877 3334 47778888888888999999
Q ss_pred HHHHHHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 437 AVIAMEHLLVLEP-EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 437 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|...++++++..| .++..+..++..+...|+.++|..+++.+...
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988888 88888888888888899999999888887653
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=3.7e-15 Score=144.66 Aligned_cols=299 Identities=13% Similarity=0.016 Sum_probs=216.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCC-ccHh
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPD----EISIVSVLPACAQLGSLELGEWIHMYCDKN----HLL-RRTV 285 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 285 (541)
..+......+...|++++|...|++..+.+ +.+ ...+..+...+...|+++.|...++.+.+. +.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 445566677777888888888888877653 222 245666677777788888888877766543 111 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGK--------------------AHKAIH 336 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 336 (541)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677788888888999988888877633 12 3477788888888899 899998
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHH
Q 048358 337 LFHEMQRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALN 407 (541)
Q Consensus 337 ~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 407 (541)
.+++.... +-.| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88876542 2111 2346778888899999999999999988753211122 3378889999999999999999
Q ss_pred HHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHH
Q 048358 408 IIEEM-PM---KPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 408 ~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
.+++. .+ .++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99876 11 112 5677888888999999999999999998865332 5588899999999999999999
Q ss_pred HHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccc
Q 048358 474 MRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534 (541)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 534 (541)
.+++..+.... ....|....++..++.++..+|+.......
T Consensus 329 ~~~~al~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 329 FAEKHLEISRE--------------------VGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp HHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHH--------------------hcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 99987653210 112456678899999999999987554433
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=6.4e-15 Score=131.94 Aligned_cols=196 Identities=12% Similarity=0.139 Sum_probs=146.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345667777788888888888888887743 356678888888888899999999998888764 5567788888888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 437 (541)
+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999888743 556777888888899999999999988887 3334 577888888888999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+..++++++..|.++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999988889999999999999999999999988663
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=7.4e-17 Score=163.48 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCc
Q 048358 45 SNFLVTKMIDVCNSGGDLAYASLLFKQVK-------EPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK 117 (541)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~ 117 (541)
-..+||++|++||+.|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+ .||.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-----~PDv 200 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-----TPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----CCCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCcH
Confidence 45689999999999999999999997653 49999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHhccCCc-hHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCC-----CChhhHHHHHH
Q 048358 118 FTLPFVIKSCAGLLCP-SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD-----RDIVAWNNLIS 191 (541)
Q Consensus 118 ~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~ 191 (541)
.||+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+.. +...+...|.+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999986 78899999999999999999999998776665433333333222221 12345555666
Q ss_pred HHHhcC
Q 048358 192 GYARLG 197 (541)
Q Consensus 192 ~~~~~~ 197 (541)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=3.1e-14 Score=130.09 Aligned_cols=242 Identities=10% Similarity=-0.082 Sum_probs=187.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCC---CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHH
Q 048358 225 THIGSYAEALDVFRQMQMVGIE---PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCIN 301 (541)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (541)
...|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+..++..++..|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457788888888888865321 134567777788888888888888888888775 345778888999999999999
Q ss_pred HHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 302 QASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 302 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
+|...|+++.+ .+..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988743 367789999999999999999999999998854 5544445555556777999999999988877
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.. +++...+ .++..+...++.++|.+.+++. ...|+ ..++..+...+...|++++|...++++++.+|++.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 43 4444444 4777788888899999999887 43342 57788888999999999999999999999998875
Q ss_pred chHHHHHHHHHhcCCHHHHHHHH
Q 048358 453 GNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
.. .+.++...|++++|.+.+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 44 366788889999988766
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=4e-14 Score=134.55 Aligned_cols=245 Identities=9% Similarity=0.115 Sum_probs=190.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
.+|..+..++...|++++|+..|++.+.. .|+ +..+|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~----------------------------------~~~a~~~~g~~l 141 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc----------------------------------CHHHHHHHHHHH
Confidence 45666666777777777777777776654 333 455667777777
Q ss_pred HhcCC-HHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048358 295 IKCGC-INQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 295 ~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 370 (541)
...|+ +++|+..|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHH
Confidence 77775 7777777777633 356678888888888888999999999888875 667788888888888899999999
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHhhcC--CHHHHHHH
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGR-AGRLDQA-----LNIIEEM-PMKP-DAKIWGSLLSSCRTYS--NLEIAVIA 440 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~ 440 (541)
..|+++.+.. +.+...|+.+..++.+ .|..++| ++.|++. .+.| +...|..+...+...| ++++|++.
T Consensus 221 ~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 9999988753 5567888888888888 5665777 4667666 5556 5678888888888888 68999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcC---------CHHHHHHHHHHh-hhCCCccCCceeEEEEcCEEEEEEeCCCCCCC
Q 048358 441 MEHLLVLEPEDTGNYVLLSNIYAKHG---------RWEDVSRMRKLI-RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPF 510 (541)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 510 (541)
+.++ +.+|+++..+..++.+|.+.| .+++|.++++++ .+ .+|.
T Consensus 299 ~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------------------------~DP~ 351 (382)
T 2h6f_A 299 LLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------------------------KDTI 351 (382)
T ss_dssp HHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------------------------TCGG
T ss_pred HHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------------------------hCch
Confidence 9998 888999999999999999874 358999999997 44 4688
Q ss_pred hhHHHHHHHHHHHHH
Q 048358 511 LKDIFWLLELLALHQ 525 (541)
Q Consensus 511 ~~~~~~~l~~~~~~~ 525 (541)
....|..++..+..+
T Consensus 352 r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 352 RKEYWRYIGRSLQSK 366 (382)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 888888888877654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=5.4e-14 Score=133.63 Aligned_cols=244 Identities=10% Similarity=0.083 Sum_probs=179.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 048358 183 IVAWNNLISGYARLGQMKKARMLFDKMP---YTTIVSWTAMISGYTHIGS-YAEALDVFRQMQMVGIEPDEISIVSVLPA 258 (541)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 258 (541)
...|..+...+.+.|++++|++.|++.. ..+..+|+.+..++...|+ +++|+..|++++.. .|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC----------
Confidence 4578889999999999999999999876 3456789999999999997 99999999999876 343
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+..+|..+..++...|++++|+..|+++.+ .+..+|..+..++...|++++|+
T Consensus 165 ------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 ------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 344455555555566666666666665532 25556667777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHH-----HHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC--CHHHHHH
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACAH-TGFWNEG-----LMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG--RLDQALN 407 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~ 407 (541)
..|+++++.. +-+...|+.+..++.. .|..++| +..|++..... +.+...|..+..++...| ++++|++
T Consensus 221 ~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 221 QYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 7777777765 4566677777777776 4554555 47777776642 455677788888887777 5788888
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHhhcC---------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 048358 408 IIEEMPMKP-DAKIWGSLLSSCRTYS---------NLEIAVIAMEHL-LVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 408 ~~~~~~~~p-~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+.++...| +...+..+...+.+.| .+++|+.+++++ .+.+|.....|..++..+...
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 877774445 4567777777776653 258999999999 899999888898888877654
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=1e-13 Score=136.01 Aligned_cols=376 Identities=9% Similarity=-0.020 Sum_probs=256.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCchhhHHHH
Q 048358 82 AMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP---SLGKQIHAHVCKFGLKSHSITENAL 158 (541)
Q Consensus 82 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l 158 (541)
.+...+.+.|++++|...|++..+.| +...+..+...+...|++ ++|...|+...+. ++..+..|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g--------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG--------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--------CCTGGGTCC--------------------------------CHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 46778889999999999999998854 455666677777778888 8999999988764 55566667
Q ss_pred HHHHHcCC-----ChHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHH---HHHHhcCC-CCCcchHHHHHHHHHhcC
Q 048358 159 LDLYGKCD-----ELIEAHKVFEEMTDR-DIVAWNNLISGYARLGQMKKA---RMLFDKMP-YTTIVSWTAMISGYTHIG 228 (541)
Q Consensus 159 ~~~~~~~g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~-~~~~~~~~~l~~~~~~~g 228 (541)
...+...| ++++|...|++..++ +...+..|...|...+..+++ .+.+.... ..++..+..+...|...+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 77565555 788999999988764 455788888888876654443 33343332 345678888999999988
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC---ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc----CCHH
Q 048358 229 SYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG---SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC----GCIN 301 (541)
Q Consensus 229 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 301 (541)
.++++........+.-...+...+..+...+...| +.++|...|+...+.|. ++...+..|...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555554333333222333337778888888899 89999999999999884 4455556678888665 7999
Q ss_pred HHHHHHHccCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHH
Q 048358 302 QASQLFDQMVERDVVSWSTVIGG-L--ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG-----FWNEGLMYF 373 (541)
Q Consensus 302 ~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~ 373 (541)
+|...|+.....++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|
T Consensus 235 ~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 235 TAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999999884467788888887 4 46899999999999999877 5667777777776 45 999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHh
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLL 445 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 445 (541)
++.. . .+...+..|...|.. ..++++|.++|++.-...+......|...|.. ..+.++|...|+++.
T Consensus 311 ~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 311 EKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 9887 2 456677788888776 34999999999998323345556666666653 569999999999999
Q ss_pred ccCCCCcchHHHHHHHH--HhcCCHHHHHHHHHHhhhC
Q 048358 446 VLEPEDTGNYVLLSNIY--AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 446 ~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 481 (541)
+.+++.. ...+..+. ...++.++|.++.++....
T Consensus 386 ~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 386 AQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8776543 33444333 3345677888888876654
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.5e-14 Score=132.23 Aligned_cols=242 Identities=11% Similarity=-0.030 Sum_probs=192.4
Q ss_pred HccCChHHHHHHHHHHHHhCC---CccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHH
Q 048358 260 AQLGSLELGEWIHMYCDKNHL---LRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHK 333 (541)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 333 (541)
...|+++.|...++.+.+... +.+..++..++..|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999988642 23467889999999999999999999998843 467899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 334 AIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. |+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999875 5567889999999999999999999999998753 44334444555667789999999999776
Q ss_pred CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCC
Q 048358 413 PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE----DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTP 487 (541)
Q Consensus 413 ~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (541)
... ++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|...++++...
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 244 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN------ 244 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Confidence 222 333333 4677788889999999999999887653 3688999999999999999999999998764
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 488 GCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
+|++.. ..+..+..+|+.++|++.+
T Consensus 245 --------------------~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --------------------NVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --------------------CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred --------------------CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 344433 3366778888888888765
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=8.3e-14 Score=125.50 Aligned_cols=197 Identities=8% Similarity=-0.037 Sum_probs=156.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677777788888888888888877632 356677888888888888888888888887764 45677788888888
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
...|++++|..+++++......+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888761112335667788888888889999998888887 3334 5677888888888899999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
..++++++..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999998888888888888888999999999999988888664
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4e-14 Score=126.73 Aligned_cols=213 Identities=14% Similarity=0.116 Sum_probs=144.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
..|..+...+...|++++|...|+++.+. .| .+...+..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~~~ 67 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFANLL 67 (243)
T ss_dssp ------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHHHH
Confidence 45566666666667777777666666643 22 2344455555666
Q ss_pred HhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLM 371 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 371 (541)
...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666666655522 355667777788888888888888888887765 5567778888888889999999999
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
.++++.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +..++..+...+...|++++|...++++++..|
T Consensus 147 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 999888743 456778888899999999999999999887 3334 577888899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcC
Q 048358 450 EDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g 466 (541)
+++..+..+.......|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 99888887766554433
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.4e-13 Score=117.41 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
++..|..+...|...|++++|+..|++..+.. |-+..++..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 56678888899999999999999999988875 5677788888999999999999999999988743 55667778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
..+...++++.|.+.+++. ...| +...+..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999998887 4444 5778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCC
Q 048358 472 SRMRKLIRSKS 482 (541)
Q Consensus 472 ~~~~~~m~~~~ 482 (541)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987754
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=5.8e-13 Score=121.53 Aligned_cols=224 Identities=13% Similarity=0.010 Sum_probs=112.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCccHhHHH
Q 048358 213 TIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ----LGSLELGEWIHMYCDKNHLLRRTVICN 288 (541)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (541)
++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666677777777777777776652 233344444444555 555555555555555443 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 048358 289 ALIEMYIK----CGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH-- 362 (541)
Q Consensus 289 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 362 (541)
.+...|.. .+++++|.. .|++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~-------------------------------~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQ-------------------------------YYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHH-------------------------------HHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHH-------------------------------HHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444444 444444444 444444432 33344444444444
Q ss_pred --cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 048358 363 --TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YS 432 (541)
Q Consensus 363 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 432 (541)
.+++++|+..|++..+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 44555555555444432 1 23334444444444 45555555555444111233444444445555 55
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 048358 433 NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 482 (541)
++++|+..++++.+.+| +..+..++.+|.+ .+++++|.+.+++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55555555555555433 3445555555555 555555555555555443
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.1e-13 Score=119.76 Aligned_cols=204 Identities=14% Similarity=0.054 Sum_probs=143.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHH
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMY 294 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (541)
..|..+...+...|++++|...|+++.+.. +. +..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~-----------------------------------~~~~~~~la~~~ 81 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS-----------------------------------SADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT-----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC-----------------------------------hHHHHHHHHHHH
Confidence 455666666666666666666666665542 22 344455555555
Q ss_pred HhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 048358 295 IKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPP-NDITFIGLLSACAHTGFWNEGL 370 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 370 (541)
...|++++|.+.|+++.+ .+...+..+...|...|++++|..+++++...+..| +...+..+...+...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666555422 245566677777777788888888888777632233 4556777778888888888888
Q ss_pred HHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 371 MYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
..++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|.+.++++.+..
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888887642 445777888888888899999999888887 4344 56677778888889999999999999999998
Q ss_pred CCCcchHH
Q 048358 449 PEDTGNYV 456 (541)
Q Consensus 449 ~~~~~~~~ 456 (541)
|+++....
T Consensus 240 p~~~~~~~ 247 (252)
T 2ho1_A 240 PGSLEYQE 247 (252)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 88776544
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=7.5e-13 Score=120.79 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=165.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVER-DVVSWSTVIGGLAN----HGKAHKAIHLFHEMQRLKVPPNDITFIGLL 357 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 357 (541)
++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|..+|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4567777888888999999999999887654 56678888889999 999999999999999876 677888899
Q ss_pred HHHhc----cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 358 SACAH----TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429 (541)
Q Consensus 358 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 429 (541)
..|.. .+++++|+..|++..+. .+...+..+...|.. .|++++|++.|++.-...+...+..+...+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99998 99999999999999874 367788999999999 9999999999998822236777888888888
Q ss_pred h----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC
Q 048358 430 T----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK----HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 430 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 483 (541)
. .+++++|+..++++.+.+ ++..+..++.+|.. .+++++|...+++..+.+.
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 7 999999999999999874 56789999999999 9999999999999888764
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=3.3e-14 Score=138.26 Aligned_cols=264 Identities=13% Similarity=0.030 Sum_probs=184.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHccCChHHHHHHHHHHHHh----C-CCccHhHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDE----ISIVSVLPACAQLGSLELGEWIHMYCDKN----H-LLRRTVIC 287 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 287 (541)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|+++.|...++.+.+. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345556666777777777777766652 1122 34555666666777777777776665543 1 12234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC---------ChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVER---------DVVSWSTVIGGLANHGK-----------------AHKAIHLFHEM 341 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m 341 (541)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77778888888888888877766321 23467777888888888 88888888776
Q ss_pred HhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 342 QRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 342 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
.+. +-++ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 2346777888889999999999999888763211111 236788889999999999999998876
Q ss_pred -CCC---C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 413 -PMK---P----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE------DTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 413 -~~~---p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
... . ...++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|...+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 1 2467778888899999999999999999876433 2448888999999999999999999987
Q ss_pred hhC
Q 048358 479 RSK 481 (541)
Q Consensus 479 ~~~ 481 (541)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.3e-12 Score=115.11 Aligned_cols=207 Identities=14% Similarity=0.039 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 214 IVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
+..|..+...+...|++++|...|+++.+.. | .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHHH
Confidence 3455555566666666666666666655432 2 224455555666
Q ss_pred HHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHH
Q 048358 294 YIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANH-GKAHKAIHLFHEMQRLKVPPN-DITFIGLLSACAHTGFWNE 368 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 368 (541)
|...|++++|...++++.+ .+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665522 3455677777777888 888888888888777322233 5667777888888888888
Q ss_pred HHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 369 GLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 888888887642 445777888888888888888888888877 3233 55666667777888899999999999988
Q ss_pred ccCCCCcchHHHH
Q 048358 446 VLEPEDTGNYVLL 458 (541)
Q Consensus 446 ~~~~~~~~~~~~l 458 (541)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8888887665543
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=5.2e-14 Score=120.13 Aligned_cols=165 Identities=12% Similarity=0.141 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 425 (541)
.+...|..+...|...|++++|+..|++..+.. |.+...+..+..+|.+.|++++|...++.. ...| +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 356789999999999999999999999999853 667888999999999999999999999988 3334 567778888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGD 505 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (541)
..+...++++.|...++++.+..|.++.++..++.+|.+.|++++|++.+++..+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------------------------- 135 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS------------------------- 135 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-------------------------
Confidence 8899999999999999999999999999999999999999999999999999875
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 506 DTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 506 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
.+|+++.++..+|.+|..+|+.++|++.++++|+
T Consensus 136 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 136 -IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999999988764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=4.8e-14 Score=139.18 Aligned_cols=206 Identities=9% Similarity=-0.049 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH-HHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI-NQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
++.+...+....... +.+...+..+...|...|++ ++|.+.|++..+ .+..+|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444333221 23455555566666666666 666666655522 2344556666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc--------CCHH
Q 048358 341 MQRLKVPPNDITFIGLLSACAHT---------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA--------GRLD 403 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 403 (541)
..+.. |+...+..+..++... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55542 4455555555556555 66666666666655532 33455555555555555 5555
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 404 QALNIIEEM-PMKP----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 404 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
+|++.|++. .+.| +...|..+..++...|++++|+..|+++++.+|+++..+..++.++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555554 3233 44555555555555555555555555555555555555555555555555555555443
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=6.1e-14 Score=132.04 Aligned_cols=264 Identities=14% Similarity=0.040 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCC-ccHhHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPD----EISIVSVLPACAQLGSLELGEWIHMYCDKN----HLL-RRTVIC 287 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 287 (541)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344566777778888888887777653 222 245666677777778888877777765543 111 224567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 048358 288 NALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGK--------------------AHKAIHLF 338 (541)
Q Consensus 288 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 338 (541)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7788888888888888888877632 12 3367778888888888 88888888
Q ss_pred HHHHhC----CCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhHHHHHHHHHHhcCCHHHHHHHH
Q 048358 339 HEMQRL----KVP-PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEHYGCLVDLLGRAGRLDQALNII 409 (541)
Q Consensus 339 ~~m~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 409 (541)
++.... +-. .....+..+...+...|++++|...+++..+.....+ ...++..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 111 1234677788889999999999999988865321111 1336788899999999999999999
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHH
Q 048358 410 EEM-PM---KPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 410 ~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
++. .. .++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876 11 112 5667778888999999999999999998765332 447889999999999999999999
Q ss_pred HHhhhC
Q 048358 476 KLIRSK 481 (541)
Q Consensus 476 ~~m~~~ 481 (541)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=1.9e-11 Score=124.04 Aligned_cols=409 Identities=10% Similarity=-0.004 Sum_probs=281.3
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCC---hhHHHHHHHHhhhCC
Q 048358 34 HTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHL---YGLAINLYKQMLRDP 107 (541)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~~ 107 (541)
++..+... +-|...|..+++.+.+.+.++.+..+|+++.. .....|...+..-.+.|+ ++.+..+|++.+...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 34444443 56899999999999999999999999999875 355678888888888898 999999999998864
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCCc--------hHHHHHHHHHHHh-CC-CCc-hhhHHHHHHHHHc---------CCC
Q 048358 108 RTGSLILPDKFTLPFVIKSCAGLLCP--------SLGKQIHAHVCKF-GL-KSH-SITENALLDLYGK---------CDE 167 (541)
Q Consensus 108 ~~~~~~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~l~~~~~~---------~g~ 167 (541)
. .+|+...|..-+....+.++. +...++|+.++.. |. .++ ...|...+..... .++
T Consensus 134 ~----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 134 L----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp S----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 1 038888888877766655543 3345777777654 65 454 4677777765443 345
Q ss_pred hHHHHHHHhhcCC-CCh---hhHH---HHHHHH----------HhcCCHHHHHHHHhc-------CCC------------
Q 048358 168 LIEAHKVFEEMTD-RDI---VAWN---NLISGY----------ARLGQMKKARMLFDK-------MPY------------ 211 (541)
Q Consensus 168 ~~~A~~~~~~~~~-~~~---~~~~---~l~~~~----------~~~~~~~~A~~~~~~-------~~~------------ 211 (541)
++.+..+|++... |.. ..|. .+.... -...+++.|...+.. +..
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7789999999876 311 2222 111111 001123334444432 111
Q ss_pred --C--C------cchHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHH-HHHH
Q 048358 212 --T--T------IVSWTAMISGYTHIG-------SYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGE-WIHM 273 (541)
Q Consensus 212 --~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~ 273 (541)
| + ...|...+..--..+ ..+.+..+|++.+... +-+...|...+.-+...|+.+.|. .+++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0 0 124555554433332 1234566788877652 446667777777777888888886 9999
Q ss_pred HHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-------------CC------------hhHHHHHHHHHHhc
Q 048358 274 YCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-------------RD------------VVSWSTVIGGLANH 328 (541)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~ 328 (541)
..... ++.+...|...+....+.|++++|..+|+.+.+ |+ ..+|...+....+.
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 88864 355677788888889999999999999988753 21 23577777777788
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 329 GKAHKAIHLFHEMQRL-KVPPNDITFIGLLSACAH-TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
|+.+.|..+|.+..+. + .+....|...+..-.+ .++++.|..+|+...+.. +.+...|..++......|+.+.|.
T Consensus 448 ~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999998876 3 2233444433333233 355899999999998863 556677788888888899999999
Q ss_pred HHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 407 NIIEEM-PMKP----DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 407 ~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
.+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999987 3333 346788888888889999999999999999998864
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=3.3e-13 Score=133.19 Aligned_cols=212 Identities=11% Similarity=0.007 Sum_probs=181.4
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHH
Q 048358 228 GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSL-ELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQL 306 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 306 (541)
+.+++++..+++..... +.+...+..+...+...|++ ++|...++.+.+.. +.+...|..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34778888888766542 44777888889999999999 99999999999876 34578999999999999999999999
Q ss_pred HHccC--CCChhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHH
Q 048358 307 FDQMV--ERDVVSWSTVIGGLANH---------GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT--------GFWN 367 (541)
Q Consensus 307 ~~~~~--~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 367 (541)
|++.. .|+...+..+...|... |++++|+..|++..+.. +.+...+..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99984 46778888899999999 99999999999999875 56788899999999988 9999
Q ss_pred HHHHHHHHhhhhcCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 048358 368 EGLMYFDSMKRDHHIE---HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAME 442 (541)
Q Consensus 368 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (541)
+|+..|++..+.. + .+...|..+..+|...|++++|.+.|++. ...| +...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999852 3 47888999999999999999999999988 4556 56778888888999999999988665
Q ss_pred HH
Q 048358 443 HL 444 (541)
Q Consensus 443 ~~ 444 (541)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2.4e-14 Score=139.30 Aligned_cols=269 Identities=13% Similarity=0.038 Sum_probs=210.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc---HhHHHHHHHHHHhcCCHHHHHHHHHccCC---------CChhHH
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR---TVICNALIEMYIKCGCINQASQLFDQMVE---------RDVVSW 318 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 318 (541)
.+..+...+...|+++.|...++.+.+...... ..++..+...|...|++++|...|++..+ ....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344556678899999999999999998753321 24788899999999999999999987733 134578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCc-----------------HHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRL----K-VPPNDITFIGLLSACAHTGF-----------------WNEGLMYFDSM 376 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 376 (541)
..+...|...|++++|...+++.... + .+....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999987653 1 12234577888889999999 99999998887
Q ss_pred hhhc---CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC---CC----HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 048358 377 KRDH---HI-EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK---PD----AKIWGSLLSSCRTYSNLEIAVIAMEHL 444 (541)
Q Consensus 377 ~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (541)
.+.. +. +.....+..+...|...|++++|.+.+++. .+. ++ ..++..+...+...|++++|+..++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5421 11 123457888999999999999999999887 211 22 237788888899999999999999999
Q ss_pred hccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHH
Q 048358 445 LVLEPED------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLL 518 (541)
Q Consensus 445 ~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 518 (541)
++..+.. ..++..++.+|...|++++|...+++........ ...+....++..+
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~l 349 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--------------------GDRIGEARACWSL 349 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------------CChHHHHHHHHHH
Confidence 9876533 5688899999999999999999999986542110 1124456789999
Q ss_pred HHHHHHHhcccCCcccccccC
Q 048358 519 ELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 519 ~~~~~~~~~~~~a~~~~~~~i 539 (541)
+.+|..+|+.++|.+.+++++
T Consensus 350 a~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999887764
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=2.3e-13 Score=131.91 Aligned_cols=294 Identities=11% Similarity=0.037 Sum_probs=180.9
Q ss_pred CchhhHHHHHHHHHcCCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 048358 150 SHSITENALLDLYGKCDELIEAHKVFEEMTD--RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHI 227 (541)
Q Consensus 150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (541)
.....+......+...|++++|...|++..+ |+.... -..+|..+..++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~l~~~~~~~ 60 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------------------LSAIYSQLGNAYFYL 60 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH--------------------------HHHHHHHHHHHHHHh
Confidence 3344555566667777777777777766543 211000 012344444444455
Q ss_pred CChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCC----C-ccHhHHHHHHHHHHhc
Q 048358 228 GSYAEALDVFRQMQMV----GIEP-DEISIVSVLPACAQLGSLELGEWIHMYCDKNHL----L-RRTVICNALIEMYIKC 297 (541)
Q Consensus 228 g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~ 297 (541)
|++++|...+++.... +-.| ...++..+...+...|+++.|...+..+.+... + ....++..+...|...
