BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048360
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43776|SYK_SOLLC Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1
Length = 588
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 121/242 (50%), Gaps = 87/242 (35%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM--------------- 46
EL +RVSPEL LK+ + GGF R+ E+GK +RNEGMDLTH PE TM
Sbjct: 307 ELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMD 366
Query: 47 -------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK-- 97
MV +L GS KIRYH+NG +NEPIEIDF PPFRK+DM++E+E+ ANI +P+
Sbjct: 367 LTEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDMLSELEKVANISIPRDL 426
Query: 98 -------------------------------------IFLLMLLPKLSTDH---MSPLAK 117
I + + P +H MSPLAK
Sbjct: 427 SSESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNCINPTFIINHPEIMSPLAK 486
Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
RS+PGLT R LFVN+RE D+Q+GD EAM +D SF
Sbjct: 487 SRRSEPGLTERFNLFVNRRELCDAYTELNDPTAQRERFAEQLKDRQLGDDEAMDLDESFI 546
Query: 155 TA 156
TA
Sbjct: 547 TA 548
>sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800
PE=2 SV=1
Length = 602
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 114/243 (46%), Gaps = 87/243 (35%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL LK + GG R+ EIGK +RNEG+DLTH PE T
Sbjct: 319 MRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLI 378
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV EL G KI+YH+NG E PIEIDF PPFRK+DMI E+E A + +PK
Sbjct: 379 ELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDMIEELEAMAKLNIPKD 438
Query: 99 F----------------------------LLMLL-----------PKLSTDH---MSPLA 116
LL L P +H MSPLA
Sbjct: 439 LSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLA 498
Query: 117 KGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSF 153
K HRS+PGLT R ELFVNK E D+Q GD EAM +D +F
Sbjct: 499 KWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQLKDRQSGDDEAMALDETF 558
Query: 154 CTA 156
CTA
Sbjct: 559 CTA 561
>sp|Q9ZPI1|SYK_ARATH Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1
Length = 626
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 114/243 (46%), Gaps = 87/243 (35%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL LK+ I GG R+ EIGK +RNEG+DLTH PE T
Sbjct: 328 MRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLM 387
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV EL G KI+Y++NG + +PIEIDF PPFR+++MI E+E+ A + +PK
Sbjct: 388 EMTEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEMIGELEKVAKLNIPKD 447
Query: 99 F-------------------------LLMLLPKLSTDH-----------------MSPLA 116
LL KL + MSPLA
Sbjct: 448 LASEEANKYLIDACARFDVKCPPPQTTARLLDKLVGEFLEPTCVNPTFIINQPEIMSPLA 507
Query: 117 KGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSF 153
K HRSK GLT R ELF+NK E D+Q GD EAM +D +F
Sbjct: 508 KWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETF 567
Query: 154 CTA 156
C A
Sbjct: 568 CNA 570
>sp|P37879|SYK_CRIGR Lysine--tRNA ligase OS=Cricetulus griseus GN=KARS PE=1 SV=1
Length = 597
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 106/245 (43%), Gaps = 89/245 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL K + GG R+ EIG+ +RNEG+DLTH PE T
Sbjct: 292 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 351
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV + GS KI YH +GPE E EIDF PPFR++ M+ E+E+ + +P+
Sbjct: 352 EITEKMLSGMVKSITGSYKITYHPDGPEGEAYEIDFTPPFRRISMVEELEKALGVKLPET 411
Query: 99 FLLM-----------------------------------------LLPKLSTDH---MSP 114
L + P DH MSP
Sbjct: 412 SLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 471
Query: 115 LAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151
LAK HRSK GLT R ELFV K+E + GD EAM ID
Sbjct: 472 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDE 531
Query: 152 SFCTA 156
+FCTA
Sbjct: 532 NFCTA 536
>sp|Q99MN1|SYK_MOUSE Lysine--tRNA ligase OS=Mus musculus GN=Kars PE=1 SV=1
Length = 595
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 106/245 (43%), Gaps = 89/245 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL K + GG R+ EIG+ +RNEG+DLTH PE T
Sbjct: 290 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 349
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV + GS KI YH +GPE + E+DF PPFR++ M+ E+E+ + +P+
Sbjct: 350 EITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKALGVKLPET 409
Query: 99 FLLM-----------------------------------------LLPKLSTDH---MSP 114
L + P DH MSP
Sbjct: 410 SLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFICDHPQIMSP 469
Query: 115 LAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151
LAK HRSK GLT R ELFV K+E + GD EAM ID
Sbjct: 470 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDE 529
Query: 152 SFCTA 156
+FCTA
Sbjct: 530 NFCTA 534
>sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3
Length = 597
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 107/245 (43%), Gaps = 89/245 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M LYMR++PEL K + GG R+ EIG+ +RNEG+DLTH PE T
Sbjct: 292 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 351
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
MV + GS K+ YH +GPE + ++DF PPFR+++M+ E+E+ + +P+
Sbjct: 352 EITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPET 411
Query: 99 FLLM-----------------------------------------LLPKLSTDH---MSP 114
L + P DH MSP
Sbjct: 412 NLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 471
Query: 115 LAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151
LAK HRSK GLT R ELFV K+E + GD EAM ID
Sbjct: 472 LAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDE 531
Query: 152 SFCTA 156
+FCTA
Sbjct: 532 NFCTA 536
>sp|Q22099|SYK_CAEEL Lysine--tRNA ligase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1
Length = 572
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 105/246 (42%), Gaps = 90/246 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M L++RV+PEL K + GG R+ E+G+ +RNEG+DLTH PE T
