Query 048360
Match_columns 199
No_of_seqs 174 out of 1239
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1190 LysU Lysyl-tRNA synthe 100.0 1.2E-55 2.5E-60 397.9 10.9 190 1-190 228-497 (502)
2 TIGR00499 lysS_bact lysyl-tRNA 100.0 3.6E-54 7.7E-59 395.9 16.6 188 1-188 220-489 (496)
3 PRK12445 lysyl-tRNA synthetase 100.0 4.1E-54 8.9E-59 395.9 13.1 188 1-188 232-498 (505)
4 TIGR00462 genX lysyl-tRNA synt 100.0 4E-53 8.6E-58 368.5 16.2 175 2-188 54-304 (304)
5 PLN02502 lysyl-tRNA synthetase 100.0 2.8E-53 6E-58 393.1 14.0 189 1-189 277-547 (553)
6 PRK00484 lysS lysyl-tRNA synth 100.0 5E-53 1.1E-57 388.1 11.8 189 1-189 220-485 (491)
7 KOG1885 Lysyl-tRNA synthetase 100.0 5.9E-54 1.3E-58 381.7 5.1 190 1-190 273-553 (560)
8 PTZ00417 lysine-tRNA ligase; P 100.0 1.4E-52 3E-57 390.0 13.0 188 1-188 301-578 (585)
9 PTZ00385 lysyl-tRNA synthetase 100.0 4.7E-52 1E-56 388.6 16.0 188 1-188 281-559 (659)
10 cd00775 LysRS_core Lys_tRNA sy 100.0 1.2E-51 2.6E-56 362.6 14.8 187 2-188 57-324 (329)
11 PRK02983 lysS lysyl-tRNA synth 100.0 4.8E-50 1E-54 394.7 13.7 187 1-188 818-1087(1094)
12 TIGR00458 aspS_arch aspartyl-t 100.0 8.9E-50 1.9E-54 361.5 14.1 191 2-194 180-427 (428)
13 PRK06462 asparagine synthetase 100.0 9.6E-49 2.1E-53 345.0 15.1 189 1-192 83-332 (335)
14 PRK05159 aspC aspartyl-tRNA sy 100.0 1.3E-48 2.8E-53 354.7 14.2 191 1-194 182-436 (437)
15 cd00776 AsxRS_core Asx tRNA sy 100.0 2.9E-48 6.2E-53 340.3 12.0 184 1-187 70-316 (322)
16 PLN02532 asparagine-tRNA synth 100.0 5.1E-48 1.1E-52 360.2 14.2 192 1-195 370-633 (633)
17 COG0017 AsnS Aspartyl/asparagi 100.0 4.9E-48 1.1E-52 346.0 12.8 189 2-193 181-433 (435)
18 PLN02850 aspartate-tRNA ligase 100.0 1.2E-47 2.6E-52 354.7 13.1 191 2-194 272-529 (530)
19 PRK09350 poxB regulator PoxA; 100.0 5.1E-47 1.1E-51 330.4 15.7 170 2-185 59-306 (306)
20 PF00152 tRNA-synt_2: tRNA syn 100.0 5.4E-48 1.2E-52 339.5 6.0 182 2-188 74-330 (335)
21 PLN02221 asparaginyl-tRNA synt 100.0 6.9E-47 1.5E-51 350.9 12.4 190 1-193 307-570 (572)
22 cd00669 Asp_Lys_Asn_RS_core As 100.0 2.8E-46 6.1E-51 320.5 14.1 174 2-187 50-263 (269)
23 PTZ00401 aspartyl-tRNA synthet 100.0 3.7E-46 7.9E-51 345.5 15.3 191 1-193 259-548 (550)
24 TIGR00457 asnS asparaginyl-tRN 100.0 3E-46 6.6E-51 340.4 12.7 191 2-195 192-453 (453)
25 PTZ00425 asparagine-tRNA ligas 100.0 5.5E-46 1.2E-50 344.8 14.5 191 2-195 325-586 (586)
26 PRK03932 asnC asparaginyl-tRNA 100.0 3.8E-46 8.2E-51 339.6 11.9 190 2-195 189-450 (450)
27 KOG0556 Aspartyl-tRNA syntheta 100.0 1.8E-46 3.9E-51 329.7 8.5 191 1-193 274-531 (533)
28 PLN02603 asparaginyl-tRNA synt 100.0 3.6E-45 7.9E-50 339.3 12.0 191 2-195 303-565 (565)
29 COG2269 Truncated, possibly in 100.0 4.5E-44 9.6E-49 303.2 7.6 175 1-190 69-319 (322)
30 cd00777 AspRS_core Asp tRNA sy 100.0 5.9E-42 1.3E-46 295.3 13.1 179 3-188 51-275 (280)
31 TIGR00459 aspS_bact aspartyl-t 100.0 3.1E-42 6.7E-47 320.7 11.6 183 3-192 187-556 (583)
32 KOG0554 Asparaginyl-tRNA synth 100.0 2.1E-40 4.6E-45 290.6 10.1 185 2-189 187-438 (446)
33 PLN02903 aminoacyl-tRNA ligase 100.0 1.5E-35 3.4E-40 277.6 11.5 82 3-90 254-346 (652)
34 PRK00476 aspS aspartyl-tRNA sy 100.0 3.2E-35 7E-40 274.8 11.7 82 3-90 191-283 (588)
35 PRK12820 bifunctional aspartyl 100.0 6.6E-35 1.4E-39 275.6 11.8 80 4-90 207-297 (706)
36 COG0173 AspS Aspartyl-tRNA syn 100.0 2.7E-33 5.9E-38 254.8 9.9 80 5-90 193-283 (585)
37 KOG0555 Asparaginyl-tRNA synth 100.0 5.9E-32 1.3E-36 237.6 6.6 191 1-194 289-544 (545)
38 KOG2411 Aspartyl-tRNA syntheta 100.0 1E-30 2.3E-35 234.6 6.8 80 5-90 231-321 (628)
39 cd00645 AsnA Asparagine synthe 98.0 7E-06 1.5E-10 71.2 4.3 65 122-188 223-299 (309)
40 PRK05425 asparagine synthetase 97.9 1.6E-05 3.4E-10 69.6 4.3 64 122-187 233-308 (327)
41 TIGR00669 asnA aspartate--ammo 97.8 2.3E-05 4.9E-10 68.5 4.6 63 123-187 241-315 (330)
42 PTZ00213 asparagine synthetase 97.7 3E-05 6.6E-10 68.1 4.2 63 123-187 260-334 (348)
43 TIGR00470 sepS O-phosphoseryl- 97.3 0.0005 1.1E-08 63.4 6.0 25 22-46 208-233 (533)
44 cd00768 class_II_aaRS-like_cor 97.1 0.00024 5.1E-09 57.2 1.4 45 2-46 52-102 (211)
45 PRK09537 pylS pyrolysyl-tRNA s 96.3 0.0017 3.8E-08 59.2 1.6 44 3-46 258-307 (417)
46 PF01409 tRNA-synt_2d: tRNA sy 96.0 0.0021 4.5E-08 54.8 0.3 26 21-46 102-127 (247)
47 TIGR02367 PylS pyrrolysyl-tRNA 95.7 0.0067 1.5E-07 55.7 2.3 44 3-46 294-343 (453)
48 PTZ00326 phenylalanyl-tRNA syn 95.4 0.0061 1.3E-07 56.8 1.2 25 22-46 358-382 (494)
49 PLN02853 Probable phenylalanyl 95.4 0.0048 1E-07 57.3 0.5 25 22-46 343-367 (492)
50 PRK00488 pheS phenylalanyl-tRN 95.2 0.014 3E-07 52.0 2.8 40 6-46 170-210 (339)
51 cd00496 PheRS_alpha_core Pheny 95.1 0.014 3E-07 48.5 2.3 57 128-191 153-218 (218)
52 TIGR00468 pheS phenylalanyl-tR 94.7 0.015 3.3E-07 50.7 1.4 56 128-190 222-286 (294)
53 KOG2784 Phenylalanyl-tRNA synt 94.3 0.031 6.6E-07 50.3 2.6 35 10-46 322-358 (483)
54 PRK04172 pheS phenylalanyl-tRN 94.1 0.04 8.6E-07 51.3 2.9 54 128-188 421-480 (489)
55 COG0016 PheS Phenylalanyl-tRNA 94.0 0.018 3.8E-07 51.2 0.5 26 21-46 192-217 (335)
56 PLN02788 phenylalanine-tRNA sy 91.9 0.13 2.8E-06 47.0 2.8 30 17-46 143-172 (402)
57 PF00587 tRNA-synt_2b: tRNA sy 91.3 0.068 1.5E-06 42.4 0.3 24 23-46 85-111 (173)
58 PF01409 tRNA-synt_2d: tRNA sy 91.1 0.079 1.7E-06 45.2 0.6 26 163-188 212-239 (247)
59 cd00768 class_II_aaRS-like_cor 88.6 0.08 1.7E-06 42.3 -1.3 49 125-173 153-211 (211)
60 PLN02853 Probable phenylalanyl 88.0 0.19 4.2E-06 46.9 0.6 46 151-198 435-491 (492)
61 COG0124 HisS Histidyl-tRNA syn 87.7 0.31 6.8E-06 44.9 1.8 25 22-46 102-126 (429)
62 cd00774 GlyRS-like_core Glycyl 87.5 0.16 3.5E-06 43.2 -0.2 25 22-46 108-135 (254)
63 COG0016 PheS Phenylalanyl-tRNA 86.8 0.25 5.5E-06 44.0 0.7 27 165-191 304-331 (335)
64 PRK00488 pheS phenylalanyl-tRN 86.6 0.35 7.6E-06 43.2 1.5 40 150-191 289-334 (339)
65 PRK00037 hisS histidyl-tRNA sy 86.1 0.44 9.5E-06 42.9 1.9 26 21-46 98-123 (412)
66 cd00773 HisRS-like_core Class 85.8 0.51 1.1E-05 40.0 2.0 25 22-46 83-107 (261)
67 cd00670 Gly_His_Pro_Ser_Thr_tR 84.9 0.31 6.8E-06 40.1 0.3 25 22-46 89-116 (235)
68 TIGR00442 hisS histidyl-tRNA s 84.6 0.54 1.2E-05 42.2 1.7 25 22-46 98-122 (397)
69 PTZ00326 phenylalanyl-tRNA syn 82.1 0.53 1.1E-05 44.1 0.6 35 151-187 450-489 (494)
70 TIGR02367 PylS pyrrolysyl-tRNA 80.9 0.69 1.5E-05 42.8 0.9 28 158-185 409-439 (453)
71 COG2024 Phenylalanyl-tRNA synt 78.3 1.4 3.1E-05 40.1 2.1 37 154-190 314-354 (536)
72 KOG2783 Phenylalanyl-tRNA synt 73.6 1.9 4.1E-05 39.2 1.6 25 165-189 298-323 (436)
73 PLN02788 phenylalanine-tRNA sy 71.8 2.1 4.5E-05 39.2 1.4 56 127-187 230-289 (402)
74 TIGR00443 hisZ_biosyn_reg ATP 71.1 3.8 8.3E-05 35.7 2.9 25 22-46 88-112 (314)
75 PRK12292 hisZ ATP phosphoribos 70.1 4.2 9.1E-05 36.7 3.0 25 22-46 99-123 (391)
76 cd00778 ProRS_core_arch_euk Pr 69.3 1.5 3.2E-05 37.4 -0.1 24 23-46 121-147 (261)
77 TIGR00469 pheS_mito phenylalan 68.7 1.7 3.7E-05 40.4 0.2 24 23-46 135-158 (460)
78 cd00772 ProRS_core Prolyl-tRNA 67.9 3.4 7.3E-05 35.4 1.8 24 23-46 121-147 (264)
79 PRK09537 pylS pyrolysyl-tRNA s 66.8 3.1 6.8E-05 38.2 1.5 27 158-184 373-402 (417)
80 CHL00201 syh histidine-tRNA sy 66.7 3.4 7.4E-05 37.8 1.7 25 22-46 103-127 (430)
81 PRK12305 thrS threonyl-tRNA sy 65.0 3.3 7.3E-05 39.1 1.4 24 23-46 290-317 (575)
82 cd00779 ProRS_core_prok Prolyl 63.5 1.5 3.2E-05 37.3 -1.2 24 23-46 115-141 (255)
83 TIGR00414 serS seryl-tRNA synt 63.4 4 8.7E-05 37.4 1.5 44 3-46 227-284 (418)
84 PRK09194 prolyl-tRNA synthetas 62.4 3.9 8.5E-05 38.8 1.3 24 23-46 131-157 (565)
85 PRK12421 ATP phosphoribosyltra 61.3 5.2 0.00011 36.2 1.8 25 22-46 102-126 (392)
86 TIGR00409 proS_fam_II prolyl-t 60.4 4.3 9.4E-05 38.7 1.2 24 23-46 131-157 (568)
87 cd00770 SerRS_core Seryl-tRNA 59.8 2.5 5.4E-05 36.8 -0.5 25 22-46 132-163 (297)
88 PRK12293 hisZ ATP phosphoribos 59.8 5.6 0.00012 34.4 1.7 19 22-46 96-114 (281)
89 PRK12325 prolyl-tRNA synthetas 59.5 2.7 5.9E-05 38.6 -0.3 25 22-46 130-157 (439)
90 PRK04173 glycyl-tRNA synthetas 59.3 3.5 7.7E-05 38.2 0.4 25 22-46 187-214 (456)
91 KOG2324 Prolyl-tRNA synthetase 59.2 11 0.00023 34.4 3.3 24 23-46 137-163 (457)
92 COG2502 AsnA Asparagine synthe 57.7 14 0.00031 32.0 3.8 63 122-185 240-313 (330)
93 TIGR00468 pheS phenylalanyl-tR 57.1 6 0.00013 34.5 1.4 25 22-46 151-175 (294)
94 cd00771 ThrRS_core Threonyl-tR 57.0 7.2 0.00016 33.8 1.9 24 23-46 113-140 (298)
95 PRK12420 histidyl-tRNA synthet 56.4 7.4 0.00016 35.4 2.0 24 23-46 101-124 (423)
96 PLN02530 histidine-tRNA ligase 56.1 7.4 0.00016 36.3 1.9 25 22-46 165-189 (487)
97 PRK05431 seryl-tRNA synthetase 55.1 5.3 0.00011 36.7 0.8 45 2-46 224-282 (425)
98 PRK14799 thrS threonyl-tRNA sy 54.6 3.5 7.6E-05 39.2 -0.5 24 23-46 251-278 (545)
99 TIGR00408 proS_fam_I prolyl-tR 54.1 7.4 0.00016 36.2 1.6 24 23-46 127-153 (472)
100 COG0423 GRS1 Glycyl-tRNA synth 53.2 7 0.00015 37.0 1.3 23 24-46 190-215 (558)
101 PRK00413 thrS threonyl-tRNA sy 53.1 4.2 9.2E-05 38.9 -0.2 24 23-46 354-381 (638)
102 PLN02908 threonyl-tRNA synthet 50.8 8.5 0.00019 37.5 1.5 24 23-46 404-431 (686)
103 PRK04172 pheS phenylalanyl-tRN 50.5 9.2 0.0002 35.7 1.6 25 22-46 351-375 (489)
104 PLN02837 threonine-tRNA ligase 50.5 9.4 0.0002 36.7 1.7 25 22-46 330-358 (614)
105 PRK08661 prolyl-tRNA synthetas 49.4 6 0.00013 36.8 0.2 25 22-46 132-158 (477)
106 PRK12292 hisZ ATP phosphoribos 49.2 13 0.00029 33.4 2.4 23 152-176 295-319 (391)
107 PRK12444 threonyl-tRNA synthet 47.7 11 0.00024 36.2 1.8 24 23-46 357-384 (639)
108 CHL00201 syh histidine-tRNA sy 47.7 17 0.00037 33.2 2.9 25 152-177 289-315 (430)
109 PRK12421 ATP phosphoribosyltra 47.5 15 0.00033 33.2 2.6 24 152-177 302-327 (392)
110 TIGR00418 thrS threonyl-tRNA s 47.5 11 0.00024 35.5 1.7 24 23-46 284-311 (563)
111 PRK01584 alanyl-tRNA synthetas 46.0 13 0.00029 35.7 2.0 43 4-46 36-86 (594)
112 cd00673 AlaRS_core Alanyl-tRNA 45.5 12 0.00025 31.9 1.3 25 22-46 56-85 (232)
113 PRK07080 hypothetical protein; 45.4 5.8 0.00013 35.1 -0.5 24 23-46 153-178 (317)
114 cd00773 HisRS-like_core Class 44.3 22 0.00047 30.0 2.9 24 152-176 234-259 (261)
115 TIGR00469 pheS_mito phenylalan 43.2 19 0.00042 33.5 2.5 23 165-187 317-340 (460)
116 PRK12295 hisZ ATP phosphoribos 43.1 13 0.00029 33.5 1.4 22 22-46 83-104 (373)
117 PRK09616 pheT phenylalanyl-tRN 42.2 12 0.00027 35.4 1.1 24 23-46 440-463 (552)
118 PF13393 tRNA-synt_His: Histid 41.5 8.5 0.00018 33.1 -0.1 26 21-46 88-113 (311)
119 KOG2330 Splicing factor 3b, su 41.2 28 0.0006 32.2 3.1 55 107-163 231-305 (500)
120 PLN02734 glycyl-tRNA synthetas 40.3 14 0.00031 36.1 1.2 23 24-46 278-303 (684)
121 TIGR00418 thrS threonyl-tRNA s 38.7 15 0.00032 34.7 1.0 14 164-177 442-456 (563)
122 COG0124 HisS Histidyl-tRNA syn 38.3 18 0.0004 33.4 1.6 30 152-182 297-328 (429)
123 PRK14894 glycyl-tRNA synthetas 38.2 18 0.00039 34.3 1.5 23 24-46 168-193 (539)
124 PLN02972 Histidyl-tRNA synthet 37.9 13 0.00029 36.8 0.6 25 22-46 418-442 (763)
125 PLN02972 Histidyl-tRNA synthet 36.6 18 0.00039 35.9 1.3 26 152-177 627-653 (763)
126 TIGR00389 glyS_dimeric glycyl- 36.4 13 0.00029 35.4 0.4 24 23-46 185-211 (551)
127 PF12109 CXCR4_N: CXCR4 Chemok 32.0 16 0.00035 21.4 0.1 10 28-37 21-30 (33)
128 TIGR00344 alaS alanine--tRNA l 31.6 30 0.00065 34.8 1.9 26 21-46 53-83 (851)
129 TIGR00443 hisZ_biosyn_reg ATP 31.0 30 0.00066 30.1 1.7 23 152-176 287-311 (314)
130 PRK12293 hisZ ATP phosphoribos 31.0 19 0.00041 31.1 0.4 14 163-176 264-278 (281)
131 PF05953 Allatostatin: Allatos 29.8 24 0.00052 15.7 0.4 7 163-169 4-11 (11)
132 PRK10424 ilvG operon leader pe 29.7 17 0.00037 20.9 -0.1 9 161-169 20-28 (32)
133 KOG2298 Glycyl-tRNA synthetase 28.9 11 0.00025 35.3 -1.4 24 25-48 213-239 (599)
134 PF14545 DBB: Dof, BCAP, and B 28.7 24 0.00053 27.7 0.6 21 148-168 120-140 (142)
135 TIGR00442 hisS histidyl-tRNA s 28.6 51 0.0011 29.4 2.8 23 152-174 284-307 (397)
136 PLN02678 seryl-tRNA synthetase 28.0 33 0.00071 31.9 1.4 15 22-36 256-270 (448)
137 PRK12420 histidyl-tRNA synthet 27.7 32 0.00068 31.3 1.3 26 152-177 301-329 (423)
138 PRK00037 hisS histidyl-tRNA sy 27.1 52 0.0011 29.5 2.6 26 152-177 285-311 (412)
139 PRK13902 alaS alanyl-tRNA synt 26.6 40 0.00087 34.1 1.9 47 126-183 198-253 (900)
140 COG0442 ProS Prolyl-tRNA synth 26.1 24 0.00053 33.3 0.3 25 22-46 130-157 (500)
141 PRK00252 alaS alanyl-tRNA synt 25.3 45 0.00096 33.6 1.9 26 21-46 58-88 (865)
142 KOG0188 Alanyl-tRNA synthetase 24.9 43 0.00094 33.2 1.7 29 18-46 54-91 (895)
143 PRK04173 glycyl-tRNA synthetas 24.2 34 0.00073 31.8 0.8 13 162-174 319-333 (456)
144 TIGR03683 A-tRNA_syn_arch alan 24.2 47 0.001 33.6 1.9 53 126-183 194-257 (902)
145 KOG1936 Histidyl-tRNA syntheta 23.9 45 0.00098 31.1 1.5 24 23-46 152-177 (518)
146 KOG4235 Mitochondrial thymidin 23.9 56 0.0012 27.6 1.9 16 3-18 158-173 (244)
147 cd00769 PheRS_beta_core Phenyl 23.8 40 0.00087 27.1 1.1 14 22-35 79-92 (198)
148 COG0013 AlaS Alanyl-tRNA synth 23.3 45 0.00099 33.6 1.5 25 22-46 63-92 (879)
149 PRK03991 threonyl-tRNA synthet 23.1 37 0.0008 32.8 0.9 25 22-46 309-338 (613)
150 PLN02530 histidine-tRNA ligase 22.1 79 0.0017 29.4 2.8 26 152-177 363-389 (487)
151 PRK09348 glyQ glycyl-tRNA synt 21.1 62 0.0013 28.1 1.7 53 125-186 126-181 (283)
152 PLN02320 seryl-tRNA synthetase 20.2 57 0.0012 30.8 1.5 15 22-36 314-328 (502)
No 1
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-55 Score=397.87 Aligned_cols=190 Identities=38% Similarity=0.597 Sum_probs=154.8
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH--------------HHHHHHHHhhHHHhcCCC-C
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM--------------WMVMELKGSCKIRYHSNG-P 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm--------------~l~~~i~~~~~~~~~~~~-~ 65 (199)
+++|||+|||||||+|++||++||||||++||||+.+.+||||||| ++.++++..+.....+.. .