T Consensus 61 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 5555555544443321 1011 122334444445555555555555544433210 0 1133566666677777
Q ss_pred CC--------------------HHHHHHHHHccCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C
Q 048358 298 GC--------------------INQASQLFDQMVE-----R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-P 347 (541)
Q Consensus 298 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~ 347 (541)
|+ +++|...+.+..+ . ...++..+...|...|++++|...+++..+... .
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 77 7777766665422 1 234677788888888999999988888765310 1
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CC
Q 048358 348 PN----DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-P---MK 415 (541)
Q Consensus 348 p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~ 415 (541)
++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++. . ..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 236778888899999999999999887653211111 556788899999999999999998876 1 11
Q ss_pred CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHH
Q 048358 416 PD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 416 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~ 469 (541)
++ ..++..+...+...|++++|...++++++.. +....++..++.++...|+..
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 22 5677788888999999999999999998763 223557888888888888763
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.1e-13 Score=130.38 Aligned_cols=269 Identities=11% Similarity=0.022 Sum_probs=207.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc---HhHHHHHHHHHHhcCCHHHHHHHHHccCC-----C----ChhHH
Q 048358 251 SIVSVLPACAQLGSLELGEWIHMYCDKNHLLRR---TVICNALIEMYIKCGCINQASQLFDQMVE-----R----DVVSW 318 (541)
Q Consensus 251 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 318 (541)
.+......+...|+++.|...++.+.+...... ..++..+...|...|++++|...+++..+ + ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455678899999999999999998753321 46788899999999999999999987632 1 24578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCc--------------------HHHHHHHH
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKV-PPN----DITFIGLLSACAHTGF--------------------WNEGLMYF 373 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 373 (541)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999998765310 112 3377788888999999 99999999
Q ss_pred HHhhhhc---C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 374 DSMKRDH---H-IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM---KPD----AKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 374 ~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
++..... + .+.....+..+...+...|++++|.+.+++. .. .++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8775421 1 1122456788899999999999999999886 11 122 347788888899999999999999
Q ss_pred HHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHH
Q 048358 442 EHLLVLEPED------TGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIF 515 (541)
Q Consensus 442 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 515 (541)
+++++..+.. ..++..++.+|...|++++|...+++........ ...+....++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~ 306 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------------KDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--------------------CCcHHHHHHH
Confidence 9998765443 5688899999999999999999999886542110 0123446678
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048358 516 WLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 516 ~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++.+|..+|+.++|.+.+++++
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999888765
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=2.7e-11 Score=112.53 Aligned_cols=218 Identities=9% Similarity=0.053 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCccHhHHHHHHHHHHh
Q 048358 231 AEALDVFRQMQMVGIEPDEISIVSVLPACA-------QLGSL-------ELGEWIHMYCDKNHLLRRTVICNALIEMYIK 296 (541)
Q Consensus 231 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (541)
++|...|++.+... +-+...|..+...+. ..|+. ++|..+|+.+.+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766542 334444544444443 23554 6666666666653223345566666777777
Q ss_pred cCCHHHHHHHHHccCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 048358 297 CGCINQASQLFDQMVE--R-DVV-SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC-AHTGFWNEGLM 371 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 371 (541)
.|++++|..+|+++.+ | +.. +|..++..+.+.|++++|..+|++..+.. +++...|...+... ...|+++.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766633 2 232 56666666666777777777777776654 33444443333222 12567777777
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P---MKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666542 345566666666666777777777777665 2 233 24566666666666677777777777777
Q ss_pred ccCCCCc
Q 048358 446 VLEPEDT 452 (541)
Q Consensus 446 ~~~~~~~ 452 (541)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 6666644
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=2e-12 Score=124.36 Aligned_cols=221 Identities=10% Similarity=0.017 Sum_probs=139.3
Q ss_pred HHccCChHHHHHHHHHHHHh----CCCc-cHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----C-----ChhHHHHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKN----HLLR-RTVICNALIEMYIKCGCINQASQLFDQMVE-----R-----DVVSWSTVIG 323 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~ 323 (541)
+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+.+..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44455555555555555442 1111 234566666677777777766666665521 1 1235667777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCC-CCcHhHHHHHHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKV-PPN----DITFIGLLSACAHTGFWNEGLMYFDSMKRD---HHI-EHKIEHYGCLVD 394 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~ 394 (541)
.|...|++++|...|++..+..- .++ ..++..+..+|...|++++|+..+++..+. .+. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777888888877777654210 011 136677777788888888888888777651 112 334566777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 395 LLGRAGRLDQALNIIEEM-PM-----KPD-AKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|+..+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 888888888888887775 11 121 2334556666777777 77777777765 2224445577788888888
Q ss_pred cCCHHHHHHHHHHhhh
Q 048358 465 HGRWEDVSRMRKLIRS 480 (541)
Q Consensus 465 ~g~~~~A~~~~~~m~~ 480 (541)
.|++++|...+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888888764
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=2.5e-12 Score=113.78 Aligned_cols=206 Identities=10% Similarity=-0.025 Sum_probs=126.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE----RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLS 358 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 358 (541)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 445666666677777777777777766522 455555556666667777777777777766654 334556666666
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHHIEHKI-------EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD---AKIWGSLLSS 427 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 427 (541)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 6777777777777777666542 2333 34555666666666666666666665 44554 2444445444
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDT 507 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (541)
+.. .+...++++..+.+.++..+... .....+.+++|...+++..+ +
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~--------------------------l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT--------------------------L 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------------------------H
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh--------------------------c
Confidence 433 23344555555555544333322 23344556999999988866 4
Q ss_pred CCChhHHHHHHHHHHHH
Q 048358 508 KPFLKDIFWLLELLALH 524 (541)
Q Consensus 508 ~p~~~~~~~~l~~~~~~ 524 (541)
+|++..+...|+.+...
T Consensus 210 ~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp CTTCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 68888888888877643
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.6e-12 Score=125.09 Aligned_cols=224 Identities=5% Similarity=-0.081 Sum_probs=176.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC-----CHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVE-----R----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PP-----NDITF 353 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-----~~~~~ 353 (541)
.....+...|++++|...|++..+ + ...++..+...|...|++++|...+++..+.-- .+ ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 367778899999999999998744 2 235788899999999999999999998765310 11 23577
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-C-CHHHH
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEHYGCLVDLLGRAGRLDQALNIIEEM-P-----MK-P-DAKIW 421 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~-p-~~~~~ 421 (541)
..+..+|...|++++|...|++..+...-.+ ...++..+...|...|++++|.+.+++. . .. | ...++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8888999999999999999998875321111 1247888999999999999999998876 2 22 4 35678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccC-----CCCcchHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCccCCceeEEE
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLE-----PEDTGNYVLLSNIYAKHGR---WEDVSRMRKLIRSKSMKKTPGCSLIE 493 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~~ 493 (541)
..+...+...|++++|...++++++.. |.....+..++..|...|+ +++|..++++. +
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~----------- 333 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M----------- 333 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c-----------
Confidence 888899999999999999999999763 3333346778999999999 77777777765 1
Q ss_pred EcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 494 VNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 494 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..|....++..|+.+|..+|+.++|.+.+++++
T Consensus 334 -------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 334 -------------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245667889999999999999999999887764
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=4.2e-13 Score=137.72 Aligned_cols=163 Identities=19% Similarity=0.226 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
..+|+.|...|...|++++|+..|++.++.. +-+..++..+..+|.+.|++++|++.|++..+.. +.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4567777777777777777777777777654 4445667777777777777777777777776642 445666777777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 777777777777777766 4445 45667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhh
Q 048358 473 RMRKLIRS 480 (541)
Q Consensus 473 ~~~~~m~~ 480 (541)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=1.4e-12 Score=133.93 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=149.4
Q ss_pred CccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048358 281 LRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLL 357 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 357 (541)
+.+..+++.|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34577899999999999999999999998844 367899999999999999999999999999875 55678999999
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 048358 358 SACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 358 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 435 (541)
.++...|++++|++.|++..+.. +.+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999998853 556888999999999999999999999987 6667 5788999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 048358 436 IAVIAMEHLLVLEPE 450 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~ 450 (541)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=126.28 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=122.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-
Q 048358 215 VSWTAMISGYTHIGSYAEALDVFRQMQMV-------GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKN------HL- 280 (541)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 280 (541)
.++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|+++.|...++.+.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56777888888888888888888887753 11222334455555556666666666666555443 11
Q ss_pred CccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCCHHHH
Q 048358 281 LRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL------KV-PPNDITF 353 (541)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~ 353 (541)
+....++..+... |...|++++|...++++.+. +- +.....+
T Consensus 108 ~~~~~~~~~l~~~-------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVL-------------------------------YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHH-------------------------------HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1123334444444 44445555555444444332 11 1122344
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhh------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CCCC
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRD------HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P---------MKPD 417 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~ 417 (541)
..+...+...|++++|..+++++... ...+....++..+...|...|++++|.+.++++ . ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 55555556666666666666555442 001122344555666666666666666665554 1 0111
Q ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 418 -------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 418 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111222223344455566666677777777777778888888888888888888888887654
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=3.7e-12 Score=118.32 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHhCCCccHhHHHHHHHHHH-------hcCCH-------HHHHHHHHccCC---C-ChhHHHHHHHHHHh
Q 048358 266 ELGEWIHMYCDKNHLLRRTVICNALIEMYI-------KCGCI-------NQASQLFDQMVE---R-DVVSWSTVIGGLAN 327 (541)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 327 (541)
+.|...|+.+.+.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 556778888888776 35886 899999998754 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH-hcCCHHH
Q 048358 328 HGKAHKAIHLFHEMQRLKVPPN-DI-TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG-RAGRLDQ 404 (541)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 404 (541)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 78899999999999999999999998742 445555554444322 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL---EPE-DTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
|.++|++. ...| +...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3334 6788999999999999999999999999986 343 5678999999999999999999999998
Q ss_pred hhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHH
Q 048358 479 RSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLE 519 (541)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 519 (541)
.+........... ........-..++|+++..+..||
T Consensus 268 ~~~~p~~~~~~~~----~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 268 FTAFREEYEGKET----ALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHTTTTTSSCHH----HHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHcccccccchH----HHHHHHHHhcccCCCCHHHHHhcC
Confidence 8765432211100 000011122257888888776554
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=8.1e-12 Score=106.22 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 3444445555555555555555554432 3344555555666666666666666666665532 344555666666666
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 398 RAGRLDQALNIIEEM-PMK-PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
..|++++|.+.++++ ... .+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777666665 222 355667777777778888888888888888888888888888888888888888888888
Q ss_pred HHhhhC
Q 048358 476 KLIRSK 481 (541)
Q Consensus 476 ~~m~~~ 481 (541)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877654
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=127.33 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=125.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--------R---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL------K 345 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 345 (541)
+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355666677777777777777777766533 1 2335556666666667777777766666542 1
Q ss_pred C-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 048358 346 V-PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-----H-IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM--- 414 (541)
Q Consensus 346 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 414 (541)
- +....++..+...+...|++++|...++++.+.. + .+.....+..+...+...|++++|.++++++ ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1223455566666666666666666666665421 1 1222344555556666666666666655554 11
Q ss_pred -----CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc---------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 415 -----KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL---------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 415 -----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.| ...++..+...+...|++++|...++++++. .+.....+..+...+...+....+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 258 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT------- 258 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C-------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH-------
Confidence 22 1234455555556666666666666665542 1222222222222222111111100
Q ss_pred hCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 480 SKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
........+......+|....++..++.+|..+|+.++|.+.+++++
T Consensus 259 -------------~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 259 -------------SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -------------CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01111222223334689999999999999999999999999988765
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=9.1e-10 Score=111.73 Aligned_cols=401 Identities=9% Similarity=0.019 Sum_probs=275.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCC---chHHHHHHHHHHHhCC-CC
Q 048358 75 PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLC---PSLGKQIHAHVCKFGL-KS 150 (541)
Q Consensus 75 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~ 150 (541)
.|..+|..++..+.+.+.++.+..+|+++...- |.....|..-+..-.+.++ .+.+..+|+..+...+ +|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f------P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF------PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 578899999999999999999999999999874 6667788888888888888 9999999999988642 47
Q ss_pred chhhHHHHHHHHHcCCCh--------HHHHHHHhhcC------CC-ChhhHHHHHHHHH---------hcCCHHHHHHHH
Q 048358 151 HSITENALLDLYGKCDEL--------IEAHKVFEEMT------DR-DIVAWNNLISGYA---------RLGQMKKARMLF 206 (541)
Q Consensus 151 ~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~A~~~~ 206 (541)
+...|...+....+.++. +...++|+... .+ +...|...+.... ..++++.+.++|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 888888877766655543 33446676532 23 3457777776543 344578899999
Q ss_pred hcCCCCCc----chHH---HHHHHHH----------hcCChHHHHHHHHHHHHC--CCC---------------C-----
Q 048358 207 DKMPYTTI----VSWT---AMISGYT----------HIGSYAEALDVFRQMQMV--GIE---------------P----- 247 (541)
Q Consensus 207 ~~~~~~~~----~~~~---~l~~~~~----------~~g~~~~A~~~~~~m~~~--~~~---------------p----- 247 (541)
++...... .+|. .+..... ...+++.|...+.++... ++. |
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 88764211 2222 2222110 011234445555443221 111 1
Q ss_pred Ch---HHHHHHHHHHHccC-------ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH-HHHHccCC---C
Q 048358 248 DE---ISIVSVLPACAQLG-------SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS-QLFDQMVE---R 313 (541)
Q Consensus 248 ~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~ 313 (541)
+. ..|...+.---..+ ..+.+..+|++++... +....+|...+..+...|+.++|. .+|+.... .
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 00 12333332222221 1234556788777753 456888998999999999999996 99988743 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHhccCcHHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLK---------VPPN------------DITFIGLLSACAHTGFWNEGLMY 372 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~ 372 (541)
+...|-..+...-..|+++.|..+|+++.... -.|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55567778888889999999999999987631 0132 23577777777788999999999
Q ss_pred HHHhhhhcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 373 FDSMKRDHHIEHKIEHYGCLVDLLGRA-GRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
|..+.+.. .......|...+..-.+. ++.+.|.++|+.. ..-| +...|...+......|+.+.|..+|+++++..|
T Consensus 457 f~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99998741 112334454444444454 4589999999987 2233 566677788878889999999999999999877
Q ss_pred C---CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 450 E---DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 450 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+ ....|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3 456888888888899999999999999987643
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=2e-11 Score=107.92 Aligned_cols=206 Identities=11% Similarity=0.035 Sum_probs=163.2
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHH
Q 048358 247 PDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIG 323 (541)
Q Consensus 247 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 323 (541)
.|...+......+...|++++|...|..+.+...+++...+..+..++...|++++|...|++..+ | +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999988657777787899999999999999999998844 3 4568889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC--cHhHHHHHHH
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPND-------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH--KIEHYGCLVD 394 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 394 (541)
+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|+++.+.. +. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 9999999999999999998864 4445 457788888999999999999999998742 33 4677888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PM-KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
.|...|+. .++++ .+ ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88766643 23332 11 12344444433 34567799999999999999999988887776654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=2.5e-10 Score=109.16 Aligned_cols=261 Identities=12% Similarity=-0.027 Sum_probs=161.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCC---c--cHhHHHHH
Q 048358 220 MISGYTHIGSYAEALDVFRQMQMVGIEPDEI----SIVSVLPACAQLGSLELGEWIHMYCDKNHLL---R--RTVICNAL 290 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 290 (541)
....+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+......... + ...++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556677777777777766543111211 3344445566677777777777666542111 1 12235566
Q ss_pred HHHHHhcCCHHHHHHHHHccCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 048358 291 IEMYIKCGCINQASQLFDQMVE----------R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVP--P--NDITFIG 355 (541)
Q Consensus 291 ~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~ 355 (541)
...+...|++++|...+++..+ + ...++..+...+...|++++|...+++.....-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7777778888888777766522 1 1234556677778888888888888877653211 1 2245666
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYG-----CLVDLLGRAGRLDQALNIIEEM-PMKPD-----AKIWGSL 424 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l 424 (541)
+...+...|++++|...++..............+. ..+..+...|++++|...+++. ...|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888887764311111111111 2334467888888888888877 22221 2345666
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPE------DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
...+...|++++|...++++.+..+. ....+..++.++...|++++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67788888888888888887764322 123666778888888888888888887654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=5.3e-11 Score=114.10 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-C
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE-----R-----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPP-N 349 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 349 (541)
.++..+...|...|+++.|...+.+..+ + ...+++.+...|...|++++|.+.|++..+. +-++ .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3555566666666666666665555421 1 1235666777777777777777777766542 1111 1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRD---HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM----PM--KPD-AK 419 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~ 419 (541)
..++..+..+|...|++++|+..+++.... .+.+....++..+...|.+.|++++|...+++. .. .|. ..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 235666777777778888888877777651 012333566777777888888888888877765 11 222 23
Q ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 420 IWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 420 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..+...+...++ +++|+..+++.. ..|.....+..++..|...|++++|...+++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555666777 677777766621 1233445677788888888888888888877654
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=5.2e-11 Score=107.66 Aligned_cols=217 Identities=9% Similarity=-0.017 Sum_probs=141.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--R-D---VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV--PPNDITFI 354 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~ 354 (541)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666666777777777777766643 2 2 34566666666777777777777776666420 11133455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048358 355 GLLSACAH--------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLS 426 (541)
Q Consensus 355 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 426 (541)
.+..++.. .|++++|+..|+++.+.. |.+......+.......++. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55566665 667777777777666542 22222222211111100000 112456777
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCccCCceeEEE
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIYAKH----------GRWEDVSRMRKLIRSKSMKKTPGCSLIE 493 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 493 (541)
.+...|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999884 45889999999877 999999999999876432
Q ss_pred EcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 494 VNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 494 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.+|....+...++.++..+++.+++.....+..
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 259 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTELEGDASLAQGQR 259 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHHHTCTTCCCCGG
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHhhhhhHHhhhcc
Confidence 234446778899999999999988877665433
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=7.1e-11 Score=100.29 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=145.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSAC 360 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 360 (541)
...+..+...+...|++++|...++++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788899999999999999999865 366788889999999999999999999998875 56778888999999
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 567788899999999999999999999987 3334 6788889999999999999999
Q ss_pred HHHHHHhccCCCCcch
Q 048358 439 IAMEHLLVLEPEDTGN 454 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~ 454 (541)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=3.1e-12 Score=104.67 Aligned_cols=144 Identities=15% Similarity=0.019 Sum_probs=116.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN 433 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 433 (541)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445566778899999988887753 2334556677889999999999999999887 5556 57888889899999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH-HHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChh
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRM-RKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLK 512 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 512 (541)
+++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++..+ ++|+++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--------------------------l~P~~~ 134 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--------------------------LFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--------------------------HSTTCH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------hCcCCH
Confidence 99999999999999999999999999999999998876654 576654 478999
Q ss_pred HHHHHHHHHHHHHhc
Q 048358 513 DIFWLLELLALHQDR 527 (541)
Q Consensus 513 ~~~~~l~~~~~~~~~ 527 (541)
.++...+.++...|+
T Consensus 135 ~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 135 AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999888775
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=1.6e-12 Score=118.97 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhh------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC--------C
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRD------HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM--------K 415 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~ 415 (541)
.++..+...|...|++++|...++++.+. ...+....++..+...|...|++++|.+.+++. .. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444455555555555555444432 001122334445555555555555555555443 11 1
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC----
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL--------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS---- 482 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---- 482 (541)
| ...++..+...+...|++++|+..++++++. .|....++..++.+|...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 2344455555555556666666665555554 33334455556666666666666666655554320
Q ss_pred ---CccCCceeE----------------EEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 483 ---MKKTPGCSL----------------IEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 483 ---~~~~~~~~~----------------~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
..+.....| .........+......+|....++..|+.+|..+|+.++|...++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000000000 0011111112222246788889999999999999999999999988764
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=5.6e-11 Score=113.91 Aligned_cols=226 Identities=7% Similarity=-0.030 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-CHH
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KV-PP-NDI 351 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~ 351 (541)
+......+...|++++|...|++..+ ++ ..++..+...|...|+++.|...+++..+. +- .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34456677889999999999988743 22 347888899999999999999999987652 10 11 245
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCC-HHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIE-HKIEHYGCLVDLLGRAGRLDQALNIIEEM-P-----MKPD-AKI 420 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~ 420 (541)
++..+..+|...|++++|.+.|++..+.. +.+ ....++..+...|...|++++|.+.+++. . ..|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 67788899999999999999998887531 111 12356788999999999999999999887 2 3343 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCccCCceeEE
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPE-----DTGNYVLLSNIYAKHGR---WEDVSRMRKLIRSKSMKKTPGCSLI 492 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~ 492 (541)
+..+...+.+.|++++|...++++++..+. ....+..+...|...|+ +++|...+++. +
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~---------- 330 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N---------- 330 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C----------
Confidence 788888899999999999999999986432 23356667777778888 77777777662 1
Q ss_pred EEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 493 EVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 493 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..|+....+..|+.+|..+|+.++|.+.+++++
T Consensus 331 --------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 --------------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245667788999999999999999999888765
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=3.9e-11 Score=109.94 Aligned_cols=165 Identities=10% Similarity=0.014 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLL 425 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 425 (541)
+.+...+..+...+...|++++|...|+++.+.. |.+...+..+...+.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 4455667777788888899999999999888753 556777888888999999999999999888 4567654433333
Q ss_pred H-HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeC
Q 048358 426 S-SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSG 504 (541)
Q Consensus 426 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (541)
. .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...++++...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----------------------- 248 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX----------------------- 248 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----------------------
Confidence 3 3667778888899999999999999999999999999999999999999988763
Q ss_pred CCCCCCh--hHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 505 DDTKPFL--KDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 505 ~~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
+|++ ..++..|+.++..+|+.++|+..+.+.+
T Consensus 249 ---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 249 ---DLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4655 7888999999999999888887776543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.1e-09 Score=98.70 Aligned_cols=173 Identities=12% Similarity=-0.006 Sum_probs=90.3
Q ss_pred HHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 303 ASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 303 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
|...|++... ++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444544432 3334444555556666666666666666555431 12344555556666666666666666666654
Q ss_pred hcCCCC-----cHhHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Q 048358 379 DHHIEH-----KIEHYGCLVDL--LGRAG--RLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL- 447 (541)
Q Consensus 379 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 447 (541)
. .| +..+...++.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 34 23333444433 22223 566666666666 33344222233333556666666666666655544
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 448 ---------EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 448 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+|.++.++..++.+....|+ +|.++++++.+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 35566666555555555555 56666666554
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=6.7e-09 Score=99.20 Aligned_cols=266 Identities=9% Similarity=-0.071 Sum_probs=147.4
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc----cHHHHHHHHhccCCchHHHHHHHHHHHhCCC-Cc----hh
Q 048358 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF----TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLK-SH----SI 153 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~ 153 (541)
....+...|++++|...+++...... ..+.. ++..+...+...|+++.|...+++....... .+ ..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34456678999999999988877531 12221 4555666777889999998888887764211 11 12
Q ss_pred hHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCC
Q 048358 154 TENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYT----TIVSWTAMISGYTHIGS 229 (541)
Q Consensus 154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~ 229 (541)
++..+...+...|++++|...+++.. ++......+ ...++..+...+...|+
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAF------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 34556677778888888877766532 222222221 12345566777778888
Q ss_pred hHHHHHHHHHHHHCCCC--C--ChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccH-hHHH-----HHHHHHHhcCC
Q 048358 230 YAEALDVFRQMQMVGIE--P--DEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRT-VICN-----ALIEMYIKCGC 299 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~ 299 (541)
+++|...+++.....-. + ...++..+...+...|+++.|...++........++. ..+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 88888888877654211 1 1234555556666677777777776666543211110 1111 22233556677
Q ss_pred HHHHHHHHHccCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCcHH
Q 048358 300 INQASQLFDQMVERDV-------VSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPPND-ITFIGLLSACAHTGFWN 367 (541)
Q Consensus 300 ~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~ 367 (541)
+++|...+++...++. ..+..+...+...|++++|...+++.... |.+++. ..+..+..++...|+++
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 7777766666644321 12344455555566666666655554321 111111 13333344444555555
Q ss_pred HHHHHHHHhh
Q 048358 368 EGLMYFDSMK 377 (541)
Q Consensus 368 ~a~~~~~~~~ 377 (541)
+|...++...