Sbjct: 271 MNLFLRVAPELYHKMLVVGGIDRVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVI 330
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPI-EIDFMPPFRKLDMI--------AEMER 89
MVM +KG+ KI YH NGP EP+ E+DF PPF+++ M A +
Sbjct: 331 QLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYDGLAEKLGATLPD 390
Query: 90 PANI-------------------CMPKIFLLMLLPKLSTDH-----------------MS 113
P+ + C LL KL ++ MS
Sbjct: 391 PSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPTFLIGHPQIMS 450
Query: 114 PLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVID 150
PLAK HRS PGLT R ELF RE D+ GD EA +ID
Sbjct: 451 PLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDKDAGDDEAQMID 510
Query: 151 GSFCTA 156
+FC A
Sbjct: 511 ETFCNA 516
>sp|Q9UUE6|SYKC_SCHPO Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1
Length = 591
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 101/245 (41%), Gaps = 89/245 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------- 45
M+LYMR++PEL LK + GG R+ EIG+ +RNEG DLTH PE T
Sbjct: 296 MDLYMRIAPELYLKMLVVGGLDRVYEIGRQFRNEGADLTHNPEFTSIEFYQAYADYYDLM 355
Query: 46 -------MWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI----- 93
+V +L GS K+ YH GPE E+DF P+R+++MI +E N
Sbjct: 356 DTTEELLSGLVKDLTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEYLEEKLNTKFPPG 415
Query: 94 ----------------------CMPKIFLLMLLPKLSTDH-----------------MSP 114
C P LL KL + MSP
Sbjct: 416 DQLHTPEANAFLRDLCAKHGVECAPPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSP 475
Query: 115 LAKGHRSKPGLTLRLELFVNKRE------------DQQ-----------MGDSEAMVIDG 151
LAK HRS GL R E FV +E DQ+ GD EA +ID
Sbjct: 476 LAKYHRSDAGLCERFEAFVATKEICNAYTELNDIFDQRARFEEQARQKAQGDDEAQIIDE 535
Query: 152 SFCTA 156
+FCTA
Sbjct: 536 NFCTA 540
>sp|Q8SS56|SYKC_ENCCU Probable lysine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU04_0580 PE=3 SV=1
Length = 440
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 103/246 (41%), Gaps = 90/246 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------- 45
++LYMRVSPEL LK+ + GG R+ EIGK +RNEG+DLTH PE T
Sbjct: 155 LDLYMRVSPELYLKKLVVGGLERVYEIGKQFRNEGIDLTHNPEFTSCEFYMAYADYNDLM 214
Query: 46 -------MWMVMELKGSCKIRYHSNGPE--NEPIEIDFMPPFRKLDMIAEM--------- 87
MV + G+ I Y E E +E+ F PFR + ++ E+
Sbjct: 215 EMTEELISGMVENMFGTDTIVYSPKKREERTESVELSFKRPFRVISILEELNARLGLDLS 274
Query: 88 ------------------------ERPANI--CMPKIFLLMLLPK-----LSTDH---MS 113
E+P + + K+ ++ P+ DH MS
Sbjct: 275 GETLDREETLEKLLSACDKEGLSVEKPRTLSRVLDKLIGHVIEPQCVNPTFVKDHPIAMS 334
Query: 114 PLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVID 150
PLAK HRSK GLT R ELF+N +E D GD EAM+ D
Sbjct: 335 PLAKNHRSKAGLTERFELFINCKEICNAYTELNNPFEQRERFLQQTQDLNAGDDEAMMND 394
Query: 151 GSFCTA 156
FCTA
Sbjct: 395 EDFCTA 400
>sp|C4V8R9|SYKC_NOSCE Probable lysine--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain
BRL01) GN=NCER_100909 PE=3 SV=1
Length = 514
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 104/247 (42%), Gaps = 92/247 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------M 46
M L++R++PEL LK+ + GG R+ EIGK +RNEG+DLTH PE T M
Sbjct: 226 MNLFLRIAPELYLKKLVIGGMDRVYEIGKLFRNEGIDLTHNPEFTACEFYMAYADYNDMM 285
Query: 47 WMVME--------LKGSCKIRYHSNGPENE--PIEIDFMPPFRKLDMIAEMERPANICM- 95
M E L GS KI Y N E E P+EI+F PF + M+ E+ + I +
Sbjct: 286 NMAEEMLNGMCKYLHGSEKIVYAPNKREKEVKPVEINFARPFARFHMLEELSKVVGIKLD 345
Query: 96 --------------------------PKIFLLMLLPKLSTDHM----------------- 112
PK L +L KL +
Sbjct: 346 GLNINSDETLDLLIETCDKYEIKVEQPKT-LTRVLDKLVGHFIEPKCINPSFIIGYPLVT 404
Query: 113 SPLAKGHRSKPGLTLRLELFVNKRE------------DQQM-----------GDSEAMVI 149
SPLAK HRS+ G+ R ELF+N +E +Q+M GD EAM+
Sbjct: 405 SPLAKNHRSEAGMVERFELFINGKEICNAYTELNNPIEQRMRFKMQAQDINDGDDEAMIT 464
Query: 150 DGSFCTA 156
D FC A
Sbjct: 465 DEDFCVA 471
>sp|P15180|SYKC_YEAST Lysine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=KRS1 PE=1 SV=2
Length = 591
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 108/246 (43%), Gaps = 91/246 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
M++YMR++PEL LK+ + GG R+ EIG+ +RNEG+D+TH PE T
Sbjct: 295 MDMYMRIAPELFLKQLVVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLM 354
Query: 47 --------WMVMELKGSCKIRYHSN--GPENEPIEIDFMPPFRKLDMIAEMERPANI--- 93
MV E+ GS I+YH + P E +E++F P+++++MI E+E+ N+
Sbjct: 355 DMTELMFSEMVKEITGSYIIKYHPDPADPAKE-LELNFSRPWKRINMIEELEKVFNVKFP 413
Query: 94 ------------------------CMPKIFLLMLLPKLSTD----------------HMS 113
C P + +L KL + MS
Sbjct: 414 SGDQLHTAETGEFLKKILVDNKLECPPPLTNARMLDKLVGELEDTCINPTFIFGHPQMMS 473
Query: 114 PLAKGHRSKPGLTLRLELFVNKRE------------DQQ-----------MGDSEAMVID 150
PLAK R +PGL R E+FV +E DQ+ GD EA ++D
Sbjct: 474 PLAKYSRDQPGLCERFEVFVATKEICNAYTELNDPFDQRARFEEQARQKDQGDDEAQLVD 533
Query: 151 GSFCTA 156
+FC A
Sbjct: 534 ETFCNA 539
>sp|A9CS74|SYKC_ENTBH Probable lysine--tRNA ligase, cytoplasmic OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_25548 PE=3 SV=1
Length = 518
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 100/245 (40%), Gaps = 91/245 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------M 46
++LY+RV+PEL LK+ + GG R+ EIGK +RNEG+DLTH PE T M
Sbjct: 230 IDLYLRVAPELFLKQLVVGGLERVFEIGKNFRNEGIDLTHNPEFTAIEFYMAYADYNDLM 289
Query: 47 WMVMEL--------KGSCKIRYHSNGPENEP---IEIDFMPPFRKLDMIAEMERPANICM 95
+V EL KGS K Y E + +DF PF+++D++ E+ + NI +
Sbjct: 290 CIVEELLSGLVKLIKGSSKFIYQPCKRETIDEIKVPLDFSTPFKRIDILEELNKSLNIEL 349
Query: 96 ---------------------------PKIFLLML-------------LPKLSTDH---M 112
PK ML P T M
Sbjct: 350 TGENIEKPETLELLIKKAEELNIIVNNPKTLNRMLDAFIGEYIEPQCINPTFVTGFPICM 409
Query: 113 SPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVI 149
SPLAK HRSK G+T R E+F N +E D GD EAM
Sbjct: 410 SPLAKDHRSKAGITERFEMFCNGKELVNAYTELNIPDLQRKRFLMQDADANAGDDEAMPN 469
Query: 150 DGSFC 154
D FC
Sbjct: 470 DEDFC 474
>sp|A6L7P5|SYK_BACV8 Lysine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM
1447 / NCTC 11154) GN=lysS PE=3 SV=1
Length = 576
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 101/238 (42%), Gaps = 89/238 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT-----------MWMV 49
