BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048359
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06178|NMA1_YEAST Nicotinamide-nucleotide adenylyltransferase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NMA1 PE=1
SV=1
Length = 401
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 138 WKDADVLVFNTGHWGCYFQE--GAEVK---IEMKVEHAYRRSIETVVKWIHNEVNTSKTQ 192
W DAD L G++GC E G++V+ + + + +RR+I + + I+N+++++K +
Sbjct: 301 WADAD-LHHILGNYGCLIVERTGSDVRSFLLSHDIMYEHRRNILIIKQLIYNDISSTKVR 359
Query: 193 VFFRTFAPVHF 203
+F R V +
Sbjct: 360 LFIRRAMSVQY 370
>sp|P53204|NMA2_YEAST Nicotinamide-nucleotide adenylyltransferase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NMA2 PE=1
SV=1
Length = 395
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 138 WKDADVLVFNTGHWGCYFQE--GAEVK---IEMKVEHAYRRSIETVVKWIHNEVNTSKTQ 192
W D+D L G++GC E G++V+ + + + +RR+I + + I+N+++++K +
Sbjct: 295 WADSD-LHHILGNYGCLIVERTGSDVRSFLLSHDIMYEHRRNILIIKQLIYNDISSTKVR 353
Query: 193 VFFRTFAPVHF 203
+F R V +
Sbjct: 354 LFIRRGMSVQY 364
>sp|A3MV50|SYP_PYRCJ Proline--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM 11548
/ VA1) GN=proS PE=3 SV=1
Length = 487
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 108 LVLQSRPPAGSSEKIKTTLKVDQMDWNSWKWKDADVLVFNTGHWGCYFQEGAEVKIEMKV 167
LV ++RP EK+++ L M+W W ++A++ G Y +KI
Sbjct: 3 LVREARP--HGREKLRSNL----MEWFHWLLREAEIYDVRYPVKGAYVWRPYGMKI---- 52
Query: 168 EHAYRRSIETVVKWIHNEVNTSKTQVFFRTFAPVHFRG 205
RR++E +++ +H+E T +V F F P F G
Sbjct: 53 ----RRNVEALIRRLHDE--TGHEEVLFPVFIPYEFFG 84
>sp|Q6ZQE4|T194A_MOUSE Transmembrane protein 194A OS=Mus musculus GN=Tmem194a PE=1 SV=2
Length = 437
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 25 ATVENRFDPKLMLEKLRNKRLVFAGDSIGRNQW------------ESLLC---MLSSVVP 69
TV RFDPKL L L L F GD + R+Q SLL M+S +P
Sbjct: 151 VTVTRRFDPKLFLVFLLGLTLFFCGDLLSRSQIFYYSTGMSVGIVASLLIVIFMISKFMP 210
Query: 70 NKDSIYE--VNGSPITKHKGFLVFK 92
+ IY V G + + LVFK
Sbjct: 211 KRSPIYVILVGGWSFSLYLIQLVFK 235
>sp|Q8ZVQ9|SYP_PYRAE Proline--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC 51768 /
IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=proS PE=3
SV=1
Length = 488
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 108 LVLQSRPPAGSSEKIKTTLKVDQMDWNSWKWKDADVLVFNTGHWGCYFQEGAEVKIEMKV 167
L+ ++RP S EK+K+ L ++W W ++A++ G Y +KI
Sbjct: 3 LIREARP--HSREKLKSNL----IEWFHWLLREAELYDVRYPVKGAYVWRPYGMKI---- 52
Query: 168 EHAYRRSIETVVKWIHNEVNTSKTQVFFRTFAPVHFRGGD 207
RR++E +++ H+E T +V F F P F G +
Sbjct: 53 ----RRNVENLIRKFHDE--TGHEEVLFPVFIPYEFFGKE 86
>sp|B0G170|PKS28_DICDI Probable polyketide synthase 28 OS=Dictyostelium discoideum GN=pks28
PE=3 SV=1
Length = 2690
Score = 31.6 bits (70), Expect = 7.8, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 42 NKRLVFAGDSIGRNQWESLLCMLSSVVPNKDSIYEV--NGSPITKHKGFLVFKFKDYNCT 99
N +L+F ++S+ C S P+ DS E+ + S + + K + +Y T
Sbjct: 1622 NGQLLFVEPPYKSINYDSVFCCFSQWWPSSDSDTELRPDRSCMNQDKWIKILNETNYRDT 1681
Query: 100 VEYYRAPFLVL-QSRPPAGSS--EKIKTTLKVDQMDWNSWKWKDADVLVFNTGHWGCYFQ 156
+ + L Q+R P+ + K + +DQ +NS+ ++++F ++GC Q
Sbjct: 1682 IISGNDNLIFLIQTRKPSINEIISKQSSDSSLDQ--FNSFN----NIILFGNNNYGCSLQ 1735
Query: 157 EGAEVKIEMKVEHAYRRSIETVVKWIHNEVNTS------KTQ-VFFRTFAPVH 202
E+K + + WI N + S KT +F ++ P++
Sbjct: 1736 NSISSNQELKSKTININNFNEFQTWIANNYDNSDDFDNNKTLIIFLKSIEPIN 1788
>sp|A1RSR6|SYP_PYRIL Proline--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=proS PE=3 SV=1
Length = 488
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 123 KTTLKVDQMDWNSWKWKDADVLVFNTGHWGCYFQEGAEVKIEMKVEHAYRRSIETVVKWI 182
K LK + ++W W ++A++ G Y +K+ RR++E +++ I
Sbjct: 12 KDKLKTNLIEWFHWLLREAELYDVRYPVKGAYVWRPYGMKL--------RRNVENLIRRI 63
Query: 183 HNEVNTSKTQVFFRTFAPVHF 203
H+E T +V F F P F
Sbjct: 64 HDE--TGHEEVLFPVFIPYEF 82
>sp|P06332|CD4_MOUSE T-cell surface glycoprotein CD4 OS=Mus musculus GN=Cd4 PE=1 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 118 SSEKIKTTLKVDQMDWN-SWKWKDADVLVFNTGHWGCYFQEGAEVKIEMKVEHAYRRSIE 176
+S K++ TLK + + S + K V+ TG W C EG +VK++ +++ R +
Sbjct: 334 TSPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVNQ 393
Query: 177 TV 178
TV
Sbjct: 394 TV 395
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,065,817
Number of Sequences: 539616
Number of extensions: 5169091
Number of successful extensions: 9111
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9110
Number of HSP's gapped (non-prelim): 8
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)