T Consensus 311 ~A~~~l~~al 320 (373)
T 1hz4_A 311 DAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=4.7e-11 Score=109.12 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=104.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE--------R---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL------K- 345 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~- 345 (541)
..++..+...|...|++++|...++++.+ . ...++..+...|...|++++|...+++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444555555555555555555544421 0 2234555566666666666666666655442 1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-C-----
Q 048358 346 VPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD------HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-P----- 413 (541)
Q Consensus 346 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 413 (541)
.+....++..+...+...|++++|...++++.+. ...+....++..+...|...|++++|...+++. .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1223445666666677777777777777666543 001223455666777777777777777776655 1
Q ss_pred ----CCCC-HHHHHHHHHHHhh------cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 414 ----MKPD-AKIWGSLLSSCRT------YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 414 ----~~p~-~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..+. ...|..+...... ...+..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1221 1222222222222 22233444444433333455566788888888888888888888887764
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=6.9e-11 Score=99.70 Aligned_cols=162 Identities=10% Similarity=0.051 Sum_probs=116.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-Hh
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSS-CR 429 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~ 429 (541)
.+......+...|++++|...|+...+.. |.+...+..+...+...|++++|+..+++. ...|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34556667778888888888888877643 556677888888888888888888888887 444543332222211 22
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCC
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKP 509 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 509 (541)
..+....|+..++++++.+|+++..+..++.++...|++++|...++++.+... .|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------------------------~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL------------------------GA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------------------------TT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc------------------------cc
Confidence 222334578888888888898888889999999999999999998888766421 12
Q ss_pred ChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 510 FLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.+..++..|+.++..+|+.++|+..+.+.+
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 235678888889999998888887776654
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=2.7e-11 Score=124.97 Aligned_cols=172 Identities=9% Similarity=-0.060 Sum_probs=143.2
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHH
Q 048358 326 ANHGKAHKAIHLFHEMQ--------RLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLG 397 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (541)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999988 433 5566778888889999999999999999998753 567788889999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 048358 398 RAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMR 475 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (541)
..|++++|++.|++. ...| +...+..+..++.+.|++++ +..|+++++.+|.++.+|..++.+|.+.|++++|.+.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887 5556 56778888888999999999 99999999999999999999999999999999999999
Q ss_pred HHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 476 KLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 476 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
++..+ ++|++..++..++.++...++
T Consensus 558 ~~al~--------------------------l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPP--------------------------TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCT--------------------------TSTTHHHHHHHHHHHTC----
T ss_pred Hhhcc--------------------------cCcccHHHHHHHHHHHHccCC
Confidence 88644 578888888888888766544
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=3.2e-10 Score=104.20 Aligned_cols=166 Identities=12% Similarity=0.022 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCC---CC-C-H
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVER-----D----VVSWSTVIGGLANH-GKAHKAIHLFHEMQRLKV---PP-N-D 350 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~---~p-~-~ 350 (541)
+|+.+..+|...|++++|...|++..+- + ..+++.+...|... |++++|+..|++..+... .+ . .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4555555555555555555555444220 1 23455566666664 666666666666554210 00 0 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-----
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-----EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAK----- 419 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----- 419 (541)
.++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345566666666677777777666666532111111 13455566666666777777666665 4444321
Q ss_pred -HHHHHHHHHh--hcCCHHHHHHHHHHHhccCCCC
Q 048358 420 -IWGSLLSSCR--TYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 420 -~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.+..++.++. ..+++++|+..|+++..++|..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2233344442 3455666666666666655544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=2.9e-10 Score=102.70 Aligned_cols=167 Identities=9% Similarity=0.047 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC-HH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGRAGRLDQALNIIEEM-PM---KPD-AK 419 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-~~ 419 (541)
.+...+..+...+...|++++|+..|+.+.+.. |.+ ...+..+..+|.+.|++++|+..|++. .. .|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345556666666777777777777777776642 223 456667777777777777777777776 22 222 34
Q ss_pred HHHHHHHHHhh--------cCCHHHHHHHHHHHhccCCCCcchH-----------------HHHHHHHHhcCCHHHHHHH
Q 048358 420 IWGSLLSSCRT--------YSNLEIAVIAMEHLLVLEPEDTGNY-----------------VLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 420 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~ 474 (541)
.+..+..++.. .|++++|+..|+++++..|+++... ..++.+|.+.|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56666666766 8888999999999888888887766 7779999999999999999
Q ss_pred HHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHH----------hcccCCcccccccC
Q 048358 475 RKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQ----------DRAKDVIDIMYEDI 539 (541)
Q Consensus 475 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~i 539 (541)
++++.+... .+|....++..++.+|..+ |+.++|++.+.+.|
T Consensus 171 ~~~~l~~~p-----------------------~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 171 YEAVFDAYP-----------------------DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHCT-----------------------TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-----------------------CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 999876432 1344678999999999988 77788888877665
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=2.1e-11 Score=99.62 Aligned_cols=143 Identities=10% Similarity=0.008 Sum_probs=114.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC
Q 048358 322 IGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR 401 (541)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (541)
...+...|++++|+..++...... +-+...+..+...|...|++++|++.|++..+.. |.+...|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 344556678888888888876643 3334566778888999999999999999988753 5677888999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHH-HHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 402 LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIA-MEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+++|+..|++. .+.| +..++..+...+.+.|++++|... ++++++++|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999887 5566 567888888899999998776655 699999999999999999999988875
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=4.2e-10 Score=103.49 Aligned_cols=227 Identities=8% Similarity=0.024 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHcc--C-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEISIVSVLPACAQL--G-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFD 308 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 308 (541)
+|.+++++..+.- +++...+ .+ .+. + +++.|...+..+ +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4566666666542 3322222 22 222 2 477777766654 456788899999999888
Q ss_pred ccCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHH
Q 048358 309 QMVER-----D----VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV---PPN--DITFIGLLSACAHT-GFWNEGLMYF 373 (541)
Q Consensus 309 ~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~a~~~~ 373 (541)
+..+- + ..+|+.+..+|...|++++|+..|++..+... .+. ..++..+...|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 76331 2 45889999999999999999999998765310 111 35788889999996 9999999999
Q ss_pred HHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHhhcCCHHHHHHH
Q 048358 374 DSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA--------KIWGSLLSSCRTYSNLEIAVIA 440 (541)
Q Consensus 374 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~ 440 (541)
++..+...-..+ ..++..+...+.+.|++++|+..|++. ...|+. ..|..+..++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998764210111 356888999999999999999999987 333321 2567788889999999999999
Q ss_pred HHHHhccCCCCcch-----HHHHHHHHH--hcCCHHHHHHHHHHhh
Q 048358 441 MEHLLVLEPEDTGN-----YVLLSNIYA--KHGRWEDVSRMRKLIR 479 (541)
Q Consensus 441 ~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 479 (541)
+++++++.|..... +..++..+. ..+++++|+..++.+.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 99999999876543 444566665 4567888888886653
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=3.2e-09 Score=95.66 Aligned_cols=179 Identities=9% Similarity=-0.006 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 268 GEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER-----DVVSWSTVIGGLANHGKAHKAIHLFHEMQ 342 (541)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 342 (541)
+...++.....+ +++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666555544 344555567888888999999999999887443 44567778889999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--Hhc--cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 343 RLKVPP-----NDITFIGLLSA--CAH--TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 343 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
+. .| +..+...++.+ ... .+++..|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 56 35666666666 333 34899999999998764 354333344455899999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 413 PM----------KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 413 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.. .| ++.++..++......|+ +|.++++++.+..|+++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 22 25 55666577766666777 8999999999999998743
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=1.6e-10 Score=119.32 Aligned_cols=169 Identities=11% Similarity=-0.062 Sum_probs=100.4
Q ss_pred HhcCCHHHHHHHHHccC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048358 295 IKCGCINQASQLFDQMV-----------ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT 363 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 363 (541)
...|++++|.+.+++.. ..+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666554 1244456666666666666666666666666543 34455666666666666
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAM 441 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (541)
|++++|+..|+++.+.. +.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666532 3345556666666666666666 6666655 3334 3455666666666666666666666
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 442 EHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
+++++++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666655443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.5e-09 Score=86.53 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=82.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRT 430 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 430 (541)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4444555555566666666666555431 334455555666666666666666666655 2222 45566666667777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 431 YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.|++++|...++++.+..|.++..+..++.++.+.|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777777777777777788888888888888777776653
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=3.1e-09 Score=93.51 Aligned_cols=183 Identities=15% Similarity=0.049 Sum_probs=117.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 048358 284 TVICNALIEMYIKCGCINQASQLFDQMVE--RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND----ITF 353 (541)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~ 353 (541)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 44455566777777888888888877743 32 2356667777778888888888888777643 322 134
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 048358 354 IGLLSACAH------------------TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMK 415 (541)
Q Consensus 354 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 415 (541)
..+..++.. .|++++|+..|+.+.+.. |.+...+........ .....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HHHHH---------
Confidence 444444433 355666666666665532 222222211111000 00000
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 416 PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT---GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113455668899999999999999999999876 579999999999999999999999998876543
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=1.6e-09 Score=99.24 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=142.8
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 048358 300 INQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 300 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444455555554556677788888999999999999999998875 557788889999999999999999999999874
Q ss_pred cCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--cch
Q 048358 380 HHIEHKIEH-YGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED--TGN 454 (541)
Q Consensus 380 ~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 454 (541)
.|+... .......+...++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 344332 333334466778888898888887 4455 67888999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999888754
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=5.4e-10 Score=88.02 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=86.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455667777888888888888888776 4445 56777788888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHH
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL 521 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 521 (541)
..|++++|.+.+++..+ ++|++..++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~--------------------------l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--------------------------VDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--------------------------HCcCCHHHHHHHHHh
Confidence 88888888888888765 367777777777654
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=3.5e-09 Score=84.28 Aligned_cols=131 Identities=18% Similarity=0.331 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHH
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLL 396 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (541)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887764 4566777778888888888888888888887642 45566778888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (541)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8889999998888877 3333 5677888888888999999999999998887775
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=6.7e-10 Score=97.78 Aligned_cols=187 Identities=11% Similarity=-0.019 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKV-PP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGC 391 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 391 (541)
...+..+...+...|++++|+..|+++.+... .| ....+..+..++.+.|++++|+..|+.+.+...-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667778888888888888888877531 11 13467777888888888888888888888754222221 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH----------------
Q 048358 392 LVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY---------------- 455 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------- 455 (541)
+..++...|.. .+ ..|..+...+...|++++|+..|+++++..|+++.++
T Consensus 84 ~g~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL---------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh---------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 55555443321 11 1122233344567889999999999999999887665
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCccc
Q 048358 456 -VLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534 (541)
Q Consensus 456 -~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 534 (541)
..++..|.+.|++++|...++++.+... ..|..+.++..++.+|..+|+.++|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----------------------~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYP-----------------------DTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHST-----------------------TSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCc-----------------------CCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 4678889999999999999999876421 1223347899999999999999999988
Q ss_pred cccc
Q 048358 535 MYED 538 (541)
Q Consensus 535 ~~~~ 538 (541)
++..
T Consensus 207 ~~~l 210 (225)
T 2yhc_A 207 AKII 210 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=5.4e-10 Score=96.99 Aligned_cols=161 Identities=9% Similarity=0.045 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHhccCcHHHHHHHHHHhhhh
Q 048358 316 VSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIG----------------LLSACAHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~ 379 (541)
..+......+...|++++|+..|++..+.. |-+...+.. +..++...|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667788899999999999988864 334455666 777778888888888888888764
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC--HHHHHHHHHHHhccCCCCcchH
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN--LEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
. |.+...+..+..+|...|++++|+..|++. .+.| +..++..+...+...|+ .+.+...+++.....|. ...+
T Consensus 84 ~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 A--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 3 456777778888888888888888888776 4455 45667777766654443 34455555555432221 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..++.++...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5567777777888888888887754
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.5e-08 Score=88.02 Aligned_cols=172 Identities=8% Similarity=-0.059 Sum_probs=131.2
Q ss_pred HHHHHHccC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhh
Q 048358 303 ASQLFDQMV-ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG----FWNEGLMYFDSMK 377 (541)
Q Consensus 303 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 377 (541)
|.+.|++.. ..++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444432 2466677777777777888888888888888765 55667777777777 6 8888888888886
Q ss_pred hhcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHHHh
Q 048358 378 RDHHIEHKIEHYGCLVDLLGR----AGRLDQALNIIEEM-PMKPD---AKIWGSLLSSCRT----YSNLEIAVIAMEHLL 445 (541)
Q Consensus 378 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 445 (541)
+. .+...+..|...|.. .+++++|+++|++. ...|. ...+..|...|.. .+++++|+..|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356667778888876 78899999988887 44443 7788888888877 789999999999998
Q ss_pred ccCCCCcchHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCCC
Q 048358 446 VLEPEDTGNYVLLSNIYAKH-G-----RWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 483 (541)
+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 66677899999998865 3 89999999999887764
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=4.4e-09 Score=91.15 Aligned_cols=130 Identities=9% Similarity=-0.008 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 319 STVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
..+..+|...|++++|+..|++..+.. |-+...+..+..++...|++++|+..|+++.+.. |.+...|..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 348888999999999999999998875 5677889999999999999999999999998853 5667888888888876
Q ss_pred cCC--HHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 399 AGR--LDQALNIIEEMP-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 399 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
.|+ .+.+...++... ..|....+.....++...|++++|+..|++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666663 22333345555666778899999999999999999973
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.5e-09 Score=91.41 Aligned_cols=159 Identities=9% Similarity=0.062 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH-H
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL-L 396 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 396 (541)
+..+...+...|++++|...|++..+.. |.+...+..+..++...|++++|+..++.+.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 3344555566666666666666655543 3445556666666666677777777766665532 233222222111 1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHH
Q 048358 397 GRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED--TGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 472 (541)
...+...+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|.. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223456666665 4445 57788888888999999999999999999988764 558899999999999999999
Q ss_pred HHHHHhhh
Q 048358 473 RMRKLIRS 480 (541)
Q Consensus 473 ~~~~~m~~ 480 (541)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=8e-08 Score=94.62 Aligned_cols=363 Identities=11% Similarity=-0.041 Sum_probs=183.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCC-hhHHHHHHHHhhhC-CCCCCCCCCCcccHHHH
Q 048358 48 LVTKMIDVCNSGGDLAYASLLFKQVKE--PNVFLYNAMIRAYTNNHL-YGLAINLYKQMLRD-PRTGSLILPDKFTLPFV 123 (541)
Q Consensus 48 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~-~~~~~~~~p~~~~~~~l 123 (541)
+|...+..+-. |+++.+..+|++... |++..|...+.-..+.+. .+....+|+..... |.. +++...|...
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d----~~s~~iW~~Y 91 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY----WDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC----TTCHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC----cccHHHHHHH
Confidence 34444444433 667777777777664 666677766665555442 34455666665542 210 3344555555
Q ss_pred HHHHhc----cCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCH
Q 048358 124 IKSCAG----LLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQM 199 (541)
Q Consensus 124 l~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (541)
+..+.. .++.+.+..+|+.++......-...|...... ........+.+++.+. .+.+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~-----------------~~~y 153 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT-----------------LPIF 153 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH-----------------HHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH-----------------hHHH
Confidence 554432 34566677777777663211111122211111 1111112222222110 0112
Q ss_pred HHHHHHHhcCC----CCCcchHHHHHHHHHhcC--C-----hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHH
Q 048358 200 KKARMLFDKMP----YTTIVSWTAMISGYTHIG--S-----YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 200 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
..|..+++.+. ..+...|...+..-...+ - .+.+..+|++++... +.+...|...+.-+...|+++.|
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 22222222111 112334555444432221 1 345667788877653 44566666667777778888888
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHH-HHHHHccC--C-------C---ChhHHHHHHHHHHhcCChHHHH
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQA-SQLFDQMV--E-------R---DVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
..++..+... +.+...+.. |....+.++. ..+.+... . + ....|...+....+.++.+.|.
T Consensus 233 r~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 233 KKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888877 444333332 2221111111 11111110 0 0 1234555555555667778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 336 HLFHEMQRLKVPPNDITFIGLLSACA-HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
.+|.+. ... +.+...|...+..-. ..++++.|..+|+...+.. +.++..+...++.....|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 888777 221 223333432222111 1235777888888777653 3334455666776677778888888888773
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
.....|...+..-...|+.+.+..++++..+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2466677776666667777777777777663
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=2.6e-09 Score=108.31 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 297 CGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998855 356789999999999999999999999999875 566788999999999999999999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHHhccC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY---SNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 448 (541)
++..+.. +.+...+..+...|.+.|++++|.+.|++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998853 556788999999999999999999999987 4445 577888899999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 048358 449 PEDTGNYVLLS 459 (541)
Q Consensus 449 ~~~~~~~~~l~ 459 (541)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988888776
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=1.2e-10 Score=94.71 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=87.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4567888889999999999999999988 5556 6788889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=8.1e-09 Score=95.57 Aligned_cols=219 Identities=12% Similarity=0.060 Sum_probs=150.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHH
Q 048358 226 HIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQ-LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQAS 304 (541)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 304 (541)
..|++++|.+++++..+.. +.. +.. .++++.|...|..+ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3566778888887766531 111 111 35666666655433 45667778888887
Q ss_pred HHHHccCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCcHHHH
Q 048358 305 QLFDQMVE-----RD----VVSWSTVIGGLANHGKAHKAIHLFHEMQRL----KVPPN--DITFIGLLSACAHTGFWNEG 369 (541)
Q Consensus 305 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a 369 (541)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 77776532 11 346778888888999999999998886542 2 222 3567788888888 999999
Q ss_pred HHHHHHhhhhcCCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHH
Q 048358 370 LMYFDSMKRDHHIE----HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PM---KPD----AKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 370 ~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a 437 (541)
+..|++......-. ....++..+...|.+.|++++|+..|++. .+ .++ ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887632101 11467888999999999999999999887 21 122 23566667778888999999
Q ss_pred HHHHHHHhccCCCCcch-----HHHHHHHHHhcCCHHHHHHH
Q 048358 438 VIAMEHLLVLEPEDTGN-----YVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 474 (541)
...+++++ ..|..... ...++..+ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 88865432 34455555 56777776663
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=2.8e-09 Score=86.52 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLS 426 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 426 (541)
+...+..+...+...|++++|+..|+.+.... |.+...|..+..+|...|++++|+..|++. .+.| +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34577788889999999999999999999853 667888999999999999999999999998 5556 5688999999
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCc
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
++...|++++|+..|++++++.|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999998854
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=3.2e-09 Score=92.44 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+..+...+...|++++|++.|++.- .|+...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 35667788889999999999999983 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 468 WEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 468 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
+++|...+++..+...... .. .....+...+|....++..++.+|..+|+.++|.+.++++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQ-LI---------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCS-EE---------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcc-HH---------HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999987643221 11 111222256788899999999999999999999998887654
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.98 E-value=2.2e-09 Score=87.29 Aligned_cols=108 Identities=9% Similarity=0.090 Sum_probs=88.6
Q ss_pred HHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 048358 372 YFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (541)
.|+.+... -+.+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34444432 1345666777888889999999999999887 4445 677888888889999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 450 EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+++..+..++.+|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=9.5e-09 Score=104.13 Aligned_cols=147 Identities=9% Similarity=-0.058 Sum_probs=88.0
Q ss_pred cCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 262 LGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+..+|...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777666543 23456677777777777777777777776643 24556777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA---GRLDQALNIIEEM 412 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 412 (541)
++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7776654 4455667777777777777777777777776642 34556667777777777 7777777777665
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=2.1e-07 Score=84.67 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCC-----
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWN--EGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGR----- 401 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 401 (541)
+++++++.++.++.+.. +-|..+|..-..++.+.|.++ ++++.++++.+.+ +.+...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555543 344444444444444444444 5555555555432 3344445444444444444
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH-HHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCHHHHHHH
Q 048358 402 -LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL-EIAVIAMEHLLVLE---PEDTGNYVLLSNIYAKHGRWEDVSRM 474 (541)
Q Consensus 402 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (541)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+++++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2333 455555555555555542 22444555555444 55555666666666666666666666
Q ss_pred HHHhhh
Q 048358 475 RKLIRS 480 (541)
Q Consensus 475 ~~~m~~ 480 (541)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=9.2e-09 Score=80.87 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSC 428 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 428 (541)
..+......|.+.|++++|++.|++..+.. |.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 456677888888999999999999888753 567788888999999999999999999887 4455 578899999999
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
...|++++|++.|+++++++|.++.++..|..++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999888887653
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.94 E-value=1.7e-08 Score=80.07 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=93.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
+.+...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445666777888888888888888888776 4445 56777778888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 048358 461 IYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDR 527 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 527 (541)
++.+.|++++|...+++..+. +|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--------------------------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHh--------------------------CCCchHHHHHHHHHHHHhcC
Confidence 888888888888888887652 46667778888888777653
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=2.9e-07 Score=84.48 Aligned_cols=161 Identities=7% Similarity=-0.010 Sum_probs=120.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLK-VPPNDI----TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYG 390 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 390 (541)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887743 122211 2334666777888999999999998863222222 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEMP-------MK-PD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNY 455 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 455 (541)
.+...|...|++++|+..|+++- .. +. ..++..+...|...|++++|+..+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888761 11 22 3477888889999999999999999998765322 5689
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHhhh
Q 048358 456 VLLSNIYAKHGR-WEDVSRMRKLIRS 480 (541)
Q Consensus 456 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 480 (541)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999994 6999999888754
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=2.3e-08 Score=78.96 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=83.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++++..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4455666667777777777777777765 2233 5566667777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcc
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRA 528 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 528 (541)
.+.|++++|...+++..+. +|++..++..++.++..+|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence 7778888887777776542 466667777777777777664
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=7.7e-08 Score=83.55 Aligned_cols=145 Identities=6% Similarity=-0.105 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFW 366 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 366 (541)
+..+...+...|++++|...|++...++..+|..+..+|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677777888888888887777777777777777888888888888887777654 45566777777777777777
Q ss_pred HHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 048358 367 NEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLL 445 (541)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (541)
++|+..|+...+.. +.+.... +...| +...| ....+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~--~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQL--RGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTT--TTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 77777777776532 1111000 00000 01223 23566667777777778888888888877
Q ss_pred ccCCCC
Q 048358 446 VLEPED 451 (541)
Q Consensus 446 ~~~~~~ 451 (541)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 777765
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.6e-08 Score=79.67 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456777788888889999999888887 4445 5788888888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048358 463 AKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALH 524 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 524 (541)
...|++++|...+++..+..... ...|++..+...+..+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 99999999999999887642100 1237888888888777654
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=2.5e-06 Score=77.67 Aligned_cols=230 Identities=9% Similarity=-0.037 Sum_probs=173.8
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCccHhHHHHHHHHH----Hh
Q 048358 225 THIGS-YAEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLG--SLELGEWIHMYCDKNHLLRRTVICNALIEMY----IK 296 (541)
Q Consensus 225 ~~~g~-~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 296 (541)
.+.|. .++|+..+.+++.. .|+. ..++.--..+...+ +++++...++.+.....+ +..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 34444 46788888888866 4544 34555556666677 888888888888876533 355555544444 44
Q ss_pred c---CCHHHHHHHHHccCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc---
Q 048358 297 C---GCINQASQLFDQMVE---RDVVSWSTVIGGLANHGKAH--KAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF--- 365 (541)
Q Consensus 297 ~---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 365 (541)
. +++++++.+++.+.+ .|..+|+.-.-.+...|.++ ++++.++++.+.. +-|...|+.-.......+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 4 788999999988844 46677887777778888888 9999999999886 5677788777666666666
Q ss_pred ---HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHhhcCCHHH
Q 048358 366 ---WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ-ALNIIEEM-PM----KPDAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 366 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~ 436 (541)
++++++.++.+.... +.|...|+.+...+.+.|+..+ +..+++++ .. ..+...+..+...+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 899999999988753 7788899999999999888555 55577766 22 2377889999999999999999
Q ss_pred HHHHHHHHhc-cCCCCcchHHHHHH
Q 048358 437 AVIAMEHLLV-LEPEDTGNYVLLSN 460 (541)
Q Consensus 437 a~~~~~~~~~-~~~~~~~~~~~l~~ 460 (541)
|+++++.+.+ .+|.....|...+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999996 79998888876654
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=9.8e-09 Score=95.03 Aligned_cols=196 Identities=8% Similarity=-0.007 Sum_probs=148.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHh-cCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048358 261 QLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIK-CGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFH 339 (541)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 339 (541)
..|++++|..++++..+.... . +.+ .++++.|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 356788888888887764321 1 112 5788888888765 4667888999999999999
Q ss_pred HHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 340 EMQRL----KVPP-NDITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIEH-KIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 340 ~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
+..+. +-++ -..+|..+..+|...|++++|+..|++..... +-+. ...++..+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 2111 13478888899999999999999999876531 1111 24578888999988 99999999998
Q ss_pred hC-CCCC-------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCHHHHHHHHH
Q 048358 411 EM-PMKP-------DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT------GNYVLLSNIYAKHGRWEDVSRMRK 476 (541)
Q Consensus 411 ~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 476 (541)
+. .+.| ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86 2111 146788888899999999999999999998765443 367778888889999999999999
Q ss_pred Hhh
Q 048358 477 LIR 479 (541)
Q Consensus 477 ~m~ 479 (541)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.87 E-value=4.8e-08 Score=76.33 Aligned_cols=94 Identities=19% Similarity=0.337 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
..+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|+..++++.+..|.++..+..++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34445555555555555555555554 1122 344555555555556666666666666666556555566666666666
Q ss_pred cCCHHHHHHHHHHhhh
Q 048358 465 HGRWEDVSRMRKLIRS 480 (541)
Q Consensus 465 ~g~~~~A~~~~~~m~~ 480 (541)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6666666666655543
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=1.1e-07 Score=87.15 Aligned_cols=163 Identities=7% Similarity=0.001 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC--CCc--H
Q 048358 317 SWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHI--EHK--I 386 (541)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~ 386 (541)
.+...+..+...|++++|.+.+.+..+.. +... ..+..+...+...|++++|+..+++....... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34456677788888999988888877653 2222 12344556677888999999998887642111 111 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------C
Q 048358 387 EHYGCLVDLLGRAGRLDQALNIIEEM----PMKPD-----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE------D 451 (541)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~ 451 (541)
.+|+.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|+..++++++..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999888775 11222 257888888899999999999999999875422 1
Q ss_pred cchHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 048358 452 TGNYVLLSNIYAKHGRWEDV-SRMRKLIRS 480 (541)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 480 (541)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777777643
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.7e-08 Score=81.39 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=83.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556677788888899999999998887 4445 6778888888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 048358 463 AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~ 481 (541)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=1.8e-08 Score=91.84 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=130.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048358 283 RTVICNALIEMYIKCGCINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSA 359 (541)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 359 (541)
+...+..+...+...|++++|...|++..+ | +...|..+..+|...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667777788888888888888887632 3 66778888888888899999999888888765 5567788888888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 048358 360 CAHTGFWNEGLMYFDSMKRDHHIEHKI-EHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 360 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
+...|++++|...|+...+.. |+. ..+...+....+..+...... .......++......+.. + ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 889999999999888877642 211 111112222222211111111 222232333333333322 2 368999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHhhhC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKH-GRWEDVSRMRKLIRSK 481 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 481 (541)
+.++++++.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777787777776 7899999999988764
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=8e-09 Score=88.77 Aligned_cols=145 Identities=12% Similarity=0.002 Sum_probs=101.3
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-D----------------AKIWGS 423 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ 423 (541)
..|+++.+.+.|+..... .......+..+...+.+.|++++|+..|++. ...| + ...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555433321 1223445666677777777777777777765 2222 1 267777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEe
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVS 503 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (541)
+..++...|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------------- 150 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS----------------------- 150 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------------
Confidence 888888999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcccCCccc
Q 048358 504 GDDTKPFLKDIFWLLELLALHQDRAKDVIDI 534 (541)
Q Consensus 504 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 534 (541)
.+|++..++..++.++..+++.+++...