M LYMR++ EL LKR I GGF + EIGK +RNEGMD TH PE T WM+
Sbjct: 231 MPLYMRIASELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMEIYVAYKDYNWMM 290
Query: 50 -----------MELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEM----------- 87
+++ G+ +++ N IDF P++++ M+ +
Sbjct: 291 EFTEKMIEKICLDVNGTTQVKVGDNI-------IDFKAPYKRVTMLDSIKEHTGYDLTGM 343
Query: 88 --ERPANIC----------------MPKIF-----LLMLLPKLSTDH---MSPLAKGHRS 121
E+ +C + +IF + P TD+ MSPL K HRS
Sbjct: 344 NEEQIREVCQKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPKEMSPLTKIHRS 403
Query: 122 KPGLTLRLELFVNKRE------------------DQQM-----GDSEAMVIDGSFCTA 156
P LT R EL VN +E ++QM GD EAM+ID F A
Sbjct: 404 NPDLTERFELMVNGKELCNAYSELNDPIDQLERFEEQMKLSEKGDDEAMIIDKDFVRA 461
>sp|Q8A5W4|SYK_BACTN Lysine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=lysS
PE=3 SV=1
Length = 576
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 99/232 (42%), Gaps = 76/232 (32%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT-----------MWMV 49
++LY+R++ EL LKR I GGF + EIGK +RNEGMD TH PE T WM+
Sbjct: 231 IDLYLRIATELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMELYVQYKDYNWMM 290
Query: 50 -MELKGSCKIRYHSNGPENEPIE---IDFMPPFRK---LDMIAEM----------ERPAN 92
K +I NG ++ I F P+R+ LD I E E
Sbjct: 291 SFTEKLLERICIAVNGSTETVVDGKTISFKAPYRRLPILDAIKEKTGYDLNGKSEEEIRQ 350
Query: 93 IC----MPKIFLLM------------------LLPKLSTDH---MSPLAKGHRSKPGLTL 127
IC M +I M + P TD+ MSPL K HRSKPGLT
Sbjct: 351 ICKELKMEEIDDTMGKGKLIDEIFGEFCEGSYIQPTFITDYPVEMSPLTKMHRSKPGLTE 410
Query: 128 RLELFVNKRE------------DQQ-----------MGDSEAMVIDGSFCTA 156
R EL VN +E DQ+ GD EAM+ID F A
Sbjct: 411 RFELMVNGKELANAYSELNDPLDQEERFKEQMRLADKGDDEAMIIDQDFLRA 462
>sp|A0KNK7|SYK_AERHH Lysine--tRNA ligase OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=lysS PE=3 SV=1
Length = 511
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 86/240 (35%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW------------- 47
+++Y+R++PEL LKR + GGF R+ EI + +RNEG+ + H PE TM
Sbjct: 233 IDMYLRIAPELYLKRLVVGGFERVYEINRNFRNEGISVRHNPEFTMLEFYMAYADYIDLM 292
Query: 48 ---------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMI-------------- 84
+ ++ G KIRY G E + IDF PF++L M+
Sbjct: 293 DLTEEMLRTLAQDILGDTKIRYAKEGEEG--LTIDFGQPFQRLSMVDSILKYNPDVTRDD 350
Query: 85 -AEMERPANIC----------------MPKIFL-----LMLLPKLSTDH---MSPLAKGH 119
A +E+ + + IF ++L P T++ +SPLA+ +
Sbjct: 351 LATLEKATAVAKRLHIELMKSWELGHVITAIFEETVEHMLLQPTFITEYPAAVSPLARRN 410
Query: 120 RSKPGLTLRLELFVNKRE----------------------DQQ-MGDSEAMVIDGSFCTA 156
P +T R E F+ RE DQ+ GD EAM D F TA
Sbjct: 411 DQNPDVTDRFEFFIGGRELANGFSELNDAEDQAERFQAQVDQKAAGDDEAMFYDADFVTA 470
>sp|O67258|SYK_AQUAE Lysine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=lysS PE=3
SV=1
Length = 597
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 97/239 (40%), Gaps = 91/239 (38%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM--------------- 46
ELY+R++PEL LKR I GGF R+ EIGK +RNE +D TH PE TM
Sbjct: 319 ELYLRIAPELYLKRLIVGGFPRVYEIGKNFRNESVDRTHNPEFTMVEFYAAYWDYHDLIK 378
Query: 47 -------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKL------------------ 81
+++ + G+ K++Y E+DF PPF+K+
Sbjct: 379 FTEDMFVYLLEKTLGTLKVKYGE-------WELDFSPPFKKVRYFDLLKEKTGKDKDFFL 431
Query: 82 -------DMIAEMERPANICMPKIFLL-----------MLLPKLSTDH---MSPLAKGHR 120
+ E+E P M LL ++ P D +SPLAK HR
Sbjct: 432 KDLEGLRKLAKELEIPDVERMTHAKLLDKVFEKVAEEDLIQPTFVIDFPKILSPLAKTHR 491
Query: 121 SKPGLTLRLEL-----------------------FVNKREDQQMGDSEAMVIDGSFCTA 156
P L R EL F+ + +++QMGD EAM +D F A
Sbjct: 492 EDPDLVERFELIIARYEVANAYTELNDPFDQKERFLEQLKEKQMGDEEAMDMDEDFIRA 550
>sp|C4LCP0|SYK_TOLAT Lysine--tRNA ligase OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=lysS PE=3 SV=1
Length = 513
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 98/240 (40%), Gaps = 86/240 (35%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW------------- 47
+++Y+R++PEL LKR + GGF R+ E+ + +RNEG+ + H PE TM
Sbjct: 234 IDMYLRIAPELYLKRLVVGGFERVYEVNRNFRNEGISVRHNPEFTMLEFYMAYADYNDLM 293
Query: 48 ---------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPAN------ 92
+ + G+ KIRY +G E IEIDF PF ++ M+ + + N
Sbjct: 294 DLTEEMLRTLAQNIHGTTKIRYAKDGEEG--IEIDFGQPFARMTMVESILKYGNDVKAEE 351
Query: 93 -------ICMPKIFLLMLL-----------------------PKLSTDH---MSPLAKGH 119
I + K + L+ P T++ +SPLA+ +
Sbjct: 352 LTTLEGAIAVAKRHHVELMKSWELGHVITAIFEETAEHMLHQPTFITEYPAAVSPLARRN 411
Query: 120 RSKPGLTLRLELFV------------NKREDQ-----------QMGDSEAMVIDGSFCTA 156
P +T R E F+ N EDQ + GD EAM D F TA
Sbjct: 412 DDNPEVTDRFEFFIGGREIANGFSELNDAEDQAERFQAQVAQKEAGDDEAMFYDADFVTA 471
>sp|A4SJK0|SYK_AERS4 Lysine--tRNA ligase OS=Aeromonas salmonicida (strain A449) GN=lysS
PE=3 SV=1
Length = 512
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 86/240 (35%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
+++Y+R++PEL LKR + GGF R+ EI + +RNEG+ + H PE TM
Sbjct: 233 IDMYLRIAPELYLKRLVVGGFERVYEINRNFRNEGISVRHNPEFTMIEFYMAYADYIDLM 292
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMER------PAN 92
+ ++ G KIRY G E + IDF PF++L M+ + + PA+
Sbjct: 293 DLTEELLRTLAQDILGDTKIRYAKEGEEG--LTIDFGQPFQRLTMVDSILKFNPDVTPAD 350
Query: 93 IC-------------------------MPKIFL-----LMLLPKLSTDH---MSPLAKGH 119
+ + IF ++L P T++ +SPLA+ +
Sbjct: 351 LATLESAKAVAKHLHIELMKGWELGHVITAIFEETVEHMLLQPTFITEYPAAVSPLARRN 410
Query: 120 RSKPGLTLRLELFV------------NKREDQ-----------QMGDSEAMVIDGSFCTA 156
P +T R E F+ N EDQ + GD EAM D F TA
Sbjct: 411 DVNPDVTDRFEFFIGGRELANGFSELNDAEDQAKRFQDQVNQKEAGDDEAMFYDADFVTA 470
>sp|A6L8C6|SYK_PARD8 Lysine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC 8503
/ DSM 20701 / NCTC 11152) GN=lysS PE=3 SV=1
Length = 576
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 97/231 (41%), Gaps = 75/231 (32%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT-----------MWMV 49
++LY+R++ EL LKR I GGF + EIGK +RNEGMD TH PE T WM+
Sbjct: 231 IDLYLRIATELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMELYVQYKDYNWMM 290
