BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048360
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 107/245 (43%), Gaps = 89/245 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL K + GG R+ EIG+ +RNEG+DLTH PE T
Sbjct: 224 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 283
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV + GS K+ YH +GPE + ++DF PPFR+++M+ E+E+ + +P+
Sbjct: 284 EITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPET 343
Query: 99 FLL-----------------------------------------MLLPKLSTDH---MSP 114
L + P DH MSP
Sbjct: 344 NLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 403
Query: 115 LAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151
LAK HRSK GLT R ELFV K+E + GD EAM ID
Sbjct: 404 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDE 463
Query: 152 SFCTA 156
+FCTA
Sbjct: 464 NFCTA 468
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 107/245 (43%), Gaps = 89/245 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL K + GG R+ EIG+ +RNEG+DLTH PE T
Sbjct: 224 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 283
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV + GS K+ YH +GPE + ++DF PPFR+++M+ E+E+ + +P+
Sbjct: 284 EITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPET 343
Query: 99 FLL-----------------------------------------MLLPKLSTDH---MSP 114
L + P DH MSP
Sbjct: 344 NLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 403
Query: 115 LAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151
LAK HRSK GLT R ELFV K+E + GD EAM ID
Sbjct: 404 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDE 463
Query: 152 SFCTA 156
+FCTA
Sbjct: 464 NFCTA 468
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 93/240 (38%), Gaps = 91/240 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW------------- 47
+++Y+R++PEL LKR + GGF R+ EI + +RNEG+ + H PE TM
Sbjct: 231 LDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLI 290
Query: 48 ---------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEME--RPAN---- 92
+ E+ G+ K+ Y + DF PF KL M ++ RP
Sbjct: 291 ELTESLFRTLAQEVLGTTKVTYGEH-------VFDFGKPFEKLTMREAIKKYRPETDMAD 343
Query: 93 ---------------ICMPKIFLL---------------MLLPKLSTDH---MSPLAKGH 119
I + K + L ++ P T++ +SPLA+ +
Sbjct: 344 LDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRN 403
Query: 120 RSKPGLTLRLELFV------------NKREDQ-----------QMGDSEAMVIDGSFCTA 156
P +T R E F+ N EDQ GD EAM D + TA
Sbjct: 404 DVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTA 463
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 91/240 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW------------- 47
+++Y+R++PEL LKR + GGF R+ EI + +RNEG+ + H PE TM
Sbjct: 231 LDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLI 290
Query: 48 ---------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDM--------------- 83
+ ++ G ++ Y + +DF PF KL M
Sbjct: 291 ELTESLFRTLAQDILGKTEVTYGD-------VTLDFGKPFEKLTMREAIKKYRPETDMAD 343
Query: 84 ---------IAE-----MERPANI--CMPKIF-----LLMLLPKLSTDH---MSPLAKGH 119
IAE +E+ + + +IF ++ P T++ +SPLA+ +
Sbjct: 344 LDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRN 403
Query: 120 RSKPGLTLRLELFV------------NKREDQ-----------QMGDSEAMVIDGSFCTA 156
P +T R E F+ N EDQ GD EAM D + TA
Sbjct: 404 DVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTA 463
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 88/244 (36%), Gaps = 95/244 (38%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM- 48
ME+++R++PEL LKR I GGF R+ EI + +RNEG+ H PE TM W+
Sbjct: 252 MEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLM 311
Query: 49 ----------VMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPA-----NI 93
++ G+ I+Y E+D PF +L + +++ A
Sbjct: 312 DFTERLIRQAAVDALGTATIQYQGR-------ELDLAQPFHRLTITQAIQKYAPSYTDGQ 364
Query: 94 CMPKIFLLMLLPKLSTD--------------------------------------HMSPL 115
FL L +L D +SPL
Sbjct: 365 LSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPL 424
Query: 116 AKGHRSKPGLTLRLELFVNKR------------EDQ-----------QMGDSEAMVIDGS 152
A+ + G+T R ELF+ R EDQ GD EAM D
Sbjct: 425 ARESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDAD 484
Query: 153 FCTA 156
+ A
Sbjct: 485 YIRA 488
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 67/197 (34%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW------------- 47
M LYMR++ EL+LKR I GG ++ EIG+ +RNEG+ H PE TM
Sbjct: 222 MTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIM 281
Query: 48 ---------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANIC---- 94
+ E+ G+ KI+Y + +D P +R+L M+ ++ +
Sbjct: 282 KLTENLIAHIATEVLGTTKIQYGEHL-------VDLTPEWRRLHMVDAIKEYVGVDFWRQ 334
Query: 95 --------MPKIFLLMLLPKLSTDH--------------------------MSPLAKGHR 120
+ K + + P ++ H +SPLAK +
Sbjct: 335 MSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNP 394
Query: 121 SKPGLTLRLELFVNKRE 137
P T R ELF+ RE
Sbjct: 395 DDPRFTDRFELFIVGRE 411
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM 46
+ LY+ SPE ++KR +A G + ++ + +RNE M H PE TM
Sbjct: 70 INLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTM 115
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM 46
M L++ SPE ++KR + G + ++ + +RNE M H PE TM
Sbjct: 72 MNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTM 117
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM 46
M L++ SPE ++KR + G + ++ + +RNE M H PE TM