T Consensus 151 ---~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (198)
T 2fbn_A 151 ---LNPNNLDIRNSYELCVNKLKEARKKDKL 178 (198)
T ss_dssp ---HSTTCHHHHHHHHHHHHHHHHHHC----
T ss_pred ---HCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999988888777643
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1.4e-07 Score=81.78 Aligned_cols=175 Identities=8% Similarity=-0.097 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 048358 268 GEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVE-RDVVSWSTVIGGLANHG----KAHKAIHLFHEMQ 342 (541)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 342 (541)
|.+.|....+.| ++..+..|...|...+++++|...|++..+ .++..+..|...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455554443 455666677777777777777777777644 356667777777766 5 7888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCC-CcHhHHHHHHHHHHh----cCCHHHHHHHHHhC-
Q 048358 343 RLKVPPNDITFIGLLSACAH----TGFWNEGLMYFDSMKRDHHIE-HKIEHYGCLVDLLGR----AGRLDQALNIIEEM- 412 (541)
Q Consensus 343 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 412 (541)
+.| +...+..|...|.. .+++++|+..|++..+.. .. .+...+..|...|.. .+++++|+++|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 765 55667777777776 788888888888887642 11 126677788888887 77889999988887
Q ss_pred CCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHhccCCC
Q 048358 413 PMKPDAKIWGSLLSSCRTY-S-----NLEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 413 ~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~~ 450 (541)
...++...+..|...|... | +.++|+..|+++.+.+.+
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334556677777776543 3 889999999988887643
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=7.4e-08 Score=79.77 Aligned_cols=128 Identities=12% Similarity=0.055 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSC 428 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 428 (541)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345666777778888888888888887642 456777888888888888888888888876 3334 567888888889
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHhhh
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI--YAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 480 (541)
...|++++|...++++++..|.+...+..+..+ +...|++++|...++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988888555554 7888999999999887653
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=1.1e-08 Score=95.79 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---------------HhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---------------IEHYGCLVDLLGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~- 412 (541)
+...+..+...+.+.|++++|+..|++..... +.+ ...|..+..+|.+.|++++|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456666666667777777777777666532 222 355666666666666666666666655
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHh
Q 048358 413 PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV-SRMRKLI 478 (541)
Q Consensus 413 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 478 (541)
.+.| +...|..+..++...|++++|+..|+++++++|.+..++..++.++.+.|++++| ..+++.|
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4555666666666666666666666666666666666666666666666666666 3344444
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=2.9e-06 Score=83.47 Aligned_cols=354 Identities=10% Similarity=-0.017 Sum_probs=185.8
Q ss_pred CCC-hhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC-
Q 048358 90 NHL-YGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE- 167 (541)
Q Consensus 90 ~g~-~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~- 167 (541)
.|+ ++.|..+|+.+... -|. |+.+.+..+|+..+.. .|+...|...+....+.++
T Consensus 7 ~~~~i~~aR~vyer~l~~-------~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL-------YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp -----CCHHHHHHHHHHH-------HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC--
T ss_pred cCcchHHHHHHHHHHHHH-------CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch
Confidence 444 55666666666654 222 8888888888888874 4688888877777666653
Q ss_pred hHHHHHHHhhcCC------CChhhHHHHHHHHH----hcCCHHHHHHHHhcCCCCCcc----hHHHHHHHHHhc------
Q 048358 168 LIEAHKVFEEMTD------RDIVAWNNLISGYA----RLGQMKKARMLFDKMPYTTIV----SWTAMISGYTHI------ 227 (541)
Q Consensus 168 ~~~A~~~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~------ 227 (541)
.+....+|+.... .+...|...+..+. ..++++.+.++|++....... .|......-...
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHH
Confidence 3344555555432 34566666665543 245677788888876542121 222222211111
Q ss_pred -------CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHhCCCccHhHHHHHHHH
Q 048358 228 -------GSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQL--GS-----LELGEWIHMYCDKNHLLRRTVICNALIEM 293 (541)
Q Consensus 228 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (541)
+.+..|..+++.+...--..+...|...+.--... +- .+.+..+|+.+.... +.+..+|...+..
T Consensus 144 ~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 144 KIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 12223333344333210001222333333322111 11 234556777766643 4446677777777
Q ss_pred HHhcCCHHHHHHHHHccCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---C------CCC---CHHHHHHHHHHH
Q 048358 294 YIKCGCINQASQLFDQMVE-RDVVSWSTVIGGLANHGKAHKAIHLFHEMQRL---K------VPP---NDITFIGLLSAC 360 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~------~~p---~~~~~~~l~~~~ 360 (541)
+.+.|+.+.|..+|++... |....... .|....+.++. ++.+.+. . ..+ ....|...+...
T Consensus 223 ~~~~~~~~~ar~i~erAi~~P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEMSDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 7777888888887776532 32221111 22222111221 2222211 0 001 113345555555
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG-RLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA 437 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 437 (541)
.+.++++.|..+|+.. +.. +.+...|...+..-...+ +.+.|..+|+.. ..-| +...|...+......|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5667788888888877 321 123344443333322333 578888888776 1113 234455566666777888888
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 438 VIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
..+|+++. .....|...+..-...|+.+.+..+++++..
T Consensus 374 R~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888862 3456677777777777888888887776653
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=1.1e-07 Score=74.14 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|..+++++ ...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4566777777888888888888888887642 455677788888888888888888888877 3233 56788888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988888877654
No 136
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.79 E-value=3.9e-08 Score=81.33 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-----------------
Confidence 467888888999999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEeCCCCCCChh-HHHHHHHHHHHHHhcccCCccccc
Q 048358 498 VQEFVSGDDTKPFLK-DIFWLLELLALHQDRAKDVIDIMY 536 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 536 (541)
++|+++ .+...|+.+...+++..+....+.
T Consensus 126 ---------l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~ 156 (162)
T 3rkv_A 126 ---------NHPAAASVVAREMKIVTERRAEKKADSRVTY 156 (162)
T ss_dssp ---------HCGGGHHHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888 778899999998887776665443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=6.9e-08 Score=76.14 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLS 426 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 426 (541)
+...+..+...+...|+++.|...|+...... +.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34566677777888888888888888887642 456777888888888889999998888876 3334 5678888888
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 427 SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
.+...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999888875
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.76 E-value=4.5e-08 Score=81.12 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555555666666666666666665532 334555555566666666666666655554 3333 34555555555
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
+...|++++|+..|++++++.|.++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 56666666666666666666555555443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=9.6e-08 Score=75.64 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLL 425 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 425 (541)
.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34456666677777777777777777777653 2445666777777777778888887777776 3334 567788888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.++...|++++|+..++++++..|.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999999988899999988887764
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=1.7e-08 Score=82.00 Aligned_cols=117 Identities=9% Similarity=-0.021 Sum_probs=92.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 048358 337 LFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK 415 (541)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 415 (541)
.|+++.... +.+...+..+...+...|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++. .+.
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555443 3345567777888888999999999999888753 557778888899999999999999999887 444
Q ss_pred C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 416 P-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 416 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
| +...+..+..++...|++++|+..|+++++..|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 5 5677888888999999999999999999999988776543
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=5.8e-08 Score=80.43 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=106.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+..+...+...|++++|...|++. ...| +..++..+...+...|++++|+..++++++..|.++..+..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455778888999999999999999987 3344 67888889999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHH--HHHHHhcccCCcccccc
Q 048358 464 KHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLEL--LALHQDRAKDVIDIMYE 537 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 537 (541)
+.|++++|...+++..+. +|++..++..++. .+...|+.++|++.+.+
T Consensus 93 ~~~~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999998763 5666677644444 47788888888776654
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=7.4e-08 Score=90.17 Aligned_cols=145 Identities=6% Similarity=-0.021 Sum_probs=117.3
Q ss_pred CHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVE--R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN---------------DITFIGLLSAC 360 (541)
Q Consensus 299 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~l~~~~ 360 (541)
++++|...|+...+ | +...+..+...|.+.|++++|+..|++..... +.+ ...+..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544544432 2 45678889999999999999999999998864 333 47899999999
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH-
Q 048358 361 AHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIA- 437 (541)
Q Consensus 361 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a- 437 (541)
.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++...|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 567888999999999999999999999988 5556 567888888889999999988
Q ss_pred HHHHHHHhc
Q 048358 438 VIAMEHLLV 446 (541)
Q Consensus 438 ~~~~~~~~~ 446 (541)
...++++.+
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-07 Score=76.64 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=71.2
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 384 HKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 34556666777777777777777777766 55565 46666677777777888888888888877777777777778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 048358 459 SNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+.++...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887777655
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=2.8e-07 Score=71.05 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=66.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344566666666777777777777665 2233 55666666667777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHhhh
Q 048358 464 KHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~ 480 (541)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777777654
No 145
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.5e-07 Score=71.84 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEc
Q 048358 416 PDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVN 495 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (541)
++...+..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------------- 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------
Confidence 345678888889999999999999999999999999999999999999999999999999998763
Q ss_pred CEEEEEEeCCCCCCCh------hHHHHHHHHHHHHHhcccCCcccccccCC
Q 048358 496 NEVQEFVSGDDTKPFL------KDIFWLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 496 ~~~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
+|++ ..++..++.++..+|+.++|++.+++...
T Consensus 68 ------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 68 ------------TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp ------------CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 4555 78899999999999999999998887643
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1.1e-07 Score=79.97 Aligned_cols=118 Identities=10% Similarity=0.125 Sum_probs=73.5
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCH--HH
Q 048358 362 HTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS-CRTYSNL--EI 436 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~ 436 (541)
..|++++|...++...+.. +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665532 345556666666666667777776666665 2223 44555556666 5566776 77
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 437 AVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|+..++++++.+|.++..+..++.+|...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=2e-06 Score=78.81 Aligned_cols=159 Identities=9% Similarity=0.008 Sum_probs=120.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---Chh------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 048358 289 ALIEMYIKCGCINQASQLFDQMVER---DVV------SWSTVIGGLANHGKAHKAIHLFHEMQRLKVP-PN----DITFI 354 (541)
Q Consensus 289 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 354 (541)
..+..+...|++++|..++++..+. +.. .+..+...+...+++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999887442 111 2334666777788999999999999874322 22 23688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDH----HIEH-KIEHYGCLVDLLGRAGRLDQALNIIEEM-------PMKPD-AKIW 421 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 421 (541)
.+..+|...|++++|...|+++.+.. +..+ ...++..+...|.+.|++++|++.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987421 1112 2347888999999999999999998876 12222 6788
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHHhcc
Q 048358 422 GSLLSSCRTYS-NLEIAVIAMEHLLVL 447 (541)
Q Consensus 422 ~~l~~~~~~~~-~~~~a~~~~~~~~~~ 447 (541)
..+..++.+.| ++++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 579999999998863
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=2.2e-08 Score=78.03 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 048358 388 HYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH 465 (541)
Q Consensus 388 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (541)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566778888999999999999887 4455 6788888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhC
Q 048358 466 GRWEDVSRMRKLIRSK 481 (541)
Q Consensus 466 g~~~~A~~~~~~m~~~ 481 (541)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=9.3e-09 Score=81.04 Aligned_cols=103 Identities=9% Similarity=0.079 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
...+..+...+.+.|++++|+..|+++++++|.++.+|..++.+|.+.|++++|++.+++..+.......
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA---------- 77 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----------
Confidence 3567788889999999999999999999999999999999999999999999999999998764321111
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 498 VQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.++....++..+|.++..+|+.++|++.+++++
T Consensus 78 ---------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 78 ---------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123346788999999999999999999887765
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=1.3e-07 Score=75.44 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=83.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 383 EHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
+.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345677788888888888888888888876 3344 56778888888899999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 048358 461 IYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=9.4e-07 Score=80.98 Aligned_cols=163 Identities=9% Similarity=-0.001 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--H
Q 048358 285 VICNALIEMYIKCGCINQASQLFDQMVE--R-DV------VSWSTVIGGLANHGKAHKAIHLFHEMQRLKV---PPN--D 350 (541)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 350 (541)
..+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567788889999999988876522 1 11 2244456667788999999999999876421 122 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh---hhcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------C
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMK---RDHHIEH--KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-------D 417 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~ 417 (541)
.+++.+...|...|++++|...|++.. +..+..+ ...++..+...|...|++++|+..+++. .+.+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478888999999999999999999887 3221111 1257889999999999999999999876 1111 2
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHHhcc
Q 048358 418 AKIWGSLLSSCRTYSNLEIA-VIAMEHLLVL 447 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 447 (541)
..+|..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67788888999999999999 7778887753
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=1.2e-07 Score=86.40 Aligned_cols=193 Identities=7% Similarity=-0.089 Sum_probs=126.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHH
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLV 393 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 393 (541)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..++...+. .+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34566777788888888888888888887764 446777778888888888888888888888763 355667778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 048358 394 DLLGRAGRLDQALNIIEEM-PMKPDA-KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDV 471 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (541)
.+|...|++++|...|++. ...|+. ..+...+....+ ..++...........|.++.....+...+ .|++++|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 8888888888888888776 222311 011111111111 11112222222234466666666665543 5777777
Q ss_pred HHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHH-hcccCCcccccccCC
Q 048358 472 SRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQ-DRAKDVIDIMYEDIG 540 (541)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~i~ 540 (541)
.+.+++.. +++|++......++.++... ++.++|.+.+.++++
T Consensus 155 ~~~~~~al--------------------------~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNH--------------------------EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGG--------------------------TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhh--------------------------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 76665543 35788888888888888877 677888887777654
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=5e-08 Score=78.58 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|+..|+.+.... |.+...|..+..+|.+.|++++|+..|++. ...| +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3455666777788888888888888887743 556777888888888888888888888877 3444 45677778888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+...|++++|+..|+++++..|.++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88999999999999999998888776655443
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.5e-07 Score=78.96 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=102.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH-HHhcCCH--
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL-LGRAGRL-- 402 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 402 (541)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888999998887765 5677888889999999999999999999988753 4567778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 403 DQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 403 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
++|...+++. ...| +...+..+...+...|++++|+..++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 4445 567888888889999999999999999999999886544
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=9.8e-08 Score=74.33 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCR 429 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 429 (541)
.+..+...+...|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++. .+.| +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45667778889999999999999999853 567888999999999999999999999988 5556 5678888999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCc
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~ 452 (541)
..|++++|+..++++++.+|.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999998764
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=4.9e-07 Score=77.63 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CC-CCcHhHHHHHHHHHHhcCCH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HI-EHKIEHYGCLVDLLGRAGRL 402 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~ 402 (541)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..... +. +....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555655533333221 11233455555555666666666666665554410 11 11234455666666666666
Q ss_pred HHHHHHHHhC-CC---CC-C----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCC----cchHHHHHHHHHhcCC
Q 048358 403 DQALNIIEEM-PM---KP-D----AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PED----TGNYVLLSNIYAKHGR 467 (541)
Q Consensus 403 ~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~ 467 (541)
++|.+.+++. .. .+ + ...+..+...+...|++++|...++++++.. ..+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554 10 11 1 2345556666777777777777777776543 111 2235677777888888
Q ss_pred HHHHHHHHHHhhh
Q 048358 468 WEDVSRMRKLIRS 480 (541)
Q Consensus 468 ~~~A~~~~~~m~~ 480 (541)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776654
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.2e-07 Score=72.89 Aligned_cols=111 Identities=7% Similarity=-0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSC 428 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 428 (541)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 455666677777788888888888777642 456677778888888888888888888776 4445 467778888888
Q ss_pred hhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHH
Q 048358 429 RTYSNLEIAVIAMEHLLVLE------PEDTGNYVLLSNIYA 463 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~ 463 (541)
...|++++|+..++++++.+ |.++..+..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888999999998888888 777777766665543
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.64 E-value=1.9e-08 Score=86.41 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..|+++++..|.++.++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 356778888889999999999988887 3344 57788888899999999999999999999999999999999999999
Q ss_pred hcCCHHHHH-HHHHHhhhCC
Q 048358 464 KHGRWEDVS-RMRKLIRSKS 482 (541)
Q Consensus 464 ~~g~~~~A~-~~~~~m~~~~ 482 (541)
..|+.+++. ..++.|...+
T Consensus 168 ~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 998888877 5566665443
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=1.9e-07 Score=71.27 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=74.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CcchHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE--DTGNYVLLSN 460 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 460 (541)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566677777777777777777766 2233 5566777777788888888888888888888888 8888888888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhCCC
Q 048358 461 IYAKH-GRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 461 ~~~~~-g~~~~A~~~~~~m~~~~~ 483 (541)
++.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888776543
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=7.7e-07 Score=79.10 Aligned_cols=134 Identities=13% Similarity=-0.001 Sum_probs=75.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc--HhHHHHHHHHHH
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK--IEHYGCLVDLLG 397 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 397 (541)
.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+. ..|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHH
Confidence 34455666677777777666665543 43334444445566667777777777644431 0111 224555666666
Q ss_pred hcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 048358 398 RAGRLDQALNIIEEM--P-MKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLL 458 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 458 (541)
+.|++++|+..|++. + ..|. .........++.+.|+.++|...|+++.+.+|. +.++..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 677777777766665 1 1132 234455555566677777777777777766666 5444444
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=6.6e-06 Score=75.69 Aligned_cols=227 Identities=12% Similarity=0.070 Sum_probs=108.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhc-C-
Q 048358 223 GYTHIGSYAEALDVFRQMQMVGIEPDE-ISIVSVLPACAQLG-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKC-G- 298 (541)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 298 (541)
...+.+..++|++++.+++.. .|+. ..++.--..+...| .++++..+++.+.... +.+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334444556777777777765 3433 33444444444444 3566666666555544 22344454444444443 4
Q ss_pred CHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048358 299 CINQASQLFDQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDS 375 (541)
Q Consensus 299 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 375 (541)
++++++++++.+.+. |..+|+.-.-.+...+.++. . ....+.++++.+++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~--------------~-------------~~~~~~eELe~~~k 192 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR--------------I-------------SEAQWGSELDWCNE 192 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC--------------C-------------CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc--------------c-------------chhhHHHHHHHHHH
Confidence 455555555555442 22333333333333232320 0 00001144444444
Q ss_pred hhhhcCCCCcHhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH------------
Q 048358 376 MKRDHHIEHKIEHYGCLVDLLGRAGR-------LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNL------------ 434 (541)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~------------ 434 (541)
+.+.+ +.|...|+.....+.+.++ ++++++.++++ ...| |...|+.+-..+.+.|..
T Consensus 193 ~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 193 MLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 44432 3344444444444444443 34445444443 2233 344444444444333321
Q ss_pred --------HHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 435 --------EIAVIAMEHLLVLE------PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 435 --------~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.........+.... +.++.++..|+++|...|+.++|.++++.+.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333333222 567778889999999999999999999998644
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=1.3e-07 Score=74.36 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcc-------hHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTG-------NYV 456 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 456 (541)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344666777777778888887777776 4445 4567777777788888888888888888877765543 566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 457 LLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.++.++...|++++|++.+++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677777788888888888877655
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=6.7e-07 Score=79.46 Aligned_cols=183 Identities=8% Similarity=0.011 Sum_probs=134.9
Q ss_pred hcCCHHHHHHHHHccCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCH---------------
Q 048358 296 KCGCINQASQLFDQMVE--R-DVVSWSTV-------IGGLANHGKAHKAIHLFHEMQRLKVPPND--------------- 350 (541)
Q Consensus 296 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------- 350 (541)
..++...|.+.|.++.. | ....|..+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56788888888887744 2 44567666 4555555555566555555443 22221
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 048358 351 -------ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDA----K 419 (541)
Q Consensus 351 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 419 (541)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 22344567788899999999999999863 244336667777899999999999999987434433 4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLE--PE-DTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67778888999999999999999998533 33 456888999999999999999999999987643
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.61 E-value=8.3e-08 Score=93.93 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc---------------HhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK---------------IEHYGCLVDLLGRAGRLDQALNIIEEM-P 413 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 413 (541)
...+..+...+.+.|+++.|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++. .
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4456666777777777777777777777642 222 355666666777777777777776665 3
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH-HHHHh
Q 048358 414 MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR-MRKLI 478 (541)
Q Consensus 414 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m 478 (541)
+.| +...|..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|++++|.+ .++.|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 456666666667777777777777777777777777777777777777766666653 34444
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=4.7e-07 Score=77.74 Aligned_cols=152 Identities=12% Similarity=-0.057 Sum_probs=88.3
Q ss_pred hcCCHHHHHH---HHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHhccCcHH
Q 048358 296 KCGCINQASQ---LFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR----LKVP-PNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 296 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~-p~~~~~~~l~~~~~~~g~~~ 367 (541)
..|++++|.+ .+..-......++..+...+...|++++|...+++... .+.+ ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 44332223344566666666666666666666666544 1111 12345566666777777777
Q ss_pred HHHHHHHHhhhh---cCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCH
Q 048358 368 EGLMYFDSMKRD---HHIEH--KIEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPD----AKIWGSLLSSCRTYSNL 434 (541)
Q Consensus 368 ~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 434 (541)
+|...+++.... .+-.+ ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766543 11111 2344666777777777877777777665 11111 23356666777888888
Q ss_pred HHHHHHHHHHhcc
Q 048358 435 EIAVIAMEHLLVL 447 (541)
Q Consensus 435 ~~a~~~~~~~~~~ 447 (541)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=8.8e-07 Score=68.14 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSS 427 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 427 (541)
...+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3456666777777788888888888777642 445667777788888888888888888776 3334 56777888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...|++++|...++++++.+|.++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88899999999999999988888887777776654
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.60 E-value=6.8e-07 Score=89.46 Aligned_cols=173 Identities=9% Similarity=0.033 Sum_probs=140.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc----------HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF----------WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR 398 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (541)
...++|++.++++...+ +-+...|+.--.++...|+ ++++++.++.+.+.+ +.+..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34567788888888765 4444555554445555555 899999999998854 6678888888888888
Q ss_pred cC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc--------
Q 048358 399 AG--RLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYS-NLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKH-------- 465 (541)
Q Consensus 399 ~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 465 (541)
.| +++++++.++++ ...| +..+|+.-..++.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 779999999998 4455 7788888888888888 899999999999999999999999999998874
Q ss_pred ------CCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccC
Q 048358 466 ------GRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 530 (541)
Q Consensus 466 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 530 (541)
+.+++|.+.+++... .+|++.++|.-+++++...++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--------------------------~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--------------------------TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--------------------------HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh--------------------------hCCCCccHHHHHHHHHhcCCCccc
Confidence 557888888887654 479999999999999999998777
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.60 E-value=1.6e-07 Score=92.32 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=84.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWE 469 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (541)
+...+.+.|++++|++.|++. ...| +..+|..+..++.+.|++++|+..++++++.+|.++.++..++.+|.+.|+++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344556677777777777766 3344 46777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHH--HHHHhcccCCccccc
Q 048358 470 DVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELL--ALHQDRAKDVIDIMY 536 (541)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 536 (541)
+|.+.+++..+. +|++..++..++.+ +..+|+.++|++.++
T Consensus 92 eA~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--------------------------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877652 46666677777777 677788888887776
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=4.7e-07 Score=74.86 Aligned_cols=95 Identities=8% Similarity=0.051 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA 463 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (541)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444555555555555555555544 2223 34445555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHhhh
Q 048358 464 KHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 464 ~~g~~~~A~~~~~~m~~ 480 (541)
+.|++++|...+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555443
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=4.3e-05 Score=70.32 Aligned_cols=248 Identities=12% Similarity=0.013 Sum_probs=154.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 048358 185 AWNNLISGYARLGQMKKARMLFDKMPY---TTIVSWTAMISGYTHIG-SYAEALDVFRQMQMVGIEPDEISIVSVLPACA 260 (541)
Q Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 260 (541)
.++.+.....+.+..++|+++++.+.. .+..+|+.--.++...| .+++++++++.++... +-+...|+.-...+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444555556667889999998864 34467888778888888 5999999999999874 446666776666666
Q ss_pred cc-C-ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 261 QL-G-SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 261 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
.. + +++.+..+++.+.+.. +.+..+|+.-.-++.+.|.++ ..+. ..+.++++.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~----------~~~~-------------~~~~eELe~~ 190 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG----------RISE-------------AQWGSELDWC 190 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT----------CCCH-------------HHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc----------ccch-------------hhHHHHHHHH
Confidence 65 6 8899999999988765 445667765554444444333 0000 1123455555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCH---------
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGF-------WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRL--------- 402 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------- 402 (541)
+++.+.. +-|...|+.....+.+.+. ++++++.+++..... +.|...|+.+-..+.+.|+.
T Consensus 191 ~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 191 NEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 5555544 3445555555555444443 566666666666532 45566666655555555543
Q ss_pred -----------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh-ccCCCCcchHHHHHH
Q 048358 403 -----------DQALNIIEEM-PM-------KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLL-VLEPEDTGNYVLLSN 460 (541)
Q Consensus 403 -----------~~A~~~~~~~-~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 460 (541)
.+..++..++ .. .+....+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2333444444 11 2567788888888888899999999999986 567776666665544
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=4.5e-07 Score=71.38 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------cchHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED-------TGNYV 456 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 456 (541)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455677778888888888888888876 3333 56778888888889999999999999999887765 77899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhccc
Q 048358 457 LLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAK 529 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 529 (541)
.++.++.+.|++++|.+.+++..+. .| ++.....++.++..+++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--------------------------~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--------------------------HR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--------------------------CC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998763 34 3566777888877776543
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=2.2e-07 Score=87.92 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKP-DAKIWGSLLSSCR 429 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 429 (541)
..+..+...+.+.|++++|+..|++..+.. +... .....+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777666521 1100 000000000 1223 3466777777888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCC
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKP 509 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 509 (541)
+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+ ++|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--------------------------l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--------------------------IAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCC
Confidence 888888888888888888888888888888888888888888888888765 357
Q ss_pred ChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 510 FLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
++..++..|+.++..+++.+++....