Query: 50 -MELKGSCKIRYHSNGPENEPIE---IDFMPPFRKLDMIAEMERPAN------------- 92
K +I NG I+ I F PFR+L ++ ++
Sbjct: 291 SFTEKLLERICIAVNGTSESTIDGKTISFKAPFRRLPILEAIKEKTGYDLEGKTEDEIRA 350
Query: 93 IC----------------MPKIF-----LLMLLPKLSTDH---MSPLAKGHRSKPGLTLR 128
IC + +IF + P D+ MSPL K HRSKPGLT R
Sbjct: 351 ICKELKMEIDDTMGKGKLIDEIFGEFCEGTFIQPTFIIDYPVEMSPLTKMHRSKPGLTER 410
Query: 129 LELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
EL VN +E DQ + GD EAM ID F A
Sbjct: 411 FELMVNGKELANAYSELNDPIDQEERFKEQLRLSEKGDDEAMFIDQDFLRA 461
>sp|Q64PM9|SYK_BACFR Lysine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) GN=lysS
PE=3 SV=1
Length = 575
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 98/236 (41%), Gaps = 89/236 (37%)
Query: 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT-----------MWMV-- 49
LYMR++ EL LKR I GGF + EIGK +RNEGMD TH PE T WM+
Sbjct: 233 LYMRIASELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMEIYVAYKDYNWMMEF 292
Query: 50 ---------MELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEM------------- 87
+++ G+ +++ N I+F P++++ M+ +
Sbjct: 293 TEKMIEKICLDVNGTTEVKVGDNI-------INFKAPYKRVTMLGAIKEHTGYDLTGMNE 345
Query: 88 ERPANIC----------------MPKIF-----LLMLLPKLSTDH---MSPLAKGHRSKP 123
E+ +C + +IF + P TD+ MSPL K HR P
Sbjct: 346 EQIREVCKKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNP 405
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
LT R EL VN +E DQ + GD EAM+ID F A
Sbjct: 406 ELTERFELMVNGKELCNAYSELNDPIDQLERFEDQMKLSEKGDDEAMIIDKDFVRA 461
>sp|Q5L9E5|SYK_BACFN Lysine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=lysS PE=3 SV=1
Length = 575
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 98/236 (41%), Gaps = 89/236 (37%)
Query: 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT-----------MWMV-- 49
LYMR++ EL LKR I GGF + EIGK +RNEGMD TH PE T WM+
Sbjct: 233 LYMRIASELYLKRLIVGGFEGVYEIGKNFRNEGMDRTHNPEFTCMEIYVAYKDYNWMMEF 292
Query: 50 ---------MELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEM------------- 87
+++ G+ +++ N I+F P++++ M+ +
Sbjct: 293 TEKMIEKICLDVNGTTEVKVGDNI-------INFKAPYKRVTMLGAIKEHTGYDLTGMNE 345
Query: 88 ERPANIC----------------MPKIF-----LLMLLPKLSTDH---MSPLAKGHRSKP 123
E+ +C + +IF + P TD+ MSPL K HR P
Sbjct: 346 EQIREVCKKLNMEIDDTMGKGKLIDEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNP 405
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
LT R EL VN +E DQ + GD EAM+ID F A
Sbjct: 406 ELTERFELMVNGKELCNAYSELNDPIDQLERFEDQMKLSEKGDDEAMIIDKDFVRA 461
>sp|B2J384|SYK_NOSP7 Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=lysS PE=3 SV=1
Length = 561
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 99/240 (41%), Gaps = 91/240 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMV----------- 49
MELY+R++ EL+LKR I GGF ++ E+G+ +RNEG+ H PE T V
Sbjct: 226 MELYLRIATELHLKRLIVGGFEKVFELGRIFRNEGISTRHNPEFTTIEVYQAYADYNDMM 285
Query: 50 -----------MELKGSCKIRYHSNGPENEPIEIDFMPPFRKL---DMIAEM-------- 87
E+ G+ +I Y + EP ID PP+R++ D++ E
Sbjct: 286 ALTEGIITTVAQEVLGTLQITY-----QGEP--IDLTPPWRRVTMHDLVKEFTGLDFNSF 338
Query: 88 -------ERPANICMP------------------KIFLLMLLPKLSTDH---MSPLAKGH 119
N +P K+ ++ P D+ +SPLAK H
Sbjct: 339 QTLEEAKTASKNAGIPGVDEAKSIGKLLNLAFEEKVEANLIQPTFVIDYPVEISPLAKPH 398
Query: 120 RSKPGLTLRLELFVNKRE------------DQQ-----------MGDSEAMVIDGSFCTA 156
RS+PGL R ELF+ RE DQ+ GD EA +D F TA
Sbjct: 399 RSQPGLVERFELFIVGRETGNSFSELTDPIDQRERLEAQAERKAAGDLEAQGVDEDFLTA 458
>sp|Q8R7N1|SYK_THETN Lysine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=lysS PE=3 SV=1
Length = 499
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 91/240 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
+++Y+R++ EL+LKR I GGF ++ EIG+ +RNEGMD+ H PE T+
Sbjct: 226 IDMYLRIALELHLKRLIVGGFEKVYEIGRVFRNEGMDIRHNPEFTLLELYEAYTDYHGMM 285
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
++ ++ GS KI Y EID PP++++ M+ ++ I K+
Sbjct: 286 ELTEQLFAYVAEKVNGSTKIIYQGT-------EIDLTPPWKRITMVDAIKEYVGIDFEKV 338
Query: 99 --------------------------FLLMLLPKLSTDHM-------------SPLAKGH 119
+ ++ +L H+ SPLAK
Sbjct: 339 ATDEEARKIAKDLNLELKKPDMKKGEVIALVFDELVEKHLIQPTFVMDYPVEVSPLAKRK 398
Query: 120 RSKPGLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
R P T R E F+ RE DQ + GD EA ++D F A
Sbjct: 399 RDNPAFTSRFEAFIYGREVANAFSELNDPIDQKERFLEQLRQREAGDEEAHMMDEDFINA 458
>sp|Q8DMA9|SYK_THEEB Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1)
GN=lysS PE=3 SV=1
Length = 506
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 82/198 (41%), Gaps = 68/198 (34%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMV----------- 49
M+LY+R++ EL+LKR I GGF ++ E+G+ +RNEG+ H PE T V
Sbjct: 228 MQLYLRIATELHLKRLIVGGFEKVYELGRIFRNEGISTKHNPEFTSIEVYQAYADYNDMM 287
Query: 50 -----------MELKGSCKIRYHSNGPENEPIEIDFMPPFRK------------------ 80
ME+ G+ KI Y ID PP+R+
Sbjct: 288 TLTEAIITTGAMEVLGTLKITYQGE-------TIDLTPPWRRVTMHDAVLAATGIDFRQL 340
Query: 81 -----------------LDMIAEMERPANICMPKIFLLMLL-PKLSTDH---MSPLAKGH 119
LD + R N +I L+ P D+ +SPLAK H
Sbjct: 341 GDLTAAKIAAQKVGVKDLDTCDTIGRVLNEVFEQIVEPTLIQPTFVLDYPVEISPLAKPH 400
Query: 120 RSKPGLTLRLELFVNKRE 137
RS+PGL R ELF+ RE
Sbjct: 401 RSQPGLVERFELFIVGRE 418
>sp|Q7U3A4|SYK_PROMM Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313)
GN=lysS PE=3 SV=1
Length = 508
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 91/238 (38%)
Query: 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMV------------- 49
LY+R++ EL+LKR + GGF R+ E+G+ +RNEGM H PE T V
Sbjct: 235 LYLRIATELHLKRLVVGGFERVYELGRIFRNEGMSTRHNPEFTSVEVYQAYADYIDMMVL 294
Query: 50 ---------MELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------- 93
++ GS +I Y IEID PP+R+ M ++ +
Sbjct: 295 TEQLISSVCTQICGSTRITYQG-------IEIDLTPPWRRASMHELVQEATGLDFMGFKD 347
Query: 94 ------CMPKIFL-----------------------LMLLPKLSTDH---MSPLAKGHRS 121
M ++ L ++ P D+ +SPLA+ HRS
Sbjct: 348 LAVAASAMARVGLEVPSKADSVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISPLARQHRS 407
Query: 122 KPGLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