Sbjct: 89 MNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTM 134
>pdb|3AQO|A Chain A, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|B Chain B, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|C Chain C, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|D Chain D, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
Length = 229
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 139 QQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLV 185
Q +G A+V+DG TA +Q I+ +I+G+S V E E LV
Sbjct: 164 QNIGKRLAIVLDGRVYTAPVIRQAITGGQAVIEGLSSVEEASEIALV 210
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 23 RLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYH 61
R+ EIG CYR E HL E TM + EL + R+
Sbjct: 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQ 189
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 23 RLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSCKIRYH 61
R+ EIG CYR E HL E TM + EL + R+
Sbjct: 171 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQ 209
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 4 YMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD----LTHLPELTMWMVME 51
Y+ SP+ N ++ I F R+ EIG +R E + +T L M M E
Sbjct: 227 YLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFE 278
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 4 YMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD----LTHLPELTMWMVME 51
Y+ SP+ N ++ I F R+ EIG +R E + +T L M M E
Sbjct: 230 YLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFE 281
>pdb|3AQP|A Chain A, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
pdb|3AQP|B Chain B, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
Length = 741
Score = 31.6 bits (70), Expect = 0.30, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 139 QQMGDSEAMVIDGSFCTAHAKKQTISYFATLIDGVSFVTETKERHLV 185
Q +G A+V+DG TA +Q I+ +I+G+S V E E LV
Sbjct: 198 QNIGKRLAIVLDGRVYTAPVIRQAITGGQAVIEGLSSVEEASEIALV 244
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 23 RLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSC 56
++ EIG CYR E HL E TM + ++ C
Sbjct: 157 KIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC 190
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 YMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDL-THLPEL 44
Y+ SP+L + +I G FR++ E+G +R E + HL E
Sbjct: 293 YLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEF 334
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 SPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT 45
SP+ + + GG R ++ +CYR+EG PE T
Sbjct: 203 SPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFT 240
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 8 SPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT 45
SP+L + + GF R +I KC+R+E + PE T
Sbjct: 193 SPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFT 230
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 8 SPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT 45
SP+L + + GF R +I KC+R+E + PE T
Sbjct: 193 SPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFT 230
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 23 RLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSC 56
++ EIG CYR E HL E TM ++ C
Sbjct: 158 KIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGC 191
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 23 RLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSC 56
++ EIG CYR E HL E TM ++ C
Sbjct: 158 KIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGC 191
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 76 PPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNK 135
PPF + ++ +++ P +I + LL L ++TDH+SP R+ P +
Sbjct: 665 PPFFE-NLTLDLQPPKSI-VDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTP 722
Query: 136 REDQQMGD---SEAMVIDGSF 153
RE G ++A++ G+F
Sbjct: 723 REFNSYGSRRGNDAIMARGTF 743
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 76 PPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNK 135
PPF + ++ +++ P +I + LL L ++TDH+SP R+ P +
Sbjct: 645 PPFFE-NLTLDLQPPKSI-VDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTP 702
Query: 136 REDQQMGD---SEAMVIDGSF 153
RE G ++A++ G+F
Sbjct: 703 REFNSYGSRRGNDAVMARGTF 723
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 8 SPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT 45
SP+L + + G R +I +C+R+E + P+ T
Sbjct: 199 SPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFT 236
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 11/139 (7%)
Query: 41 LPELTMWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICM----- 95
+PE M +V K C++ GP PI F RKLD++ + + C
Sbjct: 259 MPEKYMNLVFPRK-LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317
Query: 96 PKIFLLMLLPKLSTDHMSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAMVIDGSFCT 155
P + +L + + LA+ K LR+E ++Q M D E +V
Sbjct: 318 PNLEVLETRNVIGDRGLEVLAQ--YCKQLKRLRIE---RGADEQGMEDEEGLVSQRGLIA 372
Query: 156 AHAKKQTISYFATLIDGVS 174
Q + Y A + ++
Sbjct: 373 LAQGCQELEYMAVYVSDIT 391
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 23 RLCEIGKCYRNEGMDLTHLPELTMWMVMELKGSC 56
++ EIG CYR E HL E T + C
Sbjct: 158 KIFEIGPCYRKESDGKEHLEEFTXLNFCQXGSGC 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,925,700
Number of Sequences: 62578
Number of extensions: 226842
Number of successful extensions: 498
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 34
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)