T Consensus 339 ~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888777665444
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.56 E-value=4.9e-07 Score=71.18 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHH
Q 048358 391 CLVDLLGRAGRLDQALNIIEEM-PMKPDA----KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED---TGNYVLLSNIY 462 (541)
Q Consensus 391 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 462 (541)
.+...+...|++++|...|++. ...|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566666666666666665 222321 355566666777777777777777777777776 55677777777
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 048358 463 AKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~ 480 (541)
.+.|++++|...++++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777777655
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.51 E-value=8.2e-07 Score=70.70 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 048358 347 PPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSL 424 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 424 (541)
+.+...+..+...+...|++++|...|+...... +.+...|..+...+...|++++|...+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3456677777777888888888888888877642 455677788888888888888888888776 3344 56777888
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHH
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPE-----DTGNYVLLSNIYA 463 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 463 (541)
..++...|++++|+..++++++..|+ +......+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 88888888889998888888887766 4555555544443
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.51 E-value=1.9e-07 Score=72.24 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 048358 399 AGRLDQALNIIEEM-PM---KP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSR 473 (541)
Q Consensus 399 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (541)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++.+|.++.++..++.++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777766 43 24 346677777778888888888888888888888888888888888888888888888
Q ss_pred HHHHhhh
Q 048358 474 MRKLIRS 480 (541)
Q Consensus 474 ~~~~m~~ 480 (541)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=7e-07 Score=71.53 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-------C
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEM-PMKPD-------------AKIWGSLLSSCRTYSNLEIAVIAMEHLLVL-------E 448 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 448 (541)
......+...|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444444555555555555544 22222 337888888888899999999998888888 9
Q ss_pred CCCcchH----HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 449 PEDTGNY----VLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 449 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|++...| +..+.++...|++++|+..|++..+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998899 99999999999999999999988664
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.3e-06 Score=85.53 Aligned_cols=130 Identities=7% Similarity=-0.045 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPN---------------DITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34578888999999999999999999998853 223 47888999999999999999999999998
Q ss_pred hcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH-HHHHHhc
Q 048358 379 DHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVI-AMEHLLV 446 (541)
Q Consensus 379 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 446 (541)
.. +.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++.+.++.+++.. .++++..
T Consensus 346 ~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 567888999999999999999999999998 6677 45677778888888888887764 4555443
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=2e-07 Score=74.74 Aligned_cols=103 Identities=8% Similarity=-0.025 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC-------Ccc-----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccC
Q 048358 419 KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPE-------DTG-----NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKT 486 (541)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (541)
..+......+.+.|++++|+..|+++++.+|. +.. .|..++.++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 34556667788999999999999999999998 333 8999999999999999999999998763
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChhHHH----HHHHHHHHHHhcccCCcccccccCC
Q 048358 487 PGCSLIEVNNEVQEFVSGDDTKPFLKDIF----WLLELLALHQDRAKDVIDIMYEDIG 540 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~i~ 540 (541)
|-...+++|++..+| ..+|..+..+|++++|+..++++|+
T Consensus 87 --------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 --------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112235799999999 9999999999999999999988763
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.7e-06 Score=68.59 Aligned_cols=113 Identities=13% Similarity=0.018 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWG 422 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 422 (541)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4556666777777777777777777777653 233 566777788888888888888888776 3344 567777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.+..++...|++++|...++++++..|.++..+..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888889999999999999999999888877777665443
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.7e-06 Score=65.79 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHH
Q 048358 349 NDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP---DAKIWGSL 424 (541)
Q Consensus 349 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 424 (541)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34556666777777788888888887777642 445666777788888888888888888776 3334 46777778
Q ss_pred HHHHhhc-CCHHHHHHHHHHHhccCCCCc
Q 048358 425 LSSCRTY-SNLEIAVIAMEHLLVLEPEDT 452 (541)
Q Consensus 425 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 452 (541)
...+... |++++|++.++++.+..|+++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888887754
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=3e-07 Score=86.09 Aligned_cols=114 Identities=6% Similarity=-0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 350 DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCR 429 (541)
Q Consensus 350 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 429 (541)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455667777888888888888888887764 243321 222333333333221 136667777777
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 430 TYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
+.|++++|+..++++++.+|.+..+|..++.+|...|++++|...+++..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888778888888888888888888888877654
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=7.9e-05 Score=68.21 Aligned_cols=192 Identities=10% Similarity=0.035 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcC--CHHHHHHHHHccCC---CChhHHHHHHHHHHhcCC-hHHHHHHH
Q 048358 265 LELGEWIHMYCDKNHLLRRTVICNALIEMYIKCG--CINQASQLFDQMVE---RDVVSWSTVIGGLANHGK-AHKAIHLF 338 (541)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 338 (541)
++.+..+++.+.... +-+..+|+.-.-++.+.| .++++..++..+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555544 234555555555555555 36666666666633 344555555555555565 46666776
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhc-----
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHT--------------GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRA----- 399 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 399 (541)
.++++.. +-|...|+.....+... +.++++++.+....... |.|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 6666654 44555555444333322 34566666666666532 45555565444444443
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 048358 400 ------GRLDQALNIIEEM-PMKPDAKIWGSLLS-----SCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNI 461 (541)
Q Consensus 400 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 461 (541)
+.++++++.++++ ...||. .|..+.. +....|..++....+.++.+++|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 2345555555555 334432 2221111 11234555566666666666666655555554443
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=6.1e-07 Score=88.15 Aligned_cols=120 Identities=11% Similarity=0.056 Sum_probs=98.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN 433 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 433 (541)
+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445667899999999999888753 556788899999999999999999999887 5556 57888889999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHHH
Q 048358 434 LEIAVIAMEHLLVLEPEDTGNYVLLSNI--YAKHGRWEDVSRMRKL 477 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 477 (541)
+++|+..++++++..|.+...+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8889999999999884
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=2.2e-06 Score=81.03 Aligned_cols=139 Identities=10% Similarity=0.016 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
...+..+...+.+.|++++|+..|++..+.- ++.. .... .+..... -+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKL--QPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHH
Confidence 3467888889999999999999999887631 1100 0001 1111111 1235677889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..+++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 6666 57888899999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 048358 473 RM 474 (541)
Q Consensus 473 ~~ 474 (541)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=9.4e-07 Score=69.45 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC----CC----HHHHH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMK----PD----AKIWG 422 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~ 422 (541)
.+..+...+...|+++.|...|+...... +.+...+..+...+...|++++|...+++. ... ++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555555566666666666666665532 344555666666666666666666666655 111 12 55667
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK 464 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (541)
.+...+...|++++|...++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777777888888888888888888776 46666665555443
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=9.5e-05 Score=67.68 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=134.2
Q ss_pred HHHHHHHHHccCC---CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 048358 300 INQASQLFDQMVE---RDVVSWSTVIGGLANHG--KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGF-WNEGLMYF 373 (541)
Q Consensus 300 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 373 (541)
++++..+++.+.. .+..+|+.-.-.+...+ .+++++.++.++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777743 46778888777777777 4899999999999986 6678888777777777777 68999999
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc------
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRA--------------GRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY------ 431 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 431 (541)
+.+.+.+ +.|...|+.....+.+. +.++++++.+.+. ...| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9999864 66778888777776655 4578889888877 4455 677777666555544
Q ss_pred -----CCHHHHHHHHHHHhccCCCCcchHHHHHHHH---HhcCCHHHHHHHHHHhhhC
Q 048358 432 -----SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY---AKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 432 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 481 (541)
+.++++++.++++++..|++.-.+..++... ...|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4689999999999999999854444443322 2457788888888888763
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=6.1e-06 Score=64.71 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=71.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048358 354 IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI---EHYGCLVDLLGRAGRLDQALNIIEEM-PMKPD----AKIWGSLL 425 (541)
Q Consensus 354 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 425 (541)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++. ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344556666777777777777776642 2222 45666777777778888887777776 33333 45667777
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSN 460 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 460 (541)
.++...|++++|+..++++++..|+++........
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 77888888888888888888888887655544443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.35 E-value=1.2e-06 Score=82.00 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHH
Q 048358 315 VVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVD 394 (541)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (541)
...+..+...+.+.|++++|...|++.... .|+... +...+++.++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777888888999999999999998875 354432 234445554433221 236788999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCHHHH
Q 048358 395 LLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYA-KHGRWEDV 471 (541)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 471 (541)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4455 67889999999999999999999999999999999999999888844 45778888
Q ss_pred HHHHHHhhhCC
Q 048358 472 SRMRKLIRSKS 482 (541)
Q Consensus 472 ~~~~~~m~~~~ 482 (541)
..++++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.34 E-value=1.6e-06 Score=71.43 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=64.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDT-GNYVLLSNI 461 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 461 (541)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.++ .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999887 4455 578888899999999999999999999999999987 445555544
Q ss_pred HH
Q 048358 462 YA 463 (541)
Q Consensus 462 ~~ 463 (541)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1e-05 Score=78.58 Aligned_cols=163 Identities=7% Similarity=-0.081 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhh----cCCCCcHhH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLK-VPPND----ITFIGLLSACAHTGFWNEGLMYFDSMKRD----HHIEHKIEH 388 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 388 (541)
+..+...|...|++++|.+++..+...- ..++. ...+.+...+...|+++.+..++...... ........+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777766654321 01111 12223333445567777777777665432 111223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC---CCC----cc
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-----P--MKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE---PED----TG 453 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~ 453 (541)
+..+...|...|++++|..++++. + .+| ...++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888777765 1 122 23566677777888888888888888777543 221 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 454 NYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556667777778888888877766543
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.31 E-value=5.2e-06 Score=60.38 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCE
Q 048358 418 AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNE 497 (541)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (541)
...+..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|...+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------- 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------- 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------------
Confidence 345666666677777777777777777777777777777777777777777777777777654
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 048358 498 VQEFVSGDDTKPFLKDIFWLLELLALHQD 526 (541)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 526 (541)
.+|++..++..++.++..+|
T Consensus 72 ---------~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 72 ---------LDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHHC
T ss_pred ---------cCCCCHHHHHHHHHHHHhcC
Confidence 24666777777777766543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=2.5e-06 Score=69.81 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HH
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK----IEHYGCLVDLLGRAGRLDQALNIIEEM----PMKPD----AK 419 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 419 (541)
++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++. +..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555565555555554432100011 134555666666666666666666654 10111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 420 IWGSLLSSCRTYSNLEIAVIAMEHLLVLEP------EDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.+..+...+...|++++|...++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666677788888888888888776431 1244677888888889999999988887654
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=5.3e-05 Score=75.79 Aligned_cols=169 Identities=9% Similarity=0.093 Sum_probs=135.8
Q ss_pred CHHHHHHHHHccCC--C-ChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-
Q 048358 299 CINQASQLFDQMVE--R-DVVSWSTVIGGLANHGK----------AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG- 364 (541)
Q Consensus 299 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 364 (541)
..++|.+.++.+.. | +..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777744 2 44567666666666666 899999999998876 667778887777788888
Q ss_pred -cHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---------
Q 048358 365 -FWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG-RLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTY--------- 431 (541)
Q Consensus 365 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 431 (541)
+++++++.++++.+.. +.+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999864 667888888888888888 899999999888 5566 678888877776553
Q ss_pred -----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 048358 432 -----SNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWED 470 (541)
Q Consensus 432 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 470 (541)
+.++++++.+++++..+|.+..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999888554
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=1.3e-06 Score=67.36 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=64.2
Q ss_pred cCcHHHHHHHHHHhhhhcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 048358 363 TGFWNEGLMYFDSMKRDHH-IEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVI 439 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 439 (541)
.|++++|+..|++..+... -+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777765210 1334566777778888888888888888776 3344 46677777778888888888888
Q ss_pred HHHHHhccCCCCcchH
Q 048358 440 AMEHLLVLEPEDTGNY 455 (541)
Q Consensus 440 ~~~~~~~~~~~~~~~~ 455 (541)
.++++++..|.++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776543
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=7.1e-05 Score=72.61 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=94.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-cc
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDE----------------ISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-RR 283 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 283 (541)
...+.+.|++++|++.|..+.+..-.... ..+..+...|...|++++|...+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999988876322111 12445555666666666666666555442111 11
Q ss_pred H----hHHHHHHHHHHhcCCHHHHHHHHHccCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 048358 284 T----VICNALIEMYIKCGCINQASQLFDQMVE--------R-DVVSWSTVIGGLANHGKAHKAIHLFHEMQRL--KV-- 346 (541)
Q Consensus 284 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-- 346 (541)
. .+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333334445555555555544411 0 1224445555555556666666555554331 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 347 PPN-DITFIGLLSACAHTGFWNEGLMYFDSMKRDH---HIEHK--IEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 347 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
++. ...+..++..|...|++++|..++++..... ..++. ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 1244455555555566666655555544311 00111 123344444455555555555554443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=9.4e-07 Score=67.29 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=75.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------cchHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED------TGNYV 456 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 456 (541)
+...+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566778888888899999999888887 3444 67788888888999999999999999999999998 77778
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 048358 457 LLSNIYAKHGRWEDVSRMRKL 477 (541)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~ 477 (541)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877766655444
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=2.1e-05 Score=76.76 Aligned_cols=123 Identities=7% Similarity=0.002 Sum_probs=96.0
Q ss_pred HHhccCcHHHHHHHHHHhhhhcC--CC---C-cHhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 048358 359 ACAHTGFWNEGLMYFDSMKRDHH--IE---H-KIEHYGCLVDLLGRAGRLDQALNIIEEM---------PMKPD-AKIWG 422 (541)
Q Consensus 359 ~~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 422 (541)
.+...|++++|+.++++...... +. | ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577889999888877765311 11 2 3467888999999999999999888775 23454 46788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 423 SLLSSCRTYSNLEIAVIAMEHLLV-----LEPEDTG---NYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.|...|...|++++|+.+++++++ ++|++|. ....+..++...|.+++|+.+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999986 4677655 4457778888999999999999999874
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=5.6e-06 Score=80.80 Aligned_cols=125 Identities=9% Similarity=-0.033 Sum_probs=99.0
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCcc---hH
Q 048358 394 DLLGRAGRLDQALNIIEEM---------PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV-----LEPEDTG---NY 455 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~ 455 (541)
..+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|++|. ++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4566889999999988775 12343 46789999999999999999999999986 3455544 78
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccc
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIM 535 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 535 (541)
+.|+.+|..+|++++|+.++++..+.-.. .-...||...+...+|+..+..++++++|...+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998653110 011368999999999999999999988876655
Q ss_pred c
Q 048358 536 Y 536 (541)
Q Consensus 536 ~ 536 (541)
.
T Consensus 459 ~ 459 (490)
T 3n71_A 459 H 459 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 199
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.3e-05 Score=65.39 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----cHhH
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKV-PPN----DITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH----KIEH 388 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~ 388 (541)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++.......-.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444445555555555555554433210 001 12455555566666666666666665543210001 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 389 YGCLVDLLGRAGRLDQALNIIEEM-------PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 389 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566666677777777777666654 1111 13456666677788888888888888877643
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=3.4e-06 Score=67.37 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-
Q 048358 400 GRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSN----------LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG- 466 (541)
Q Consensus 400 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 466 (541)
+++++|++.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444555544444 2233 34444444444444433 679999999999999999999999999999875
Q ss_pred ----------CHHHHHHHHHHhhhC
Q 048358 467 ----------RWEDVSRMRKLIRSK 481 (541)
Q Consensus 467 ----------~~~~A~~~~~~m~~~ 481 (541)
++++|.+.|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999998774
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.06 E-value=2.2e-05 Score=58.35 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 417 DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888889999999999999999999999999999999999999999999999999987653
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=2.5e-05 Score=56.59 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=69.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIY 462 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (541)
+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|+..++++++.+|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4566777888888899999999888877 3334 5678888888999999999999999999999999999999999888
Q ss_pred HhcC
Q 048358 463 AKHG 466 (541)
Q Consensus 463 ~~~g 466 (541)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=3.3e-05 Score=59.09 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 405 ALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 405 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
|++.|++. ...| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555554 4444 56677777777888888888888888888888888888888888888888888888888877653
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.00 E-value=4.9e-06 Score=63.86 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHH
Q 048358 436 IAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIF 515 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 515 (541)
.|+..++++++.+|.++..+..++.+|...|++++|...+++... .+|++..++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~ 56 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--------------------------FDPTYSVAW 56 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------HCCCcHHHH
Confidence 578899999999999999999999999999999999999999875 368888999
Q ss_pred HHHHHHHHHHhcccCCcccccccC
Q 048358 516 WLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 516 ~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
..++.+|..+|+.++|...+++++
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999888765
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=1.5e-06 Score=69.48 Aligned_cols=86 Identities=8% Similarity=0.045 Sum_probs=75.5
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCccCCceeEEEEcCEE
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW----------EDVSRMRKLIRSKSMKKTPGCSLIEVNNEV 498 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 498 (541)
.+.+.+++|+..++++++++|.++..|..++.++...|++ ++|+..|++..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ 74 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------ 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------
Confidence 4567789999999999999999999999999999998875 588888888765
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHh-----------cccCCcccccccCC
Q 048358 499 QEFVSGDDTKPFLKDIFWLLELLALHQD-----------RAKDVIDIMYEDIG 540 (541)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~i~ 540 (541)
++|+...++..||++|..+| +.++|+..++++|+
T Consensus 75 --------ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 75 --------IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp --------HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 57999999999999999885 89999998888763
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=0.00017 Score=52.32 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 416 PDAKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
++...+..+..++...++ .++|..+++++++.+|.++.++..++..+.+.|++++|...++++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777777777654444 79999999999999999999999999999999999999999999988754
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.76 E-value=0.00015 Score=53.50 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=26.8
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 428 CRTYSNLEIAVIAMEHLLVLEPEDTG-NYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+...|++++|+..++++++.+|.++. .+..++.+|...|++++|...+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555554 55555555555555555555555544
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00042 Score=54.82 Aligned_cols=90 Identities=8% Similarity=-0.096 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 048358 392 LVDLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAK--- 464 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 464 (541)
+...|...+.+++|.++|++.-...+...+..+...|.. .+++++|+..|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555444212344444455555544 56666666666666654 345566667777766
Q ss_pred -cCCHHHHHHHHHHhhhCCC
Q 048358 465 -HGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 465 -~g~~~~A~~~~~~m~~~~~ 483 (541)
.+++++|...+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6677777777776666553
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.60 E-value=0.0012 Score=52.14 Aligned_cols=112 Identities=15% Similarity=-0.024 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh----cCCHHH
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR----AGRLDQ 404 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 404 (541)
+++++|..+|++..+.| .|+.. +...|...+.+++|.+.|++..+. .+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44444 777788888888999999998874 466777888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCC
Q 048358 405 ALNIIEEMPMKPDAKIWGSLLSSCRT----YSNLEIAVIAMEHLLVLEP 449 (541)
Q Consensus 405 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 449 (541)
|.++|++.-...+...+..|...|.. .++.++|+..|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988333577888888888888 8999999999999988753
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=0.00053 Score=65.85 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=87.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-----C---CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCCCcc---h
Q 048358 393 VDLLGRAGRLDQALNIIEEM-P-----M---KPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLVL-----EPEDTG---N 454 (541)
Q Consensus 393 ~~~~~~~g~~~~A~~~~~~~-~-----~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~---~ 454 (541)
+..+.+.|++++|+.++++. . + .|+ ..+++.+..+|...|++++|+.+++++++. +|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999888765 1 1 222 467888889999999999999999998863 455544 7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 048358 455 YVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQD 526 (541)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 526 (541)
++.|+.+|..+|++++|+.++++..+--.. .-...||....++..|+.....++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998653110 011358888888888888877665
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.50 E-value=3.1e-05 Score=74.22 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcCEEEEE
Q 048358 430 TYSNLEIAVIAMEHLLV-----LEPEDTG---NYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNNEVQEF 501 (541)
Q Consensus 430 ~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 501 (541)
..|++++|+.+++++++ ++|+++. +++.|+.+|...|+|++|+.++++..+--..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~----------------- 372 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK----------------- 372 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-----------------
Confidence 46789999999998876 3466654 6788999999999999999999998653111
Q ss_pred EeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 502 VSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 502 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
.-...||+....+..||.+|..+|++++|...+++++
T Consensus 373 -~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 373 -HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp -HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 0113699999999999999999999999999888764
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.49 E-value=0.00035 Score=66.95 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=66.2
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHH
Q 048358 398 RAGRLDQALNIIEEM---------PMKPD-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV-----LEPEDTG---NYVLLS 459 (541)
Q Consensus 398 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 459 (541)
..|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778888777664 22343 36788899999999999999999999886 3455544 788899
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC
Q 048358 460 NIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
.+|..+|++++|+.++++..+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00046 Score=51.00 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 314 DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
++..+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555666666666666555543 33444555555566666666666666655543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.44 E-value=0.0034 Score=57.70 Aligned_cols=138 Identities=12% Similarity=-0.044 Sum_probs=67.4
Q ss_pred CChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---C-----cHHHHHHHHHHhhhh
Q 048358 313 RDVVSWSTVIGGLA--NHG---KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHT---G-----FWNEGLMYFDSMKRD 379 (541)
Q Consensus 313 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~~ 379 (541)
.+...|...+.+.. ..+ ...+|..+|++.++.. |-....+..+..+|... + ........++.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 35566666655432 222 3477888888888764 33344555444444310 0 001111111111110
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 112344455555555555556666666666555 333555555555555556666666666666666665553
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.38 E-value=0.011 Score=44.63 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=92.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 048358 327 NHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQAL 406 (541)
Q Consensus 327 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 406 (541)
-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+ ..+|+.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 346666666666655542 24444555554444444445555555555442211 1244444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 407 NIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 407 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.-+-.++ .+...+...+..+...|+-++-..++..++...+++++.+..++.+|.+.|+..+|.+++++.-++|++.
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4444443 3445556677788899999999999999877888889999999999999999999999999999998743
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.35 E-value=0.00011 Score=70.47 Aligned_cols=97 Identities=8% Similarity=-0.051 Sum_probs=78.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcc-----CCCCc---chHHHHHHHHHhcCCHHHHHHHHHHhhhCCCccCCceeEEEEcC
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVL-----EPEDT---GNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKKTPGCSLIEVNN 496 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (541)
+..+...|++++|+..++++++. +|.++ .+++.|+.+|...|+|++|+.+++++.+--...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~----------- 362 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF----------- 362 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-----------
Confidence 44567889999999999999864 35554 478889999999999999999999886531110
Q ss_pred EEEEEEeCCCCCCChhHHHHHHHHHHHHHhcccCCcccccccC
Q 048358 497 EVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKDVIDIMYEDI 539 (541)
Q Consensus 497 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~i 539 (541)
....||+....+..|+.+|..+|++++|...+++++
T Consensus 363 -------lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 363 -------FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -------SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 113689999999999999999999999999888764
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.32 E-value=0.00044 Score=50.85 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 048358 392 LVDLLGRAGRLDQALNIIEEM-PMKP-DAK-IWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRW 468 (541)
Q Consensus 392 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (541)
....+.+.|++++|++.|++. ...| +.. .+..+..++...|++++|+..|+++++.+|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677788888888888876 4445 456 77778888888899999999999999988888776632 445
Q ss_pred HHHHHHHHHh
Q 048358 469 EDVSRMRKLI 478 (541)
Q Consensus 469 ~~A~~~~~~m 478 (541)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.0017 Score=51.26 Aligned_cols=88 Identities=17% Similarity=0.045 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHHH
Q 048358 364 GFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAG---RLDQALNIIEEM-PMK-P--DAKIWGSLLSSCRTYSNLEI 436 (541)
Q Consensus 364 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 436 (541)
+....+.+.|.+..... +++..+...+..++++.+ +.++++.+|++. ... | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 34455555665555422 355555666666666666 445666666665 222 4 23444555555666777777
Q ss_pred HHHHHHHHhccCCCCcc
Q 048358 437 AVIAMEHLLVLEPEDTG 453 (541)
Q Consensus 437 a~~~~~~~~~~~~~~~~ 453 (541)
|.+.++++++.+|++..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 77777777776666543
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.27 E-value=3.3e-06 Score=78.82 Aligned_cols=260 Identities=10% Similarity=0.022 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIK 125 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 125 (541)
+.+|+.|..+..+.+++.+|.+.|=+. .|+..|..++.+..+.|++++-+..+...++. ..++..=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-------~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-------ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-------CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------hcccccHHHHHH
Confidence 445555555555555555554443222 34444555555555555555555554444333 222333344555
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048358 126 SCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARML 205 (541)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (541)
+|++.++..+..+.+ -.||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHH
Confidence 555555544333222 123433334455555555555555555544432 11111111222222222111
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHh
Q 048358 206 FDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTV 285 (541)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (541)
-++ ..++.+|..+-.+|...+++.-|--.--.+.- .|| ....++..|-..|.+++...+++.-... -.....