T Consensus 228 ~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v 307 (502)
T COG1190 228 MDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKV 307 (502)
T ss_pred CceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 5799999999999999999999999999999999999999999999 222233322222211100 0
Q ss_pred CCCCccccCCCCceeeeHHHHHHhhcCCC---CCH-H---------------H----Hhc-------------cc-chhh
Q 048360 66 ENEPIEIDFMPPFRKLDMIAEMERPANIC---MPK-I---------------F----LLM-------------LL-PKLS 108 (199)
Q Consensus 66 ~~~~~~~~~~~p~~rity~ea~~~~~G~~---~~~-~---------------~----L~~-------------li-p~fv 108 (199)
.-...++++++||+|+|+.||+++++|++ ..+ + . ++. ++ ||||
T Consensus 308 ~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv 387 (502)
T COG1190 308 TYGGQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFV 387 (502)
T ss_pred EECCEeEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhcCCcee
Confidence 11235689999999999999999999974 111 1 0 111 22 9999
Q ss_pred ccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCC
Q 048360 109 TDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQT 162 (199)
Q Consensus 109 ~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~p 162 (199)
+|| +|||||.++++|++|+||||||+|.| .++.|+++++.+|++||+|++||||
T Consensus 388 ~d~P~eiSPLak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmP 467 (502)
T COG1190 388 TDHPVEISPLAKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMP 467 (502)
T ss_pred ecCccccCccccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCC
Confidence 999 99999999999999999999999999 3567888899999999999999999
Q ss_pred CC-cceecHHHHH-HHhCCCccceeeecCC
Q 048360 163 IS-YFATLIDGVS-FVTETKERHLVYARAH 190 (199)
Q Consensus 163 Ph-G~giGleRl~-~l~g~~~i~~v~~~~~ 190 (199)
|+ |+|||||||+ .|||+++||+|+++-.
T Consensus 468 PTgG~GiGIDRLvMllT~~~sIRdVilFP~ 497 (502)
T COG1190 468 PTGGLGIGIDRLVMLLTNSPSIRDVILFPA 497 (502)
T ss_pred CCCCccccHHHHHHHHcCCCchhheecccc
Confidence 99 9999999976 8899999999988643
No 2
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=3.6e-54 Score=395.92 Aligned_cols=188 Identities=35% Similarity=0.538 Sum_probs=148.6
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCCC-C
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSNG-P 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~-~ 65 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| ++ +++++..+........ .
T Consensus 220 ~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~ 299 (496)
T TIGR00499 220 MDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKI 299 (496)
T ss_pred CceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccce
Confidence 4689999999999999999999999999999999999999999999 22 2222222211111110 0
Q ss_pred CCCCccccCCCCceeeeHHHHHH---hhcCCCCCH----H----------------------HHhc---------cc-ch
Q 048360 66 ENEPIEIDFMPPFRKLDMIAEME---RPANICMPK----I----------------------FLLM---------LL-PK 106 (199)
Q Consensus 66 ~~~~~~~~~~~p~~rity~ea~~---~~~G~~~~~----~----------------------~L~~---------li-p~ 106 (199)
......++++.||+|+||.||++ +.+|+++.. + .+.+ +. |+
T Consensus 300 ~~~~~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l~~P~ 379 (496)
T TIGR00499 300 TYGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTLIQPT 379 (496)
T ss_pred ecCceeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhccCCCE
Confidence 11223467788999999999999 667866421 0 1111 11 99
Q ss_pred hhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcC
Q 048360 107 LSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKK 160 (199)
Q Consensus 107 fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G 160 (199)
||+|| ++||||++++||++++||||||+|+| .++.|+++++.+|+|||+|++||
T Consensus 380 fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G 459 (496)
T TIGR00499 380 FITHYPAEISPLAKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYG 459 (496)
T ss_pred EEECCchhcCcccccCCCCCCeEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcC
Confidence 99999 99999999999999999999999999 13567777778899999999999
Q ss_pred CCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 161 QTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 161 ~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
|||| |||||||||+ ++||++||++|++.
T Consensus 460 ~PP~gG~GiGiDRLvMlltg~~~Irdvi~F 489 (496)
T TIGR00499 460 MPPTGGLGIGIDRLVMLLTDSKSIRDVILF 489 (496)
T ss_pred CCCCceEEEhHHHHHHHHhCCCcHheeccC
Confidence 9999 9999999965 99999999988875
No 3
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-54 Score=395.93 Aligned_cols=188 Identities=31% Similarity=0.465 Sum_probs=147.0
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCC-CC
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSN-GP 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~-~~ 65 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| ++ +++++..+....... ..
T Consensus 232 ~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~ 311 (505)
T PRK12445 232 LDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKV 311 (505)
T ss_pred cceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccce
Confidence 4689999999999999999999999999999999999999999999 22 222222221111110 00
Q ss_pred CCCCccccCCCCceeeeHHHHHHhhcC-CCCC--------------------H----H-HHhc---------cc-chhhc
Q 048360 66 ENEPIEIDFMPPFRKLDMIAEMERPAN-ICMP--------------------K----I-FLLM---------LL-PKLST 109 (199)
Q Consensus 66 ~~~~~~~~~~~p~~rity~ea~~~~~G-~~~~--------------------~----~-~L~~---------li-p~fv~ 109 (199)
......++++.||+|+||.||++++.| +++. . + .+.+ +. |+||+
T Consensus 312 ~~~~~~i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vE~~l~~P~Fv~ 391 (505)
T PRK12445 312 TYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFIT 391 (505)
T ss_pred ecCceeccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 111233577789999999999999876 2321 0 0 0111 12 99999
Q ss_pred cc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCCC
Q 048360 110 DH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQTI 163 (199)
Q Consensus 110 dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~pP 163 (199)
|| ++||||.+++||++++||||||+|.| .++.|+++++++|+|||+|++|||||
T Consensus 392 dyP~~~splak~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP 471 (505)
T PRK12445 392 EYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPP 471 (505)
T ss_pred CCCchhCcccccCCCCCCceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCC
Confidence 99 99999999999999999999999999 12447777888999999999999999
Q ss_pred C-cceecHHHHH-HHhCCCccceeeec
Q 048360 164 S-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 164 h-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
| |||||||||+ ++||.+||++|++.
T Consensus 472 ~gG~GiGiDRLvMlltg~~sIrdvi~F 498 (505)
T PRK12445 472 TAGLGIGIDRMIMLFTNSHTIRDVILF 498 (505)
T ss_pred CCeEEEhHHHHHHHHcCCCchheEecC
Confidence 9 9999999966 99999999988875
No 4
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=4e-53 Score=368.47 Aligned_cols=175 Identities=24% Similarity=0.278 Sum_probs=140.8
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPI 70 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~ 70 (199)
++||+||||||||+++++|++||||||||||||++++|||||||| +++..+.+.+...+.
T Consensus 54 ~~yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~--------- 124 (304)
T TIGR00462 54 PLYLQTSPEYAMKRLLAAGSGPIFQICKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLG--------- 124 (304)
T ss_pred ceeeecCHHHHHHHHHhccCCCEEEEcCceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Confidence 689999999999999999999999999999999999999999999 222222222211111
Q ss_pred cccCCCCceeeeHHHHHHhhcCCCCCH---------------------H-------HHhccc--------chhhccc---
Q 048360 71 EIDFMPPFRKLDMIAEMERPANICMPK---------------------I-------FLLMLL--------PKLSTDH--- 111 (199)
Q Consensus 71 ~~~~~~p~~rity~ea~~~~~G~~~~~---------------------~-------~L~~li--------p~fv~dy--- 111 (199)
.++.||+|+||.||+++++|+++.. + .+.+++ |+|||||
T Consensus 125 --~~~~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~ 202 (304)
T TIGR00462 125 --DPFAPWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPAS 202 (304)
T ss_pred --hcCCCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccc
Confidence 1356999999999999887776421 0 122221 9999999
Q ss_pred CCCcccccCCCCceeEEEEEeecchh------------------------hhhcCCccccCCcHHHHHHHhcCCCCC-cc
Q 048360 112 MSPLAKGHRSKPGLTLRLELFVNKRE------------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YF 166 (199)
Q Consensus 112 ~~plak~~~~~p~~~~rFel~i~G~E------------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~ 166 (199)
++||||++++||++++|||||++|+| +++.|. +..++|+|||+|++|||||| ||
T Consensus 203 ~~~~~~~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~-~~~~~d~~yl~~~~~G~pP~~G~ 281 (304)
T TIGR00462 203 QAALARISPDDPRVAERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGL-PRYPLDERFLAALEAGLPECSGV 281 (304)
T ss_pred cCcCccccCCCCCeeEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHcCCCCCCce
Confidence 89999999999999999999999988 112344 44678899999999999999 99
Q ss_pred eecHHHHH-HHhCCCccceeeec
Q 048360 167 ATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 167 giGleRl~-~l~g~~~i~~v~~~ 188 (199)
|||+|||+ +++|++||++|+|.
T Consensus 282 GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 282 ALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred EEcHHHHHHHHhCCCchhhcccC
Confidence 99999966 99999999999874
No 5
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=2.8e-53 Score=393.09 Aligned_cols=189 Identities=43% Similarity=0.674 Sum_probs=149.3
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCC-CC
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSN-GP 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~-~~ 65 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| ++ +++++..+....... ..
T Consensus 277 ~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~ 356 (553)
T PLN02502 277 MDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKI 356 (553)
T ss_pred cceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4789999999999999999999999999999999999999999999 22 222222111111110 00
Q ss_pred CCCCccccCCCCceeeeHHHHHHhhcCCCCCH----H----H---------------------Hh----c-----cc-ch
Q 048360 66 ENEPIEIDFMPPFRKLDMIAEMERPANICMPK----I----F---------------------LL----M-----LL-PK 106 (199)
Q Consensus 66 ~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~----~----~---------------------L~----~-----li-p~ 106 (199)
......+++..||+|+||.||++++.|+++.. + . |. + ++ ||
T Consensus 357 ~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l~~Pt 436 (553)
T PLN02502 357 KYHGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPT 436 (553)
T ss_pred ccCCccccCCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCE
Confidence 11224567888999999999999998876542 1 0 00 1 11 99
Q ss_pred hhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcC
Q 048360 107 LSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKK 160 (199)
Q Consensus 107 fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G 160 (199)
||+|| ++||||++++||++++||||||+|+| .+..++++++++|++||+|++||
T Consensus 437 FV~dyP~~~splak~~~~~p~~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyG 516 (553)
T PLN02502 437 FVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYG 516 (553)
T ss_pred EEECCccccCcccccCCCCCCeEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcC
Confidence 99999 99999999999999999999999999 12345566788999999999999
Q ss_pred CCCC-cceecHHHHH-HHhCCCccceeeecC
Q 048360 161 QTIS-YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 161 ~pPh-G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
|||| |||||||||+ ++||++||++|+++-
T Consensus 517 mPP~gG~GiGiDRLvMlltg~~sIrdVi~FP 547 (553)
T PLN02502 517 LPPTGGWGLGIDRLVMLLTDSASIRDVIAFP 547 (553)
T ss_pred CCCCceEEehHHHHHHHHcCCcchheeecCC
Confidence 9999 9999999966 999999999988753
No 6
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5e-53 Score=388.06 Aligned_cols=189 Identities=38% Similarity=0.586 Sum_probs=148.0
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCC-CC
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSN-GP 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~-~~ 65 (199)
.++||+||||||||+|++||++||||||||||||++++|||||||| ++ +++++..+....... ..
T Consensus 220 ~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i 299 (491)
T PRK00484 220 IDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKV 299 (491)
T ss_pred CceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 3689999999999999999999999999999999999999999999 22 223322221111110 00
Q ss_pred CCCCccccCCCCceeeeHHHHHHhhcCCCCC---HH---------------------HHh----cc-----c-chhhccc
Q 048360 66 ENEPIEIDFMPPFRKLDMIAEMERPANICMP---KI---------------------FLL----ML-----L-PKLSTDH 111 (199)
Q Consensus 66 ~~~~~~~~~~~p~~rity~ea~~~~~G~~~~---~~---------------------~L~----~l-----i-p~fv~dy 111 (199)
......++++.||+|+||.||++++.|+++. .+ .+. .+ . |||||||
T Consensus 300 ~~~~~~~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fi~dy 379 (491)
T PRK00484 300 TYQGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPTFITDY 379 (491)
T ss_pred ecCCEeecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhhcCCcEEEECC
Confidence 0112345677899999999999999887653 10 011 11 1 9999999
Q ss_pred ---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCCCC-
Q 048360 112 ---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS- 164 (199)
Q Consensus 112 ---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh- 164 (199)
++||||.+++||++++||||||+|+| .++.|+++++++|+|||+|++||||||
T Consensus 380 P~~~~pf~k~~~~~~~~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~g 459 (491)
T PRK00484 380 PVEISPLAKRHREDPGLTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTG 459 (491)
T ss_pred ChHHhhhhccCCCCCCeEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCC
Confidence 99999999999999999999999998 123466666778999999999999999
Q ss_pred cceecHHHHH-HHhCCCccceeeecC
Q 048360 165 YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
|||||+|||+ ++||.+||++|+|.-
T Consensus 460 G~GiGiDRLvm~ltg~~~Irdvi~FP 485 (491)
T PRK00484 460 GLGIGIDRLVMLLTDSPSIRDVILFP 485 (491)
T ss_pred eEEEeHHHHHHHHhCCCcHHhcccCC
Confidence 9999999965 999999999887753
No 7
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-54 Score=381.68 Aligned_cols=190 Identities=46% Similarity=0.759 Sum_probs=166.5
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH----------------------HHHHHHHHhhHH
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----------------------WMVMELKGSCKI 58 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm----------------------~l~~~i~~~~~~ 58 (199)
|++|||+|||||+|||++||++||||||+.||||+.+.+||||||. .|++++.+++++
T Consensus 273 m~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i 352 (560)
T KOG1885|consen 273 MDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKI 352 (560)
T ss_pred cceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeE
Confidence 5799999999999999999999999999999999999999999998 234556666777
Q ss_pred HhcCCCCCCCCccccCCCCceeeeHHHHHHhhcCCCCCH-H---------H---------------------Hhccc---
Q 048360 59 RYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK-I---------F---------------------LLMLL--- 104 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~-~---------~---------------------L~~li--- 104 (199)
.|++++.+.+..+++|+.||+|+++.+.+++.+|+++++ + . |.+|+
T Consensus 353 ~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~f 432 (560)
T KOG1885|consen 353 TYHPNGPEEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEF 432 (560)
T ss_pred eecCCCCCCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHh
Confidence 888776655667889999999999999999999998764 1 1 11121
Q ss_pred -------chhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcH
Q 048360 105 -------PKLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151 (199)
Q Consensus 105 -------p~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~ 151 (199)
||||+|| +|||||.+.+++++|+||||||+|.| .+..|+++++.+|+
T Consensus 433 lE~~cvnPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De 512 (560)
T KOG1885|consen 433 LEPTCVNPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDE 512 (560)
T ss_pred hccccCCCeeEcCCchhcCccccccccccchhhHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccH
Confidence 9999999 99999999999999999999999999 24668889999999
Q ss_pred HHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeeecCC
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYARAH 190 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~~~~ 190 (199)
+|++|++|||||. |||||||||+ .+|+++||++|+++-.
T Consensus 513 ~Fc~ALEYGlPPtgGwGmGIDRL~MllTds~~I~EVL~Fp~ 553 (560)
T KOG1885|consen 513 DFCTALEYGLPPTGGWGMGIDRLVMLLTDSNNIREVLLFPA 553 (560)
T ss_pred HHHHHHHcCCCCCCccccchhhhhhhhcCCcchhheeeccc
Confidence 9999999999999 9999999977 8899999999998754
No 8
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1.4e-52 Score=390.03 Aligned_cols=188 Identities=40% Similarity=0.675 Sum_probs=149.0
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHH---HHHHHhhHHH-------
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMV---MELKGSCKIR------- 59 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~---~~i~~~~~~~------- 59 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| +++ ++++..+...
T Consensus 301 ~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~ 380 (585)
T PTZ00417 301 LDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKI 380 (585)
T ss_pred cceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCccee
Confidence 4689999999999999999999999999999999999999999999 232 2333222111
Q ss_pred -hcCCCCCCCCccccCCCCceeeeHHHHHHhhcCCCCCH--------H---------------------HHhc-------
Q 048360 60 -YHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK--------I---------------------FLLM------- 102 (199)
Q Consensus 60 -~~~~~~~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~--------~---------------------~L~~------- 102 (199)
+...+.......+++..||+|+||.||+++++|+++.. + .|..
T Consensus 381 ~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE 460 (585)
T PTZ00417 381 LYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIE 460 (585)
T ss_pred eecccccccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 11100000113467788999999999999998876421 0 1111
Q ss_pred --cc--chhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHH
Q 048360 103 --LL--PKLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGS 152 (199)
Q Consensus 103 --li--p~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~ 152 (199)
+. ||||||| ++||||.+++||++++||||||+|+| .++.|+++++++|++
T Consensus 461 ~~l~~~PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~~g~~e~~~~Ded 540 (585)
T PTZ00417 461 NKYPNKPFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFDAA 540 (585)
T ss_pred HhhCCCcEEEECCChhhCchhhhcCCCCCeEEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHHcCCCcccccHHH
Confidence 12 9999999 99999999999999999999999999 234576678889999
Q ss_pred HHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 153 FCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 153 yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
||+|++|||||| |||||||||+ ++||++||++|++.
T Consensus 541 fl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~F 578 (585)
T PTZ00417 541 FCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILF 578 (585)
T ss_pred HHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecC
Confidence 999999999999 9999999966 99999999988875
No 9
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.7e-52 Score=388.60 Aligned_cols=188 Identities=35% Similarity=0.559 Sum_probs=148.5
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCCCC-
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSNGP- 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~~- 65 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| ++ +++++..+.........
T Consensus 281 ~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~ 360 (659)
T PTZ00385 281 MDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVV 360 (659)
T ss_pred CCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeE
Confidence 3689999999999999999999999999999999999999999999 22 23333222111111000
Q ss_pred -C------CCCccccCCCCceeeeHHHHHHhhcCCCCCH-------HHH--------------------h--------c-
Q 048360 66 -E------NEPIEIDFMPPFRKLDMIAEMERPANICMPK-------IFL--------------------L--------M- 102 (199)
Q Consensus 66 -~------~~~~~~~~~~p~~rity~ea~~~~~G~~~~~-------~~L--------------------~--------~- 102 (199)
. ....++++..||+|+||.|++.+++|+++.. +.+ + .
T Consensus 361 ~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ 440 (659)
T PTZ00385 361 QIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFF 440 (659)
T ss_pred EeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHH
Confidence 0 0012467778999999999999888986531 000 0 0
Q ss_pred ----cc-chhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcH
Q 048360 103 ----LL-PKLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDG 151 (199)
Q Consensus 103 ----li-p~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~ 151 (199)
++ ||||||| ++||||.+++||++++||||||+|.| .++.|+++++++|+
T Consensus 441 ve~~l~qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~De 520 (659)
T PTZ00385 441 ITDRVVEPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDE 520 (659)
T ss_pred HHHhhCCcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHH
Confidence 12 9999999 99999999999999999999999999 23456667788999
Q ss_pred HHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
|||+|++|||||| |||||||||+ ++||++||++|+++
T Consensus 521 dfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilF 559 (659)
T PTZ00385 521 TFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIF 559 (659)
T ss_pred HHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecC
Confidence 9999999999999 9999999965 99999999988774
No 10
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.2e-51 Score=362.61 Aligned_cols=187 Identities=40% Similarity=0.651 Sum_probs=143.6
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHH---HHHHHhhHHHhcCCC-CC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMV---MELKGSCKIRYHSNG-PE 66 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~---~~i~~~~~~~~~~~~-~~ 66 (199)
++||+||||||||+++++|++||||||||||||++++|||||||| +++ ++++..+........ ..