KPGL R ELF+ RE DQ Q GD EA +D F A
Sbjct: 408 KPGLVERFELFIVGRETANAFSELIDPLDQRQRLEAQQARRQAGDLEAHGVDEDFLQA 465
>sp|A9BD62|SYK_PROM4 Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9211)
GN=lysS PE=3 SV=1
Length = 503
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 94/241 (39%), Gaps = 92/241 (38%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
+ LY+R++ EL+LKR + GGF R+ E+G+ +RNEG+ H PE T
Sbjct: 226 LSLYLRIATELHLKRLVVGGFERVYELGRIFRNEGISTRHNPEFTTVEIYQAFADYTDMM 285
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDM--------------I 84
++ ++ GS I+Y E+D PP+R++ M
Sbjct: 286 DLTEEMISFVCSQICGSTTIQYQGK-------EVDLTPPWRRITMHELVLESTGLDFYEF 338
Query: 85 AEMERPANICMPKIFLL-----------------------MLLPKLSTDH---MSPLAKG 118
+ A+ M + L + P D+ +SPLA+
Sbjct: 339 GQDISKASTAMQSVGLNVPDHADSVGRLMNEAFEQAVEGDLFQPTFVMDYPIEISPLARK 398
Query: 119 HRSKPGLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCT 155
HRSKPG+ R ELF+ RE DQ Q GD EA VID F
Sbjct: 399 HRSKPGIVERFELFIAGRETANAFSELIDPVDQKERLLLQQSRRQAGDLEAHVIDEDFVN 458
Query: 156 A 156
A
Sbjct: 459 A 459
>sp|Q9X231|SYK_THEMA Lysine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=lysS PE=3 SV=1
Length = 502
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 87/236 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPE----------------- 43
+++Y+R++PEL LKR I GGF ++ EIGK +RNEG+ H PE
Sbjct: 219 IDMYLRIAPELYLKRLIVGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMM 278
Query: 44 -LTMWMVMELK----GSCKIRYHSNGPENEPIEIDFMPPFRKL---DMIAE------MER 89
LT +++E+ G+ KI Y EIDF PP++++ D + E +E
Sbjct: 279 DLTEELIVEVVKRTCGTLKISYQGK-------EIDFTPPWKRVRMRDFLKEKLGVDILED 331
Query: 90 PANICMPKI-------------FLL----------MLLPKLSTDH---MSPLAKGHRSKP 123
P + + K+ L+ ++ P DH +SPLAK HR P
Sbjct: 332 PDEVLLKKLEEHGVELEIKNRAHLIDKLRDLVEEELVNPTFIIDHPVVISPLAKRHREDP 391
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
LT R EL + RE DQ + GD EA ++D F A
Sbjct: 392 RLTERFELIIFGREIANAFSELNDPVDQYQRFLEQAKMREEGDEEAHMMDLDFVRA 447
>sp|A2C629|SYK_PROM3 Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303)
GN=lysS PE=3 SV=1
Length = 508
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 96/238 (40%), Gaps = 91/238 (38%)
Query: 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMV------------- 49
LY+R++ EL+LKR + GGF R+ E+G+ +RNEGM H PE T V
Sbjct: 235 LYLRIATELHLKRLVVGGFERVYELGRIFRNEGMSTRHNPEFTSVEVYQAYADYIDMMVL 294
Query: 50 ---------MELKGSCKIRYHSNGPENEPIEIDFMPPFRK------------LDMIAEME 88
++ GS +I Y IEID PP+R+ LD + +
Sbjct: 295 TEQLISSVCTQICGSTRITYQG-------IEIDLTPPWRRASMHELVQEATGLDFMGFAD 347
Query: 89 R--------PANICMPK----------------IFLLMLLPKLSTDH---MSPLAKGHRS 121
R A + +P + + ++ P D+ +SPLA+ HRS
Sbjct: 348 RAVAASAMARAGLEVPSKADSVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISPLARQHRS 407
Query: 122 KPGLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
KPGL R ELF+ RE DQ Q GD EA +D F A
Sbjct: 408 KPGLVERFELFIVGRETANAFSELIDPLDQRQRLEAQQARRQAGDLEAHGVDEDFLQA 465
>sp|Q7U9X5|SYK_SYNPX Lysine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=lysS
PE=3 SV=1
Length = 502
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 96/240 (40%), Gaps = 91/240 (37%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLP------------------ 42
+ L +R++ EL+LKR + GGF R+ E+G+ +RNEG+ H P
Sbjct: 220 LPLTLRIATELHLKRLVVGGFERVYELGRIFRNEGVSTRHNPEFTSVEIYQAYSDYIGMM 279
Query: 43 ELTMWMV----MELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEME---------- 88
ELT MV E+ GSC+I Y EID PP+R+ M +E
Sbjct: 280 ELTEQMVSAVCQEVCGSCQITYQDT-------EIDLSPPWRRATMHELVEEATGLDFNSF 332
Query: 89 ---RPANICMP-----------------------KIFLLMLLPKLSTDH---MSPLAKGH 119
A + M + ++ P TD+ +SPLA+ H
Sbjct: 333 SSREAAAVAMTGKGLHAPELADSVGRLLNEAFEQAVETTLIQPTFVTDYPVEISPLARPH 392
Query: 120 RSKPGLTLRLELFVNKRE------------DQQM-----------GDSEAMVIDGSFCTA 156
RSKPGL R ELF+ RE DQ+ GD EA +D F TA
Sbjct: 393 RSKPGLVERFELFIVGREHANAFSELTDPVDQRQRLEAQQARKAAGDLEAQGLDEDFVTA 452
>sp|Q1H372|SYK_METFK Lysine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=lysS PE=3 SV=1
Length = 509
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 94/235 (40%), Gaps = 81/235 (34%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMV 49
+++YMR++PEL LKR + GGF R+ EI + +RNEG+ + H PE TM W+
Sbjct: 236 LQMYMRIAPELYLKRLVVGGFERVFEINRNFRNEGLSVRHNPEFTMMEFYAAYTDYKWL- 294
Query: 50 MELKGSCKIRYH------SNGPENEPIEIDFMPPFRKLDMIAEMERPA-----NICMPKI 98
M+ SC IR S E + E+D PF +L +I +++ A +
Sbjct: 295 MDFTESC-IRAAAIAACGSAVVEYQGRELDLGKPFERLTIIGAIQKYAPQYTLEQLSDQA 353
Query: 99 FLLMLLPKLSTD----------------------------------HMSPLAKGHRSKPG 124
FL L K + +SPLA+ S P
Sbjct: 354 FLRQELKKFGVEALPHLGLGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDSDPS 413
Query: 125 LTLRLELFV------------NKREDQ-----------QMGDSEAMVIDGSFCTA 156
+T R ELF+ N EDQ + GD EAM DG F A
Sbjct: 414 ITERYELFITGREIANGFSELNDAEDQAARFHAQVAAKEAGDDEAMYYDGDFIRA 468
>sp|A5I7P4|SYK_CLOBH Lysine--tRNA ligase OS=Clostridium botulinum (strain Hall / ATCC
3502 / NCTC 13319 / Type A) GN=lysS PE=3 SV=1
Length = 504
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 95/242 (39%), Gaps = 93/242 (38%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
+++Y+R++ EL LKR I GGF ++ EIG+ +RNEGMD+ H PE T+
Sbjct: 226 IDMYLRIATELYLKRLIVGGFEKVYEIGRNFRNEGMDIRHNPEFTVIELYEAYADYNDMM 285
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI----- 93
++ ++ G+ K++Y E EIDF PP+R+L M+ + A +
Sbjct: 286 EITENMIAYICEKVLGTTKVQY-------EGTEIDFTPPWRRLTMVDAVREYAGVDFNTI 338
Query: 94 -----------------------CMPKIFLLMLLPKLSTDHM-------------SPLAK 117
C L+ L + D + SPL K
Sbjct: 339 KDDIEARTIAKEKHIEFKKELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTK 398
Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
R T R E FV RE ++++GD EA ++D F
Sbjct: 399 KKRGNEAFTERFEGFVFGREVCNAYSELNDSIVQKERFMQQLKERELGDDEAYMMDDDFI 458
Query: 155 TA 156
T+
Sbjct: 459 TS 460
>sp|A7FZA5|SYK_CLOB1 Lysine--tRNA ligase OS=Clostridium botulinum (strain ATCC 19397 /
Type A) GN=lysS PE=3 SV=1