T Consensus 193 ArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 193 ARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 111 12455666666666666665544332222221 111 1122344455555555555555544321 123445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC----C-------ChhHHHHHHHHHHhcCChHHHH
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE----R-------DVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
+|+-|.-.|++- +.++..+.++.... | ....|.-++-.|..-.+++.|.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 556555555543 33333333332211 1 3345666666666666665554
No 220
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.05 E-value=0.31 Score=48.74 Aligned_cols=113 Identities=10% Similarity=-0.024 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITF----IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 405 (541)
+.+.|...|....... ..+.... ..+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 5667777776665432 2222221 12222333334233444444443332 12222233333444456777777
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 406 LNIIEEMPMKP-D-AKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 406 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
...|+.|+..+ + .....=+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777774332 1 21111233345566777777777777654
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.98 E-value=0.0079 Score=44.55 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHH
Q 048358 386 IEHYGCLVDLLGRAGRLDQALNIIEEM-----P----MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYV 456 (541)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (541)
......+...+.+.|++..|..+|+.. + -.+....+..+..++.+.|+++.|+..++++++..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334456666677777777777766654 0 0123455666666667777777777777777777776655544
Q ss_pred HH
Q 048358 457 LL 458 (541)
Q Consensus 457 ~l 458 (541)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.0034 Score=55.20 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=70.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCHHH
Q 048358 402 LDQALNIIEEM-PMKPD---AKIWGSLLSSCRT-----YSNLEIAVIAMEHLLVLEPED-TGNYVLLSNIYAKH-GRWED 470 (541)
Q Consensus 402 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 470 (541)
...|...+++. .+.|+ ...|..+...|.+ .|+.++|.+.|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 56676 5677777777877 599999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHhhhCCCccCCc
Q 048358 471 VSRMRKLIRSKSMKKTPG 488 (541)
Q Consensus 471 A~~~~~~m~~~~~~~~~~ 488 (541)
|.+.+++....+....|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887664333
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.86 E-value=0.0082 Score=44.46 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 048358 348 PNDITFIGLLSACAHTGFWNEGLMYFDSMKRDH-----HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKPDA 418 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 418 (541)
.+...+..+...+...|++..|...|+...+.. .-.+....+..+..+|.+.|++++|...+++. .+.|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 345566677888888888888888888877642 11245667788888888888888888888877 456654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.84 E-value=0.0044 Score=48.85 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhhcCCCC--cHhHHHHHHHHHHhcCCHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTG---FWNEGLMYFDSMKRDHHIEH--KIEHYGCLVDLLGRAGRLDQA 405 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 405 (541)
...+.+-|.+....| +++..+...+..++.+++ ++++++.+|+.+.+.. .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 445556666666655 466677677777777766 5667777777777642 23 345556666777777777777
Q ss_pred HHHHHhC-CCCCCH
Q 048358 406 LNIIEEM-PMKPDA 418 (541)
Q Consensus 406 ~~~~~~~-~~~p~~ 418 (541)
.+.++.+ .++|+.
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 7777776 555643
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.014 Score=53.73 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHh---cC-C-------HHHHHHHHH
Q 048358 347 PPNDITFIGLLSACA--H---TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGR---AG-R-------LDQALNIIE 410 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~~ 410 (541)
+.+...|...+++.. . ..+..+|+.+|++..+.. |.....|..+..+|.. .+ . ...+.+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 667778887776643 2 234678999999999752 3334445544444421 11 1 112222222
Q ss_pred hCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 411 EMP-MKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 411 ~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
.+. ...+..++..+...+...|++++|+..+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 332 234778888887777778999999999999999996 46778899999999999999999999887654
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.79 E-value=0.0083 Score=43.27 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=51.5
Q ss_pred CCcHhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 383 EHKIEHYGCLVDLLGRAGR---LDQALNIIEEM-PMKP-DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+++...+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566677777777765444 68888888877 5556 45666667777888889999999999888888873
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.097 Score=55.06 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048358 295 IKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEM 341 (541)
Q Consensus 295 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 341 (541)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555554443 23345555555555555555555555544
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.34 E-value=0.033 Score=42.13 Aligned_cols=90 Identities=18% Similarity=0.031 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQ---ALNIIEEM-PMK-P--DAKIWGSLLSSCRTYSNLE 435 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~ 435 (541)
...+..+.+-|....... .++..+-..+..++++.....+ ++.++++. ... | .......+.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344444555555444422 2445555555566666555444 55555555 222 3 1223333444456666666
Q ss_pred HHHHHHHHHhccCCCCcch
Q 048358 436 IAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~ 454 (541)
+|.+.++.+++.+|.|..+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 6666666666666665443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.42 Score=38.64 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048358 294 YIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 294 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34445555555554443 3344555555555555555555555554322 222333333344444433333
Q ss_pred HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 048358 374 DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEMP 413 (541)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 413 (541)
+....++ -++.....+.-.|+++++.++|.+.+
T Consensus 84 ~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3222210 02333344445566666666665554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.35 Score=39.08 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=46.4
Q ss_pred HHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 259 CAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|.++|....+ +..+.-.|...|+.++...+-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555554433 1344555555555555555555555554433 223333344445544444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+.....| -++....++...|+++++.++|.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4333333 1222333334445555555555443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.97 E-value=0.07 Score=40.38 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhhhhcCCCC--cHhHHHHHHHHHHhcC
Q 048358 326 ANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNE---GLMYFDSMKRDHHIEH--KIEHYGCLVDLLGRAG 400 (541)
Q Consensus 326 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 400 (541)
........+.+-|.+....| .|+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhh
Confidence 33344555566666655555 4677777777777777766555 77778777764 1 23 3444556667778888
Q ss_pred CHHHHHHHHHhC-CCCCC
Q 048358 401 RLDQALNIIEEM-PMKPD 417 (541)
Q Consensus 401 ~~~~A~~~~~~~-~~~p~ 417 (541)
++++|.+.++.+ .++|+
T Consensus 89 ~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 888888888777 55563
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.93 E-value=0.085 Score=55.48 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=60.9
Q ss_pred HHHcCCChHHHHH-HHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCc
Q 048358 55 VCNSGGDLAYASL-LFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCP 133 (541)
Q Consensus 55 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 133 (541)
.....+++++|.+ ++..++. ......+++.+.+.|.++.|+++.++- ..-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ-----------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH-----------------HHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc-----------------chheehhhhcCCH
Confidence 3345677888777 6644431 122266667777777777777654211 1112334556777
Q ss_pred hHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 134 SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 134 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
+.|.++.+. -.+...|..+...+.+.|+++.|.+.|.++.
T Consensus 669 ~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 777766432 2356677778888888888888877777654
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.82 E-value=3.8e-05 Score=71.82 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=191.0
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 048358 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIH 140 (541)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (541)
+++.|.+.-++.. .+..|..|..+....+...+|++.|-+ ..|+..|..++.++.+.|.++.-...+
T Consensus 40 ~ldRa~eyA~~~n--~p~VWs~LgkAqL~~~~v~eAIdsyIk-----------A~Dps~y~eVi~~A~~~~~~edLv~yL 106 (624)
T 3lvg_A 40 NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEVVQAANTSGNWEELVKYL 106 (624)
T ss_dssp CSTTTTTSSSSCC--CCCCSSSHHHHTTTSSSCTTTTTSSCC-----------CSCCCSSSHHHHHTTTSSCCTTHHHHH
T ss_pred ccHHHHHHHHHhC--CccHHHHHHHHHHccCchHHHHHHHHh-----------CCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444444333 456788899999999998888776532 567788999999999999999999988
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHH
Q 048358 141 AHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAM 220 (541)
Q Consensus 141 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 220 (541)
....+..- ++.+=+.|+-+|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+. -|..|
T Consensus 107 ~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akL 176 (624)
T 3lvg_A 107 QMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRL 176 (624)
T ss_dssp HTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTT
T ss_pred HHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHH
Confidence 87766533 34444679999999999766543322 3777777888888889999998888877765 34456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH
Q 048358 221 ISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300 (541)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (541)
..++.+.|++..|.+.-++ .-+..||..+-.+|...+.+..|...--.++-. +.-...++..|...|-+
T Consensus 177 AstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f 245 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYF 245 (624)
T ss_dssp SSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCH
Confidence 6677888998888765444 346678888999999999888776553333321 22233466678888888
Q ss_pred HHHHHHHHccC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 301 NQASQLFDQMV---ERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 301 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
++-+.+++.-. +.....|+-|.-.|++- ++++..+.++..-. +.|. -.++++|....-|.++.-+|..-
T Consensus 246 ~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 246 EELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp TTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHhcc
Confidence 88888877653 35677788888777775 45666655554322 2222 13677788777777777666543
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.48 E-value=0.43 Score=36.79 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=14.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 048358 424 LLSSCRTYSNLEIAVIAMEHLLVLEPED 451 (541)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (541)
+.-++.+.|++++|.+..+.+++.+|.|
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3334555555555555555555555554
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.19 E-value=0.12 Score=40.95 Aligned_cols=117 Identities=12% Similarity=0.028 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCH-HH
Q 048358 353 FIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI-------EHYGCLVDLLGRAGRLDQALNIIEEM----PMKPDA-KI 420 (541)
Q Consensus 353 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~ 420 (541)
+..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++. ..-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556666777777777766654432222331 24455667777777777777777664 110111 00
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 421 WGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
...+ .. ...... -.. .+.+.+.-..++.+|.+.|++++|+.+++.++.+
T Consensus 103 ~~~~-~~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPST-GN---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc-cc---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0000 00 000000 000 1233467788999999999999999999887543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.13 Score=52.49 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=51.3
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
.-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++-++.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 3367899999999999999999999999999999999999999999999999973
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.00 E-value=0.24 Score=37.58 Aligned_cols=65 Identities=8% Similarity=-0.037 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048358 416 PDAKIWGSLLSSCRTYSN---LEIAVIAMEHLLVLEPE-DTGNYVLLSNIYAKHGRWEDVSRMRKLIRS 480 (541)
Q Consensus 416 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 480 (541)
|+..+--.+..++.++.+ ..+++.+++.+.+.+|. ..+.+..|+.++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 33566666666665553 345566666666666666666666666654
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.86 E-value=0.16 Score=39.43 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhccCcH------HHHHHHHHHhhhhcCCCCcHh-HHHHHHHH------HHhcCCHHHHHHHHHhC-
Q 048358 347 PPNDITFIGLLSACAHTGFW------NEGLMYFDSMKRDHHIEHKIE-HYGCLVDL------LGRAGRLDQALNIIEEM- 412 (541)
Q Consensus 347 ~p~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~- 412 (541)
+-|..+|-..+....+.|++ +..+++|++... .+||+.. .|...+.. +...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556666666666666777 777777777766 3455421 12222211 12235555555555554
Q ss_pred CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 413 PM-KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 413 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
.. +--...|.....--.++|+++.|..++.+++.+.|.+...
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 10 0014444444444455555555555555555555554333
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.75 E-value=0.047 Score=48.09 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhhcCCCCc---HhHHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh-cCC
Q 048358 366 WNEGLMYFDSMKRDHHIEHK---IEHYGCLVDLLGR-----AGRLDQALNIIEEM-PMKPD--AKIWGSLLSSCRT-YSN 433 (541)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~ 433 (541)
...|...+++..+- .|+ ...|..+...|.+ -|+.++|.+.|++. .+.|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45566666666653 344 4567777777777 38888888888877 55563 5666666666666 488
Q ss_pred HHHHHHHHHHHhccCCC
Q 048358 434 LEIAVIAMEHLLVLEPE 450 (541)
Q Consensus 434 ~~~a~~~~~~~~~~~~~ 450 (541)
.+++.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888877655
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.42 E-value=5.7 Score=41.53 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=21.3
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHH
Q 048358 119 TLPFVIKSCAGLLCPSLGKQIHAHVCK 145 (541)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 145 (541)
-|..++++..+.++.+.+.++|..+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777777888888888888888764
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.27 E-value=0.36 Score=37.55 Aligned_cols=97 Identities=10% Similarity=0.190 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHHHH---hccCcHHHHHHHHHHhhhh
Q 048358 313 RDVVSWSTVIGGLANHGKA------HKAIHLFHEMQRLKVPPNDI----TFIGLLSAC---AHTGFWNEGLMYFDSMKRD 379 (541)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~---~~~g~~~~a~~~~~~~~~~ 379 (541)
.|..+|-..+...-+.|+. ++..++|++.... +||+.. .|..+---| ...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566676666666666776 6666777766664 455432 122222212 1235666777777777553
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 380 HHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+-.- ...|......-.++|+...|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 555666666666777777777777665
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.13 E-value=1.4 Score=33.48 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 297 CGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 297 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
+|++......+-.+-. +.......+..+..+|+-++-.+++..+.... +|++.....+..+|.+.|+..++.+++.+.
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444444444443322 22334555667777788777777777754433 677777777888888888888888887777
Q ss_pred hhh
Q 048358 377 KRD 379 (541)
Q Consensus 377 ~~~ 379 (541)
-++
T Consensus 152 C~k 154 (172)
T 1wy6_A 152 CKK 154 (172)
T ss_dssp HHT
T ss_pred HHh
Confidence 664
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.75 E-value=3.7 Score=31.63 Aligned_cols=68 Identities=7% Similarity=-0.030 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhccCc---HHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 048358 348 PNDITFIGLLSACAHTGF---WNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM-PMKP 416 (541)
Q Consensus 348 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 416 (541)
|+..+-..+..++.++.+ ..+++.+++.+.+.. ........-.|.-++.+.|++++|.++.+.+ ...|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 444444444444444332 234445555544421 1112233333444555555555555555544 3344
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.70 E-value=0.75 Score=43.25 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCccCCc
Q 048358 422 GSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRS-----KSMKKTPG 488 (541)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 488 (541)
..++.++...|+.++++..+..+...+|-+...|..++.+|.+.|+..+|++.|+.+.. .|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556667778888888888888888888777888888888888888888888777654 26666543
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.39 E-value=1.6 Score=33.14 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=41.0
Q ss_pred CcHhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcch
Q 048358 384 HKIEHYGCLVDLLGRAGRL---DQALNIIEEM-PMKP--DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGN 454 (541)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (541)
|+..+--.+..++++..+. .+++.+++++ ...| ....+..+.-++.+.|++++|.+..+.+++.+|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444555555555443 3455555554 2223 23444455556777777777777777777777777543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.28 E-value=13 Score=35.50 Aligned_cols=48 Identities=4% Similarity=0.045 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHHh-----CCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 263 GSLELGEWIHMYCDKN-----HLLRRTVICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 263 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
|+++.|.+.+..+.+. +...+......++..|...|+++...+.+.-+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5566666655554432 22334445566666666677766665554433
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.01 E-value=1.8 Score=34.34 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Q 048358 390 GCLVDLLGRAGRLDQALNIIEEMP 413 (541)
Q Consensus 390 ~~l~~~~~~~g~~~~A~~~~~~~~ 413 (541)
-.+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345556666666666666666663
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.41 E-value=14 Score=35.29 Aligned_cols=186 Identities=10% Similarity=0.091 Sum_probs=118.3
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-ccHh--HHHHHHHHHHhcC
Q 048358 227 IGSYAEALDVFRQMQMV-----GIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLL-RRTV--ICNALIEMYIKCG 298 (541)
Q Consensus 227 ~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~l~~~~~~~g 298 (541)
.|++++|++.+..+.+. ...........++..|...++++.....+..+.+..-. +... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 47889999888776542 33456677888999999999999998887766554322 2221 1222233333333
Q ss_pred CH--HHHHHHHHccCC---CC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHh
Q 048358 299 CI--NQASQLFDQMVE---RD-------VVSWSTVIGGLANHGKAHKAIHLFHEMQRL--KVPPN---DITFIGLLSACA 361 (541)
Q Consensus 299 ~~--~~A~~~~~~~~~---~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~ 361 (541)
.. +.-..+...+.. .- ......|...|...|++.+|.+++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 32 223334443322 11 113356788889999999999999998643 32111 134566678889
Q ss_pred ccCcHHHHHHHHHHhhhh-cCC--CCc--HhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 362 HTGFWNEGLMYFDSMKRD-HHI--EHK--IEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 362 ~~g~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
..+++..|..++.++... ... +|+ ...+...+..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987531 111 222 234667777888889999988877665
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.30 E-value=12 Score=33.77 Aligned_cols=168 Identities=12% Similarity=0.050 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHH----HHhhhCCCCCCCCCCCcccHHH
Q 048358 47 FLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLY----KQMLRDPRTGSLILPDKFTLPF 122 (541)
Q Consensus 47 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~p~~~~~~~ 122 (541)
..|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +-+.+.++ ++|..+...
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~-----~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ-----RVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----CCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence 4677777888999999999988764 234566777776665554 45555666 788888888
Q ss_pred HHHHHhccCCch-HHHHHHHHHH----HhC--CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 048358 123 VIKSCAGLLCPS-LGKQIHAHVC----KFG--LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYAR 195 (541)
Q Consensus 123 ll~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 195 (541)
++..+.....-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|..-|-.-.+++...+..++.-+.+
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 888777665322 2223333333 334 234566777788888888999888887743222333566555555544
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 196 LGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 196 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
.+...++ +...- ..+-.|...++...|..+++...
T Consensus 180 ~~~~~e~----------dlfia-RaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHTA----------PLYCA-RAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGGH----------HHHHH-HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCccH----------HHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Confidence 4432221 11111 12234556677777777665554
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.20 E-value=4.3 Score=28.81 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048358 194 ARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVG 244 (541)
Q Consensus 194 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 244 (541)
...|++++|..+.+.+..||...|-+|.. .+.|-.+++...+.++...|
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 33444444444444444444444443332 34455555555555554444
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.14 E-value=12 Score=33.51 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHH----HHHhhhCCCCCCCCCCCcccHH
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINL----YKQMLRDPRTGSLILPDKFTLP 121 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~p~~~~~~ 121 (541)
...|.++..-|.+.+++++|.+++... ...+.+.|+...|.++ ++-..+.++ +++.....
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~-----~~~~~~~~ 96 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV-----KVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----CCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCC-----CCCHHHHH
Confidence 447777888888889999999887652 3456677887666554 455555676 78888888
Q ss_pred HHHHHHhccCCch-HHHHHHHHHH----HhCC--CCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHHHHHH
Q 048358 122 FVIKSCAGLLCPS-LGKQIHAHVC----KFGL--KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYA 194 (541)
Q Consensus 122 ~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 194 (541)
.++..+......+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|..-|-.-...+...+..++.-+.
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 8887776543211 2233444444 3332 2356777888888888899888888776332224555655555554
Q ss_pred hc---CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048358 195 RL---GQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQ 241 (541)
Q Consensus 195 ~~---~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 241 (541)
+. |...++--+ . ...+-.|...|+...|..+|+...
T Consensus 177 ~~~~~~~~~e~dlf----------~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVAEF----------F-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHHHH----------H-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHH----------H-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44 444332111 1 112223456677777777776654
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.02 E-value=20 Score=35.85 Aligned_cols=394 Identities=9% Similarity=-0.083 Sum_probs=206.2
Q ss_pred HHHHHHHHhccCC-chhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 048358 32 KIHTQILKYLLSQ-SNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTG 110 (541)
Q Consensus 32 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (541)
+|..-+.++.-.| ....-+..+..+.+.+++...+..+.. ...+...-.....+....|+..+|......+-..|
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--- 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--- 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---
Confidence 4445454543222 233445556777788888888887776 33344444556677778888888888777776665
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhHHHHH
Q 048358 111 SLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLI 190 (541)
Q Consensus 111 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 190 (541)
...+..+..++..+...|.. .....+. -+......|+...|..+...+..........++
T Consensus 133 ---~~~p~~c~~l~~~~~~~g~l----------------t~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~ 192 (618)
T 1qsa_A 133 ---KSQPNACDKLFSVWRASGKQ----------------DPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAII 192 (618)
T ss_dssp ---SCCCTHHHHHHHHHHHTTCS----------------CHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHCCCC----------------CHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444444454444433332 2222222 334556667777777776666322222223333
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH----HHHHHHccC
Q 048358 191 SGYARLGQMKKARMLFDKMPYTTIV---SWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVS----VLPACAQLG 263 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~ 263 (541)
..+..- ..+....... .++.. .+..-+.-+.+ .+.+.|...+....... ..+...... +.......+
T Consensus 193 al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~ 266 (618)
T 1qsa_A 193 SLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGND 266 (618)
T ss_dssp HHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTT
T ss_pred HHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcC
Confidence 333222 2223333322 22221 11112222333 37889999998886543 223332222 222333444
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCChHHHHHHHHH
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGKAHKAIHLFHE 340 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (541)
....+...+....... .+.....-.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|..
T Consensus 267 ~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 267 VTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2445555555544332 233334444555667899999999999996642 22233345677788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCc------HhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 048358 341 MQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHK------IEHYGCLVDLLGRAGRLDQALNIIEEMPM 414 (541)
Q Consensus 341 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 414 (541)
+... . +|..++.+ .+.|..-. . .....++. ...-..-+..+...|....|...+..+.-
T Consensus 345 ~a~~---~---~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 345 LMQQ---R---GFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHTS---C---SHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcC---C---ChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 8752 2 33333322 12221000 0 00000010 00112234567788999999887777622
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCHHHHH
Q 048358 415 KPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEP---EDTGNYVLLSNIYAKHGRWEDVS 472 (541)
Q Consensus 415 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 472 (541)
..+......+.......|..+.++....+....+. .-|..|..++.-+.+.-.++.++
T Consensus 410 ~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 410 SKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred cCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 23444444455556678888888776655443220 11234555565666555555443
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.96 E-value=2 Score=30.68 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ +...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556677778888888899999999999999999999999999999987643 334557666643
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.89 E-value=15 Score=34.25 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=25.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 321 VIGGLANHGKAHKAIHLFHEMQRLKVPPND-----ITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445555555555555555554432111111 122233344445555555555555443
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.19 E-value=3 Score=39.10 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCcHh
Q 048358 320 TVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR----DHHIEHKIE 387 (541)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~ 387 (541)
.++..+...|+++++...+..+.... +-+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556666777777777777766654 55666777777777777777777777776544 346666665
No 256
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.00 E-value=10 Score=31.25 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 048358 43 SQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHL 92 (541)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 92 (541)
.++..+-...+..+.+.+..+....+.+.+..++...-...+.++...|.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 34444444444555554544444444444444444444444444444443
No 257
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.90 E-value=11 Score=31.41 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=6.3
Q ss_pred CCcchHHHHHHHHHhcC
Q 048358 212 TTIVSWTAMISGYTHIG 228 (541)
Q Consensus 212 ~~~~~~~~l~~~~~~~g 228 (541)
++...-...+.++.+.+
T Consensus 155 ~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333333333333
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.45 E-value=11 Score=32.63 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
...+.|+.++++.....-++.. |-|...-..++..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666777776666666654 55555556666667777777777666666654
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.39 E-value=11 Score=41.15 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHH
Q 048358 188 NLISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLEL 267 (541)
Q Consensus 188 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 267 (541)
.++..+.+.+..+.+.++...... ++...-.+..+|...|++++|...|.+.- .|+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhcc
Confidence 355556666777777666555543 33333456677777888888888887653 1222111000 00000
Q ss_pred HHHHHHHHHHhC--CCccHhHHHHHHHHHHhcCCHHHHHHHHHcc----CCCCh----hHHHHHHHHHHhcCChHHHHHH
Q 048358 268 GEWIHMYCDKNH--LLRRTVICNALIEMYIKCGCINQASQLFDQM----VERDV----VSWSTVIGGLANHGKAHKAIHL 337 (541)
Q Consensus 268 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 337 (541)
+..+.... ...-..-|..++..+.+.|.++.+.++-... ...+. ..|..+...+...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00111110 0112335677788888888888777665543 12221 2578888899999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 048358 338 FHEMQRLKVPPNDITFIGLLSACAHTGFWN 367 (541)
Q Consensus 338 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 367 (541)
+..+..... -...+..|+...|..|..+
T Consensus 961 L~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 961 LMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 888776543 3456667777777666544
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.33 E-value=6.1 Score=28.01 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
..++|..+-+.+...+. ...+--.=+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 12222222455778899999999999999999998887754 467888888888888888
Q ss_pred CCCCCCHHHHHHH
Q 048358 344 LKVPPNDITFIGL 356 (541)
Q Consensus 344 ~~~~p~~~~~~~l 356 (541)
.| .|....|..=
T Consensus 97 sg-~p~~q~Fa~g 108 (115)
T 2uwj_G 97 SS-DPALADFAAG 108 (115)
T ss_dssp CS-SHHHHHHHHH
T ss_pred CC-CHHHHHHHHH
Confidence 87 6666666543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.04 E-value=19 Score=33.47 Aligned_cols=288 Identities=11% Similarity=0.024 Sum_probs=134.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCC--------CChhhHHHHHHHHHhcC-CHHHHHHHHhcC----CCCC-cc----h
Q 048358 155 ENALLDLYGKCDELIEAHKVFEEMTD--------RDIVAWNNLISGYARLG-QMKKARMLFDKM----PYTT-IV----S 216 (541)
Q Consensus 155 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~-~~----~ 216 (541)
...|...|.+.|+.++..+++..... ........+++.+.... ..+.-.++.... ...+ .+ .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888877777777654 12233444555554422 222222222221 1111 11 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHHccCChHHHHHHHHHHHHh--CCCccHhHHHH
Q 048358 217 WTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEI-----SIVSVLPACAQLGSLELGEWIHMYCDKN--HLLRRTVICNA 289 (541)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 289 (541)
=..++..|...|++.+|.+++.++.+.--+.|.. .+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 1246777888888888888887776642222222 1223334445555555555555544332 11111211111
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHH-hcCChHHHHHHHHHHH----hCCCCC---CHHHHHHHHHHHh
Q 048358 290 LIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLA-NHGKAHKAIHLFHEMQ----RLKVPP---NDITFIGLLSACA 361 (541)
Q Consensus 290 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~----~~~~~p---~~~~~~~l~~~~~ 361 (541)
+ ...-...+. ..+++..|...|-+.. +.| .| +...|..+.....
T Consensus 182 i---------------------------~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl~ 233 (394)
T 3txn_A 182 L---------------------------DLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIML 233 (394)
T ss_dssp H---------------------------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHT
T ss_pred H---------------------------HHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHc
Confidence 0 001111233 3445555544443332 111 11 1223433333222
Q ss_pred ccCcHHHHHHHH-HHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHH
Q 048358 362 HTGFWNEGLMYF-DSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPDAKIWGSLLSSCRTYSNLEIAV 438 (541)
Q Consensus 362 ~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 438 (541)
. . ..+.-.++ ....... ..|....+..++.+| +.+++.+..++++.. .+..|......+-..+. .=.+.+
T Consensus 234 ~-~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~--~Ir~~~- 306 (394)
T 3txn_A 234 G-Q-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD--TMLEQN- 306 (394)
T ss_dssp T-C-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH--HHHHHH-
T ss_pred C-C-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHH-
Confidence 1 2 11111221 1111111 246666666677665 456787777777776 23445543221111110 011122
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048358 439 IAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSM 483 (541)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 483 (541)
+.++. .|-..-.+..++..+.- ..++++..+-+|...|.