T Consensus 57 ~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~ 136 (329)
T cd00775 57 DLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIE 136 (329)
T ss_pred ceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 589999999999999999999999999999999999999999999 222 222221111111110 00
Q ss_pred CCCccccCCCCceeeeHHHHHHhhcCCCCCH---------------------------H-HHhc----cc------chhh
Q 048360 67 NEPIEIDFMPPFRKLDMIAEMERPANICMPK---------------------------I-FLLM----LL------PKLS 108 (199)
Q Consensus 67 ~~~~~~~~~~p~~rity~ea~~~~~G~~~~~---------------------------~-~L~~----li------p~fv 108 (199)
.....++++.||+|+||.||+++++|+++.. + .|.. .+ |+||
T Consensus 137 ~~~~~~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~~~p~fi 216 (329)
T cd00775 137 YGGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQPTFI 216 (329)
T ss_pred cCCccccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhccccCCCEEE
Confidence 1112234457999999999999998875421 0 1111 11 8999
Q ss_pred ccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCC
Q 048360 109 TDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQT 162 (199)
Q Consensus 109 ~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~p 162 (199)
+|| ++||||.+++||++++|||||++|+| +++.+.++..++|+|||+|++||||
T Consensus 217 ~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~p 296 (329)
T cd00775 217 IDHPVEISPLAKRHRSNPGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMP 296 (329)
T ss_pred ECCChHhCcCcCcCCCCCCeeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCC
Confidence 999 99999999999999999999999999 1223444556678999999999999
Q ss_pred CC-cceecHHHHH-HHhCCCccceeeec
Q 048360 163 IS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 163 Ph-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
|| |||||+|||+ +++|.+||++|.|.
T Consensus 297 p~~G~glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 297 PTGGLGIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred CCCcEEecHHHHHHHHcCCCcHHhcccC
Confidence 99 9999999965 99999999988775
No 11
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.8e-50 Score=394.68 Aligned_cols=187 Identities=30% Similarity=0.428 Sum_probs=145.2
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCCC--
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSNG-- 64 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~-- 64 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| ++ +++++..+........
T Consensus 818 ~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~ 897 (1094)
T PRK02983 818 MDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPVV 897 (1094)
T ss_pred ccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 4689999999999999999999999999999999999999999999 22 2222222211111100
Q ss_pred ----CCCCCccccCCCCceeeeHHHHHHhhcCCCCCH----H--------------------HH----h-cc-----c-c
Q 048360 65 ----PENEPIEIDFMPPFRKLDMIAEMERPANICMPK----I--------------------FL----L-ML-----L-P 105 (199)
Q Consensus 65 ----~~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~----~--------------------~L----~-~l-----i-p 105 (199)
.......++++.||+|+||.||++++.|+++.. + .+ . .+ . |
T Consensus 898 ~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~~P 977 (1094)
T PRK02983 898 MRPDGDGVLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFP 977 (1094)
T ss_pred eeCCccccccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCC
Confidence 001112367788999999999999888876431 0 00 0 01 1 9
Q ss_pred hhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhc
Q 048360 106 KLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAK 159 (199)
Q Consensus 106 ~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~ 159 (199)
+||||| +|||||++++||++++|||||++|+| .++.++++++++|+|||+|++|
T Consensus 978 ~Fv~dyP~~~spla~~~~~~p~~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~y 1057 (1094)
T PRK02983 978 TFYTDFPTSVSPLTRPHRSDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEY 1057 (1094)
T ss_pred EEEECCCcccccccccCCCCCCeeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHc
Confidence 999999 99999999999999999999999999 1233455668899999999999
Q ss_pred CCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 160 KQTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 160 G~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
||||| |||||+|||+ ++||. ||++|++.
T Consensus 1058 GmPP~gG~GiGiDRLvM~ltg~-sIRdvi~F 1087 (1094)
T PRK02983 1058 AMPPTGGLGMGVDRLVMLLTGR-SIRETLPF 1087 (1094)
T ss_pred CCCCCCeEEeeHHHHHHHHhCC-ChheEecC
Confidence 99999 9999999965 88895 99988875
No 12
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=8.9e-50 Score=361.49 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=142.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------HH---HHHHHHhhHHHhcCC-CC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------WM---VMELKGSCKIRYHSN-GP 65 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~-~~ 65 (199)
++||+||||||||+|+++|++||||||||||||+++ +|||||||| ++ +++++..+....... ..
T Consensus 180 ~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~ 259 (428)
T TIGR00458 180 EAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAH 259 (428)
T ss_pred cEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 689999999999999999999999999999999997 699999999 22 222222111111000 00
Q ss_pred CCCCcccc---CCCCceeeeHHHHHHhh--cCCCCCH------H---HHhccc--chhhccc---CCCc-ccccCCCCce
Q 048360 66 ENEPIEID---FMPPFRKLDMIAEMERP--ANICMPK------I---FLLMLL--PKLSTDH---MSPL-AKGHRSKPGL 125 (199)
Q Consensus 66 ~~~~~~~~---~~~p~~rity~ea~~~~--~G~~~~~------~---~L~~li--p~fv~dy---~~pl-ak~~~~~p~~ 125 (199)
+......+ .+.||+|+||.||++.+ .|+++.. + .|++.+ |+||+|| ++|| +|++++||++
T Consensus 260 ~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g~~~~~~~~l~~~~E~~l~~~~~~p~fi~d~P~~~~pfy~~~~~~~p~~ 339 (428)
T TIGR00458 260 QLETLEFKLEKPEGKFVRLTYDEAIEMANAKGVEIGWGEDLSTEAEKALGEEMDGLYFITDWPTEIRPFYTMPDEDNPEI 339 (428)
T ss_pred hhhhcccccccCCCCceEEEHHHHHHHHHHcCCCCCCccccchHHHHHHHHHhCCCEEEEeCchhcCcccccccCCCCCE
Confidence 00011122 24699999999999744 4554331 1 455444 9999999 8999 5889999999
Q ss_pred eEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCcccee-
Q 048360 126 TLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLV- 185 (199)
Q Consensus 126 ~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v- 185 (199)
++|||||++|.| .++.|.++. .++|||+|++|||||| |||||+|||+ +++|.+||++|
T Consensus 340 ~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~--~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~ 417 (428)
T TIGR00458 340 SKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPE--GFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAV 417 (428)
T ss_pred EEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHcCCChH--HHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEE
Confidence 999999999999 234454332 4689999999999999 9999999965 99999999954
Q ss_pred -eecCCCcce
Q 048360 186 -YARAHRGYA 194 (199)
Q Consensus 186 -~~~~~~~~~ 194 (199)
|||+++...
T Consensus 418 ~FPr~~~r~~ 427 (428)
T TIGR00458 418 LFPRDRKRLT 427 (428)
T ss_pred eccCCCCCCC
Confidence 567777654
No 13
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=9.6e-49 Score=344.98 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=136.0
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCC---CCchHHHH-----------HHH---H----HHHHhhHHH
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDL---THLPELTM-----------WMV---M----ELKGSCKIR 59 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~---rHl~EFtm-----------~l~---~----~i~~~~~~~ 59 (199)
+++||+||||+||| ++++|++||||||||||||++++ |||||||| +++ + .++..+.-.
T Consensus 83 ~~~yL~~Spql~k~-ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~ 161 (335)
T PRK06462 83 VEYYLADSMILHKQ-LALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEE 161 (335)
T ss_pred CceeeccCHHHHHH-HHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999955 56778999999999999999976 99999999 222 2 222211111
Q ss_pred hcCCCCCCCCccccCCCCceeeeHHHHHH--hhcCCCCCHH---------HHhccc--chhhccc---CCCcc-cccCCC
Q 048360 60 YHSNGPENEPIEIDFMPPFRKLDMIAEME--RPANICMPKI---------FLLMLL--PKLSTDH---MSPLA-KGHRSK 122 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~~p~~rity~ea~~--~~~G~~~~~~---------~L~~li--p~fv~dy---~~pla-k~~~~~ 122 (199)
+..+..........++.||+||||.||++ +..|.+.... .|.+++ ||||||| ++||+ ++++++
T Consensus 162 ~~~~i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~~~~~~p~fi~~yP~~~~pfy~~~~~~~ 241 (335)
T PRK06462 162 HEDELEFFGRDLPHLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHFEEPFWIIDIPKGSREFYDREDPER 241 (335)
T ss_pred hHHHHHhcCCccccCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHHHHhCCCEEEECCChhhCCcccccCCCC
Confidence 11100000111123467999999999998 4456543321 344444 9999999 79996 567889
Q ss_pred CceeEEEEEee--cchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCc
Q 048360 123 PGLTLRLELFV--NKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKE 181 (199)
Q Consensus 123 p~~~~rFel~i--~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~ 181 (199)
|++++|||||+ ++.| +++.|.++. .++|||+|++|||||| |||||+|||+ +++|.+|
T Consensus 242 ~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~--~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~ 319 (335)
T PRK06462 242 PGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPE--KYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRH 319 (335)
T ss_pred CCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChH--HHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCc
Confidence 99999999999 4345 334555443 3489999999999999 9999999965 9999999
Q ss_pred ccee--eecCCCc
Q 048360 182 RHLV--YARAHRG 192 (199)
Q Consensus 182 i~~v--~~~~~~~ 192 (199)
|++| |||+++.
T Consensus 320 Irdv~~FPr~~g~ 332 (335)
T PRK06462 320 IREVQPFPRVPGI 332 (335)
T ss_pred hheeeeccCCCCC
Confidence 9955 5666654
No 14
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-48 Score=354.74 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=140.4
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH--------H----HH---HHHHHhhHH----Hh
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM--------W----MV---MELKGSCKI----RY 60 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm--------~----l~---~~i~~~~~~----~~ 60 (199)
.++||+||||||||+++++|++||||||||||||+++ +|||||||| + ++ ++++..+.. .+
T Consensus 182 ~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~ 261 (437)
T PRK05159 182 KEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENC 261 (437)
T ss_pred CceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999997 699999999 1 21 222211110 00
Q ss_pred cCCCCCCCCcccc-CCCCceeeeHHHHHHhhc--CCCCCH------H---HHhccc-------chhhccc---CCCc-cc
Q 048360 61 HSNGPENEPIEID-FMPPFRKLDMIAEMERPA--NICMPK------I---FLLMLL-------PKLSTDH---MSPL-AK 117 (199)
Q Consensus 61 ~~~~~~~~~~~~~-~~~p~~rity~ea~~~~~--G~~~~~------~---~L~~li-------p~fv~dy---~~pl-ak 117 (199)
..+.... ...++ .+.||+|+||.||++.+. |.+++. . .|.+++ |+||||| ++|| +|
T Consensus 262 ~~~i~~~-~~~~~~~~~~f~rit~~eA~~~l~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~ 340 (437)
T PRK05159 262 EKELELL-GIELPVPETPIPRITYDEAIEILKSKGNEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTM 340 (437)
T ss_pred HHHHHhh-ccCCCcCCCCceEeEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceee
Confidence 0000000 01122 357999999999998653 443321 1 333333 7999999 8999 67
Q ss_pred ccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhC
Q 048360 118 GHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTE 178 (199)
Q Consensus 118 ~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g 178 (199)
++++||++++|||||++|+| .++.|.++. .++|||+|++|||||| |||||+|||+ +++|
T Consensus 341 ~~~~~~~~~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~--~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g 418 (437)
T PRK05159 341 PDEDDPEISKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPE--SFEFYLEAFKYGMPPHGGFGLGLERLTMKLLG 418 (437)
T ss_pred ecCCCCCEEEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHcCCCHH--HHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcC
Confidence 88999999999999999999 233444332 3489999999999999 9999999965 9999
Q ss_pred CCcccee--eecCCCcce
Q 048360 179 TKERHLV--YARAHRGYA 194 (199)
Q Consensus 179 ~~~i~~v--~~~~~~~~~ 194 (199)
.+||++| |||+++.+.
T Consensus 419 ~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 419 LENIREAVLFPRDRHRLT 436 (437)
T ss_pred CCchhEEeeccCCCCCCC
Confidence 9999954 567777654
No 15
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.9e-48 Score=340.33 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=135.7
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------HHH---HHHHHh----hHHHh
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------WMV---MELKGS----CKIRY 60 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------~l~---~~i~~~----~~~~~ 60 (199)
.++||+||||||||++++| ++||||||||||||+++ +|||||||| +++ ++++.. +....
T Consensus 70 ~~~yL~~Spql~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~ 148 (322)
T cd00776 70 KPAYLAQSPQLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERC 148 (322)
T ss_pred CcceecCCHHHHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3689999999999999887 99999999999999975 799999999 222 222221 11111
Q ss_pred cCCCCC---CCCccccCCCCceeeeHHHHHHhhcCCCC----C------HH---HHhccc---chhhccc---CCCc-cc
Q 048360 61 HSNGPE---NEPIEIDFMPPFRKLDMIAEMERPANICM----P------KI---FLLMLL---PKLSTDH---MSPL-AK 117 (199)
Q Consensus 61 ~~~~~~---~~~~~~~~~~p~~rity~ea~~~~~G~~~----~------~~---~L~~li---p~fv~dy---~~pl-ak 117 (199)
..+... ......++..||+|+||.||++.+.+.+. . .. .|.+.+ |+||+|| ++|| +|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~p~fi~~~P~~~~pfy~~ 228 (322)
T cd00776 149 AKELELVNQLNRELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEIKPFYMK 228 (322)
T ss_pred HHHHhhhhccCcccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHHhCCCcEEEECCccccCCceee
Confidence 000000 01122345679999999999987755432 1 11 344443 9999999 8999 67
Q ss_pred ccCCCCceeEEEEEeecc-hh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHh
Q 048360 118 GHRSKPGLTLRLELFVNK-RE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVT 177 (199)
Q Consensus 118 ~~~~~p~~~~rFel~i~G-~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~ 177 (199)
++++||++++|||||++| .| .++.|.++ .++ +|||+|++|||||| |||||+|||+ +++
T Consensus 229 ~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~-~~~-~~yl~a~~~G~pp~~G~giGidRL~m~~~ 306 (322)
T cd00776 229 PDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDP-ESF-EWYLDLRKYGMPPHGGFGLGLERLVMWLL 306 (322)
T ss_pred ecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCCh-HHH-HHHHHHHHCCCCCCceeeEhHHHHHHHHc
Confidence 888899999999999999 88 22334322 223 89999999999999 9999999965 999
Q ss_pred CCCccceeee
Q 048360 178 ETKERHLVYA 187 (199)
Q Consensus 178 g~~~i~~v~~ 187 (199)
|.+||++|+|
T Consensus 307 g~~~Irdv~~ 316 (322)
T cd00776 307 GLDNIREAIL 316 (322)
T ss_pred CCCchheEee
Confidence 9999996654
No 16
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=5.1e-48 Score=360.22 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=140.1
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH--------------H----HHHHHHHhhHHHhc
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM--------------W----MVMELKGSCKIRYH 61 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm--------------~----l~~~i~~~~~~~~~ 61 (199)
.++||+||||||+|++ ++|++|||+|||+||||+++ +|||+|||| + |++.++..+.-.+.
T Consensus 370 ~~ayLtqS~QLylE~~-~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~ 448 (633)
T PLN02532 370 RPTYLTVSGRLHLESY-ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENCS 448 (633)
T ss_pred CCeeeccCHHHHHHHH-HHhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3799999999999996 46899999999999999996 899999999 1 12222221111111
Q ss_pred CCCCCC---------CCccccCCCCceeeeHHHHHHhhc---CC----------CCCHH---HHhcc-c--chhhccc--
Q 048360 62 SNGPEN---------EPIEIDFMPPFRKLDMIAEMERPA---NI----------CMPKI---FLLML-L--PKLSTDH-- 111 (199)
Q Consensus 62 ~~~~~~---------~~~~~~~~~p~~rity~ea~~~~~---G~----------~~~~~---~L~~l-i--p~fv~dy-- 111 (199)
.+.... ......++.||+||||.||++.+. |. |+..+ .|.+. + |+|||||
T Consensus 449 ~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~~~g~dL~~e~Er~L~~~~~~~PvFVtdyP~ 528 (633)
T PLN02532 449 EDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTTEHLSYLADEIYKKPVIIYNYPK 528 (633)
T ss_pred hhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcccccccCCccChHHHHHHHHHHcCCCEEEECCCh
Confidence 100000 011234567999999999997442 22 22222 44443 3 9999999
Q ss_pred -CCCcccccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHH
Q 048360 112 -MSPLAKGHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLID 171 (199)
Q Consensus 112 -~~plak~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGle 171 (199)
++||||..++|+++++||||+++|. | +++.|.++.. ++|||++++||+||| |||||||
T Consensus 529 ~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~--~ewYLdlrryG~pPHgGfGLG~E 606 (633)
T PLN02532 529 ELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQ--YEWYLDLRRHGTVKHSGFSLGFE 606 (633)
T ss_pred hhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhh--HHHHHHHHHcCCCCCeEEEEhHH
Confidence 9999887777889999999999965 4 3455654432 489999999999999 9999999
Q ss_pred HHH-HHhCCCccc--eeeecCCCccee
Q 048360 172 GVS-FVTETKERH--LVYARAHRGYAC 195 (199)
Q Consensus 172 Rl~-~l~g~~~i~--~v~~~~~~~~~~ 195 (199)
||+ |++|.+||| ..|||+++.+.|
T Consensus 607 RLvm~ltGl~nIRDvi~FPR~~g~~~~ 633 (633)
T PLN02532 607 LMVLFATGLPDVRDAIPFPRSWGKANN 633 (633)
T ss_pred HHHHHHhCCCchheEeecCCCcCcCCC
Confidence 965 999999999 557788877665
No 17
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-48 Score=346.04 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=141.1
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------------HHHHHHHHhhHHHhcC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------------WMVMELKGSCKIRYHS 62 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------------~l~~~i~~~~~~~~~~ 62 (199)
++||+||||||+|+++++ ++|||+|||+||||+++ +||++|||| ++++.++..+......
T Consensus 181 ~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~ 259 (435)
T COG0017 181 EAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECAD 259 (435)
T ss_pred ceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 689999999999998776 99999999999999985 899999999 2222333222111111
Q ss_pred CCCCCC--CccccC--CCCceeeeHHHHHHhhc---------CCCCCHH---HHhccc---chhhccc---CCCcc-ccc
Q 048360 63 NGPENE--PIEIDF--MPPFRKLDMIAEMERPA---------NICMPKI---FLLMLL---PKLSTDH---MSPLA-KGH 119 (199)
Q Consensus 63 ~~~~~~--~~~~~~--~~p~~rity~ea~~~~~---------G~~~~~~---~L~~li---p~fv~dy---~~pla-k~~ 119 (199)
+..... ...+.. +.||+||||+||++.+. |.|+..+ .|++-. |+||||| ++||| |++
T Consensus 260 el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~~e~~~~GdDl~~e~Er~l~e~~~~~~vfv~~yP~~~kpFYm~~~ 339 (435)
T COG0017 260 ELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKGFEKVEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEIKPFYMRPD 339 (435)
T ss_pred HHHHhhccchhhcccccCCccEEEHHHHHHHHHhcCCcccCCCCccCCHHHHHHHHHhCCCcEEEEeCcccccccccccC
Confidence 100000 112222 46899999999999765 4444433 555433 6999999 89995 678
Q ss_pred CCCCceeEEEEEeecc-hh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCC
Q 048360 120 RSKPGLTLRLELFVNK-RE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTET 179 (199)
Q Consensus 120 ~~~p~~~~rFel~i~G-~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~ 179 (199)
+++|+++++|||+++| .| +++.|.++.. . +|||++++||+||| |||||+|||+ +++|.
T Consensus 340 ~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~-~-~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl 417 (435)
T COG0017 340 PDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPES-Y-EWYLDLRKYGMPPHAGFGLGLERLVMYILGL 417 (435)
T ss_pred CCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHH-h-HHHHHHHHcCCCCCcccccCHHHHHHHHhCC
Confidence 8999999999999999 66 3456665432 2 89999999999999 9999999976 99999
Q ss_pred Cccce--eeecCCCcc
Q 048360 180 KERHL--VYARAHRGY 193 (199)
Q Consensus 180 ~~i~~--v~~~~~~~~ 193 (199)
+|||+ -|||.++..
T Consensus 418 ~nIRea~pFPR~~~r~ 433 (435)
T COG0017 418 DNIREAIPFPRDPGRL 433 (435)
T ss_pred CcceeccccCCCCCCC
Confidence 99995 467777653
No 18
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=1.2e-47 Score=354.68 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=141.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCC-CCCCchHHHH---H---------H-------HHHHHHhhHHHhc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM-DLTHLPELTM---W---------M-------VMELKGSCKIRYH 61 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~-~~rHl~EFtm---~---------l-------~~~i~~~~~~~~~ 61 (199)
++||+||||||||++++||++||||||||||||++ ++|||||||| + + +..++..+...+.