Length = 504
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 95/242 (39%), Gaps = 93/242 (38%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
+++Y+R++ EL LKR I GGF ++ EIG+ +RNEGMD+ H PE T+
Sbjct: 226 IDMYLRIATELYLKRLIVGGFEKVYEIGRNFRNEGMDIRHNPEFTVIELYEAYADYNDMM 285
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI----- 93
++ ++ G+ K++Y E EIDF PP+R+L M+ + A +
Sbjct: 286 EITENMIAYICEKVLGTTKVQY-------EGTEIDFTPPWRRLTMVDAVREYAGVDFNTI 338
Query: 94 -----------------------CMPKIFLLMLLPKLSTDHM-------------SPLAK 117
C L+ L + D + SPL K
Sbjct: 339 KDDIEARTIAKEKHIEFKKELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTK 398
Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
R T R E FV RE ++++GD EA ++D F
Sbjct: 399 KKRGNEAFTERFEGFVFGREVCNAYSELNDSIVQKERFMQQLKERELGDDEAYMMDDDFI 458
Query: 155 TA 156
T+
Sbjct: 459 TS 460
>sp|P95970|SYK_SULSO Lysine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=lysS PE=3 SV=1
Length = 494
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 76/231 (32%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----WMVME------ 51
+ Y+R++ EL LKR I GGF ++ EIGK +RNE +D+TH PE T+ W +
Sbjct: 218 DWYLRIALELYLKRYIIGGFNKVFEIGKVFRNEDIDVTHNPEFTLLELYWAYADYNDIMN 277
Query: 52 -----LKGSCKIRYHSNGPENEPIEIDFMPPFRKLDM-------------------IAEM 87
LK K +S EIDF PF+++ M + E+
Sbjct: 278 LTEDLLKSVVKKVTNSTKIVYGKYEIDFEGPFKRISMYDSLSEILGKDVESMSDNELKEL 337
Query: 88 ERPANIC-----------MPKIFLLMLLPKLS-----TDH---MSPLAKGHRSKPGLTLR 128
+ N+ + K+F ++ P L+ TD+ +PL K HR+KPGL R
Sbjct: 338 MKKYNLTPRGNQYVRGLMIEKLFDKLVTPTLTNPTFITDYPIETTPLCKPHRNKPGLVER 397
Query: 129 LELFVNK--------------------REDQQM---GDSEAMVIDGSFCTA 156
E+F+ RE+Q+M GD EA D F A
Sbjct: 398 FEMFIAGMEVANAYTELNDPILQDKLFREEQEMFRRGDEEAHPYDKDFVRA 448
>sp|A5ILE6|SYK_THEP1 Lysine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=lysS PE=3 SV=1
Length = 502
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 87/236 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPE----------------- 43
+++Y+R++PEL LKR I GGF ++ EIGK +RNEG+ H PE
Sbjct: 219 IDMYLRIAPELYLKRLIIGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMM 278
Query: 44 -LTMWMVMELK----GSCKIRYHSNGPENEPIEIDFMPPFRKL---DMIAE------MER 89
LT +++E+ G+ KI Y EIDF PP++++ D + E +E
Sbjct: 279 DLTEELIVEVVKRTCGTLKISYQGK-------EIDFTPPWKRVRMRDFLKEKLGVDILED 331
Query: 90 PANICMPKI-------------FLL----------MLLPKLSTDH---MSPLAKGHRSKP 123
P + + K+ L+ ++ P DH +SPLAK HR P
Sbjct: 332 PDEVLLKKLEEYGVELEIKNRAHLIDKLRDLVEEELVNPTFIIDHPVVISPLAKRHREDP 391
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
LT R EL + RE DQ + GD EA ++D F A
Sbjct: 392 RLTERFELIIFGREIANAFSELNDPVDQYQRFLEQAKMREEGDEEAHMMDLDFVRA 447
>sp|B1LAX6|SYK_THESQ Lysine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=lysS PE=3
SV=1
Length = 502
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 87/236 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPE----------------- 43
+++Y+R++PEL LKR I GGF ++ EIGK +RNEG+ H PE
Sbjct: 219 IDMYLRIAPELYLKRLIIGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMM 278
Query: 44 -LTMWMVMELK----GSCKIRYHSNGPENEPIEIDFMPPFRKL---DMIAE------MER 89
LT +++E+ G+ KI Y EIDF PP++++ D + E +E
Sbjct: 279 DLTEELIVEVVKRTCGTLKISYQGK-------EIDFTPPWKRVRMRDFLKEKLGVDILED 331
Query: 90 PANICMPKI-------------FLL----------MLLPKLSTDH---MSPLAKGHRSKP 123
P + + K+ L+ ++ P DH +SPLAK HR P
Sbjct: 332 PDEVLLKKLEEYGVELEIKNRAHLIDKLRDLVEEELVNPTFIIDHPVVISPLAKRHREDP 391
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
LT R EL + RE DQ + GD EA ++D F A
Sbjct: 392 RLTERFELIIFGREIANAFSELNDPVDQYQRFLEQAKMREEGDEEAHMMDLDFVRA 447
>sp|A7GJB3|SYK_CLOBL Lysine--tRNA ligase OS=Clostridium botulinum (strain Langeland /
NCTC 10281 / Type F) GN=lysS PE=3 SV=1
Length = 504
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 79/235 (33%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGS----- 55
+++Y+R++ EL LKR I GGF ++ EIGK +RNEG+D+ H PE T + E
Sbjct: 226 IDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDIRHNPEFTAIELYEAYADYNDMM 285
Query: 56 ----------CKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------------ 93
C+ + E E EIDF PP+R+L M+ ++ A +
Sbjct: 286 EITENMIAYICEKVLGTTKVEYEGAEIDFTPPWRRLTMVDAVKEYAGVDFNIIKNDIEAR 345
Query: 94 ----------------CMPKIFLLMLLPKLSTDHM-------------SPLAKGHRSKPG 124
C L+ L + D + SPL K R
Sbjct: 346 TIAKEKHIEFKKELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEA 405
Query: 125 LTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTA 156
T R E FV RE ++++GD EA ++D F T+
Sbjct: 406 FTERFEGFVFGREVCNAYSELNDSIVQKERFMQQLKERELGDDEAYMMDDDFITS 460
>sp|B1IGJ2|SYK_CLOBK Lysine--tRNA ligase OS=Clostridium botulinum (strain Okra / Type
B1) GN=lysS PE=3 SV=1
Length = 504
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 79/235 (33%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGS----- 55
+++Y+R++ EL LKR I GGF ++ EIGK +RNEG+D+ H PE T + E
Sbjct: 226 IDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDIRHNPEFTAIELYEAYADYNDMM 285
Query: 56 ----------CKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------------ 93
C+ + E E EIDF PP+R+L M+ ++ A +
Sbjct: 286 EITENMIAYICEKVLGTTKVEYEGAEIDFTPPWRRLTMVDAVKEYAGVDFNIIKNDIEAR 345
Query: 94 ----------------CMPKIFLLMLLPKLSTDHM-------------SPLAKGHRSKPG 124
C L+ L + D + SPL K R
Sbjct: 346 TIAKEKHIEFKKELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEA 405
Query: 125 LTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTA 156
T R E FV RE ++++GD EA ++D F T+
Sbjct: 406 FTERFEGFVFGREVCNAYSELNDSIVQKERFMQQLKERELGDDEAYMMDDDFITS 460
>sp|B1KTC1|SYK_CLOBM Lysine--tRNA ligase OS=Clostridium botulinum (strain Loch Maree /
Type A3) GN=lysS PE=3 SV=1
Length = 504
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 79/235 (33%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVMELKGS----- 55
+++Y+R++ EL LKR I GGF ++ EIGK +RNEG+D+ H PE T + E
Sbjct: 226 IDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDIRHNPEFTAIELYEAYADYNDMM 285
Query: 56 ----------CKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------------ 93