T Consensus 307 --L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 307 --LCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --HHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred --HHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 22222 35556677777777654 78899999999988774
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.79 E-value=6.7 Score=27.88 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 264 SLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
..++|..+-+.+...+. ...+--.=+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 12222222455778899999999999999999998887754 456778888888888888
Q ss_pred CCCCCCHHHHHHH
Q 048358 344 LKVPPNDITFIGL 356 (541)
Q Consensus 344 ~~~~p~~~~~~~l 356 (541)
.| .|....|..=
T Consensus 98 sg-~p~~q~Fa~g 109 (116)
T 2p58_C 98 SQ-DPRIQTFVNG 109 (116)
T ss_dssp CC-CHHHHHHHHH
T ss_pred CC-CHHHHHHHHH
Confidence 77 6666665543
No 263
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.71 E-value=5.4 Score=40.74 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=34.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048358 324 GLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSM 376 (541)
Q Consensus 324 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 376 (541)
-+...|+++-|+++-++....- |-+-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445677777777777666643 444566777777777777777777666666
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.30 E-value=15 Score=30.49 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=4.1
Q ss_pred HHHHHHHcCCC
Q 048358 157 ALLDLYGKCDE 167 (541)
Q Consensus 157 ~l~~~~~~~g~ 167 (541)
..+..+.+.|+
T Consensus 38 ~A~~~L~~~~~ 48 (211)
T 3ltm_A 38 AAAYALGKIGD 48 (211)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 33333333333
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.90 E-value=9.5 Score=31.40 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 431 YSNLEIAVIAMEHLLVL--EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 431 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
.++...+..+|..|... +...+..|...+..+...|++.+|.++++.=.+.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44466777777777653 35556677777777777777777777777776666554
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.95 E-value=5.1 Score=30.34 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHH
Q 048358 330 KAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDL 395 (541)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (541)
+.-+..+-++.+...++.|++......+.+|.+.+++..|..+|+.++.+. .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 445566677777888899999999999999999999999999999998764 3445567766643
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.64 E-value=27 Score=38.08 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=76.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---------------------
Q 048358 255 VLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVER--------------------- 313 (541)
Q Consensus 255 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 313 (541)
++..+...+..+.+..+.... +.++...-.++.+|...|++++|..+|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 334444555555544433222 223333445667778888888888888776220
Q ss_pred -----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC
Q 048358 314 -----DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPND----ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEH 384 (541)
Q Consensus 314 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 384 (541)
-..-|..++..+-+.+.++.+.++-+..++..-+.+. ..|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 0012455666666677777777666655543211111 13556666677777777776666555432 12
Q ss_pred cHhHHHHHHHHHHhcCCHHH
Q 048358 385 KIEHYGCLVDLLGRAGRLDQ 404 (541)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~ 404 (541)
-......|+..++..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 23445556665555554433
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.40 E-value=3.5 Score=35.74 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=24.6
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHh
Q 048358 429 RTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 478 (541)
.+.|++++|+..+..-++.+|.|...-..|...++-.|+|+.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555555555545555555555555555555555554444433
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.99 E-value=12 Score=26.80 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=40.9
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 401 RLDQALNIIEEM---PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 401 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+.-+..+-++.+ ..-|++......+.+|.+.+++..|.++++-+...-.+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 333444444443 56688888889999999999999999999888765444344565554
No 270
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.25 E-value=58 Score=34.26 Aligned_cols=253 Identities=11% Similarity=-0.050 Sum_probs=135.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC----Cc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCChHHHHHHHH
Q 048358 191 SGYARLGQMKKARMLFDKMPYT----TI--VSWTAMISGYTHIGSYAEALDVFRQMQMVGI-------EPDEISIVSVLP 257 (541)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~ 257 (541)
-+....|+.+++..+++..... +. ..-..+.-+....|...++..++...+...- .+....-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466788888999998877642 22 2222344455666666678887777665321 011122223333
Q ss_pred HHHccCC-hHHHHHHHHHHHHhCCCc-cHhHHHHHHHHHHhcCCHHHHHHHHHccCC-CChhH--HHHHHHHHHhcCChH
Q 048358 258 ACAQLGS-LELGEWIHMYCDKNHLLR-RTVICNALIEMYIKCGCINQASQLFDQMVE-RDVVS--WSTVIGGLANHGKAH 332 (541)
Q Consensus 258 ~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~ 332 (541)
+++..|. -+.+...+..+....-.. ....--.|...+...|+-+....++..+.+ .+... ...+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 3333342 234445555444432110 011222344556677887777777766532 22222 233334455778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 333 KAIHLFHEMQRLKVPPNDITF--IGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887642 2222211 23445688889988777788888763 23344433344445555677666677776
Q ss_pred hCC--CCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHhc
Q 048358 411 EMP--MKPDAKIWGSLLSSCRTYSNL-EIAVIAMEHLLV 446 (541)
Q Consensus 411 ~~~--~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 446 (541)
.+. ..|....-..+.-+....|+. .+++..+..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 552 233333333333333333332 567777777653
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.35 E-value=23 Score=29.03 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLFHEMQR 343 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 343 (541)
-...+.++.+.++.+....+...+.+++..+-...+.++...|. .++...+..+..
T Consensus 124 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 124 RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33334444444433322223333333444444444455555444 334444444443
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.94 E-value=18 Score=28.21 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=50.6
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 403 DQALNIIEEM-PMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVL--EPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 403 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
+.+.+.|... ..+.|..-...-+.-.....+ +.++|..+... +...+..|...+..+...|++.+|.++++.=.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344555444 344555444444433222333 67777777654 45566778888888888888888888888877
Q ss_pred hCCCcc
Q 048358 480 SKSMKK 485 (541)
Q Consensus 480 ~~~~~~ 485 (541)
+.+..|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 776555
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.05 E-value=23 Score=26.86 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 048358 412 MPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLS 459 (541)
Q Consensus 412 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 459 (541)
+.+-|++......+.+|.+.+|+..|.++++-....-.+....|..++
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 356699999999999999999999999999988765544455566554
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.46 E-value=45 Score=29.82 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHh
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHL----FHEMQRLKVPPNDITFIGLLSACA 361 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 361 (541)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345555667777888888777542 23344556666665554 444455677788777777776655
Q ss_pred ccCcHH-HHHHHHHHhh----hhcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048358 362 HTGFWN-EGLMYFDSMK----RDHH-IEHKIEHYGCLVDLLGRAGRLDQALNIIE 410 (541)
Q Consensus 362 ~~g~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 410 (541)
.-..-+ .=.++.+++. +..+ ..-++..+..+...|.+.|++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 422100 0112222221 1111 12356667888888888888888887664
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.21 E-value=47 Score=29.97 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=82.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCChHHHHHHHHHHHccCCh
Q 048358 190 ISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDV----FRQMQMVGIEPDEISIVSVLPACAQLGSL 265 (541)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 265 (541)
..=|.+.+++++|.+++-. -...+.+.|+...|.++ ++-..+.++++|..+...++..+.....-
T Consensus 42 ~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 3345555555555554322 12233444554444333 34445556777777776676666554431
Q ss_pred H-HHHHHHH----HHHHhC--CCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048358 266 E-LGEWIHM----YCDKNH--LLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAIHLF 338 (541)
Q Consensus 266 ~-~a~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 338 (541)
+ .-..+.+ +-.+.| ..-++.....+...|.+.+++.+|+..|---.++.+..+..++--+...+...
T Consensus 111 ~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~------ 184 (336)
T 3lpz_A 111 EPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH------ 184 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG------
T ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc------
Confidence 1 1122222 333333 23467778888999999999999988874222222345544433332222111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 048358 339 HEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMKR 378 (541)
Q Consensus 339 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 378 (541)
.++...-..++ -|...+++..|..+++...+
T Consensus 185 --------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11111222222 34455788888777666554
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.14 E-value=26 Score=27.76 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=32.6
Q ss_pred HHHHHHHHhc--cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCCCcc
Q 048358 437 AVIAMEHLLV--LEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKSMKK 485 (541)
Q Consensus 437 a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 485 (541)
+..+|..|.. ++...+..|...+..+...|++.+|.++++.=.+.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455666654 335556677777777777777777777777776666544
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.43 E-value=22 Score=25.29 Aligned_cols=87 Identities=10% Similarity=-0.094 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhh
Q 048358 26 NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLR 105 (541)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 105 (541)
.++.+..|-+.+...+. -..++... +..+...|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIR-ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHH-HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHH-HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55667777777777664 33333322 345678899999999999999999999987765 577888888888888888
Q ss_pred CCCCCCCCCCCcccHHH
Q 048358 106 DPRTGSLILPDKFTLPF 122 (541)
Q Consensus 106 ~~~~~~~~~p~~~~~~~ 122 (541)
+| .|....|..
T Consensus 97 sg------~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS------DPALADFAA 107 (115)
T ss_dssp CS------SHHHHHHHH
T ss_pred CC------CHHHHHHHH
Confidence 77 565555543
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.09 E-value=14 Score=35.02 Aligned_cols=61 Identities=13% Similarity=-0.038 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 048358 352 TFIGLLSACAHTGFWNEGLMYFDSMKRDH-HIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 352 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
+...+...|.+.|+++.|.+.|.++.... +...-...+-..+..+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45556666666677777777666665431 11223445556666666666666666666654
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.53 E-value=52 Score=28.79 Aligned_cols=142 Identities=8% Similarity=-0.051 Sum_probs=60.7
Q ss_pred HHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCch
Q 048358 55 VCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPS 134 (541)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 134 (541)
..+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+.- +.+.|.... .++..-.+. +...+..|+.+
T Consensus 37 ~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~--~~d~~g~t~-L~~A~~~g~~~ 109 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDS--QFDDKGNTA-LYYAVDSGNMQ 109 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTT--CCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCC--CcCCCCCcH-HHHHHHcCCHH
Confidence 34556777777777665443222211223334455566543333 333343000 112222222 22333445543
Q ss_pred HHHHHHHHHHHhCCCCchhhH---HHHHHHHHcCCChHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHh
Q 048358 135 LGKQIHAHVCKFGLKSHSITE---NALLDLYGKCDELIEAHKVFEEMTDR-DIVAWNNLISGYARLGQMKKARMLFD 207 (541)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (541)
+.+.+++.|..++.... ...+...+..|+.+-+..+++.-... +...-.+.+...+..|..+-+.-+++
T Consensus 110 ----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 110 ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp ----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 33344444544432211 23444455566666665555554332 11122333344445555555555544
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.14 E-value=27 Score=33.10 Aligned_cols=95 Identities=8% Similarity=-0.082 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHH--
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQMVE------RDVVSWSTVIGGLANHGKAHKAIHLFHEMQR---LKVPPNDITFI-- 354 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~-- 354 (541)
+...+...|.+.|+++.|.+.|.++.. .-...+-.+++.+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455566777777777777777766622 2234566667777777888888777776543 22223222111
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhc
Q 048358 355 GLLSACAHTGFWNEGLMYFDSMKRDH 380 (541)
Q Consensus 355 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 380 (541)
.-...+...+++..|-..|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11222445688888888887766543
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.04 E-value=61 Score=27.87 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=12.8
Q ss_pred HHHHHcCCChHHHHHHHhcCCC
Q 048358 53 IDVCNSGGDLAYASLLFKQVKE 74 (541)
Q Consensus 53 ~~~~~~~~~~~~A~~~~~~~~~ 74 (541)
+...++.|+++....+++.-..
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCC
Confidence 3444556666666666665443
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.04 E-value=75 Score=27.51 Aligned_cols=48 Identities=8% Similarity=-0.034 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCC
Q 048358 44 QSNFLVTKMIDVCNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNH 91 (541)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 91 (541)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 444444444555555554333333333333444444444444554444
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.02 E-value=83 Score=26.08 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=8.4
Q ss_pred HcCCChHHHHHHHhcC
Q 048358 57 NSGGDLAYASLLFKQV 72 (541)
Q Consensus 57 ~~~~~~~~A~~~~~~~ 72 (541)
++.|+++....+++.-
T Consensus 17 ~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 17 TQYGIYERCRELVEAG 32 (240)
T ss_dssp HHTTCHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHcC
Confidence 4445555555555543
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.97 E-value=56 Score=26.88 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=36.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhhH
Q 048358 130 LLCPSLGKQIHAHVCKFGLKSH-SITENALLDLYGKCDELIEAHKVFEEMTDRDIVAW 186 (541)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 186 (541)
.++......+|..|...|+-.. ...|......+-..|++.+|.++|+.-.+..+...
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3445577777777777765433 44566666777777777777777776554444333
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.78 E-value=64 Score=27.06 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=16.9
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 449 PEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
...+..|...+..+...|++.+|.++|+.=.+.+
T Consensus 147 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 147 QESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3334445555555555555555555555544443
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.38 E-value=1.8e+02 Score=29.31 Aligned_cols=216 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHh---cCChH
Q 048358 256 LPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQMVERDVVSWSTVIGGLAN---HGKAH 332 (541)
Q Consensus 256 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~ 332 (541)
...+.-.|+++.|..++-.. ...+...+...+..|.-.+- ...++..-......-+..||..|.+ ..+..
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCCHH
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHH-----------HHHHHhhhhcCCCCcHhHHHHHHH----HH
Q 048358 333 KAIHLFHEMQRLK-VPPNDITFIGLLSACAHTGFWNEGL-----------MYFDSMKRDHHIEHKIEHYGCLVD----LL 396 (541)
Q Consensus 333 ~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~~~~~l~~----~~ 396 (541)
+|+++|-.+...+ -.-.......+-......++++.-. -++++......+.........++. -+
T Consensus 374 ~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~a 453 (661)
T 2qx5_A 374 VAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRA 453 (661)
T ss_dssp HHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCC----------------HHHHHHHHHH-------HhccCCCCc
Q 048358 397 GRAGRLDQALNIIEEM-PMKPDAKIWGSLLSSCRTYSN----------------LEIAVIAMEH-------LLVLEPEDT 452 (541)
Q Consensus 397 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~----------------~~~a~~~~~~-------~~~~~~~~~ 452 (541)
...|++++|+.+|.-. ...--..+.+.++.-....-. ...|.++.+. ..+..+.+.
T Consensus 454 e~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 533 (661)
T 2qx5_A 454 DEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNK 533 (661)
T ss_dssp HHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHH
T ss_pred HHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHH
Q ss_pred chHHHHHHH-----HHhcCCHHHHHHHHHHh
Q 048358 453 GNYVLLSNI-----YAKHGRWEDVSRMRKLI 478 (541)
Q Consensus 453 ~~~~~l~~~-----~~~~g~~~~A~~~~~~m 478 (541)
.++..|... +.+.|+|++|++.++++
T Consensus 534 ~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 534 EICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.79 E-value=1e+02 Score=26.39 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=58.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc---cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh--HH
Q 048358 82 AMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF---TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT--EN 156 (541)
Q Consensus 82 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~ 156 (541)
..+...++.|+.+....++ +.|. .++.. .-.+.+...+..|+.+ +++.+++.|..++... ..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~-----~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~ 73 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGA-----NVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGA 73 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTC-----CTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCC
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCC-----CcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCC
Confidence 3455567778876554444 4443 22211 1123444445566654 4555666665554321 12
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048358 157 ALLDLYGKCDELIEAHKVFEEMTDRD---IVAWNNLISGYARLGQMKKARMLFDKMP 210 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 210 (541)
..+...+..|+.+-+..+++.-..++ ...++ .+...+..|+.+-...+++.-.
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCC
Confidence 33445556777777776666533322 21222 2334455677776666666544
No 288
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.65 E-value=1.1e+02 Score=26.53 Aligned_cols=11 Identities=9% Similarity=-0.387 Sum_probs=4.4
Q ss_pred HHHHHHHHhcC
Q 048358 390 GCLVDLLGRAG 400 (541)
Q Consensus 390 ~~l~~~~~~~g 400 (541)
...+.++.+.|
T Consensus 210 ~~A~~aL~~~~ 220 (280)
T 1oyz_A 210 IEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 33334444444
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.71 E-value=90 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCCc-hhhHHHHHHHHHcCCChHHHHHHHhhcCCCChh
Q 048358 136 GKQIHAHVCKFGLKSH-SITENALLDLYGKCDELIEAHKVFEEMTDRDIV 184 (541)
Q Consensus 136 a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 184 (541)
...+|..|...|+-.. ...|......+-..|++.+|.++|+.-.+.++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4555555555543322 334444555555555555555555554443333
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.00 E-value=83 Score=26.70 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=16.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 048358 220 MISGYTHIGSYAEALDVFRQMQM 242 (541)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~m~~ 242 (541)
-++.+....++++|..++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777888888877776543
No 291
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.95 E-value=99 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 048358 426 SSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHG 466 (541)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (541)
..|.+.|.+++|.+++++..+.++.+...-..|...-.+..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 34778888888888888877766555555555554444433
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.65 E-value=79 Score=23.78 Aligned_cols=61 Identities=13% Similarity=0.274 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGK--AHKAIHLFHEMQRLKVP 347 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~ 347 (541)
...++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4557777888888888888888886552 2233334444444332 35566777777766643
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.31 E-value=38 Score=27.61 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCCC-CCcc-------hHHHHHHHHHcCCChhHHHHHHHHhhhC
Q 048358 62 LAYASLLFKQVKE-PNVF-------LYNAMIRAYTNNHLYGLAINLYKQMLRD 106 (541)
Q Consensus 62 ~~~A~~~~~~~~~-~~~~-------~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 106 (541)
++.|+.+|+.+.+ .+.. .--..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 5789999999986 2211 1122345789999999999999997655
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.51 E-value=40 Score=26.01 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=14.4
Q ss_pred HHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcC
Q 048358 36 QILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQV 72 (541)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 72 (541)
.+.+.|+.+++.-. .++..+...+..-.|.++++.+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l 47 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKAL 47 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHH
Confidence 34444444333222 3333333334444444444444
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.10 E-value=40 Score=25.68 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=34.1
Q ss_pred hhhhcCCCCChhhH--HHHHHhcc-ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCCh
Q 048358 4 RIGALSIKELEDRF--VPILQSCE-NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDL 62 (541)
Q Consensus 4 ~m~~~g~~~~~~~~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 62 (541)
.|++.|++++..-. ..+|.... .+-.+.+|++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35567766666533 33444444 4556777777777666555555555556666666533
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.87 E-value=1.3e+02 Score=29.11 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhcCCCCCc-chHH-------HHHHHHHcCCChhHHHHHHHHhhhC
Q 048358 46 NFLVTKMIDVCNSGGDLAYASLLFKQVKEPNV-FLYN-------AMIRAYTNNHLYGLAINLYKQMLRD 106 (541)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-------~ll~~~~~~g~~~~A~~~~~~m~~~ 106 (541)
...+|.+++.|...+.++.|..+..+..-|.. .+-+ -+.+.+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34667777777777888888888877654422 2211 2334556677788887777777665
No 297
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.56 E-value=46 Score=25.87 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=38.2
Q ss_pred hhhhcCCCCChhhH--HHHHHhcc-ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCCh
Q 048358 4 RIGALSIKELEDRF--VPILQSCE-NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDL 62 (541)
Q Consensus 4 ~m~~~g~~~~~~~~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 62 (541)
.|++.|++++..-. ..+|.... .+-.+.+|++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 46677877776643 33444444 5566788888887776556666666666777777644
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.95 E-value=42 Score=26.12 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=22.6
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCC----CCCcchHHHHHHHHHcCCC
Q 048358 35 TQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK----EPNVFLYNAMIRAYTNNHL 92 (541)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~ 92 (541)
+.+.+.|+.+++.- ..++..+...++.-.|.++++.+. ..+..|-...+..+...|-
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33444444433322 233344444444444555554442 2233343344444444443
No 299
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=41.34 E-value=98 Score=29.85 Aligned_cols=55 Identities=15% Similarity=-0.013 Sum_probs=38.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048358 425 LSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIR 479 (541)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 479 (541)
.........++.|...|.++..+.|.+...|+.|+......|+.-+|.-.|-+..
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3334445566777778888888888877788888877777777766665555443
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.81 E-value=84 Score=26.68 Aligned_cols=117 Identities=11% Similarity=-0.112 Sum_probs=59.6
Q ss_pred HHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc-------cHHHHHHHHh--ccCCchHHHHHHHHHHHhC---------
Q 048358 86 AYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF-------TLPFVIKSCA--GLLCPSLGKQIHAHVCKFG--------- 147 (541)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--------- 147 (541)
..++.|+.+....+++.+.+.+. .++.. -.+.|..+.. +.|+.+-+..+++.-...+
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~-----~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKK-----RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTC-----CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCC-----CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 44567888877777777666554 33322 2333443332 5677776666665543311
Q ss_pred CCCchhhHHHHHHHHHcCCChHHHHHHHhhcCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHh
Q 048358 148 LKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVA----------------WNNLISGYARLGQMKKARMLFD 207 (541)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~ 207 (541)
+......-.+.+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 00000011223444556777777776666543322211 1223334455666666666666
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.51 E-value=1.1e+02 Score=29.62 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCcH--hHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 048358 351 ITFIGLLSACAHTGFWNEGLMYFDSMKRDHHIEHKI--EHY-GCLVDLLGRAGRLDQALNIIEEM 412 (541)
Q Consensus 351 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 412 (541)
..++.+++.|...+.++.|..+..+..--....++. ..| ..+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456677777888888888888887764200001111 111 23445566677788887776654
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.27 E-value=2.3e+02 Score=30.15 Aligned_cols=85 Identities=7% Similarity=-0.141 Sum_probs=49.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC----------------
Q 048358 356 LLSACAHTGFWNEGLMYFDSMKRDHHIEHKIEHYGCLVDLLGRAGRLDQALNIIEEM--PMKPD---------------- 417 (541)
Q Consensus 356 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~---------------- 417 (541)
++..|...|.++-+.++..-+ +.++..--.+..+|...|++++|...|++. ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 556666677776655433222 223332345677788888888888888877 22110
Q ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 048358 418 -------AKIWGSLLSSCRTYSNLEIAVIAMEHLLV 446 (541)
Q Consensus 418 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (541)
..-|..++..+.+.+-++-++++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11344555555666666666666666664
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.40 E-value=70 Score=24.95 Aligned_cols=61 Identities=13% Similarity=0.274 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 048358 287 CNALIEMYIKCGCINQASQLFDQMVERD---VVSWSTVIGGLANHGK--AHKAIHLFHEMQRLKVP 347 (541)
Q Consensus 287 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~ 347 (541)
...++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4557777888888888888888886552 2233334444444322 34566677777766643
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.96 E-value=60 Score=21.82 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=38.5
Q ss_pred chhhhcCCCCChhhHHHHHHhc---c-ChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCCh
Q 048358 3 ARIGALSIKELEDRFVPILQSC---E-NLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGDL 62 (541)
Q Consensus 3 ~~m~~~g~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 62 (541)
+.|.+.|++++.... .||... . .+-.+.++.+.+.+.+...+..+....++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 346778887777653 333333 2 3446788888887776566777777777777776643
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.94 E-value=1.6e+02 Score=24.23 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=19.4
Q ss_pred HHHHHHHhccCCch---hHHHHHHHHHHcCCChHHHHHHHhcCC
Q 048358 33 IHTQILKYLLSQSN---FLVTKMIDVCNSGGDLAYASLLFKQVK 73 (541)
Q Consensus 33 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 73 (541)
+.+.+++.|..++. ...+ .+...+..|+.+-+..+++.-.
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKAGA 68 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhCCC
Confidence 44455555554432 1122 2333445566666666666543
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.24 E-value=1.6e+02 Score=24.13 Aligned_cols=43 Identities=0% Similarity=-0.073 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCchh--HHHHHHHHHHcCCChHHHHHHHhcCCC
Q 048358 32 KIHTQILKYLLSQSNF--LVTKMIDVCNSGGDLAYASLLFKQVKE 74 (541)
Q Consensus 32 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~ 74 (541)
.+.+.+++.|..++.. .-...+...++.|+.+-+..+++....
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 3455566666554322 112344556677888888888876654
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.86 E-value=57 Score=25.79 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHcCCChHHHHHHHhcCC------CCCcchHHHHHHHHHcCCCh
Q 048358 31 KKIHTQILKYLLSQSNFLVTKMIDVCNSGGDLAYASLLFKQVK------EPNVFLYNAMIRAYTNNHLY 93 (541)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~ 93 (541)
..+.+.+.+.|+.+++. -..+++.+...++.-.|.++++.+. ..+..|-..-+..+...|-.
T Consensus 18 ~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45556666777766443 3456666666666777777776653 23444555556667776654
No 308
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.51 E-value=94 Score=26.38 Aligned_cols=87 Identities=8% Similarity=-0.028 Sum_probs=46.5
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhC--CCCCCCCCC----CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH
Q 048358 83 MIRAYTNNHLYGLAINLYKQMLRD--PRTGSLILP----DKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN 156 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (541)
-++.+....++++|++++++..+. +. ++ ........++.-.....-.-+..+.+++ .. .++.....