T Consensus 272 ~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~ 351 (530)
T PLN02850 272 PACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCK 351 (530)
T ss_pred ceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 68999999999999999999999999999999997 6999999999 1 1 1111111111111
Q ss_pred CCCCCC----CCccccCCCCceeeeHHHHHHhh--cCCCCCH------H---HHhccc------c-hhhccc---CCCc-
Q 048360 62 SNGPEN----EPIEIDFMPPFRKLDMIAEMERP--ANICMPK------I---FLLMLL------P-KLSTDH---MSPL- 115 (199)
Q Consensus 62 ~~~~~~----~~~~~~~~~p~~rity~ea~~~~--~G~~~~~------~---~L~~li------p-~fv~dy---~~pl- 115 (199)
.+.... ....+.+..+++|+||.||++.+ .|++.++ . .|++++ | +||+|| ++||
T Consensus 352 ~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g~~~~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY 431 (530)
T PLN02850 352 KELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFY 431 (530)
T ss_pred hhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcCCCCCCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchh
Confidence 110000 01112334478899999998754 4554332 1 454444 3 567889 8999
Q ss_pred ccccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HH
Q 048360 116 AKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FV 176 (199)
Q Consensus 116 ak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l 176 (199)
+|++++||++++|||||++|.| +++.|.++ .++ +|||+|++|||||| |||||||||+ ++
T Consensus 432 ~~~~~~d~~~~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~~g~d~-~~~-~~Yl~a~~~G~pPhgG~GiGlERLvM~l 509 (530)
T PLN02850 432 TMPCPDDPKYSNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDV-KTI-STYIDSFRYGAPPHGGFGVGLERVVMLF 509 (530)
T ss_pred ccccCCCCCeEEEEEEEeCCEEEeccceecCCHHHHHHHHHHcCCCh-HHH-HHHHHHHHcCCCCCceEEEcHHHHHHHH
Confidence 5889999999999999999999 34455543 245 89999999999999 9999999965 99
Q ss_pred hCCCccc--eeeecCCCcce
Q 048360 177 TETKERH--LVYARAHRGYA 194 (199)
Q Consensus 177 ~g~~~i~--~v~~~~~~~~~ 194 (199)
+|++||+ ..|||+++.+.
T Consensus 510 ~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 510 CGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred cCCCchheEeecCCCCCCCC
Confidence 9999999 66788888754
No 19
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=5.1e-47 Score=330.37 Aligned_cols=170 Identities=23% Similarity=0.231 Sum_probs=136.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPI 70 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~ 70 (199)
.+||+||||+++|+++++|++|||+||||||||++++||++|||| +++..+.+.+...+.
T Consensus 59 ~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~--------- 129 (306)
T PRK09350 59 TLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD--------- 129 (306)
T ss_pred ceEEecCHHHHHHHHhhccccceEEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHh---------
Confidence 579999999999999999999999999999999999999999999 222222222221111
Q ss_pred cccCCCCceeeeHHHHHHhhcCCCCCH-------------------------HHHh-----ccc--------chhhccc-
Q 048360 71 EIDFMPPFRKLDMIAEMERPANICMPK-------------------------IFLL-----MLL--------PKLSTDH- 111 (199)
Q Consensus 71 ~~~~~~p~~rity~ea~~~~~G~~~~~-------------------------~~L~-----~li--------p~fv~dy- 111 (199)
..||+++||.||+++++|+++.. +.+. .++ |+||+||
T Consensus 130 ----~~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP 205 (306)
T PRK09350 130 ----CEPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFP 205 (306)
T ss_pred ----cCCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCc
Confidence 25899999999998777764321 0000 111 8999999
Q ss_pred --CCCcccccCCCCceeEEEEEeecchh------------------------hhhcCCccccCCcHHHHHHHhcCCCCC-
Q 048360 112 --MSPLAKGHRSKPGLTLRLELFVNKRE------------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS- 164 (199)
Q Consensus 112 --~~plak~~~~~p~~~~rFel~i~G~E------------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh- 164 (199)
++||||++++||++++|||||++|+| +++.|. +..++|++||+|++||||||
T Consensus 206 ~~~~~~a~~~~~~~~~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~-~~~~~d~~~l~a~~~G~pp~~ 284 (306)
T PRK09350 206 ASQAALAKISTEDHRVAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGL-PQQPIDENLIAALEAGLPDCS 284 (306)
T ss_pred cccCccccccCCCCCeeEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCC-CcccCcHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999 112344 45678999999999999999
Q ss_pred cceecHHHHH-HHhCCCcccee
Q 048360 165 YFATLIDGVS-FVTETKERHLV 185 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v 185 (199)
|||||+|||+ +++|++||++|
T Consensus 285 G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 285 GVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred ceEecHHHHHHHHcCCCCcccC
Confidence 9999999966 99999999986
No 20
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=5.4e-48 Score=339.46 Aligned_cols=182 Identities=26% Similarity=0.347 Sum_probs=131.6
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCC-CCCCchHHHH-----------HHH-------HHHHHhhHHHhcC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM-DLTHLPELTM-----------WMV-------MELKGSCKIRYHS 62 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~-~~rHl~EFtm-----------~l~-------~~i~~~~~~~~~~ 62 (199)
++||+||||+|||+++++|++||||||||||||++ ++|||||||| +++ +.++..+......
T Consensus 74 ~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~ 153 (335)
T PF00152_consen 74 PAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKE 153 (335)
T ss_dssp EEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcc
Confidence 58999999999999999999999999999999999 7999999999 322 2222222100000
Q ss_pred CCCCCCCccccCCCCceeeeHHHHHHhhcCCC--CCH-----------------H---------HHhc-cc--chhhccc
Q 048360 63 NGPENEPIEIDFMPPFRKLDMIAEMERPANIC--MPK-----------------I---------FLLM-LL--PKLSTDH 111 (199)
Q Consensus 63 ~~~~~~~~~~~~~~p~~rity~ea~~~~~G~~--~~~-----------------~---------~L~~-li--p~fv~dy 111 (199)
. ...+++..||+|+||.||++++.+.+ +.. . .|.+ .. |+|||||
T Consensus 154 ----~-~~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p~fI~~~ 228 (335)
T PF00152_consen 154 ----L-SLNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDPVFITDY 228 (335)
T ss_dssp ----H-HTCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred ----c-cccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCcEEEEec
Confidence 0 01345667899999999999987654 221 0 1111 01 9999999
Q ss_pred ---CCCcccccCCCC-ceeEEEEEeecchh-----------------hhhcCC--ccccCCcHHHHHHHhcCCCCC-cce
Q 048360 112 ---MSPLAKGHRSKP-GLTLRLELFVNKRE-----------------DQQMGD--SEAMVIDGSFCTAHAKKQTIS-YFA 167 (199)
Q Consensus 112 ---~~plak~~~~~p-~~~~rFel~i~G~E-----------------~~~~g~--~~~~~~d~~yl~a~~~G~pPh-G~g 167 (199)
++|||+.+++++ ++++|||||++|.| .++.+. ++..++++|||+|+++||||| |||
T Consensus 229 P~~~~pf~~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~g 308 (335)
T PF00152_consen 229 PAEQSPFYKPPNDDDPGVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFG 308 (335)
T ss_dssp BGGGSTTTBBBSSSTTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEE
T ss_pred ccccCcccccccccccccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcce
Confidence 899998877665 99999999999999 122222 233456899999999999999 999
Q ss_pred ecHHHHH-HHhCCCccceeeec
Q 048360 168 TLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 168 iGleRl~-~l~g~~~i~~v~~~ 188 (199)
||+|||+ +++|.+||++|+|.
T Consensus 309 lG~eRLvm~l~g~~~Irdv~~F 330 (335)
T PF00152_consen 309 LGLERLVMLLLGLKNIRDVIPF 330 (335)
T ss_dssp EEHHHHHHHHHT-SSGGGGSSS
T ss_pred ehHHHHHHHHcCCCcHHheecC
Confidence 9999965 99999999966543
No 21
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=6.9e-47 Score=350.87 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=137.6
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCC-CCCCchHHHH--------------H----HHHHHHHhhHHHhc
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM-DLTHLPELTM--------------W----MVMELKGSCKIRYH 61 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~-~~rHl~EFtm--------------~----l~~~i~~~~~~~~~ 61 (199)
.++||+||||||+|++ ++|++|||||||+||||++ ++|||||||| + +++.++..+.-.+.
T Consensus 307 ~~ayLtqS~QLy~e~~-~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~ 385 (572)
T PLN02221 307 RQAFLTVSGQLQVETY-ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCF 385 (572)
T ss_pred CCeeeccCHHHHHHHH-HHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3689999999999996 5679999999999999998 6999999999 1 12222222111110
Q ss_pred CCC------CCC---CCccccCCCCceeeeHHHHHHhh-----cCCCC----C--HH-------HHhcc-c--chhhccc
Q 048360 62 SNG------PEN---EPIEIDFMPPFRKLDMIAEMERP-----ANICM----P--KI-------FLLML-L--PKLSTDH 111 (199)
Q Consensus 62 ~~~------~~~---~~~~~~~~~p~~rity~ea~~~~-----~G~~~----~--~~-------~L~~l-i--p~fv~dy 111 (199)
.+. ... ......+..||+||||.||++.+ .|.++ . .+ .|.+. + |+|||||
T Consensus 386 ~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dy 465 (572)
T PLN02221 386 DDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNY 465 (572)
T ss_pred HHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcCCcEEEEcC
Confidence 000 000 00111246799999999999854 24332 1 11 45554 3 9999999
Q ss_pred ---CCCcccccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceec
Q 048360 112 ---MSPLAKGHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATL 169 (199)
Q Consensus 112 ---~~plak~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giG 169 (199)
++||||..++|+.+++|||||++|. | +++.|.++ .++ +|||+|++|||||| |||||
T Consensus 466 P~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~-~~~-~~yLda~~~G~pPh~G~GlG 543 (572)
T PLN02221 466 PKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPI-EPY-EWYLDLRRYGTVKHCGFGLG 543 (572)
T ss_pred ChhhCcccccCCCCCceEEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCCh-hhh-HHHHHHhhCCCCCCceEEEe
Confidence 9999987777888999999999985 5 33455533 344 68999999999999 99999
Q ss_pred HHHHH-HHhCCCccce--eeecCCCcc
Q 048360 170 IDGVS-FVTETKERHL--VYARAHRGY 193 (199)
Q Consensus 170 leRl~-~l~g~~~i~~--v~~~~~~~~ 193 (199)
+|||+ +++|.+||++ .|||+++.+
T Consensus 544 iERLvm~l~g~~nIRdvi~FPR~~~~~ 570 (572)
T PLN02221 544 FERMILFATGIDNIRDVIPFPRYPGKA 570 (572)
T ss_pred HHHHHHHHcCCCchheEeecCCCcCcC
Confidence 99965 9999999994 567777654
No 22
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=2.8e-46 Score=320.48 Aligned_cols=174 Identities=28% Similarity=0.329 Sum_probs=133.5
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHH---HHHHHhhHHHhcCC-CCC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMV---MELKGSCKIRYHSN-GPE 66 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~---~~i~~~~~~~~~~~-~~~ 66 (199)
++||+||||+|||+++++|++|||+||||||+|+.+++|++|||| +++ ++++..+....... ..+
T Consensus 50 ~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~ 129 (269)
T cd00669 50 DYYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVT 129 (269)
T ss_pred cEEeecCHHHHHHHHHhcCCCcEEEEecceeCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 689999999999999999999999999999999888999999999 222 22222111101110 001
Q ss_pred CCCccccCCCCceeeeHHHHHHhhcCCCCCHHHHhcccchhhccc---CCCc-ccccCCCCceeEEEEEeecchh-----
Q 048360 67 NEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLLPKLSTDH---MSPL-AKGHRSKPGLTLRLELFVNKRE----- 137 (199)
Q Consensus 67 ~~~~~~~~~~p~~rity~ea~~~~~G~~~~~~~L~~lip~fv~dy---~~pl-ak~~~~~p~~~~rFel~i~G~E----- 137 (199)
......+++.||+|+||.||++.+.+ |+||+|| ++|| +|+++++|++++|||||++|+|
T Consensus 130 ~~~~~~~~~~~~~rit~~ea~~~~~~------------p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~Ei~~G~ 197 (269)
T cd00669 130 YGFELEDFGLPFPRLTYREALERYGQ------------PLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNGS 197 (269)
T ss_pred ccccccccCCCceEeeHHHHHHHhCC------------ceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCEEEeeCc
Confidence 11122356789999999999998741 8999999 4666 7888889999999999999999
Q ss_pred ------------hhhcCCccc--cCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeee
Q 048360 138 ------------DQQMGDSEA--MVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 138 ------------~~~~g~~~~--~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
.++.+.++. .+.++|||+|++||+||| |||||+|||+ +++|++||++|.+
T Consensus 198 ~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~ 263 (269)
T cd00669 198 SRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIA 263 (269)
T ss_pred hhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHccc
Confidence 223343332 336799999999999999 9999999965 9999999996654
No 23
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-46 Score=345.47 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=138.7
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------HH---HHHHHHhhHHHhcCCC
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------WM---VMELKGSCKIRYHSNG 64 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------~l---~~~i~~~~~~~~~~~~ 64 (199)
.++||+||||||||++++||++||||||||||||+++ +|||||||| ++ +++++..+........
T Consensus 259 ~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~ 338 (550)
T PTZ00401 259 RFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT 338 (550)
T ss_pred CCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc
Confidence 3689999999999999999999999999999999996 899999999 11 1122111110000000
Q ss_pred CC---C------CC------------ccc------------------cCCCCceeeeHHHHHHhh--cC-C------CCC
Q 048360 65 PE---N------EP------------IEI------------------DFMPPFRKLDMIAEMERP--AN-I------CMP 96 (199)
Q Consensus 65 ~~---~------~~------------~~~------------------~~~~p~~rity~ea~~~~--~G-~------~~~ 96 (199)
.+ . .. ..+ ++..||+|+||.||++.+ .| . |+.
T Consensus 339 ~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~rl~y~eai~lL~~~~~~~~~~~~dl~ 418 (550)
T PTZ00401 339 KELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSRMLRINYMHCIELLNTVLEEKMAPTDDIN 418 (550)
T ss_pred hhhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHhcCCCcccccHHHHHHHHHHhcccCCCcccccC
Confidence 00 0 00 000 013369999999999854 22 2 222
Q ss_pred HH---HHhccc------chhhcc-c---CCCc-ccccCCCCceeEEEEEeecchh-----------------hhhcCCcc
Q 048360 97 KI---FLLMLL------PKLSTD-H---MSPL-AKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSE 145 (199)
Q Consensus 97 ~~---~L~~li------p~fv~d-y---~~pl-ak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~ 145 (199)
.. .|++++ |+||+| | ++|| +|++++||++++|||||++|.| +++.|.++
T Consensus 419 ~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~ 498 (550)
T PTZ00401 419 TTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDL 498 (550)
T ss_pred chHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCc
Confidence 11 454444 899998 9 8998 5899999999999999999998 34556543
Q ss_pred ccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccc--eeeecCCCcc
Q 048360 146 AMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERH--LVYARAHRGY 193 (199)
Q Consensus 146 ~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~--~v~~~~~~~~ 193 (199)
.++ +|||+|++|||||| |||||||||+ +++|++||+ ..|||+++..
T Consensus 499 -~~~-~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl 548 (550)
T PTZ00401 499 -TPI-KEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRT 548 (550)
T ss_pred -hhh-HHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCC
Confidence 233 79999999999999 9999999965 999999999 5678888754
No 24
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=3e-46 Score=340.40 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=136.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------H-------HHHHHHHhhHHHhcC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------W-------MVMELKGSCKIRYHS 62 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~-------l~~~i~~~~~~~~~~ 62 (199)
++||+||||||||++ ++|++||||||||||||+++ +|||||||| + +++.++..+.-.+..
T Consensus 192 ~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~ 270 (453)
T TIGR00457 192 EAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQ 270 (453)
T ss_pred ccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 689999999999975 68999999999999999997 799999999 1 122222211111100
Q ss_pred C----CCCCCC-----ccccCCCCceeeeHHHHHHhhc--C----------CCCCHH---HHhccc---chhhccc---C
Q 048360 63 N----GPENEP-----IEIDFMPPFRKLDMIAEMERPA--N----------ICMPKI---FLLMLL---PKLSTDH---M 112 (199)
Q Consensus 63 ~----~~~~~~-----~~~~~~~p~~rity~ea~~~~~--G----------~~~~~~---~L~~li---p~fv~dy---~ 112 (199)
+ ...... ..-....||+|+||.||++.+. | .++..+ .|.+.. |+||||| +
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~~p~fIt~~P~~~ 350 (453)
T TIGR00457 271 ELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKPPVFVTNYPKDI 350 (453)
T ss_pred HHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCCCCEEEECCCccc
Confidence 0 000000 0001245899999999998442 2 222222 444432 9999999 9
Q ss_pred CCcccccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHH
Q 048360 113 SPLAKGHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGV 173 (199)
Q Consensus 113 ~plak~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl 173 (199)
+|||+..++||++++|||||++|+ | +++.|.++. .+ +|||+|++|||||| |||||+|||
T Consensus 351 ~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~-~~-~~Yl~~~~~G~pPhgG~GiGieRl 428 (453)
T TIGR00457 351 KAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTD-AL-NWYLDLRKYGSVPHSGFGLGFERL 428 (453)
T ss_pred ChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHH-HH-HHHHHHHHcCCCCCCcEeehHHHH
Confidence 999854448999999999999996 7 223343322 12 57999999999999 999999996
Q ss_pred H-HHhCCCccc--eeeecCCCccee
Q 048360 174 S-FVTETKERH--LVYARAHRGYAC 195 (199)
Q Consensus 174 ~-~l~g~~~i~--~v~~~~~~~~~~ 195 (199)
+ +++|.+||+ ..|||+++.+.|
T Consensus 429 vm~l~g~~~Irdv~~FPr~~~~~~p 453 (453)
T TIGR00457 429 LAYITGLENIRDAIPFPRTPGNINF 453 (453)
T ss_pred HHHHhCCCcHhhhccCcCCCCCCCC
Confidence 5 999999999 668888887654
No 25
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=5.5e-46 Score=344.83 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=137.5
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------HH---HHHHHHhhHHH-hc---C
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------WM---VMELKGSCKIR-YH---S 62 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~l---~~~i~~~~~~~-~~---~ 62 (199)
++||+||||||+|++ ++|++|||+||||||||+++ +||++|||| ++ +++++..+... .. .
T Consensus 325 ~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~ 403 (586)
T PTZ00425 325 QAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFD 403 (586)
T ss_pred ceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 689999999999985 68899999999999999985 999999999 22 22222211110 11 1
Q ss_pred CCCCCC-Cccc--------cCCCCceeeeHHHHHHhhc------------CCCCCHH---HHhccc---chhhccc---C
Q 048360 63 NGPENE-PIEI--------DFMPPFRKLDMIAEMERPA------------NICMPKI---FLLMLL---PKLSTDH---M 112 (199)
Q Consensus 63 ~~~~~~-~~~~--------~~~~p~~rity~ea~~~~~------------G~~~~~~---~L~~li---p~fv~dy---~ 112 (199)
+..... .... .+..||+||||+||++.+. |.++..+ +|.+.+ |+||||| +
T Consensus 404 ~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~~PvFItdyP~~~ 483 (586)
T PTZ00425 404 DIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKKPVIVYNYPKDL 483 (586)
T ss_pred ccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcCCcEEEECCcccc
Confidence 100000 0001 1356999999999997541 2233322 555543 9999999 9
Q ss_pred CCcccccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHH
Q 048360 113 SPLAKGHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGV 173 (199)
Q Consensus 113 ~plak~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl 173 (199)
+|||+..++|+.++++|||+++|. | +++.|.++. . .+|||++++|||||| |||||+|||
T Consensus 484 kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e-~-~~wYLd~rryG~pPhgGfGLGiERL 561 (586)
T PTZ00425 484 KAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNME-S-YWWYRQLRKFGSHPHAGFGLGFERL 561 (586)
T ss_pred CccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChh-H-HHHHHHHhhCCCCCCceEEEcHHHH
Confidence 999875555668899999999985 6 234444322 1 289999999999999 999999996
Q ss_pred H-HHhCCCccc--eeeecCCCccee
Q 048360 174 S-FVTETKERH--LVYARAHRGYAC 195 (199)
Q Consensus 174 ~-~l~g~~~i~--~v~~~~~~~~~~ 195 (199)
+ +++|.+||| ..|||+++.+.|
T Consensus 562 vm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 562 IMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred HHHHcCCCchheEEECcCCCCcCCC
Confidence 5 999999999 567888888765
No 26
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.8e-46 Score=339.63 Aligned_cols=190 Identities=14% Similarity=0.171 Sum_probs=135.8
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCC-CCCCchHHHH-----------HH-------HHHHHHhhHH----
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM-DLTHLPELTM-----------WM-------VMELKGSCKI---- 58 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~-~~rHl~EFtm-----------~l-------~~~i~~~~~~---- 58 (199)
++||+||||||||++ ++|++||||||||||||++ ++|||||||| ++ ++.+...+..
