BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048359
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GOU|A Chain A, Crystal Structure Of An Rgs-rhogef From Entamoeba
Histolytica
Length = 518
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 224 TSLVPPETWVQFKMVTDVLL-ANTSTWKFDVLNVTYMTAQRKDGHSSLYYMGPKASPAPI 282
TS P + + + K T+ LL T+ + LN + +KD +S PK +P P+
Sbjct: 101 TSNAPKDVFNEAKKATEYLLYTEQYTYFINKLNANTIGTGKKDVYSLYLNQFPKTNPQPL 160
Query: 283 HRQDCSHWCLPGVPDSWNE 301
++ + + SWNE
Sbjct: 161 YKPTLNK-IIEIEKKSWNE 178
>pdb|1CID|A Chain A, Crystal Structure Of Domains 3 & 4 Of Rat Cd4 And Their
Relationship To The Nh2-Terminal Domains
Length = 177
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 118 SSEKIKTTLKVDQMDWN-SWKWKDADVLVFNTGHWGCYFQEGAEVKIEMKVE 168
+S K++ LK + + S + K V G W C EG EVK++ K++
Sbjct: 125 TSPKMRLILKQENQEARVSRQEKVIQVQAPEAGVWQCLLSEGEEVKMDSKIQ 176
>pdb|1TLW|A Chain A, Tsx Structure Complexed With Thymidine
pdb|1TLW|B Chain B, Tsx Structure Complexed With Thymidine
pdb|1TLY|A Chain A, Tsx Structure
pdb|1TLY|B Chain B, Tsx Structure
pdb|1TLZ|A Chain A, Tsx Structure Complexed With Uridine
pdb|1TLZ|B Chain B, Tsx Structure Complexed With Uridine
Length = 278
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 199 APVHFRG-----GDWRTGGSCHMETLPELGTSLVPPETWVQFKMVTDVLLANTSTWKFDV 253
APV F G G W G ME P + TD+ W F
Sbjct: 56 APVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTN---------TDLSFGPFKEWYF-A 105
Query: 254 LNVTYMTAQRKDGHSSLYYMG 274
N Y + KDG S +YMG
Sbjct: 106 NNYIYDMGRNKDGRQSTWYMG 126
>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
Length = 77
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 53 GRNQWESLLCMLSSVVPNKDSIYEVNGSPITKHKGFLVFKFKDYNCTVEYY 103
G+++WE + S+V+ K++I + NG P+ + K + TVE Y
Sbjct: 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62
>pdb|1KQN|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQO|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KR2|A Chain A, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|B Chain B, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|C Chain C, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|D Chain D, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|E Chain E, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|F Chain F, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
Length = 279
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 134 NSWKWKDADVLVFNTGHWGCYFQEGAEVK---IEMKVEHAYRRSIETVVKWIHNEVNTSK 190
N WK +D +V N G C + G + + E V +R +I V +WI N+++++K
Sbjct: 167 NLWKSEDITQIVANYG-LICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTK 225
Query: 191 TQVFFRTFAPVHF 203
+ R + +
Sbjct: 226 IRRALRRGQSIRY 238
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 134 NSWKWKDADVLVFNTGHWGCYFQEGAEVK---IEMKVEHAYRRSIETVVKWIHNEVNTSK 190
N WK +D +V N G C + G + + E V +R +I V +WI N+++++K
Sbjct: 178 NLWKSEDITQIVANYG-LICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTK 236
Query: 191 TQVFFRTFAPVHF 203
+ R + +
Sbjct: 237 IRRALRRGQSIRY 249
>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 101
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 53 GRNQWESLLCMLSSVVPNKDSIYEVNGSPITKHKGFLVFKFKDYNCTVEYY 103
G+++WE + S+V+ K++I + NG P+ + K + TVE Y
Sbjct: 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,393,908
Number of Sequences: 62578
Number of extensions: 428961
Number of successful extensions: 717
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 7
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)