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~-----~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r 95 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDL-----SERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLK 95 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT-----C-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhC-----cccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHH
Confidence 467788888888888888766432 11 11 1122222333323322233333333333 22 33445555
Q ss_pred HHHHHHHcCCChHHHHHHHhh
Q 048358 157 ALLDLYGKCDELIEAHKVFEE 177 (541)
Q Consensus 157 ~l~~~~~~~g~~~~A~~~~~~ 177 (541)
..+..+.+.|+.++|.++|-+
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHH
Confidence 666777778888888777755
No 309
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.37 E-value=2.6e+02 Score=25.99 Aligned_cols=311 Identities=11% Similarity=0.019 Sum_probs=139.7
Q ss_pred HHHHHHHhccCCchhH--HHHHHHHHHcCCChHHHHHHHhcCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 048358 33 IHTQILKYLLSQSNFL--VTKMIDVCNSGGDLAYASLLFKQVKEPN---VFLYNAMIRAYTNNHLYGLAINLYKQMLRDP 107 (541)
Q Consensus 33 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 107 (541)
+.+.+++.|..++... ....+...++.|+.+-+..+++.-...+ ...++ .+...+..|+.+-+.-+++ .|
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~g 103 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTNMVKLLLE----NN 103 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHHHHHHHHH----HT
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHh----CC
Confidence 4455556666554321 1223444566688888888887654422 22222 2334455666554433333 33
Q ss_pred CCCCCCCCC---cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh--hHHHHHHHHHcCCChHHHHHHHhhcCCCC
Q 048358 108 RTGSLILPD---KFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI--TENALLDLYGKCDELIEAHKVFEEMTDRD 182 (541)
Q Consensus 108 ~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 182 (541)
. .|+ ..-.. .+...+..|+.+.... +++.+..++.. .-...+...+..|+.+-+..+++.-..++
T Consensus 104 a-----~~~~~~~~g~t-~L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 104 A-----NPNLATTAGHT-PLHIAAREGHVETVLA----LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173 (437)
T ss_dssp C-----CTTCCCTTCCC-HHHHHHHHTCHHHHHH----HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred C-----CCCCCCCCCCc-HHHHHHHcCCHHHHHH----HHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 2 222 22222 3334455566554443 34444332211 11123455567788877777776544322
Q ss_pred hh--hHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHH
Q 048358 183 IV--AWNNLISGYARLGQMKKARMLFDKMPYTTI---VSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEIS--IVSV 255 (541)
Q Consensus 183 ~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l 255 (541)
.. .-.+.+...+..|+.+-..-+++.-..++. .-++. +...+..|+.+-+..+ .+.|..++... -.+.
T Consensus 174 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~ 248 (437)
T 1n11_A 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSL----LQYGGSANAESVQGVTP 248 (437)
T ss_dssp CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCH
Confidence 11 111234445567777777666665443322 12222 3334456665544333 34443332211 1122
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCccHh--HHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCC
Q 048358 256 LPACAQLGSLELGEWIHMYCDKNHLLRRTV--ICNALIEMYIKCGCINQASQLFDQMVER---DVVSWSTVIGGLANHGK 330 (541)
Q Consensus 256 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 330 (541)
+...+..|..+.+..++ +.+..++.. .-.+.+...+..|..+-+..+++.-... +...++.| ...+..|+
T Consensus 249 L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~ 323 (437)
T 1n11_A 249 LHLAAQEGHAEMVALLL----SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGN 323 (437)
T ss_dssp HHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH-HHHHHSSC
T ss_pred HHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHH-HHHHHcCc
Confidence 33445566665554443 333332211 0112233445667777666666543222 22222233 23344566
Q ss_pred hHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCcHHHHHHHH
Q 048358 331 AHKAIHLFHEMQRLKVPPNDI---TFIGLLSACAHTGFWNEGLMYF 373 (541)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~ 373 (541)
.+-+ +.+.+.|..++.. -.+.|. .....|..+-+.-++
T Consensus 324 ~~~v----~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll 364 (437)
T 1n11_A 324 IKLV----KFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLL 364 (437)
T ss_dssp SHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred HHHH----HHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHH
Confidence 5533 3444555444432 222333 333456665444333
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.30 E-value=1.6e+02 Score=23.52 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=8.0
Q ss_pred HHHHHHHHHCCCCCC
Q 048358 234 LDVFRQMQMVGIEPD 248 (541)
Q Consensus 234 ~~~~~~m~~~~~~p~ 248 (541)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555544
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.51 E-value=2.9e+02 Score=29.26 Aligned_cols=127 Identities=10% Similarity=-0.030 Sum_probs=73.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHH
Q 048358 189 LISGYARLGQMKKARMLFDKMPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELG 268 (541)
Q Consensus 189 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 268 (541)
++..+...|..+-|.++...++. ++..--.+..+|...|++++|...|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 66677778888888887777765 44433457788999999999999998864 333322110000 0001
Q ss_pred HHHHHHHHHhCCCccHhHHHHHHHHHHhcCCHHHHHHHHHcc----CCCCh----hHHHHHHHHHHhcC
Q 048358 269 EWIHMYCDKNHLLRRTVICNALIEMYIKCGCINQASQLFDQM----VERDV----VSWSTVIGGLANHG 329 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~l~~~~~~~~ 329 (541)
..++.... .......-|..++..+.+.+.++.+.++-+.. ...|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111000 00112336777888888888888877665543 22233 25666666655443
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.33 E-value=52 Score=25.39 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=33.8
Q ss_pred hhhhcCCCCChhhH--HHHHHhccChhHHHHHHHHHHHhccCCchhHHHHHHHHHHcCCC
Q 048358 4 RIGALSIKELEDRF--VPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGGD 61 (541)
Q Consensus 4 ~m~~~g~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 61 (541)
.+++.|++++..-. ..+|.... +-.+.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 45567777766632 23444444 55677777777766655555555555666666653
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.95 E-value=2e+02 Score=23.53 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=39.6
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC-----hHHHHHHHHHHHHhCCC
Q 048358 217 WTAMISGYTH---IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGS-----LELGEWIHMYCDKNHLL 281 (541)
Q Consensus 217 ~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 281 (541)
+..+|+++.+ -.+.+.|+-++-+|++.| .|....-..++-+.-..|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445666554 478999999999999998 7776666666666554442 22334444444444543
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.05 E-value=2e+02 Score=24.90 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=24.3
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 048358 394 DLLGRAGRLDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLE 448 (541)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (541)
...+..|+.+-+.-+++.-....+...-...+...+..|+.+-+.-+++.-...+
T Consensus 134 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 134 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 3344455555444444443211121011222333345666666666666554444
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.50 E-value=2.3e+02 Score=23.13 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=32.2
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC
Q 048358 218 TAMISGYTH---IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLG 263 (541)
Q Consensus 218 ~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 263 (541)
..+|+++.+ -.+.+.|+-++-+|++.|-.|....-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345566554 4789999999999999987777666666665554433
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.13 E-value=1.6e+02 Score=23.05 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=45.9
Q ss_pred hhHHHHHHHH-hhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh--CCCCchhhHHHHHHHHHcCCCh
Q 048358 93 YGLAINLYKQ-MLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKF--GLKSHSITENALLDLYGKCDEL 168 (541)
Q Consensus 93 ~~~A~~~~~~-m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~ 168 (541)
.+.+++-+++ +.+.|. .++. .-..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~-----r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGL-----KYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTC-----CCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCC-----CCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554544 344565 4433 4456667777777788899999998887 7666766666666777777743
No 317
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.09 E-value=3.1e+02 Score=24.48 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=45.7
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 408 IIEEMPMKPD--AKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 408 ~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+|...+++|. ..+...-+..+.+.+++..|..+.+++++++|... ..++|.+++......+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 4455566774 35667777789999999999999999999998522 4566888887776553
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.49 E-value=84 Score=22.17 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHccCCCChhHHHHHHHHHHhcCChHHHH
Q 048358 298 GCINQASQLFDQMVERDVVSWSTVIGGLANHGKAHKAI 335 (541)
Q Consensus 298 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 335 (541)
...++|.+++..++...+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45778888888888888888888888887666655443
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.89 E-value=2.2e+02 Score=23.81 Aligned_cols=55 Identities=4% Similarity=-0.120 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch
Q 048358 94 GLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHS 152 (541)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 152 (541)
+.+.++|..|...|+ ..--...|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~I----G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHI----GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTC----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCc----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466778888877775 1333455666677777778888888888777777666543
No 320
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.53 E-value=2.6e+02 Score=23.09 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=42.4
Q ss_pred chHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC-----hHHHHHHHHHHHHhCCC
Q 048358 215 VSWTAMISGYTH---IGSYAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGS-----LELGEWIHMYCDKNHLL 281 (541)
Q Consensus 215 ~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 281 (541)
..+..+|+++.+ -.+.+.|+-++-+|++.|-.|....-..++-+.-.-|. +..|...++.....|.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344456666654 47899999999999999988877666666666544442 23344444444444543
No 321
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.45 E-value=3.3e+02 Score=24.26 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=44.3
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048358 408 IIEEMPMKPDA--KIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGRWEDVSRMRKLIRSKS 482 (541)
Q Consensus 408 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 482 (541)
+|...+++|.. .+...-+....+.+++..|..+.++++++.|+.. ..++|.+++......+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 44455666643 5667777778999999999999999999877521 3455777777776553
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.17 E-value=97 Score=21.83 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=20.4
Q ss_pred ChHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHH
Q 048358 167 ELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKA 202 (541)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (541)
..+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666665555566655555554544443
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.64 E-value=4.2e+02 Score=25.18 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcc
Q 048358 286 ICNALIEMYIKCGCINQASQLFDQM 310 (541)
Q Consensus 286 ~~~~l~~~~~~~g~~~~A~~~~~~~ 310 (541)
.|..-.+.+...|++++|.++--..
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3444444555566666666555444
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.53 E-value=3e+02 Score=24.78 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCC
Q 048358 156 NALLDLYGKCDELIEAHKVFEEMTDR 181 (541)
Q Consensus 156 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 181 (541)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44566666667777777777777654
No 325
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.31 E-value=2.5e+02 Score=23.84 Aligned_cols=100 Identities=7% Similarity=-0.103 Sum_probs=49.6
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCC--CCCCcccHHHHHHHHh--ccCCchHHHHHHHHHHHhC------
Q 048358 78 FLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSL--ILPDKFTLPFVIKSCA--GLLCPSLGKQIHAHVCKFG------ 147 (541)
Q Consensus 78 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g------ 147 (541)
.-.+.|. ..++.|+.+....+++.....+..... ...+..-++.|..++. +.|+.+-+..+++.-...+
T Consensus 12 ~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 12 YDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCHHHHH-HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchHHH-HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 3344444 346678888877777776655431000 0113334445555543 3577766666655533211
Q ss_pred ---CC-CchhhHHHHHHHHHcCCChHHHHHHHhhcC
Q 048358 148 ---LK-SHSITENALLDLYGKCDELIEAHKVFEEMT 179 (541)
Q Consensus 148 ---~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 179 (541)
.. .+..-. ..+...+..|+.+-+..+++.-.
T Consensus 91 ~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 91 NASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp TCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCC
Confidence 00 111222 23344456677777776666543
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.17 E-value=4.3e+02 Score=25.12 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 048358 329 GKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAHTGFWNEGLMYFDSMK 377 (541)
Q Consensus 329 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 377 (541)
.+.+-|.++. .+.|++--...|..-.+.+...|++++|-.+-....
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 4455444332 234444444445555555556666666655555444
No 327
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.01 E-value=3.9e+02 Score=24.64 Aligned_cols=361 Identities=11% Similarity=0.053 Sum_probs=162.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcc--cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh--hHHH
Q 048358 82 AMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKF--TLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSI--TENA 157 (541)
Q Consensus 82 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 157 (541)
+.+...+..|+.+ +++.+.+.|. .|+.. .....+...+..|+.+- .+.+++.|..++.. .-..
T Consensus 16 t~L~~Aa~~g~~~----~v~~Ll~~g~-----~~~~~~~~~~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t 82 (437)
T 1n11_A 16 TPLHVASFMGHLP----IVKNLLQRGA-----SPNVSNVKVETPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQT 82 (437)
T ss_dssp CHHHHHHHHTCHH----HHHHHHHTTC-----CSCCSSSCCCCHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCC
T ss_pred CHHHHHHHCCCHH----HHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCC
Confidence 4555566667654 4455555665 44432 12234445556666544 44455556544321 1123
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChH
Q 048358 158 LLDLYGKCDELIEAHKVFEEMTDRDI---VAWNNLISGYARLGQMKKARMLFDKMPYTT---IVSWTAMISGYTHIGSYA 231 (541)
Q Consensus 158 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 231 (541)
.+...+..|+.+-+.-+++.-..++. ..+ +.+...++.|+.+-...+++.-...+ ..-++ .+...+..|+.+
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~ 160 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR 160 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH
Confidence 45556677888777777776443221 112 23444566788888877777644322 11222 233345566654
Q ss_pred HHHHHHHHHHHCCCCCChHH--HHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhH--HHHHHHHHHhcCCHHHHHHHH
Q 048358 232 EALDVFRQMQMVGIEPDEIS--IVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVI--CNALIEMYIKCGCINQASQLF 307 (541)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 307 (541)
-+ +.+.+.|..|+... -.+.+...+..|+.+.+ +.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 161 ~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 161 VA----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HH----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 33 34444554443211 11233344555665543 33344444433211 112344456677777777777
Q ss_pred HccCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 048358 308 DQMVER---DVVSWSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDI---TFIGLLSACAHTGFWNEGLMYFDSMKRDHH 381 (541)
Q Consensus 308 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 381 (541)
+.-... +....+.|. ..+..|..+- ++.+.+.|..++.. ..+. +...+..|..+-+.-+++. |
T Consensus 233 ~~g~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-----g 301 (437)
T 1n11_A 233 QYGGSANAESVQGVTPLH-LAAQEGHAEM----VALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKH-----G 301 (437)
T ss_dssp HTTCCTTCCCTTCCCHHH-HHHHTTCHHH----HHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHH-----T
T ss_pred HcCCCCCCCCCCCCCHHH-HHHHCCCHHH----HHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-----C
Confidence 654322 222222222 2334555443 33344444333321 1122 2233345666544444432 2
Q ss_pred CCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchH
Q 048358 382 IEHK---IEHYGCLVDLLGRAGRLDQALNIIEEMPMKP---DAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNY 455 (541)
Q Consensus 382 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 455 (541)
..++ ....+. +...+..|+.+-+.-+++. +..+ +..-...| ......|+.+-+.-+++.-...+..+..-.
T Consensus 302 ~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~ 378 (437)
T 1n11_A 302 VMVDATTRMGYTP-LHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378 (437)
T ss_dssp CCTTCCCSSCCCH-HHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCSSSC
T ss_pred ccCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHCcCCCCCCCCCCC
Confidence 2221 111222 3334456776655555543 3222 21112222 233456776655555554333222222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048358 456 VLLSNIYAKHGRWEDVSRMRKLIRSK 481 (541)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 481 (541)
..+ ....+.|. .+..++++.....
T Consensus 379 t~l-~~A~~~g~-~~~~~~l~~~~~~ 402 (437)
T 1n11_A 379 TPL-AIAKRLGY-ISVTDVLKVVTDE 402 (437)
T ss_dssp CHH-HHHHHTTC-HHHHHHHHHHCCC
T ss_pred CHH-HHHHHcCc-HHHHHHHHhcccc
Confidence 222 22233444 4555566655443
No 328
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.72 E-value=1.5e+02 Score=29.94 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 048358 402 LDQALNIIEEMPMKPDAKIWGSLLSSCRTYSNLEIAVIAMEHLLVLEPEDTGNYVLLSNIYAKHGR 467 (541)
Q Consensus 402 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (541)
.+.|.++.+.|+ ...............|++..|.++.+.++..+|+|..+...++++|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 455666777774 222333344456688999999999999999999999988888888887763
No 329
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.16 E-value=2.8e+02 Score=22.69 Aligned_cols=180 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHH--HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH--HH
Q 048358 83 MIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLP--FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN--AL 158 (541)
Q Consensus 83 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l 158 (541)
.+...+..|+.+....+++.+.+.+. .++..... +.+...+..|+. ++++.+++.|..++..... ..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGR-----ELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCH
Q ss_pred HHHHHcCCChHHHHHHHhh------cCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCC
Q 048358 159 LDLYGKCDELIEAHKVFEE------MTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVS---WTAMISGYTHIGS 229 (541)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 229 (541)
+...+..|+.+-+..+++. -.......-.+.+...+..|+.+-...+++.-...+... -.+.+...+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHH
Q 048358 230 YAEALDVFRQMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHM 273 (541)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 273 (541)
.+-+.-+++. ...+......-.+.+...+..|..+.+..+++
T Consensus 163 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 330
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.12 E-value=60 Score=20.44 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=15.3
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCcH
Q 048358 363 TGFWNEGLMYFDSMKRDHHIEHKI 386 (541)
Q Consensus 363 ~g~~~~a~~~~~~~~~~~~~~~~~ 386 (541)
.-+++.|...|..+...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 456777777777766655566554
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.68 E-value=2.5e+02 Score=21.79 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 048358 187 NNLISGYARLGQMKKARMLFDKMPYTTI---VSWTAMISGYTHIGS--YAEALDVFRQMQMVGIEP 247 (541)
Q Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p 247 (541)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3344455555555555555555543311 122233333333222 334555666665555433
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.58 E-value=3.8e+02 Score=23.95 Aligned_cols=210 Identities=11% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHH
Q 048358 50 TKMIDVCNSGGDLAYASLLFKQVKE---PNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKS 126 (541)
Q Consensus 50 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~ 126 (541)
...+...+..|+.+-...+++.-.. .|..-++.|..+..... .++++.+.+.|. .++...-...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~-----~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC-----VDTAKYLASVGE-----VHSLWHGQKPIHL 90 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCC-----HHHHHHHHHHCC-----CCCCBTTBCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC-----CccccCCCCHHHH
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCch-------------------hhHHHHHHHHHcCC--ChHHHHHHHhhcCCCChhh
Q 048358 127 CAGLLCPSLGKQIHAHVCKFGLKSHS-------------------ITENALLDLYGKCD--ELIEAHKVFEEMTDRDIVA 185 (541)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------------------~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~ 185 (541)
.+..|+.+-+..+++.....|..++. ..-...+...+..| +.+-+..+++.-..++...
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHhc--------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH--
Q 048358 186 W--NNLISGYARLGQMKKARMLFDK--------MPYTTIVSWTAMISGYTHIGSYAEALDVFRQMQMVGIEPDEISIV-- 253 (541)
Q Consensus 186 ~--~~l~~~~~~~~~~~~A~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-- 253 (541)
. .+.+...+..|+.+-+.-+++. +...|..-++.|..+..... .++.+.+++.|..++.....
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCC
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 048358 254 SVLPACAQLGSLELGEWIHMY 274 (541)
Q Consensus 254 ~ll~~~~~~~~~~~a~~~~~~ 274 (541)
+-+...+..|..+.+..+++.
T Consensus 246 tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 246 VPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHhChHHHHHHHHHc
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.67 E-value=1.9e+02 Score=22.03 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=34.9
Q ss_pred HHHHCCCCCChHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCccHhHHHHHHHHHHhcCCH
Q 048358 239 QMQMVGIEPDEISIVSVLPACAQLGSLELGEWIHMYCDKNHLLRRTVICNALIEMYIKCGCI 300 (541)
Q Consensus 239 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (541)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3455666655433 334444444455556777777776666555565555566666666643
No 334
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.11 E-value=2.3e+02 Score=22.43 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=11.1
Q ss_pred HHcCCChHHHHHHHhcCCC
Q 048358 56 CNSGGDLAYASLLFKQVKE 74 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~ 74 (541)
.++.|+.+-+..+++.-..
T Consensus 46 A~~~~~~~~v~~Ll~~g~~ 64 (201)
T 3hra_A 46 AVHNNDIEIAKALIDRGAD 64 (201)
T ss_dssp HHHHTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 3455666666666665443
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.00 E-value=2.5e+02 Score=21.54 Aligned_cols=61 Identities=5% Similarity=-0.073 Sum_probs=39.4
Q ss_pred HhhhCCCCCCCCCCCcccHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCCh
Q 048358 102 QMLRDPRTGSLILPDKFTLPFVIKSCAGLL-CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDEL 168 (541)
Q Consensus 102 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 168 (541)
.+.+.|+ .++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 7 ~l~~~g~-----r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGL-----KVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTC-----CCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCC-----CCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3555665 44433 334555555555 6777888888888877666766666667777777654
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.79 E-value=2.4e+02 Score=21.20 Aligned_cols=59 Identities=5% Similarity=-0.102 Sum_probs=35.5
Q ss_pred hhhCCCCCCCCCCCcccHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 103 MLRDPRTGSLILPDKFTLPFVIKSCAGLL-CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 103 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
+.+.|. +++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-++.+...|-
T Consensus 9 l~~~g~-----r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGL-----KVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTC-----CCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCC-----CCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 445554 44433 334455555555 667788888888877766666665556666666654
No 337
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.69 E-value=1.5e+02 Score=19.89 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=19.9
Q ss_pred HHHhcCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHh
Q 048358 67 LLFKQVKE--PNVFLYNAMIRAYTNNHLYGLAINLYKQM 103 (541)
Q Consensus 67 ~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 103 (541)
.++++++. |++.||+.+...+-+..-..+++.+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34555553 56666666666555444444555554443
No 338
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.65 E-value=2.6e+02 Score=21.43 Aligned_cols=61 Identities=8% Similarity=-0.035 Sum_probs=38.2
Q ss_pred HhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCCh
Q 048358 102 QMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDEL 168 (541)
Q Consensus 102 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 168 (541)
.+.+.|. .++. .-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 17 ~l~~~g~-----r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGL-----KNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC-------CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCC-----CCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3555664 3333 33345555555666778888888888877666766666667777777643
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.30 E-value=76 Score=26.97 Aligned_cols=54 Identities=4% Similarity=-0.107 Sum_probs=35.2
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhh-------HHHHHHHHH--cCCChHHHHHHHhh
Q 048358 124 IKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT-------ENALLDLYG--KCDELIEAHKVFEE 177 (541)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~ 177 (541)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445677899988888888888876665332 233333322 56887777777665
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.77 E-value=1.6e+02 Score=21.98 Aligned_cols=45 Identities=11% Similarity=-0.029 Sum_probs=28.8
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 123 VIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
++..+...+..-.|.++++.+.+.++..+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444555555566777777777777666666665556666666664
No 341
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.64 E-value=16 Score=26.99 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchH
Q 048358 56 CNSGGDLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSL 135 (541)
Q Consensus 56 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 135 (541)
|.+.++++++..+..+ -..|.-.|...+.+++.+-|.++++...+.| +..+|...+-.|...=+++-
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g--------~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE--------KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC--------SHHHHHHHHHHHTTCSCTTH
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------chHHHHHHHHHHHhccChHH
Confidence 3444455444443332 2344555666667777777777777777643 55667777777776666665
Q ss_pred HHH
Q 048358 136 GKQ 138 (541)
Q Consensus 136 a~~ 138 (541)
+.+
T Consensus 83 VLE 85 (125)
T 3qil_A 83 VLE 85 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.61 E-value=1.5e+02 Score=22.42 Aligned_cols=46 Identities=13% Similarity=-0.019 Sum_probs=30.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHHHHHHHHHcCCC
Q 048358 122 FVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDE 167 (541)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 167 (541)
.++..+...+..-.|.++++.+.+.++..+..|....++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4555555555666778888888777666666665556666666664
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.53 E-value=3.3e+02 Score=22.13 Aligned_cols=179 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhhHH--HH
Q 048358 81 NAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSITEN--AL 158 (541)
Q Consensus 81 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l 158 (541)
+..+...++.|+.+....+++.-...-. .++..-.+.|..++.... .++++.+++.|..++..... ..
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~-----~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~ 76 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLAT-----RTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSP 76 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGG-----CCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhh-----cCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCH
Q ss_pred HHHHHcCCChHHHHHHHhhcCCCChhhHH--HHHHHHHhcCCHHHHHHHHhcCCCCCc--chHHHHHHHHHhcCChHHHH
Q 048358 159 LDLYGKCDELIEAHKVFEEMTDRDIVAWN--NLISGYARLGQMKKARMLFDKMPYTTI--VSWTAMISGYTHIGSYAEAL 234 (541)
Q Consensus 159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~ 234 (541)
+...+..|+.+-+..+++.-...+..... +.+...+..|+.+-+.-+++.-..++. ..-.+.+...+..|+.+
T Consensus 77 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 153 (231)
T 3aji_A 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK--- 153 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH---
T ss_pred HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH---
Q ss_pred HHHHHHHHCCCCCChHHHH--HHHHHHHccCChHHHHHHHH
Q 048358 235 DVFRQMQMVGIEPDEISIV--SVLPACAQLGSLELGEWIHM 273 (541)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~ 273 (541)
+++.+.+.|..++..... +.+...+..|+.+.+..+++
T Consensus 154 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 -MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp -HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
No 344
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.85 E-value=1.3e+02 Score=19.36 Aligned_cols=44 Identities=14% Similarity=-0.007 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048358 318 WSTVIGGLANHGKAHKAIHLFHEMQRLKVPPNDITFIGLLSACAH 362 (541)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 362 (541)
++.++..++...-.++++..+.++.+.| ..+..+|..-++..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555667777777777666 5555666555555444
No 345
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.65 E-value=78 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHH
Q 048358 93 YGLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSC 127 (541)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 127 (541)
.++|.+.|.+|++..- .++.-||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~-----V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQ-----VDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTT-----CCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcC-----CCCCCcHHHHHHHh
Confidence 3567777777776544 56667787777776
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.62 E-value=2.8e+02 Score=21.80 Aligned_cols=62 Identities=5% Similarity=-0.025 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCCCCC--CcccHHHHHH------HHhccCCchHHHHHHHHHHHh
Q 048358 79 LYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILP--DKFTLPFVIK------SCAGLLCPSLGKQIHAHVCKF 146 (541)
Q Consensus 79 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p--~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 146 (541)
.|..-+..|-. |++-+|-++|+..-.... .+ ....|..||+ ...+.|+...|..++......
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~-----~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYG-----RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTC-----SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 347
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.17 E-value=3.2e+02 Score=21.50 Aligned_cols=57 Identities=4% Similarity=-0.164 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhh
Q 048358 94 GLAINLYKQMLRDPRTGSLILPDKFTLPFVIKSCAGLLCPSLGKQIHAHVCKFGLKSHSIT 154 (541)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 154 (541)
+.+.++|..|...|+ ..--...|......+-..|++..|..+|..-++.+-.|....
T Consensus 77 ~~p~~if~~L~~~~I----G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGI----GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTS----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCc----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 347788999988876 133445677777778888999999999988888877766543
Done!