T Consensus 189 ~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~ 267 (450)
T PRK03932 189 EAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPD 267 (450)
T ss_pred CcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 679999999999885 6899999999999999998 5899999999 12 2222221110
Q ss_pred --HhcCCCCCCCCc-cc-c-CCCCceeeeHHHHHHhh--cCCC----------CCHH---HHhc-cc--chhhccc---C
Q 048360 59 --RYHSNGPENEPI-EI-D-FMPPFRKLDMIAEMERP--ANIC----------MPKI---FLLM-LL--PKLSTDH---M 112 (199)
Q Consensus 59 --~~~~~~~~~~~~-~~-~-~~~p~~rity~ea~~~~--~G~~----------~~~~---~L~~-li--p~fv~dy---~ 112 (199)
.+.......... .+ + ++.||+|+||.||++.+ .|.+ +..+ .|.+ .+ |+||||| +
T Consensus 268 ~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~pvfI~~yP~~~ 347 (450)
T PRK03932 268 DLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFKKPVFVTNYPKDI 347 (450)
T ss_pred HHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcCCcEEEECCCccc
Confidence 010000000000 01 1 35799999999999743 3432 2211 3444 33 9999999 9
Q ss_pred CCcc-cccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHH
Q 048360 113 SPLA-KGHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDG 172 (199)
Q Consensus 113 ~pla-k~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleR 172 (199)
+||| |+++++ ++++||||+++|. | +++.|.++. .. +||+++++|||||| ||||||||
T Consensus 348 ~pfy~~~~~~~-~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~-~~-~~yl~~~~~G~pP~gG~GiGidR 424 (450)
T PRK03932 348 KAFYMRLNPDG-KTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKE-DY-WWYLDLRRYGSVPHSGFGLGFER 424 (450)
T ss_pred CcccCcCCCCC-CEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHH-HH-HHHHHHHHcCCCCCCcEeehHHH
Confidence 9998 677777 9999999999995 6 234454332 23 68999999999999 99999999
Q ss_pred HH-HHhCCCccc--eeeecCCCccee
Q 048360 173 VS-FVTETKERH--LVYARAHRGYAC 195 (199)
Q Consensus 173 l~-~l~g~~~i~--~v~~~~~~~~~~ 195 (199)
|+ +++|++||+ ..|||.++.+.|
T Consensus 425 L~m~l~g~~nIrdv~~FPr~~~r~~p 450 (450)
T PRK03932 425 LVAYITGLDNIRDVIPFPRTPGRAEF 450 (450)
T ss_pred HHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 65 999999999 456788877654
No 27
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-46 Score=329.71 Aligned_cols=191 Identities=18% Similarity=0.234 Sum_probs=145.6
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------HH-------HHHHHHhhHHHh
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------WM-------VMELKGSCKIRY 60 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------~l-------~~~i~~~~~~~~ 60 (199)
.++||+||||||+||+|||+|+||||||||||||+|+ +||++||+. ++ +-.|+..+...|
T Consensus 274 ~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery 353 (533)
T KOG0556|consen 274 QKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERY 353 (533)
T ss_pred CcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999985 999999998 11 122333333333
Q ss_pred cCCCCCC----CCccccCCCCceeeeHHHHHH--hhcCCCCCHH---------HHhccc------chhhcc-c---CCCc
Q 048360 61 HSNGPEN----EPIEIDFMPPFRKLDMIAEME--RPANICMPKI---------FLLMLL------PKLSTD-H---MSPL 115 (199)
Q Consensus 61 ~~~~~~~----~~~~~~~~~p~~rity~ea~~--~~~G~~~~~~---------~L~~li------p~fv~d-y---~~pl 115 (199)
..+.... +.....+..|-.|+||.|+++ +.+|+.+.++ .|++++ -+||.| | ++||
T Consensus 354 ~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLreaGvE~g~~dDlsTe~Ek~LG~lV~eky~tdfyildkyP~avRPF 433 (533)
T KOG0556|consen 354 AKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLREAGVEMGDEDDLSTESEKKLGQLVREKYDTDFYILDKYPLAVRPF 433 (533)
T ss_pred HHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHHcCcccCCccccCChhHHHHHHHHHHHhCCcEEEEccCccccccc
Confidence 3221100 112334567788999999998 4578765431 777776 233333 6 8999
Q ss_pred -ccccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-H
Q 048360 116 -AKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-F 175 (199)
Q Consensus 116 -ak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~ 175 (199)
.|++++||.+++|||+|++|.| .++.|.++ ..+ ..|+++|+||+||| |+|||+||++ .
T Consensus 434 YTmpd~~~p~ySnSyD~fmRGeEIlSGAQRIhdpe~L~era~~hGid~-~~i-~~YidsFryG~PPHaGgGIGLERvvml 511 (533)
T KOG0556|consen 434 YTMPDPENPRYSNSYDFFMRGEEILSGAQRIHDPELLVERAKEHGIDP-SKI-STYIDSFRYGAPPHAGGGIGLERVVML 511 (533)
T ss_pred cccCCCCCCCcccchhheechhhhhccccccCCHHHHHHHHHHcCCCH-HHH-HHHHHHhccCCCCCCCCcccHHHHHHH
Confidence 5899999999999999999999 12334332 223 78999999999999 9999999976 8
Q ss_pred HhCCCccc--eeeecCCCcc
Q 048360 176 VTETKERH--LVYARAHRGY 193 (199)
Q Consensus 176 l~g~~~i~--~v~~~~~~~~ 193 (199)
.+|++||| +.|||+|.+.
T Consensus 512 yl~L~nIR~~SlFPRDPkRL 531 (533)
T KOG0556|consen 512 YLGLNNIRKTSLFPRDPKRL 531 (533)
T ss_pred HhcCCcchhhccCCCCcccc
Confidence 89999999 9999999864
No 28
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=3.6e-45 Score=339.26 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=137.5
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH--------------HHHHHHH----HhhHHHhcC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM--------------WMVMELK----GSCKIRYHS 62 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm--------------~l~~~i~----~~~~~~~~~ 62 (199)
++||+||||||+|+ +++|++|||+||||||||+++ +|||+|||| +++++++ ..+.-....
T Consensus 303 ~~~LtvS~QL~~E~-~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~ 381 (565)
T PLN02603 303 PAFLTVSGQLNGET-YATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKE 381 (565)
T ss_pred ceeeccCchHHHHH-HHhcccceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHh
Confidence 57999999999998 577999999999999999996 899999999 1222222 211101100
Q ss_pred CCCCC-C--Ccc-c-----cCCCCceeeeHHHHHHhh--c----------CCCCCHH---HHhccc----chhhccc---
Q 048360 63 NGPEN-E--PIE-I-----DFMPPFRKLDMIAEMERP--A----------NICMPKI---FLLMLL----PKLSTDH--- 111 (199)
Q Consensus 63 ~~~~~-~--~~~-~-----~~~~p~~rity~ea~~~~--~----------G~~~~~~---~L~~li----p~fv~dy--- 111 (199)
+.... . ... + .+..||+||||+||++.+ . |.++..+ .|.+.+ |+|||||
T Consensus 382 el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ 461 (565)
T PLN02603 382 DMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKE 461 (565)
T ss_pred HHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccc
Confidence 00000 0 000 0 134689999999999754 1 2222222 455433 9999999
Q ss_pred CCCcccccCCCCceeEEEEEeecch-h-----h------------hhcCCccccCCcHHHHHHHhcCCCCC-cceecHHH
Q 048360 112 MSPLAKGHRSKPGLTLRLELFVNKR-E-----D------------QQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDG 172 (199)
Q Consensus 112 ~~plak~~~~~p~~~~rFel~i~G~-E-----~------------~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleR 172 (199)
++||||..++|++++++|||+++|. | + ++.|.++. .. +|||++++||+||| ||||||||
T Consensus 462 ikpFYm~~~~d~~~v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e-~y-~wYLdl~r~G~pPhgGfGlG~ER 539 (565)
T PLN02603 462 IKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKE-SY-WWYLDLRRYGSVPHAGFGLGFER 539 (565)
T ss_pred cCccccccCCCCCeeEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHH-HH-HHHHHHHhccCCCCceeEEcHHH
Confidence 9999998888899999999999886 5 1 22222111 11 78999999999999 99999999
Q ss_pred HH-HHhCCCccc--eeeecCCCccee
Q 048360 173 VS-FVTETKERH--LVYARAHRGYAC 195 (199)
Q Consensus 173 l~-~l~g~~~i~--~v~~~~~~~~~~ 195 (199)
|+ +++|++||| ..|||+++.+.|
T Consensus 540 Lvm~ltg~~nIRdvi~FPR~~g~~~~ 565 (565)
T PLN02603 540 LVQFATGIDNIRDAIPFPRVPGSAEF 565 (565)
T ss_pred HHHHHhCCCchhheeeccCCCCCCCC
Confidence 65 999999999 668899998877
No 29
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-44 Score=303.17 Aligned_cols=175 Identities=25% Similarity=0.299 Sum_probs=146.7
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCC
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEP 69 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~ 69 (199)
.++||++|||++||+|+++|-++|||||+||||++.+++||||||| .+++++...+.....
T Consensus 69 ~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~-------- 140 (322)
T COG2269 69 KPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE-------- 140 (322)
T ss_pred ceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHc--------
Confidence 3689999999999999999999999999999999999999999999 566666555544332
Q ss_pred ccccCCCCceeeeHHHHHHhhcCCCCCH-H----------------------HHhcc-----c--------chhhccc--
Q 048360 70 IEIDFMPPFRKLDMIAEMERPANICMPK-I----------------------FLLML-----L--------PKLSTDH-- 111 (199)
Q Consensus 70 ~~~~~~~p~~rity~ea~~~~~G~~~~~-~----------------------~L~~l-----i--------p~fv~dy-- 111 (199)
..++.++||.||+.+++|+|+.. + .|.++ + |+||+||
T Consensus 141 -----~~~~E~ls~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~ 215 (322)
T COG2269 141 -----CVEAERLSYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPA 215 (322)
T ss_pred -----cCCcceeeHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcH
Confidence 23589999999999999998753 1 11111 1 9999999
Q ss_pred -CCCcccccCCCCceeEEEEEeecchh-----------------------hh-hcCCccccCCcHHHHHHHhcCCCCC-c
Q 048360 112 -MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQ-QMGDSEAMVIDGSFCTAHAKKQTIS-Y 165 (199)
Q Consensus 112 -~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~-~~g~~~~~~~d~~yl~a~~~G~pPh-G 165 (199)
+++||+++++||.+++|||||++|+| .| ..+. +.+|+|++||.|++. |||| |
T Consensus 216 ~qaaLA~i~~~D~rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l-~~~piDe~fl~Ala~-mP~cSG 293 (322)
T COG2269 216 SQAALAQISTGDPRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGL-PQYPIDEDFLAALAR-MPPCSG 293 (322)
T ss_pred HHHHhhccCCCCcchhhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHh-CCCccc
Confidence 89999999999999999999999999 11 2233 678999999999999 9999 9
Q ss_pred ceecHHHHH-HHhCCCccceeeecCC
Q 048360 166 FATLIDGVS-FVTETKERHLVYARAH 190 (199)
Q Consensus 166 ~giGleRl~-~l~g~~~i~~v~~~~~ 190 (199)
+++|+|||+ .++|.++|++|+....
T Consensus 294 vALG~DRLvmLalg~~~i~~Vi~f~v 319 (322)
T COG2269 294 VALGFDRLVMLALGAESIDDVIAFPV 319 (322)
T ss_pred ceecHHHHHHHHcCcchHHHHhhccc
Confidence 999999976 7889999998886543
No 30
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=5.9e-42 Score=295.29 Aligned_cols=179 Identities=20% Similarity=0.206 Sum_probs=123.6
Q ss_pred eeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCcc
Q 048360 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPIE 71 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~~ 71 (199)
.||+||||||||+|+++|++|||+||||||||+++++|++|||| +++..+-+.+....... ..
T Consensus 51 ~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~------~~ 124 (280)
T cd00777 51 YALPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEV------LG 124 (280)
T ss_pred eecccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHH------hC
Confidence 35999999999999999999999999999999998666679999 23322222221111100 00
Q ss_pred ccCCCCceeeeHHHHHHhhc-----CCCCCH--HHHhcccchhhcc-c------CCCcccccCCCCceeEEEEEeecchh
Q 048360 72 IDFMPPFRKLDMIAEMERPA-----NICMPK--IFLLMLLPKLSTD-H------MSPLAKGHRSKPGLTLRLELFVNKRE 137 (199)
Q Consensus 72 ~~~~~p~~rity~ea~~~~~-----G~~~~~--~~L~~lip~fv~d-y------~~plak~~~~~p~~~~rFel~i~G~E 137 (199)
.++..||+|+||.||++++. +.|++. ..+..--++++++ | ..|+++.++++ ++++|||||++|+|
T Consensus 125 ~~~~~p~~rity~eA~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~-~~~~~fdl~~~G~E 203 (280)
T cd00777 125 VELTTPFPRMTYAEAMERYGFKFLWIVDFPLFEWDEEEGRLVSAHHPFTAPKEEDLDLLEKDPED-ARAQAYDLVLNGVE 203 (280)
T ss_pred CCCCCCCceeeHHHHHHHhCCCCccccCCcccCChhHHHHHHHHhCCCcCCCcccchhhhcCCcc-CeeEEEEEEeCCEE
Confidence 13467999999999999762 222210 0000000455555 4 12355556666 79999999999999
Q ss_pred -----------------hhhcCCcc--ccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 138 -----------------DQQMGDSE--AMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 138 -----------------~~~~g~~~--~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
.++.+.+. ....++|||+|++|||||| |||||+|||+ +++|++||++|+|.
T Consensus 204 i~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~F 275 (280)
T cd00777 204 LGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAF 275 (280)
T ss_pred EccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeec
Confidence 12333321 1223489999999999999 9999999965 99999999987764
No 31
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=3.1e-42 Score=320.67 Aligned_cols=183 Identities=22% Similarity=0.243 Sum_probs=134.2
Q ss_pred ee-eecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCc
Q 048360 3 LY-MRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPI 70 (199)
Q Consensus 3 ~y-L~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~ 70 (199)
.| |+||||||||+|++||++||||||||||||+++++|+||||| +++..+-+.+...+... .
T Consensus 187 ~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v------~ 260 (583)
T TIGR00459 187 FYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEV------K 260 (583)
T ss_pred eeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHHHHHHHHHHHHHHHH------h
Confidence 45 999999999999999999999999999999998666699999 22222212222111110 1
Q ss_pred cccCCCCceeeeHHHHHHhhcCCC----------------------------------------------CCH-H-----
Q 048360 71 EIDFMPPFRKLDMIAEMERPANIC----------------------------------------------MPK-I----- 98 (199)
Q Consensus 71 ~~~~~~p~~rity~ea~~~~~G~~----------------------------------------------~~~-~----- 98 (199)
.+++..||+|+||.||++++ |.| +.. +
T Consensus 261 ~~~~~~pf~r~ty~ea~~~y-GsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~ 339 (583)
T TIGR00459 261 GIDLKKPFPVMTYAEAMERY-GSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELR 339 (583)
T ss_pred CCCCCCCceEEEHHHHHHHH-CCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHH
Confidence 24567899999999999987 322 000 0
Q ss_pred -------------------H------------------------------------------Hh----------ccc---
Q 048360 99 -------------------F------------------------------------------LL----------MLL--- 104 (199)
Q Consensus 99 -------------------~------------------------------------------L~----------~li--- 104 (199)
. |+ +++
T Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~ 419 (583)
T TIGR00459 340 KFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPD 419 (583)
T ss_pred HHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCC
Confidence 0 00 011
Q ss_pred ---chhhccc-C-------------CCcccccCCCCc---------eeEEEEEeecchh------------h-----hhc
Q 048360 105 ---PKLSTDH-M-------------SPLAKGHRSKPG---------LTLRLELFVNKRE------------D-----QQM 141 (199)
Q Consensus 105 ---p~fv~dy-~-------------~plak~~~~~p~---------~~~rFel~i~G~E------------~-----~~~ 141 (199)
|++|||| + .||++++++|+. .+++|||++||.| + +..
T Consensus 420 ~~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l 499 (583)
T TIGR00459 420 LFSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEIL 499 (583)
T ss_pred CceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEeceEecceeEEeCCHHHHHHHHHHc
Confidence 8899999 4 599999888877 8999999999999 1 122
Q ss_pred --CCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeee--cCCCc
Q 048360 142 --GDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYA--RAHRG 192 (199)
Q Consensus 142 --g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~--~~~~~ 192 (199)
+++++...+.+||+||+||+||| |+|+|+|||+ +|+|++|||+||+ +..+|
T Consensus 500 ~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~g 556 (583)
T TIGR00459 500 GIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAA 556 (583)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCCC
Confidence 22333445789999999999999 9999999976 9999999997664 44443
No 32
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-40 Score=290.60 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=133.6
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH---HH--HH------HHHHh-hH--HHh--cCCC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM---WM--VM------ELKGS-CK--IRY--HSNG 64 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm---~l--~~------~i~~~-~~--~~~--~~~~ 64 (199)
++||++|.|||++. ++.++.|||.+||+||||+++ +|||.|||| ++ +. ...+. ++ +++ ....
T Consensus 187 p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~ 265 (446)
T KOG0554|consen 187 PAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCI 265 (446)
T ss_pred ceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 68999999999998 578899999999999999985 999999999 11 11 11111 10 111 1100
Q ss_pred C--CC----------CCccccCCCCceeeeHHHHHHhh--c-----------CCCCCHH---HHhccc---chhhccc--
Q 048360 65 P--EN----------EPIEIDFMPPFRKLDMIAEMERP--A-----------NICMPKI---FLLMLL---PKLSTDH-- 111 (199)
Q Consensus 65 ~--~~----------~~~~~~~~~p~~rity~ea~~~~--~-----------G~~~~~~---~L~~li---p~fv~dy-- 111 (199)
. +. .+....+..+|.++||+||++.+ + |+++..+ +|.+.. |+||+||
T Consensus 266 edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~~~~PVfV~dYP~ 345 (446)
T KOG0554|consen 266 EDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVEECFKKPVFVTDYPK 345 (446)
T ss_pred chhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcccccccCcccccccchhhHHHHHHHhcCCCEEEEeccc
Confidence 0 00 01111234568899999999854 2 3333333 555544 9999999
Q ss_pred -CCCcccccCCCCceeEEEEEeecchh------h--------hhcCCccccCCcHHHHHHHhcCCCCC-cceecHHH-HH
Q 048360 112 -MSPLAKGHRSKPGLTLRLELFVNKRE------D--------QQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDG-VS 174 (199)
Q Consensus 112 -~~plak~~~~~p~~~~rFel~i~G~E------~--------~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleR-l~ 174 (199)
++||||..++++..+.+|||+++|+. + ++.|..+ ..+ +||||.++||.+|| |||||+|| |.
T Consensus 346 ~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~~~~l~e~g~~~-~~~-eWYldLRryG~vphgGFGlGfER~lq 423 (446)
T KOG0554|consen 346 GIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREERKARLKERGLTR-EEL-EWYLDLRRYGSVPHGGFGLGFERMLQ 423 (446)
T ss_pred cccceEEEecCCCCeeEEEEeecccchhhcCcccchhhHHHHHhcCCCc-ccc-ceehhhhhcCCCCCCcccccHHHHHH
Confidence 99998877777678899999999986 2 2333322 223 79999999999999 99999999 55
Q ss_pred HHhCCCccceeeecC
Q 048360 175 FVTETKERHLVYARA 189 (199)
Q Consensus 175 ~l~g~~~i~~v~~~~ 189 (199)
+++|.+||++|||+-
T Consensus 424 ~~tG~~nIkd~IPFp 438 (446)
T KOG0554|consen 424 YLTGNDNIKDVIPFP 438 (446)
T ss_pred HHhCCcchhhceecC
Confidence 999999999998863
No 33
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.5e-35 Score=277.63 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=59.3
Q ss_pred eeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCcc
Q 048360 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPIE 71 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~~ 71 (199)
.||+||||||||+||++|++||||||||||||+++++|+||||| +++..+-+.+...+... ..
T Consensus 254 y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~------~~ 327 (652)
T PLN02903 254 YALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEI------KG 327 (652)
T ss_pred cccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecCCCHHHHHHHHHHHHHHHHHHH------hC
Confidence 36999999999999999999999999999999998666699999 22222211121111100 12
Q ss_pred ccCCCCceeeeHHHHHHhh
Q 048360 72 IDFMPPFRKLDMIAEMERP 90 (199)
Q Consensus 72 ~~~~~p~~rity~ea~~~~ 90 (199)
+++..||+|+||.||++++
T Consensus 328 ~~~~~PF~rity~eA~~~y 346 (652)
T PLN02903 328 VQLPNPFPRLTYAEAMSKY 346 (652)
T ss_pred CCCCCCceEEEHHHHHHHH
Confidence 3455689999999998876
No 34
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.2e-35 Score=274.81 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=57.8
Q ss_pred eeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCcc
Q 048360 3 LYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPIE 71 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~~ 71 (199)
.||+||||+|||+|+++|++||||||||||||+++.+|+||||| +++..+-+.+...+... ..