C+ + E E EIDF PP+R+L M+ ++ A +
Sbjct: 286 EITENMIAYICEKVLGTTKVEYEGAEIDFTPPWRRLTMVDAVKEYAGVDFNIIKDDIEAR 345
Query: 94 ----------------CMPKIFLLMLLPKLSTDHM-------------SPLAKGHRSKPG 124
C L+ L + D + SPL K R
Sbjct: 346 AIAKEKHIEFKKELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKKRGNEA 405
Query: 125 LTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTA 156
T R E FV RE ++++GD EA ++D F T+
Sbjct: 406 FTERFEGFVFGREVCNAYSELNDSIVQKERFMQQLKERELGDDEAYMMDDDFITS 460
>sp|A7HM68|SYK_FERNB Lysine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602
/ DSM 5306 / Rt17-B1) GN=lysS PE=3 SV=1
Length = 509
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 98/236 (41%), Gaps = 87/236 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------- 45
+++Y+R++ EL+LKR I GGF ++ EIGK +RNEG+ H PE T
Sbjct: 216 IDMYLRIATELHLKRFIVGGFDKVYEIGKIFRNEGISYKHHPEFTSIELYQAYADYEDMM 275
Query: 46 -------MWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDM--------------- 83
++V +L G+ KI Y EIDF P+R++ M
Sbjct: 276 NLTEELITYLVEQLYGTTKITYQGQ-------EIDFTRPWRRVKMRDFIKENLGVDIIED 328
Query: 84 --------IAEMERPANI-----CMPKIFLL----MLLPKLSTDH---MSPLAKGHRSKP 123
+AE +I + K++ L ++ P +H +SPLAK HR P
Sbjct: 329 SDETMAKVLAENGVEVDINDRGHMIEKLWDLVEDKVIQPTFLLEHPVEISPLAKKHREDP 388
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
+T R EL + RE DQ +GD EA ++D F A
Sbjct: 389 RVTERFELIIYGREMANAFSELNDPVDQLERFMNQLRLRDLGDQEAQMLDKDFVRA 444
>sp|A6LMS4|SYK_THEM4 Lysine--tRNA ligase OS=Thermosipho melanesiensis (strain BI429 /
DSM 12029) GN=lysS PE=3 SV=1
Length = 502
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 87/236 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------- 45
+E+YMR++ EL LKR I GGF ++ E+GK +RNEG+ H PE T
Sbjct: 219 IEMYMRIATELYLKRFIVGGFEKVYELGKNFRNEGLSYKHHPEFTSIEIYQAYADYEDMM 278
Query: 46 -------MWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKL---DMIAE--------- 86
+++V +L G+ KI+Y + +E+DF P+R++ D I E
Sbjct: 279 NLTEELFVYIVEKLFGTTKIKYQN-------VELDFSRPWRRIKMRDFIKEHLGVDILED 331
Query: 87 -MERPANIC---------------MPKIFLL----MLLPKLSTDH---MSPLAKGHRSKP 123
M R ++ + K++ L ++ P +H +SPLAK HR P
Sbjct: 332 SMGRMMDVLEEHGVEVEIRDKGHMIEKLWDLVEDKVVQPTFLLEHPVEISPLAKKHREDP 391
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
+T R EL + RE DQ + GD EA ++D F A
Sbjct: 392 RVTERFELIIYGREMANAFSELNDPVDQYERFLKQVELREAGDEEAQMMDRDFVRA 447
>sp|Q9RXE1|SYK_DEIRA Lysine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=lysS PE=3 SV=1
Length = 525
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 85/184 (46%), Gaps = 53/184 (28%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----WMVME------ 51
+ +R+S EL LKR + GGF R+ EIG+ YRNEG+D TH PE TM W +
Sbjct: 238 DFKLRISLELYLKRLLVGGFERVYEIGRVYRNEGIDRTHNPEFTMLELYWAYADYSDIAK 297
Query: 52 -----LKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIA--------------EMER--- 89
L G K + S E + +DF PPF ++D + +++R
Sbjct: 298 LVEDLLSGLAKEVHGSYQFEYQGKTLDFTPPFARVDYLGGLREHVPGLDFDPLDLDRLRA 357
Query: 90 ------------PANICMPKIFLLMLLPKLST-----DH---MSPLAKGHRSKP-GLTLR 128
P+ + K+F + P LS DH +SPLAK HRS+P +T R
Sbjct: 358 FCDERFPQWKGVPSYKLLDKLFGEFVEPLLSNPTFVMDHPAVISPLAKKHRSRPEAVTER 417
Query: 129 LELF 132
E+F
Sbjct: 418 FEVF 421
>sp|B2RJY1|SYK_PORG3 Lysine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC 33277
/ DSM 20709 / JCM 12257) GN=lysS PE=3 SV=1
Length = 578
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 91/236 (38%), Gaps = 89/236 (37%)
Query: 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMV-- 49
LY+R++ EL LKR I GGF + E + +RNEGMD TH PE T WM+
Sbjct: 235 LYLRIANELYLKRLIVGGFDGVYEFSRNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMNF 294
Query: 50 ---------MELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI---CMPK 97
M++ G+ +++ IDF P+R++ MI + I M +
Sbjct: 295 TEQMLERICMDVLGTTQVKVGEK-------LIDFKAPYRRVTMIEAIHEHTGIDISGMNE 347
Query: 98 IFLLMLLPKLSTDH----------------------------------MSPLAKGHRSKP 123
L + KL +H MSPL K HR+ P
Sbjct: 348 AELRQVCDKLGVEHNETMGKGKLIDEIFGEKCEKNYIQPTFITDYPKEMSPLTKEHRTNP 407
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
LT R EL VN +E DQ + GD EAM ID F A
Sbjct: 408 ELTERFELMVNGKELANAYSELNDPIDQRERFEEQLKLSEKGDDEAMYIDNDFIRA 463
>sp|Q1LPK6|SYK_RALME Lysine--tRNA ligase OS=Ralstonia metallidurans (strain CH34 / ATCC
43123 / DSM 2839) GN=lysS PE=3 SV=1
Length = 515
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 95/245 (38%), Gaps = 96/245 (39%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM- 48
M+++MR++PEL LKR I GGF R+ EI + +RNEG+ H PE TM W+
Sbjct: 237 MQMFMRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLM 296
Query: 49 ----------VMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPA------- 91
++ +GS + Y E+D PF +L + +++ A
Sbjct: 297 DFTENLIRQAAIDARGSATVTYQGR-------ELDLSKPFHRLTICGAIQKYAPEYTDAQ 349
Query: 92 -----------------NICMPKIF------LLMLL-----------PKLSTDH---MSP 114
N P+ L ++L P D+ +SP
Sbjct: 350 LADADFLRAELKNKFKINTSAPQFLNAGLGTLQLVLFEETAEAQLWEPTYIVDYPVEVSP 409
Query: 115 LAKGHRSKPGLTLRLELFVNKR------------EDQ-----------QMGDSEAMVIDG 151
LA+G ++PG+T R ELF+ R EDQ GD EAM D
Sbjct: 410 LARGSDTQPGITERFELFITGREIANGFSELNDPEDQAERFRKQVEQKDAGDEEAMYFDA 469
Query: 152 SFCTA 156
+ A
Sbjct: 470 DYIRA 474
>sp|B7ID87|SYK_THEAB Lysine--tRNA ligase OS=Thermosipho africanus (strain TCF52B)
GN=lysS PE=3 SV=1
Length = 502
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 87/236 (36%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELT--------------- 45
+++YMR++ EL LKR I GGF ++ E+GK +RNEG+ H PE T
Sbjct: 219 IDMYMRIATELYLKRFIVGGFEKVYELGKNFRNEGLSYKHHPEFTSIEIYQAYADYEDMM 278
Query: 46 -------MWMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRK------------LDMIAE 86
+++V +L G+ K++Y IEIDF P+R+ +D++ +
Sbjct: 279 NLTEELFVFIVEKLFGTTKVKYQD-------IEIDFSRPWRRVKMRDFIKEHLGVDILED 331
Query: 87 ME----------------RPANICMPKIFLL----MLLPKLSTDH---MSPLAKGHRSKP 123
E + + K++ L ++ P +H +SPLAK HR P