T Consensus 191 ~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~------~~ 264 (588)
T PRK00476 191 YALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEV------LG 264 (588)
T ss_pred eecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHHHHHHHHHHHHHHHH------hC
Confidence 46999999999999999999999999999999986444559999 22222211121111100 11
Q ss_pred ccCCCCceeeeHHHHHHhh
Q 048360 72 IDFMPPFRKLDMIAEMERP 90 (199)
Q Consensus 72 ~~~~~p~~rity~ea~~~~ 90 (199)
.++..||+|+||.||++++
T Consensus 265 ~~~~~pf~r~ty~ea~~~y 283 (588)
T PRK00476 265 VDLPTPFPRMTYAEAMRRY 283 (588)
T ss_pred ccCCCCceEEEHHHHHHHH
Confidence 2446789999999988766
No 35
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=6.6e-35 Score=275.60 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=59.2
Q ss_pred eeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCccc
Q 048360 4 YMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPIEI 72 (199)
Q Consensus 4 yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~~~ 72 (199)
+|+||||||||+|+++|++||||||||||||+++++|+||||| +++..+-+.+...+.. ..+
T Consensus 207 ~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~~dvm~l~E~li~~v~~~-------~~~ 279 (706)
T PRK12820 207 ALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEELTARMFAI-------GGI 279 (706)
T ss_pred ecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccceeeccCCHHHHHHHHHHHHHHHHHh-------cCc
Confidence 3999999999999999999999999999999998666799999 2222111111111110 123
Q ss_pred cCCCCceeeeHHHHHHhh
Q 048360 73 DFMPPFRKLDMIAEMERP 90 (199)
Q Consensus 73 ~~~~p~~rity~ea~~~~ 90 (199)
++..||+|+||.||+++|
T Consensus 280 ~~~~pf~r~ty~eA~~~y 297 (706)
T PRK12820 280 ALPRPFPRMPYAEAMDTT 297 (706)
T ss_pred CCCCCceEEEHHHHHHHh
Confidence 456799999999998876
No 36
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-33 Score=254.84 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=63.2
Q ss_pred eecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH----------HHHHHHHHhh-HHHhcCCCCCCCCcccc
Q 048360 5 MRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM----------WMVMELKGSC-KIRYHSNGPENEPIEID 73 (199)
Q Consensus 5 L~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm----------~l~~~i~~~~-~~~~~~~~~~~~~~~~~ 73 (199)
|.||||||||.||+|||+|.|||++|||+|+.....+||||+ +-++++.+.+ ...+.. ...++
T Consensus 193 LPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~------~~~i~ 266 (585)
T COG0173 193 LPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKE------VKGIE 266 (585)
T ss_pred cCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCHHHHHHHHHHHHHHHHHH------hcCCc
Confidence 889999999999999999999999999999998777799999 2344444432 112211 12356
Q ss_pred CCCCceeeeHHHHHHhh
Q 048360 74 FMPPFRKLDMIAEMERP 90 (199)
Q Consensus 74 ~~~p~~rity~ea~~~~ 90 (199)
+..||+||||.||+++|
T Consensus 267 l~~pFprmtY~eAm~~Y 283 (585)
T COG0173 267 LKTPFPRMTYAEAMRRY 283 (585)
T ss_pred cCCCcccccHHHHHHHh
Confidence 77899999999999987
No 37
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.9e-32 Score=237.62 Aligned_cols=191 Identities=15% Similarity=0.197 Sum_probs=138.7
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCC-CCCCchHHHH-----------HHHHHHHH----hhHHHhcCCC
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM-DLTHLPELTM-----------WMVMELKG----SCKIRYHSNG 64 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~-~~rHl~EFtm-----------~l~~~i~~----~~~~~~~~~~ 64 (199)
.+|||+||+|||++.++. .+++||.|.+.||||.| ++||++|||. +|+..|-. ++...+..-.
T Consensus 289 EeAyLTQSSQLYLEtclp-Algdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~ 367 (545)
T KOG0555|consen 289 EEAYLTQSSQLYLETCLP-ALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPI 367 (545)
T ss_pred chhhccchhHHHHHHhhh-hcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChh
Confidence 379999999999999866 49999999999999998 5999999999 33332211 1111121100
Q ss_pred C-CCCCcccc---CCCCceeeeHHHHHHhhc--CC------------CCCHH---HHhccc--chhhccc---CCCcc-c
Q 048360 65 P-ENEPIEID---FMPPFRKLDMIAEMERPA--NI------------CMPKI---FLLMLL--PKLSTDH---MSPLA-K 117 (199)
Q Consensus 65 ~-~~~~~~~~---~~~p~~rity~ea~~~~~--G~------------~~~~~---~L~~li--p~fv~dy---~~pla-k 117 (199)
. .....+.+ .+.||.|+.|.|||+.+. ++ |++.. .+.+.| |+|++.| +++|+ +
T Consensus 368 ~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg~PIfLtrFpveiKsFYM~ 447 (545)
T KOG0555|consen 368 APLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIGVPIFLTRFPVEIKSFYMK 447 (545)
T ss_pred hhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcCCceEEeeccccccceeee
Confidence 0 00011122 357899999999998543 22 22211 344455 9999999 99996 5
Q ss_pred ccCCCCceeEEEEEeecchh------h------------hhcCCccccCCcHHHHHHHhcCCCCC-cceecHHH-HHHHh
Q 048360 118 GHRSKPGLTLRLELFVNKRE------D------------QQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDG-VSFVT 177 (199)
Q Consensus 118 ~~~~~p~~~~rFel~i~G~E------~------------~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleR-l~~l~ 177 (199)
.+.+||++|+|.|++++|+. + +..|.++. +. .||+|-++||.-|| |+|+|+|| |+||+
T Consensus 448 rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~-pY-YWy~DqrkyGt~pHGGyGLGlERfL~wL~ 525 (545)
T KOG0555|consen 448 RCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPD-PY-YWYTDQRKYGTCPHGGYGLGLERFLAWLC 525 (545)
T ss_pred cccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCC-Cc-eEEeeccccccCCCCcccccHHHHHHHHh
Confidence 67899999999999999986 1 22333222 11 69999999999999 99999999 66999
Q ss_pred CCCccc--eeeecCCCcce
Q 048360 178 ETKERH--LVYARAHRGYA 194 (199)
Q Consensus 178 g~~~i~--~v~~~~~~~~~ 194 (199)
+-.+|+ -.+||-+.+|+
T Consensus 526 ~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 526 DRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred cccchhheeecchhhccCC
Confidence 999999 56899887764
No 38
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-30 Score=234.65 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=63.2
Q ss_pred eecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCcccc
Q 048360 5 MRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPIEID 73 (199)
Q Consensus 5 L~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~~~~ 73 (199)
|.||||.|+|+||+||++|.|||++|||+|+......||||+ ++++-|-+.+.-.+.. ...+.
T Consensus 231 LpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~dim~liEdll~~~ws~------~k~~~ 304 (628)
T KOG2411|consen 231 LPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSE------DKGIQ 304 (628)
T ss_pred cCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEeccCHHHHHHHHHHHHHHhchh------hcCCC
Confidence 789999999999999999999999999999999999999999 2233232333222211 12345
Q ss_pred CCCCceeeeHHHHHHhh
Q 048360 74 FMPPFRKLDMIAEMERP 90 (199)
Q Consensus 74 ~~~p~~rity~ea~~~~ 90 (199)
+..||+||||.||++.|
T Consensus 305 l~~PF~riTY~~Am~~Y 321 (628)
T KOG2411|consen 305 LPVPFPRITYADAMDKY 321 (628)
T ss_pred CCCCcccccHHHHHHHh
Confidence 67899999999999987
No 39
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=97.98 E-value=7e-06 Score=71.15 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCceeEEEEEeecchh---------hhhcCCccccCCcHHHHHHHhcC-CCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 122 KPGLTLRLELFVNKRE---------DQQMGDSEAMVIDGSFCTAHAKK-QTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 122 ~p~~~~rFel~i~G~E---------~~~~g~~~~~~~d~~yl~a~~~G-~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
+|-+-.+|||-=.|+- ++..|......+ .|++++.+| +||+ |+|||.|||+ .+++..+|.+|-+-
T Consensus 223 ~~~l~~a~ELSSmGiRVdee~L~~Ql~~~g~~dr~~l--~~h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 223 NPVLQRAFELSSMGIRVDEESLQKQLKLAGDEDRLEL--PFHKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred chhcCceeeecCcceEecHHHHHHHHHHcCCCccccC--HHHHHHHcCCCCccccccccHHHHHHHHhccchhcceeec
Confidence 3555667777666653 345554333444 469999999 9999 9999999977 88999999987653
No 40
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=97.86 E-value=1.6e-05 Score=69.58 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=46.4
Q ss_pred CCceeEEEEEeecchh---------hhhcCCccccCCcHHHHHHHhcC-CCCC-cceecHHHHH-HHhCCCccceeee
Q 048360 122 KPGLTLRLELFVNKRE---------DQQMGDSEAMVIDGSFCTAHAKK-QTIS-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 122 ~p~~~~rFel~i~G~E---------~~~~g~~~~~~~d~~yl~a~~~G-~pPh-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
+|-+-.+|||-=.|+- ++..|......+ .+|+++ ..| +||+ |+|||.|||+ .+++.++|.+|-+
T Consensus 233 ~~~l~~a~ELSSmGiRVd~e~L~~Qlk~~g~~dr~~l-~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 233 NPVLDDAFELSSMGIRVDEEALKRQLKLTGDEDRLEL-EWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred ccccCceeeecCcceEecHHHHHHHHHHcCCCccccC-HHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 3555667777666653 345554344455 568888 778 9999 9999999977 8899999997765
No 41
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=97.82 E-value=2.3e-05 Score=68.49 Aligned_cols=63 Identities=14% Similarity=-0.031 Sum_probs=44.6
Q ss_pred CceeEEEEEeecchh---------hhhcCCccccCCcHHHHHHHhcC-CCCC-cceecHHHHH-HHhCCCccceeee
Q 048360 123 PGLTLRLELFVNKRE---------DQQMGDSEAMVIDGSFCTAHAKK-QTIS-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 123 p~~~~rFel~i~G~E---------~~~~g~~~~~~~d~~yl~a~~~G-~pPh-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
|-+-.+|||=--|+- ++..|......+ .+|+++ ..| +||+ |+|||.|||+ .+++..+|.+|-+
T Consensus 241 ~vl~~a~ElSSMGIRVd~~~L~~Qlk~~g~~dr~~l-~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 241 PVLGDAFELSSMGIRVDEDALRHQLALTGDEDRLEL-EWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred hhcCceeeeecceeEECHHHHHHHHHHcCCCccccC-HHHHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 344456666555543 345564344455 578888 777 9999 9999999977 8899999997754
No 42
>PTZ00213 asparagine synthetase A; Provisional
Probab=97.74 E-value=3e-05 Score=68.08 Aligned_cols=63 Identities=13% Similarity=-0.083 Sum_probs=43.9
Q ss_pred CceeEEEEEeecchh---------hhhcCCccccCCcHHHHHHHhcC-CCCC-cceecHHHHH-HHhCCCccceeee
Q 048360 123 PGLTLRLELFVNKRE---------DQQMGDSEAMVIDGSFCTAHAKK-QTIS-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 123 p~~~~rFel~i~G~E---------~~~~g~~~~~~~d~~yl~a~~~G-~pPh-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
|-+-.++||-=.|+- ++..|......+ .+|++ +..| +||+ |+|||.|||+ .+++..+|.+|-+
T Consensus 260 ~~l~~a~ELSSmGiRVd~esL~~Qlk~~g~~dr~~l-~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 260 PVLDDVLELSSMGIRVDAEALRRQLEITNNTDRLKC-MWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred hhcCceeecCCcceEEcHHHHHHHHHHcCCCccccC-HHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 444456666555542 344554344455 46888 7777 9999 9999999977 8889999997754
No 43
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.28 E-value=0.0005 Score=63.45 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.7
Q ss_pred CceEEeccccccCC-CCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEG-MDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~-~~~rHl~EFtm 46 (199)
-|+|+||+|||+|. .+.+|+++|.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQ 233 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHS 233 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeee
Confidence 69999999999996 58999999976
No 44
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=97.06 E-value=0.00024 Score=57.19 Aligned_cols=45 Identities=38% Similarity=0.494 Sum_probs=37.4
Q ss_pred ceeeecCchHHHHHHHhc----CCCceEEeccccccCCCCC--CCchHHHH
Q 048360 2 ELYMRVSPELNLKRSIAG----GFRRLCEIGKCYRNEGMDL--THLPELTM 46 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~----g~~rVfeIg~~FRaE~~~~--rHl~EFtm 46 (199)
..+||+|....+.+.++. .--|+||||+|||+|..+. +|+.||+|
T Consensus 52 ~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~~~~~~~~~ef~~ 102 (211)
T cd00768 52 DLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQ 102 (211)
T ss_pred EEEECCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCCccccccceeEEE
Confidence 358999999999887664 4569999999999997654 78899987
No 45
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=96.32 E-value=0.0017 Score=59.20 Aligned_cols=44 Identities=34% Similarity=0.506 Sum_probs=32.5
Q ss_pred eeee--cCchHHHHHHH----hcCCCceEEeccccccCCCCCCCchHHHH
Q 048360 3 LYMR--VSPELNLKRSI----AGGFRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 3 ~yL~--~SPql~lk~ll----~~g~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
.+|| ..|+|+..... ...--|+||||+|||+|..+..|++||+|
T Consensus 258 l~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Q 307 (417)
T PRK09537 258 FCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTM 307 (417)
T ss_pred eEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEE
Confidence 4677 57888643210 01124799999999999988999999998
No 46
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=95.96 E-value=0.0021 Score=54.83 Aligned_cols=26 Identities=46% Similarity=0.782 Sum_probs=24.5
Q ss_pred CCceEEeccccccCCCCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
=-|+|+||+|||+|..+.+|+|||.+
T Consensus 102 p~kif~iG~VyR~D~~D~th~~~f~Q 127 (247)
T PF01409_consen 102 PIKIFEIGKVYRRDEIDATHLPEFHQ 127 (247)
T ss_dssp SEEEEEEEEEESSSCSBSSBESEEEE
T ss_pred CeEEEecCceEecCCcccccCcccee
Confidence 37999999999999999999999987
No 47
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=95.67 E-value=0.0067 Score=55.73 Aligned_cols=44 Identities=34% Similarity=0.519 Sum_probs=33.3
Q ss_pred eeee--cCchHHHHHHH----hcCCCceEEeccccccCCCCCCCchHHHH
Q 048360 3 LYMR--VSPELNLKRSI----AGGFRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 3 ~yL~--~SPql~lk~ll----~~g~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
.+|| +.|+|+.-... ...-.|+||||+|||+|..+..|+.||++
T Consensus 294 lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~Q 343 (453)
T TIGR02367 294 FCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTM 343 (453)
T ss_pred eEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEE
Confidence 4677 78888732211 11235999999999999999999999998
No 48
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=95.45 E-value=0.0061 Score=56.78 Aligned_cols=25 Identities=36% Similarity=0.682 Sum_probs=24.1
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|+|.||+|||+|..+..|+|||++
T Consensus 358 ~k~fsigrVfR~d~~DatH~~eFhQ 382 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDATHLAEFHQ 382 (494)
T ss_pred ceEEecCCEecCCCCCCCcCceeEE
Confidence 5999999999999999999999998
No 49
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=95.43 E-value=0.0048 Score=57.34 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=23.6
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|+|.||+|||+|..+.+|+|||.+
T Consensus 343 ~k~fsigrVfR~d~iDatH~~eFhQ 367 (492)
T PLN02853 343 KRYFSIDRVFRNEAVDRTHLAEFHQ 367 (492)
T ss_pred cEEEeccceecCCCCCcccCcccee
Confidence 4999999999999999999999986
No 50
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=95.25 E-value=0.014 Score=52.02 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=29.9
Q ss_pred ecCchHHHHHHHhcCC-CceEEeccccccCCCCCCCchHHHH
Q 048360 6 RVSPELNLKRSIAGGF-RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 6 ~~SPql~lk~ll~~g~-~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
++||-+- +.|-.... -|+|++|+|||++..+.+|.|+|.+
T Consensus 170 hTSp~qi-r~L~~~~~Pirif~~G~VyR~D~~DatH~~~FhQ 210 (339)
T PRK00488 170 HTSPVQI-RTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQ 210 (339)
T ss_pred cCcHHHH-HHHHhcCCCeEEEEeeeEEEcCCCCcccCcceee
Confidence 3566653 33222222 3899999999999999999999999
No 51
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=95.12 E-value=0.014 Score=48.54 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=37.2
Q ss_pred EEEEeecc----hhhhhcCCccccCCcHHHHHHHhcCCC---CC-cceecHHHHH-HHhCCCccceeeecCCC
Q 048360 128 RLELFVNK----REDQQMGDSEAMVIDGSFCTAHAKKQT---IS-YFATLIDGVS-FVTETKERHLVYARAHR 191 (199)
Q Consensus 128 rFel~i~G----~E~~~~g~~~~~~~d~~yl~a~~~G~p---Ph-G~giGleRl~-~l~g~~~i~~v~~~~~~ 191 (199)
+-+++++| .++-..|. +...-++. +|+| |. .+.|.+|+|. ..-|.++||+.+-..+|
T Consensus 153 sa~i~~~g~~~~~~iG~~G~-----lhP~vl~~--~~i~~~~~v~~~Eidl~~l~~~~~~~~~~~~~~~~~~~ 218 (218)
T cd00496 153 EVDVYCPGCLGWLEILGCGM-----VRPEVLEN--AGIDEEYSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218 (218)
T ss_pred EEEEEeCCCCCeEEEEeccc-----ccHHHHHH--CCCCCCceEEEEEecHHHHHHHHhCCcHHHHHhhcCCC
Confidence 55678877 33333332 33444444 6773 44 7899999976 77899999987765543
No 52
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=94.66 E-value=0.015 Score=50.70 Aligned_cols=56 Identities=7% Similarity=0.094 Sum_probs=36.8
Q ss_pred EEEEee-cch---hhhhcCCccccCCcHHHHHHHhcCCCC---C-cceecHHHHH-HHhCCCccceeeecCC
Q 048360 128 RLELFV-NKR---EDQQMGDSEAMVIDGSFCTAHAKKQTI---S-YFATLIDGVS-FVTETKERHLVYARAH 190 (199)
Q Consensus 128 rFel~i-~G~---E~~~~g~~~~~~~d~~yl~a~~~G~pP---h-G~giGleRl~-~l~g~~~i~~v~~~~~ 190 (199)
..|+++ +|. |+-..|. +...-+++ +|+++ . .||||+|||. +-.|.++||+.+--+.
T Consensus 222 e~~i~~~~g~~w~eiG~~G~-----vhP~Vl~~--~gi~~~~~v~afel~lerl~m~~~~i~dir~~~~~d~ 286 (294)
T TIGR00468 222 EIDVYCWEGKTWLEVLGAGM-----FRPEVLEP--MGIDPTYPGFAWGIGIERLAMLKYGIDDIRDLYENDL 286 (294)
T ss_pred EEEEEEeCCCccEEEEEecc-----CcHHHHHH--CCCCCCCeEEEEEeeHHHHHHHHhCCcHHHHHHcCCh
Confidence 456666 564 4434443 33445555 56654 5 9999999977 7789999998775443
No 53
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.031 Score=50.29 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=29.1
Q ss_pred hHHHHHHHhcCC--CceEEeccccccCCCCCCCchHHHH
Q 048360 10 ELNLKRSIAGGF--RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 10 ql~lk~ll~~g~--~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
.|| +|--.|| .|.|.|-+|||||..+..|++||.+
T Consensus 322 mLy--~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQ 358 (483)
T KOG2784|consen 322 MLY--RLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQ 358 (483)
T ss_pred HHH--HHHhCCCCcccccchhhhhhccccchHHHHHHhh
Confidence 455 3334566 6899999999999999999999998
No 54
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=94.07 E-value=0.04 Score=51.34 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=35.6
Q ss_pred EEEEeecc---hhhhhcCCccccCCcHHHHHHHhcCCC-CC-cceecHHHHH-HHhCCCccceeeec
Q 048360 128 RLELFVNK---REDQQMGDSEAMVIDGSFCTAHAKKQT-IS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 128 rFel~i~G---~E~~~~g~~~~~~~d~~yl~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
.-+++++| .|+-..|. +...-++. +|++ |. .|++|+|||. +..|.+|||+.+-.
T Consensus 421 ~~~i~~~g~~w~eiG~~G~-----l~Pevl~~--~gi~~~v~~~el~le~l~m~~~~~~dir~l~~~ 480 (489)
T PRK04172 421 EVEVYHEGLGWVELGGAGI-----FRPEVLEP--LGIDVPVLAWGLGIERLAMLRLGLDDIRDLYSS 480 (489)
T ss_pred EEEEEECCCCeEEEEeccc-----cCHHHHHH--CCCCCceEEEEEcHHHHHHHHhCCcHHHHHHhc
Confidence 34677766 34433443 23455555 4554 46 9999999976 88999999977653
No 55
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=94.03 E-value=0.018 Score=51.24 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=24.2
Q ss_pred CCceEEeccccccCCCCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
=-|+|.+|+|||+|..+.+|+|||.+
T Consensus 192 P~k~~~~grvyR~D~~DaTHs~~FhQ 217 (335)
T COG0016 192 PIKIFSPGRVYRNDTVDATHSPEFHQ 217 (335)
T ss_pred CceEecccceecCCCCCcccchheee
Confidence 35899999999999999999999987
No 56
>PLN02788 phenylalanine-tRNA synthetase
Probab=91.89 E-value=0.13 Score=46.99 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=26.8
Q ss_pred HhcCCCceEEeccccccCCCCCCCchHHHH
Q 048360 17 IAGGFRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 17 l~~g~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
|..+-.|++.+|+|||+|..+++|.|+|.+
T Consensus 143 l~~~~~~~~~~g~VyRrD~iD~tH~p~FhQ 172 (402)
T PLN02788 143 LRAGHTHFLVTGDVYRRDSIDATHYPVFHQ 172 (402)
T ss_pred HHhCCCcEEEEeeEeecCCCCcccCcccee
Confidence 445667999999999999999999999986
No 57
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=91.30 E-value=0.068 Score=42.43 Aligned_cols=24 Identities=50% Similarity=0.890 Sum_probs=19.8
Q ss_pred ceEEeccccccCC---CCCCCchHHHH
Q 048360 23 RLCEIGKCYRNEG---MDLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~---~~~rHl~EFtm 46 (199)
|+|++|+|||+|. .+-.++-||+|
T Consensus 85 ~~~~~g~~fR~E~~~~~gl~R~reF~~ 111 (173)
T PF00587_consen 85 KLYQIGTCFRNEARPTRGLFRLREFTM 111 (173)
T ss_dssp EEEEEEEEEBSSSSSBSTTTS-SEEEE
T ss_pred EEeecccccccccccccccceeeEeee
Confidence 8999999999993 24678889999
No 58
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=91.14 E-value=0.079 Score=45.18 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=20.6
Q ss_pred CC-cceecHHHHH-HHhCCCccceeeec
Q 048360 163 IS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 163 Ph-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
|. .||||+|||+ +..|.++||+.+-.
T Consensus 212 ~~~A~G~GleRlam~~~gi~diR~~~~~ 239 (247)
T PF01409_consen 212 PGFAFGLGLERLAMLKYGIPDIRLLYSN 239 (247)
T ss_dssp EEEEEEEEHHHHHHHHHT-SSGGHHHTT
T ss_pred eEEEecCCHHHHHHHHcCCchHHHHhcC
Confidence 55 8999999976 88999999976543
No 59
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=88.61 E-value=0.08 Score=42.31 Aligned_cols=49 Identities=16% Similarity=0.010 Sum_probs=31.1
Q ss_pred eeEEEEEeec-----chhhhhcCCc---cccCCc-HHHHHHHhcCCCCC-cceecHHHH
Q 048360 125 LTLRLELFVN-----KREDQQMGDS---EAMVID-GSFCTAHAKKQTIS-YFATLIDGV 173 (199)
Q Consensus 125 ~~~rFel~i~-----G~E~~~~g~~---~~~~~d-~~yl~a~~~G~pPh-G~giGleRl 173 (199)
...+.|+.+. |.|+-..|.. .....| .++.++.+++.||+ |+|+|+||+
T Consensus 153 ~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 153 AGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred CCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCceeecCccCccCC
Confidence 4577889988 8773333221 111122 23344568999999 999999995
No 60
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=87.96 E-value=0.19 Score=46.89 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCC---CC-cceecHHHHH-HHhCCCccceeeec------CCCcceeecc
Q 048360 151 GSFCTAHAKKQT---IS-YFATLIDGVS-FVTETKERHLVYAR------AHRGYACWLH 198 (199)
Q Consensus 151 ~~yl~a~~~G~p---Ph-G~giGleRl~-~l~g~~~i~~v~~~------~~~~~~~~~~ 198 (199)
+.-|..+ |.| +- .||||+||+. +..|.++||+.+-. --+-..||++
T Consensus 435 pevl~~~--Gi~~~~~~~A~GlGleRlaMl~ygi~DIR~l~~~k~Dl~~lr~~p~~~~~ 491 (492)
T PLN02853 435 PEMLLPM--GLPEDVNVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKRNPICRLG 491 (492)
T ss_pred HHHHHhC--CCCCcceEEEEEecHHHHHHHHhCCcHHHHHhCCCCCHHHHhhCcccccC
Confidence 3455554 665 24 7999999976 77899999977762 1234557765
No 61
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.68 E-value=0.31 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.0
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|||||.|....=..=||++
T Consensus 102 ~k~yy~g~vfRyErPQ~GR~RqF~Q 126 (429)
T COG0124 102 LKLYYFGPVFRYERPQKGRYRQFYQ 126 (429)
T ss_pred eeEEEecceecCCCCCCCCceeeEE
Confidence 4899999999999986555667888
No 62
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=87.47 E-value=0.16 Score=43.18 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.1
Q ss_pred CceEEeccccccCCCCC---CCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
=|+||||+|||||.+.. -..-||||
T Consensus 108 ~~~~qig~~fR~E~~~~~gl~R~ReF~q 135 (254)
T cd00774 108 FGVAQIGKSFRNEISPRNGLFRVREFTQ 135 (254)
T ss_pred chhhhhchhhccccCcccceeeeccchh
Confidence 38999999999998644 46789999
No 63
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=86.77 E-value=0.25 Score=43.99 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=22.8
Q ss_pred cceecHHHHH-HHhCCCccceeeecCCC
Q 048360 165 YFATLIDGVS-FVTETKERHLVYARAHR 191 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v~~~~~~ 191 (199)
.||||+|||. ...|.++||+.+-.+.|
T Consensus 304 AfGlGlERlAMLkygI~DIR~l~~~D~r 331 (335)
T COG0016 304 AFGLGLERLAMLKYGIPDIRDLYENDLR 331 (335)
T ss_pred EEeecHHHHHHHHhCCcHHHHHHhccch
Confidence 6899999987 77899999988876655
No 64
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=86.60 E-value=0.35 Score=43.19 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=27.9
Q ss_pred cHHHHHHHhcCCCC--C-cc--eecHHHHH-HHhCCCccceeeecCCC
Q 048360 150 DGSFCTAHAKKQTI--S-YF--ATLIDGVS-FVTETKERHLVYARAHR 191 (199)
Q Consensus 150 d~~yl~a~~~G~pP--h-G~--giGleRl~-~l~g~~~i~~v~~~~~~ 191 (199)
++.-|++ .|..| . || |||+|||. +..|.++||+.+--+.|
T Consensus 289 ~p~vl~~--~gid~~~~~G~AfG~GleRlaMl~ygi~DiR~~~~~D~r 334 (339)
T PRK00488 289 HPNVLRN--VGIDPEEYSGFAFGMGIERLAMLKYGIDDIRLFYENDLR 334 (339)
T ss_pred CHHHHHH--cCCCcccceEEEEeecHHHHHHHHhCCcHHHHHHhcCHh
Confidence 3455554 36645 4 66 99999976 77899999987754443
No 65
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=86.13 E-value=0.44 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCceEEeccccccCCCCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
--|.|++|+|||+|..+..|.-||++
T Consensus 98 p~r~~~~g~vfR~e~~~~gr~ref~Q 123 (412)
T PRK00037 98 PFKLYYIGPMFRYERPQKGRYRQFHQ 123 (412)
T ss_pred CeEEEEEcCccccCCCCCCcccceEE
Confidence 36999999999999887778889999
No 66
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=85.76 E-value=0.51 Score=39.97 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|++|+|||+|..+..|.-||++
T Consensus 83 ~k~~y~g~vfR~e~~~~g~~re~~Q 107 (261)
T cd00773 83 LKLYYIGPVFRYERPQKGRYREFYQ 107 (261)
T ss_pred eEEEEEcCEEecCCCCCCCccceEE
Confidence 5899999999999988788999999
No 67
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=84.94 E-value=0.31 Score=40.06 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=20.9
Q ss_pred CceEEeccccccCCCC---CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
-|+|++|+|||+|.+. ....-||+|
T Consensus 89 ~r~~~~g~~fR~E~~~~~gl~R~reF~q 116 (235)
T cd00670 89 LRLDQIGPCFRHEPSGRRGLMRVREFRQ 116 (235)
T ss_pred eeeeeecccccCCCCCCCCChhheeeee
Confidence 3899999999999876 345679999
No 68
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=84.63 E-value=0.54 Score=42.21 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.3
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|++|+|||+|..+.-|.-||++
T Consensus 98 ~r~~y~g~vfR~e~~~~gr~ref~Q 122 (397)
T TIGR00442 98 FKLYYIGPMFRYERPQKGRYRQFHQ 122 (397)
T ss_pred eEEEEEcCeecCCCCCCCcccceEE
Confidence 4899999999999887667789999
No 69
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=82.10 E-value=0.53 Score=44.09 Aligned_cols=35 Identities=3% Similarity=-0.049 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCC---C-cceecHHHHH-HHhCCCccceeee
Q 048360 151 GSFCTAHAKKQTI---S-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 151 ~~yl~a~~~G~pP---h-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
+..|+.+ |.|. - .||||+||+. +..|.++||+.+-
T Consensus 450 pevL~~~--Gi~~~~~~~A~GlGleRlaMi~ygi~DIR~l~~ 489 (494)
T PTZ00326 450 PEMLRPM--GFPEDVTVIAWGLSLERPTMIKYGIKNIRDLFG 489 (494)
T ss_pred HHHHHhc--CCCCcceEEEEEecHHHHHHHHhCCcHHHHHhc
Confidence 4566554 7752 3 7999999976 7789999997664
No 70
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=80.89 E-value=0.69 Score=42.77 Aligned_cols=28 Identities=4% Similarity=-0.256 Sum_probs=22.2
Q ss_pred hcCCC-CC-cceecHHHHH-HHhCCCcccee
Q 048360 158 AKKQT-IS-YFATLIDGVS-FVTETKERHLV 185 (199)
Q Consensus 158 ~~G~p-Ph-G~giGleRl~-~l~g~~~i~~v 185 (199)
.+|+. |. +||||||||. ...|.+|||++
T Consensus 409 ~fGIe~PVvAfEI~LeRLam~~~g~~dir~~ 439 (453)
T TIGR02367 409 EWGIDKPWIGAGFGLERLLKVKHDFKNIKRA 439 (453)
T ss_pred ccCCCCccEEEEeehhHHHHHHhCcHHHHHH
Confidence 34543 68 9999999976 77899999854
No 71
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=78.35 E-value=1.4 Score=40.09 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=29.1
Q ss_pred HHHHhcCCC-CC-cceecHHHHH-HHhCCCccc-eeeecCC
Q 048360 154 CTAHAKKQT-IS-YFATLIDGVS-FVTETKERH-LVYARAH 190 (199)
Q Consensus 154 l~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~-~v~~~~~ 190 (199)
+..-+||.| |- -.|+|+|||. .|-|.++|| .|+|-.+
T Consensus 314 ~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~mvYpqi~ 354 (536)
T COG2024 314 IALAEYGIDYPVMNLGLGVERLAMILHGADDVRSMVYPQIY 354 (536)
T ss_pred HHHHHcCCCCceeecchhHHHHHHHHhCchHHhhhhccccc
Confidence 455589998 66 9999999998 555677887 7888655
No 72
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.65 E-value=1.9 Score=39.21 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=19.4
Q ss_pred cceecHHHHH-HHhCCCccceeeecC
Q 048360 165 YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
-||||+|||. .|.+.++||..-.++
T Consensus 298 afglgLerLAMll~~IpDiRlfWs~D 323 (436)
T KOG2783|consen 298 AFGLGLERLAMLLFDIPDIRLFWSFD 323 (436)
T ss_pred eeeccHHHHHHHHhcCcchheeeccc
Confidence 5799999997 677888998764443
No 73
>PLN02788 phenylalanine-tRNA synthetase
Probab=71.84 E-value=2.1 Score=39.21 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=32.3
Q ss_pred EEEEEeecchhhhhcCCccccCCcHHHHHHHhcCCCC--C-cceecHHHHHH-HhCCCccceeee
Q 048360 127 LRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTI--S-YFATLIDGVSF-VTETKERHLVYA 187 (199)
Q Consensus 127 ~rFel~i~G~E~~~~g~~~~~~~d~~yl~a~~~G~pP--h-G~giGleRl~~-l~g~~~i~~v~~ 187 (199)
...|++++|.=+.-.|- -.+.+.-+++ +|+++ . .||||+|||.| ..|.++||+.+-
T Consensus 230 ~e~dI~~~g~WlEvlG~---G~vhP~Vl~~--~gi~~~~g~AfglgLeRLaml~~~I~DIRlf~~ 289 (402)
T PLN02788 230 FELEIFFKGEWLEVLGC---GVTEQEILKN--NGRSDNVAWAFGLGLERLAMVLFDIPDIRLFWS 289 (402)
T ss_pred eEEEEEECCEEEEEeeE---EEEcHHHHHH--cCCCCCcEEEEEEeHHHHHHhhcCCchhhhhhc
Confidence 34566666621212221 1133455555 57777 3 88999999875 667777765443
No 74
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=71.08 E-value=3.8 Score=35.74 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|+|.+|+|||+|....-+.-||++
T Consensus 88 ~r~~y~g~VfR~~~~~~gr~re~~Q 112 (314)
T TIGR00443 88 LRLCYAGNVFRTNESGAGRSREFTQ 112 (314)
T ss_pred eEEEEeceEeecCCCcCCCcccccc
Confidence 5999999999999988778889998
No 75
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=70.14 E-value=4.2 Score=36.68 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.4
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||.|....-+.-||++
T Consensus 99 ~r~~y~g~vfR~~~~~~gr~ref~Q 123 (391)
T PRK12292 99 LRLCYAGNVFRAQERGLGRSREFLQ 123 (391)
T ss_pred eEEEeeceeeecCCCcCCCccchhc
Confidence 3899999999999887777889999
No 76
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=69.32 E-value=1.5 Score=37.41 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=19.8
Q ss_pred ceEEeccccccCCCCC---CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
|+|++++|||+|.+++ -..-||+|
T Consensus 121 r~~~~~~~fR~E~~~~~Gl~R~reF~~ 147 (261)
T cd00778 121 KINQWVNVFRWETKTTRPFLRTREFLW 147 (261)
T ss_pred HHHhhhhhccCCCCCCCceeEeeeeee
Confidence 6899999999999763 35678998
No 77
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=68.67 E-value=1.7 Score=40.37 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=22.4
Q ss_pred ceEEeccccccCCCCCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
++.-.|.|||++..++.|.|-|.+
T Consensus 135 ~~i~~G~VYRrD~iDatH~p~FHQ 158 (460)
T TIGR00469 135 GFLISADVYRRDEIDKTHYPVFHQ 158 (460)
T ss_pred eeEeecceeeCCCCccccCcccee
Confidence 388899999999999999999998
No 78
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=67.85 E-value=3.4 Score=35.35 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.5
Q ss_pred ceEEeccccccCCCCCC---CchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLT---HLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~r---Hl~EFtm 46 (199)
|+|++++|||+|..+.+ ..-||+|
T Consensus 121 rl~~~~~~fR~E~r~~~Gl~R~reF~~ 147 (264)
T cd00772 121 HLNQIGNKFRDEIRPRFGFLRAREFIM 147 (264)
T ss_pred eEEEEeCeEeCcCCCCCCcceeeEEEE
Confidence 99999999999965433 5678988
No 79
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=66.84 E-value=3.1 Score=38.23 Aligned_cols=27 Identities=4% Similarity=-0.306 Sum_probs=22.6
Q ss_pred hcCCC-CC-cceecHHHHH-HHhCCCccce
Q 048360 158 AKKQT-IS-YFATLIDGVS-FVTETKERHL 184 (199)
Q Consensus 158 ~~G~p-Ph-G~giGleRl~-~l~g~~~i~~ 184 (199)
.+|+. |. +|+||+|||+ ...|.+||+.