Sbjct: 332 TEEKMLEVLKQHDVEVEIKDKGHLIEKLWDLVEDKVVQPTFLLEHPVEISPLAKKHREDP 391
Query: 124 GLTLRLELFVNKRE------------DQ-----------QMGDSEAMVIDGSFCTA 156
+T R EL + RE DQ + GD EA ++D F A
Sbjct: 392 RVTERFELIIYGREMANAFSELNDPVDQYERFLRQAKLREAGDEEAQMMDKDFVRA 447
>sp|A0PXN4|SYK_CLONN Lysine--tRNA ligase OS=Clostridium novyi (strain NT) GN=lysS PE=3
SV=1
Length = 510
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 93/242 (38%), Gaps = 93/242 (38%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMWMVME--------- 51
+++Y+R++ EL LKR I GGF ++ EIGK +RNEG+D+ H PE T + E
Sbjct: 235 IDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDVRHNPEFTAIELYEAYADYNDMM 294
Query: 52 -------------LKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI----- 93
+ G+ K+ Y E EIDF PP+R++ M+ ++ A +
Sbjct: 295 EITENMVAYVCEKVNGTTKVMY-------EGTEIDFKPPWRRITMVDAVKEYAGVDFNEV 347
Query: 94 -----------------------CMPKIFLLMLLPKLSTDHM-------------SPLAK 117
C L+ L + + + SPL K
Sbjct: 348 KTDEEAREIAKSKELELKKELKDCTKGDILVALFEEFGEEKLMQPTFVCDYPKENSPLTK 407
Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
R LT R E FV RE ++++GD EA ++D F
Sbjct: 408 KKRGNDELTERFEGFVYGREICNAYSELNDPIVQKERFMQQLKERELGDDEAYMMDDDFI 467
Query: 155 TA 156
A
Sbjct: 468 NA 469
>sp|Q899G7|SYK_CLOTE Lysine--tRNA ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=lysS PE=3 SV=1
Length = 502
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 93/242 (38%)
Query: 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-------------- 46
+++Y+R++ EL LKR I GGF ++ EIGK +RNEG+D+ H PE TM
Sbjct: 226 IDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDIRHNPEFTMIELYEAYADYNDMM 285
Query: 47 --------WMVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPKI 98
++ ++ G+ K++Y E EI+F PP++++ M+ ++ + + +I
Sbjct: 286 EITENMVAYIAEKVCGNTKVKY-------EETEIEFRPPWKRITMVDSVKEYSGVDFNEI 338
Query: 99 --------------FLL------------------------MLLPKLSTDH---MSPLAK 117
F L ++ P D+ +SPL+K
Sbjct: 339 KTDEEARELVKGKDFELKKKLEDCTKADILNLFFEEYVEKNLIQPTFVCDYPVEISPLSK 398
Query: 118 GHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFC 154
P T R E FV RE ++++GD EA ++D F
Sbjct: 399 KKNDNPEYTERFEGFVYGRELCNAYTELNDPIVQKERFIQQLKERELGDDEAFMMDEDFI 458
Query: 155 TA 156
A
Sbjct: 459 NA 460
>sp|A8F4K1|SYK_THELT Lysine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301 /
DSM 14385 / TMO) GN=lysS PE=3 SV=1
Length = 498
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 95/235 (40%), Gaps = 87/235 (37%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTMW-------------- 47
E+Y+R++PEL+LKR I GGF ++ EIGK +RNEG+ H PE T
Sbjct: 220 EMYLRIAPELHLKRYIVGGFEKVYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMME 279
Query: 48 --------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICM---- 95
+V+ L GS K+ Y +E+DF PP++++ M ++ ++ +
Sbjct: 280 LTESLISELVLHLYGSYKLTYQG-------VELDFKPPWKRIKMREFIKSRLDVDILEDN 332
Query: 96 -PKIFLLM---------------------------LLPKLSTDH---MSPLAKGHRSKPG 124
K++ ++ + P DH +SPLAK HR P
Sbjct: 333 DEKLYYVLKERGVEPDTKSREKMIEKLWDLVEEEVIQPTFLMDHPVDISPLAKRHRDDPR 392
Query: 125 LTLRLELFV------------NKREDQ-----------QMGDSEAMVIDGSFCTA 156
LT R E + N +DQ GD EA +D F A
Sbjct: 393 LTERFEPIIFGMEMGNAFSELNDPDDQLERFKAQLKLRDAGDEEAHRMDLDFIRA 447
>sp|P41255|SYK_THETH Lysine--tRNA ligase OS=Thermus thermophilus GN=lysS PE=1 SV=1
Length = 492
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 65/194 (33%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----W---------- 47
E Y+R+S EL LKR + GG+ ++ EIG+ +RNEG+D H PE TM W
Sbjct: 216 EFYLRISLELYLKRLLVGGYEKVFEIGRNFRNEGIDHNHNPEFTMLEAYWAYADYQDMAG 275
Query: 48 --------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------ 93
+V+ L GS ++ Y ++F PPFR++ + ++ A +
Sbjct: 276 LVEELLSGLVLHLFGSHEVPYQGR-------VLNFKPPFRRISFVEALKEKAGLPFDPLD 328
Query: 94 ----------------------CMPKIFLLMLLPKLSTD--------HMSPLAKGHRSKP 123
+ K+F + + P+L +SPLAK HR KP
Sbjct: 329 LERLRLWADAHHPELSQVPNYKLLDKLFGIYVEPELQDPTFVFDFPLAISPLAKRHREKP 388
Query: 124 GLTLRLELFVNKRE 137
GL R +L+ E
Sbjct: 389 GLVERWDLYAGGME 402
>sp|Q5SJG7|SYK_THET8 Lysine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=lysS PE=3 SV=1
Length = 492
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 65/194 (33%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----W---------- 47
E Y+R+S EL LKR + GG+ ++ EIG+ +RNEG+D H PE TM W
Sbjct: 216 EFYLRISLELYLKRLLVGGYEKVFEIGRNFRNEGIDHNHNPEFTMLEAYWAYADYQDMAG 275
Query: 48 --------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------ 93
+V+ L GS ++ Y ++F PPFR++ + ++ A +
Sbjct: 276 LVEELLSGLVLHLFGSHEVPYQGR-------VLNFKPPFRRISFVEALKEKAGLPFDPLD 328
Query: 94 ----------------------CMPKIFLLMLLPKLSTD--------HMSPLAKGHRSKP 123
+ K+F + + P+L +SPLAK HR KP
Sbjct: 329 LERLRLWADAHHPELSQVPNYKLLDKLFGIYVEPELQDPTFVFDFPLAISPLAKRHREKP 388
Query: 124 GLTLRLELFVNKRE 137
GL R +L+ E
Sbjct: 389 GLVERWDLYAGGME 402
>sp|Q72JT9|SYK_THET2 Lysine--tRNA ligase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=lysS PE=3 SV=1
Length = 492
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 65/194 (33%)
Query: 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----W---------- 47
E Y+R+S EL LKR + GG+ ++ EIG+ +RNEG+D H PE TM W
Sbjct: 216 EFYLRISLELYLKRLLVGGYEKVFEIGRNFRNEGIDHNHNPEFTMLEAYWAYADYQDMAG 275
Query: 48 --------MVMELKGSCKIRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANI------ 93
+V+ L GS ++ Y ++F PPFR++ + ++ A +
Sbjct: 276 LVEELLSGLVLHLFGSHEVPYQGR-------VLNFKPPFRRISFVEALKEKAGLPFDPLD 328
Query: 94 ----------------------CMPKIFLLMLLPKLSTD--------HMSPLAKGHRSKP 123
+ K+F + + P+L +SPLAK HR KP
Sbjct: 329 LERLRLWADAHHPELSQVPNYKLLDKLFGIYVEPELQDPTFVFDFPLAISPLAKRHREKP 388
Query: 124 GLTLRLELFVNKRE 137
GL R +L+ E
Sbjct: 389 GLVERWDLYAGGME 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,920,457
Number of Sequences: 539616
Number of extensions: 3026783
Number of successful extensions: 9115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7804
Number of HSP's gapped (non-prelim): 1202
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)