T Consensus 373 ~fGI~~PVva~EIdLerL~~~~~g~~~ir~ 402 (417)
T PRK09537 373 EWGIDKPWIGAGFGLERLLKVKHGYKNIKR 402 (417)
T ss_pred hcCCCCceEEEEEeHHHHHHHHhCcHHHHH
Confidence 46665 78 9999999976 8889999985
No 80
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=66.74 E-value=3.4 Score=37.79 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.4
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|++|+|||+|....-..-||++
T Consensus 103 ~R~~y~g~vfR~e~~q~GR~Ref~Q 127 (430)
T CHL00201 103 QRLWYSGPMFRYERPQSGRQRQFHQ 127 (430)
T ss_pred eEEEEEcceecCCCCcCCccceeEE
Confidence 3999999999999865444559998
No 81
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=64.98 E-value=3.3 Score=39.13 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=19.9
Q ss_pred ceEEeccccccCCCCC----CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
|.|++|+|||+|.++. -..-||++
T Consensus 290 r~~~~g~~fR~E~~~~~~Gl~R~reF~q 317 (575)
T PRK12305 290 RLAEFGTVYRYEKSGVLHGLTRVRGFTQ 317 (575)
T ss_pred hhEEecccccCCCCCCCcCcccccCeEE
Confidence 8999999999998753 24468999
No 82
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=63.55 E-value=1.5 Score=37.31 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=18.9
Q ss_pred ceEEeccccccCCCCCC---CchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLT---HLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~r---Hl~EFtm 46 (199)
|+|++|+|||+|....+ ..-||+|
T Consensus 115 r~~~~~~~FR~E~~~~~Gl~R~reF~q 141 (255)
T cd00779 115 NLYQIQTKFRDEIRPRFGLMRGREFLM 141 (255)
T ss_pred HHHhCcceecCCCCCCCceeeeeeEeH
Confidence 89999999999954322 5678888
No 83
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.40 E-value=4 Score=37.39 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=27.5
Q ss_pred eeeecCchHHHHHHHhcC------C-CceEEeccccccCCCC-------CCCchHHHH
Q 048360 3 LYMRVSPELNLKRSIAGG------F-RRLCEIGKCYRNEGMD-------LTHLPELTM 46 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g------~-~rVfeIg~~FRaE~~~-------~rHl~EFtm 46 (199)
.||+-..|..+=.+...- + =|+|++++|||+|-++ -...-||+|
T Consensus 227 ~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k 284 (418)
T TIGR00414 227 LYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNK 284 (418)
T ss_pred EEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceee
Confidence 456655555543332221 1 4799999999999742 225578888
No 84
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=62.39 E-value=3.9 Score=38.80 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=19.2
Q ss_pred ceEEeccccccCCCCCC---CchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLT---HLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~r---Hl~EFtm 46 (199)
|.|+|+++||.|....+ ..-||+|
T Consensus 131 r~yqi~~~fR~E~rp~~Gl~R~reF~q 157 (565)
T PRK09194 131 NLYQIQTKFRDEIRPRFGLMRGREFIM 157 (565)
T ss_pred EEEEeeCCccCCCCCCCcccccccEEE
Confidence 89999999999954322 5679999
No 85
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=61.27 E-value=5.2 Score=36.23 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.1
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||.+....-..-||++
T Consensus 102 ~R~~Y~g~VfR~~~~~~gr~rEf~Q 126 (392)
T PRK12421 102 ARLCYAGSVLHTLPQGLFGSRTPLQ 126 (392)
T ss_pred eEEEEeeeEEEcCCCcCCCcCccce
Confidence 5999999999998876556678998
No 86
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=60.43 E-value=4.3 Score=38.70 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.2
Q ss_pred ceEEeccccccCCCCC---CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
|+|+|+++||+|...+ -..-||+|
T Consensus 131 rlyqi~~~fR~E~rpr~Gl~R~REF~~ 157 (568)
T TIGR00409 131 NLYQIQTKFRDEIRPRFGLMRGREFIM 157 (568)
T ss_pred EEEEeeCEeeCCCCCCCCccccccEEE
Confidence 9999999999995322 25679999
No 87
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=59.82 E-value=2.5 Score=36.75 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=19.8
Q ss_pred CceEEeccccccCCCC-------CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD-------LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~-------~rHl~EFtm 46 (199)
=|+|++|+|||+|.+. --..-||+|
T Consensus 132 lr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~ 163 (297)
T cd00770 132 LKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEK 163 (297)
T ss_pred chheecChhHhCccccCCCCCCCceEEEeeee
Confidence 4789999999999752 235679999
No 88
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=59.76 E-value=5.6 Score=34.38 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.5
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||.|. .||++
T Consensus 96 ~r~~Y~g~vfR~~~------rEf~Q 114 (281)
T PRK12293 96 KKWFYIQPVFRYPS------NEIYQ 114 (281)
T ss_pred eeEEEeccEEecCC------Ccccc
Confidence 38999999999884 58988
No 89
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=59.47 E-value=2.7 Score=38.62 Aligned_cols=25 Identities=24% Similarity=0.116 Sum_probs=20.2
Q ss_pred CceEEeccccccCCCCC---CCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
=|+||+|++||+|.+.. ...-||+|
T Consensus 130 lrl~q~~~~fR~E~~~~~GL~R~reF~~ 157 (439)
T PRK12325 130 LNLYHIQWKFRDEIRPRFGVMRGREFLM 157 (439)
T ss_pred hHheEecCEecCCCCCCCCccccceEeE
Confidence 58999999999996642 25679999
No 90
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=59.30 E-value=3.5 Score=38.17 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.0
Q ss_pred CceEEeccccccCCCCCC---CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLT---HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~r---Hl~EFtm 46 (199)
=|+.|+|+|||||-++.. ..-|||+
T Consensus 187 lr~aq~g~~~RnE~s~~~gL~RvReF~q 214 (456)
T PRK04173 187 FGIAQIGKSFRNEITPRNFIFRTREFEQ 214 (456)
T ss_pred eeeeEEchhHhCccCCCCCceeeceeee
Confidence 379999999999988632 3379999
No 91
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.15 E-value=11 Score=34.41 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.8
Q ss_pred ceEEeccccccCCCC---CCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
||||||+=||+|-.. --.--||.|
T Consensus 137 ~vYQigrKfRDElrpRfGLlRgREFlM 163 (457)
T KOG2324|consen 137 RVYQIGRKFRDELRPRFGLLRGREFLM 163 (457)
T ss_pred EeeeechhhhhccCccccchhhHHHHH
Confidence 899999999999642 345679999
No 92
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=57.69 E-value=14 Score=32.02 Aligned_cols=63 Identities=13% Similarity=-0.035 Sum_probs=37.2
Q ss_pred CCceeEEEEEeecchh-----h----hhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCcccee
Q 048360 122 KPGLTLRLELFVNKRE-----D----QQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLV 185 (199)
Q Consensus 122 ~p~~~~rFel~i~G~E-----~----~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v 185 (199)
+|.+-..|||---|+- + .-.|++....+ +|.=+.+.--+|-. |-|||=.||+ +++..+.|-+|
T Consensus 240 n~~l~~afElSSMGIRVde~~l~~Ql~ltgdeDrl~~-~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeV 313 (330)
T COG2502 240 NPVLGDAFELSSMGIRVDEDALKRQLALTGDEDRLEL-EWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEV 313 (330)
T ss_pred chhccchheeecceeEecHHHHHHHHhccCchhhhcC-HHHHHHHcCCCCccccCcccHHHHHHHHhccccccee
Confidence 3555666777655653 1 22344333334 34444444446777 9999999988 55556677654
No 93
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=57.09 E-value=6 Score=34.46 Aligned_cols=25 Identities=40% Similarity=0.745 Sum_probs=22.7
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|+||||+|||++..+.+|+|||.+
T Consensus 151 irlFEiGrVfr~d~~d~~~~pef~q 175 (294)
T TIGR00468 151 IRIFSPGRVFRNDTVDATHLPEFHQ 175 (294)
T ss_pred ceEEEecceEEcCCCCCccCChhhE
Confidence 4999999999999878899999986
No 94
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=57.03 E-value=7.2 Score=33.84 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.6
Q ss_pred ceEEeccccccCCCCC----CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
|+|++|+|||+|.++. -..-||++
T Consensus 113 r~~~~g~vfR~E~~~~~~Gl~R~reF~q 140 (298)
T cd00771 113 RLAEFGTVHRYEQSGALHGLTRVRGFTQ 140 (298)
T ss_pred EEEEecCcccCCCCCCCCCccccccEEE
Confidence 9999999999998752 24568988
No 95
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=56.38 E-value=7.4 Score=35.39 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.4
Q ss_pred ceEEeccccccCCCCCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
|.|.+|+|||.|....-+.-||++
T Consensus 101 r~~y~g~vfR~~~~~~gr~rE~~Q 124 (423)
T PRK12420 101 KRYEIGKVFRDGPIKQGRFREFIQ 124 (423)
T ss_pred eEEEEcceECCCCCCCCccceeEE
Confidence 899999999999877667889998
No 96
>PLN02530 histidine-tRNA ligase
Probab=56.07 E-value=7.4 Score=36.28 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.0
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||.|....-+.-||++
T Consensus 165 ~r~~y~g~vfR~e~~q~gr~REf~Q 189 (487)
T PLN02530 165 LKWFAIGQCWRYERMTRGRRREHYQ 189 (487)
T ss_pred eEEEEEcCEEcCcCCCCCCccceEE
Confidence 3899999999999876555778988
No 97
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.13 E-value=5.3 Score=36.70 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=28.9
Q ss_pred ceeeecCchHHHHHHHhcCC-------CceEEeccccccCCCCC-------CCchHHHH
Q 048360 2 ELYMRVSPELNLKRSIAGGF-------RRLCEIGKCYRNEGMDL-------THLPELTM 46 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~-------~rVfeIg~~FRaE~~~~-------rHl~EFtm 46 (199)
+.||+-..|..+=.+..... =|+|++++|||+|-+++ -..-||+|
T Consensus 224 ~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k 282 (425)
T PRK05431 224 DLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDK 282 (425)
T ss_pred CEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeee
Confidence 35666666655533333221 48999999999997531 25578988
No 98
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=54.64 E-value=3.5 Score=39.18 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEeccccccCCCCC----CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
|.||+|+|||+|.++. -..-|||+
T Consensus 251 R~~e~g~vfR~E~sg~l~GL~RvReF~Q 278 (545)
T PRK14799 251 RFSEFGHVYRWEKKGELYGLLRVRGFVQ 278 (545)
T ss_pred hhEEecceecCCCCCCccccccceeEEE
Confidence 8899999999999875 46678998
No 99
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=54.08 E-value=7.4 Score=36.18 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred ceEEeccccccCCCCC---CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
|+||+++|||+|.+.+ -..-||+|
T Consensus 127 r~~q~~~vfR~E~~~~~gl~R~rEF~~ 153 (472)
T TIGR00408 127 KINQWVNVFRYETKHTRPFLRTREFTW 153 (472)
T ss_pred HHhheeeeecCCCCCCCCcceeeeeeh
Confidence 8899999999999753 35679999
No 100
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=53.17 E-value=7 Score=37.03 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=19.4
Q ss_pred eEEeccccccCCCC---CCCchHHHH
Q 048360 24 LCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 24 VfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
|-|||++||||=+- --.+-||||
T Consensus 190 iaQIGKsfRNEISPr~gl~R~REF~Q 215 (558)
T COG0423 190 IAQIGKSFRNEISPRNGLFRTREFEQ 215 (558)
T ss_pred EEeechhhccccCcccceeehhhhhh
Confidence 78999999999753 457889999
No 101
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=53.08 E-value=4.2 Score=38.87 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.8
Q ss_pred ceEEeccccccCCCCCC----CchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLT----HLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~r----Hl~EFtm 46 (199)
|.|++|+|||+|.++.. ..-|||+
T Consensus 354 r~~~~g~~fR~E~~~~~~Gl~R~reF~q 381 (638)
T PRK00413 354 RLAEFGTVHRYEPSGALHGLMRVRGFTQ 381 (638)
T ss_pred eeeeccCeecCCCCCCCcCcceeeeeEE
Confidence 99999999999987532 3468999
No 102
>PLN02908 threonyl-tRNA synthetase
Probab=50.82 E-value=8.5 Score=37.48 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=19.7
Q ss_pred ceEEeccccccCCCC----CCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMD----LTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~----~rHl~EFtm 46 (199)
|+|++|+|||+|.++ -...-|||+
T Consensus 404 r~~~~g~~fR~E~~~~l~Gl~RvReF~q 431 (686)
T PLN02908 404 RLADFGVLHRNELSGALTGLTRVRRFQQ 431 (686)
T ss_pred hHEEeeccccCCCCcCCcCccccccEEE
Confidence 789999999999874 335568888
No 103
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=50.53 E-value=9.2 Score=35.67 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=22.6
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|+||||+|||+|..+..|++||++
T Consensus 351 ~rlFeiGrVFR~e~~d~~~l~Ef~q 375 (489)
T PRK04172 351 QKYFSIGRVFRPDTIDATHLPEFYQ 375 (489)
T ss_pred eEEEEecceEcCCCCCcccCCchhe
Confidence 4999999999999988888999987
No 104
>PLN02837 threonine-tRNA ligase
Probab=50.49 E-value=9.4 Score=36.70 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.0
Q ss_pred CceEEeccccccCCCCC----CCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
=|++|+|+|||+|.+++ ...-||++
T Consensus 330 lr~~~~~~~~R~E~~g~~~GL~RvreF~~ 358 (614)
T PLN02837 330 IRVAELGTVYRYELSGSLHGLFRVRGFTQ 358 (614)
T ss_pred HhhEeecccccCCCCCCCcCcccccceEE
Confidence 47899999999998753 35568988
No 105
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=49.38 E-value=6 Score=36.84 Aligned_cols=25 Identities=12% Similarity=-0.124 Sum_probs=20.3
Q ss_pred CceEEeccccccCCCCC--CCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDL--THLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~--rHl~EFtm 46 (199)
=|+||+++|||+|.+.+ -..-||+|
T Consensus 132 lrl~q~~~vfR~E~~~rgl~R~rEF~~ 158 (477)
T PRK08661 132 LLYNQWVNVVRWETKTRPFLRTREFLW 158 (477)
T ss_pred HHHhcccceeeCCCCCCCcceeeeEEE
Confidence 37899999999999832 36678988
No 106
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=49.18 E-value=13 Score=33.45 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=17.2
Q ss_pred HHHHHHhcCCC-CC-cceecHHHHHHH
Q 048360 152 SFCTAHAKKQT-IS-YFATLIDGVSFV 176 (199)
Q Consensus 152 ~yl~a~~~G~p-Ph-G~giGleRl~~l 176 (199)
..++.+ |-+ |. |||+|+|||+.+
T Consensus 295 ~L~~~f--g~~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 295 DLLGRF--GRARPATGFSLDLDRLLEL 319 (391)
T ss_pred hHHHHc--CCCCCCceEEeeHHHHHhh
Confidence 456666 644 67 999999998864
No 107
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=47.72 E-value=11 Score=36.21 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.4
Q ss_pred ceEEeccccccCCCCC----CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
|.|++|+|||.|.++. -..-||+|
T Consensus 357 r~~~~g~~fR~E~~~~~~Gl~R~reF~q 384 (639)
T PRK12444 357 RMCEFGQVHRHEFSGALNGLLRVRTFCQ 384 (639)
T ss_pred eeEEeccccCCCCCcCCcCcceeeeeEE
Confidence 8999999999998642 24568988
No 108
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=47.66 E-value=17 Score=33.21 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=17.6
Q ss_pred HHHHHHhcCC-CCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQ-TIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~-pPh-G~giGleRl~~l~ 177 (199)
.++..+- |. -|. ||++|+|||+.++
T Consensus 289 ~L~~~fg-~~~~PavGfa~g~erl~~~l 315 (430)
T CHL00201 289 SLIHQLG-GPKTPAVGCAIGLERLLLIA 315 (430)
T ss_pred HHHHHhC-CCCCCeeEEEecHHHHHHHH
Confidence 5666652 22 378 9999999988554
No 109
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=47.51 E-value=15 Score=33.18 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=16.8
Q ss_pred HHHHHHhcCC-CCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQ-TIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~-pPh-G~giGleRl~~l~ 177 (199)
..++.+ |. .|. |||+|+|||+.++
T Consensus 302 ~L~~~f--g~~~pAvGfai~lerL~~~l 327 (392)
T PRK12421 302 GIGEAF--GRARPATGFSMDLKELLALQ 327 (392)
T ss_pred chhHhh--CCCCCCceEEeeHHHHHhhc
Confidence 345544 43 477 9999999988554
No 110
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=47.46 E-value=11 Score=35.46 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.0
Q ss_pred ceEEeccccccCCCCC----CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
|+|++|+|||+|.++. -..-||+|
T Consensus 284 rl~~~g~~fR~E~~g~~~Gl~R~reF~q 311 (563)
T TIGR00418 284 RIAELGYSHRYEQSGELHGLMRVRGFTQ 311 (563)
T ss_pred eeeEeccccCCCCCcCCcCcccccceEE
Confidence 8999999999996542 24567888
No 111
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=46.01 E-value=13 Score=35.69 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=28.1
Q ss_pred eeecCchHHHHHHHhcC----CCceEEeccccccC---CC-CCCCchHHHH
Q 048360 4 YMRVSPELNLKRSIAGG----FRRLCEIGKCYRNE---GM-DLTHLPELTM 46 (199)
Q Consensus 4 yL~~SPql~lk~ll~~g----~~rVfeIg~~FRaE---~~-~~rHl~EFtm 46 (199)
+++.|.=...|....|- ..|+=..-+|.|+- +. +.||++=|-|
T Consensus 36 lftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~~Dle~VG~~rHhTfFEM 86 (594)
T PRK01584 36 LFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRTGDIDEVGDLSHLTFFEM 86 (594)
T ss_pred eeeccchhhhhHHhcCCCCCCCCCccccccccccccccccCCCcchhHHHh
Confidence 44444444445544331 36777888899994 33 4899999999
No 112
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=45.52 E-value=12 Score=31.87 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.8
Q ss_pred CceEEeccccccCC-----CCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEG-----MDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~-----~~~rHl~EFtm 46 (199)
.|+-..-+|.|+-+ .+.||++=|.|
T Consensus 56 ~r~~~~QkCiR~~DienVG~t~rHhTfFEM 85 (232)
T cd00673 56 NRLVNSQKCIRAGDIDNVGKTGRHHTFFEM 85 (232)
T ss_pred CceeeeeeceecCChhhccccccchhhhhh
Confidence 58888899999843 35899999999
No 113
>PRK07080 hypothetical protein; Validated
Probab=45.43 E-value=5.8 Score=35.14 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=20.2
Q ss_pred ceEEe-ccccccCCC-CCCCchHHHH
Q 048360 23 RLCEI-GKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 23 rVfeI-g~~FRaE~~-~~rHl~EFtm 46 (199)
++|.+ |.|||+|++ +.+.+-||.|
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~m 178 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRM 178 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheee
Confidence 66665 789999997 5888899999
No 114
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=44.32 E-value=22 Score=29.95 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=16.7
Q ss_pred HHHHHHhcCCC-CC-cceecHHHHHHH
Q 048360 152 SFCTAHAKKQT-IS-YFATLIDGVSFV 176 (199)
Q Consensus 152 ~yl~a~~~G~p-Ph-G~giGleRl~~l 176 (199)
..++.+ .|.+ |. ||++|+|||+.+
T Consensus 234 ~L~~~f-~~~~~~avGfa~~~d~l~~~ 259 (261)
T cd00773 234 GLLEEF-GGEDVPAVGFAIGLERLLLA 259 (261)
T ss_pred HHHHHh-CCCCCCeEEEEEcHHHHHHh
Confidence 455555 3444 67 999999998743
No 115
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=43.25 E-value=19 Score=33.55 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=18.3
Q ss_pred cceecHHHHH-HHhCCCccceeee
Q 048360 165 YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
-||||+|||. +..|.++||+.+-
T Consensus 317 AfGiGleRlaMl~~gi~DiR~~~~ 340 (460)
T TIGR00469 317 AFGLGLDRIAMLLFDIPDIRLFWS 340 (460)
T ss_pred EEEecHHHHHHHHcCccHHHHHhc
Confidence 5789999975 7788999886554
No 116
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=43.11 E-value=13 Score=33.49 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.1
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||.+. + +.-||++
T Consensus 83 ~R~~Y~g~VfR~~~-g--r~rEf~Q 104 (373)
T PRK12295 83 ARYAYLGEVFRQRR-D--RASEFLQ 104 (373)
T ss_pred eEEEEEccEEECCC-C--CCCcceE
Confidence 58999999999982 2 3458877
No 117
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=42.17 E-value=12 Score=35.41 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=17.4
Q ss_pred ceEEeccccccCCCCCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
|+||||+||++++.+..|..|+++
T Consensus 440 ~lFEiG~Vf~~~~~~~~~~~e~~~ 463 (552)
T PRK09616 440 KIFEIGDVVLIDESTETGTRTERK 463 (552)
T ss_pred eEEEeeEEEecCCccccCcchhhE
Confidence 899999999987644445556554
No 118
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=41.52 E-value=8.5 Score=33.12 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.2
Q ss_pred CCceEEeccccccCCCCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
..|+|.+|+|||.+.....+.-||++
T Consensus 88 ~~r~~y~g~vfR~~~~~~g~~re~~Q 113 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERPGKGRPREFYQ 113 (311)
T ss_dssp SEEEEEEEEEEEEETTTTTBESEEEE
T ss_pred CceEEEEcceeeccccCCCCCceeEE
Confidence 47899999999999877667778888
No 119
>KOG2330 consensus Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=41.24 E-value=28 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=33.3
Q ss_pred hhccc---CCCcccccCCCCceeEEEEEeecchh----------------h-hhcCCccccCCcHHHHHHHhcCCCC
Q 048360 107 LSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE----------------D-QQMGDSEAMVIDGSFCTAHAKKQTI 163 (199)
Q Consensus 107 fv~dy---~~plak~~~~~p~~~~rFel~i~G~E----------------~-~~~g~~~~~~~d~~yl~a~~~G~pP 163 (199)
..+|| --+|-+..+ .|.++--=|||+.|.| + ...|.....+ ..|.+..-+||+||
T Consensus 231 idiDyqkLhdaFFk~qt-kp~lt~~Ge~yyegke~e~~~k~k~PG~iS~eLr~aLgmp~g~p-PPWl~aMqryGpPp 305 (500)
T KOG2330|consen 231 IDIDYQKLHDAFFKWQT-KPYLTKFGELYYEGKELEAMVKEKKPGDISDELRIALGMPVGTP-PPWLIAMQRYGPPP 305 (500)
T ss_pred ccchHHHHHHHHHhcCC-CcceeecceeeecchhHHHHHhhcCccchhHHHHHHhCCCCCCC-ChHHHHhhhcCCCC
Confidence 44666 224433222 4567766799999997 1 1234433322 37888888999997
No 120
>PLN02734 glycyl-tRNA synthetase
Probab=40.31 E-value=14 Score=36.12 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=18.7
Q ss_pred eEEeccccccCCCC---CCCchHHHH
Q 048360 24 LCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 24 VfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
+-|||++||||=+- --..-||+|
T Consensus 278 ~AQIGk~FRNEIsPR~gl~R~REF~q 303 (684)
T PLN02734 278 AAQIGQAFRNEISPRQGLLRVREFTL 303 (684)
T ss_pred eeeccHhhhcccCcccceeeechhhh
Confidence 68999999999543 346789999
No 121
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=38.68 E-value=15 Score=34.67 Aligned_cols=14 Identities=7% Similarity=-0.052 Sum_probs=11.3
Q ss_pred C-cceecHHHHHHHh
Q 048360 164 S-YFATLIDGVSFVT 177 (199)
Q Consensus 164 h-G~giGleRl~~l~ 177 (199)
| ||++|+|||+.++
T Consensus 442 ~~Gfa~gieRli~~l 456 (563)
T TIGR00418 442 HRAILGSIERFIAIL 456 (563)
T ss_pred EeeccCcHHHHHHHH
Confidence 7 9999999987333
No 122
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.32 E-value=18 Score=33.36 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=19.7
Q ss_pred HHHHHHhcCC-CCC-cceecHHHHHHHhCCCcc
Q 048360 152 SFCTAHAKKQ-TIS-YFATLIDGVSFVTETKER 182 (199)
Q Consensus 152 ~yl~a~~~G~-pPh-G~giGleRl~~l~g~~~i 182 (199)
..++-+- |- -|+ |||||+|||+.++....+
T Consensus 297 ~Lv~~~g-G~~~pavGFaiGveRl~~~l~~~~~ 328 (429)
T COG0124 297 GLVEEFG-GKPTPAVGFAIGVERLILALEEEGK 328 (429)
T ss_pred HHHHHhC-CCCCCceeEehHHHHHHHHHHHcCC
Confidence 3444443 33 378 999999998866555543
No 123
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=38.15 E-value=18 Score=34.30 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=18.3
Q ss_pred eEEeccccccCCCC---CCCchHHHH
Q 048360 24 LCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 24 VfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
|-|||++||||-+- --..-||+|
T Consensus 168 iaQIGk~FRNEIsPr~~l~R~REF~q 193 (539)
T PRK14894 168 IAQVGKAFRNEINPRNFLFRVREFEQ 193 (539)
T ss_pred EEeeeccccCccCCCCceeecccchh
Confidence 78999999999542 235679999
No 124
>PLN02972 Histidyl-tRNA synthetase
Probab=37.89 E-value=13 Score=36.79 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.7
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.||+|||.|....-+.-||++
T Consensus 418 ~KrYyiG~VFR~e~pqkGR~REF~Q 442 (763)
T PLN02972 418 FKRYQIAKVYRRDNPSKGRYREFYQ 442 (763)
T ss_pred ceEEEeccEEecCCCCCCCCccceE
Confidence 4788899999999876556779988
No 125
>PLN02972 Histidyl-tRNA synthetase
Probab=36.61 E-value=18 Score=35.86 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~ 177 (199)
+.+..|.---.|+ ||++|+|||+.++
T Consensus 627 ~Lv~~FgG~~vPAVGFSiGIERL~~~L 653 (763)
T PLN02972 627 NLVGMFSGKQVPAVGVSLGIERVFAIM 653 (763)
T ss_pred hHHHhcCCCCCCEEEEEecHHHHHHHH
Confidence 4555552113478 9999999988444
No 126
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=36.35 E-value=13 Score=35.38 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.6
Q ss_pred ceEEeccccccCCCC---CCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
-|-|||++||||=+- --..-||+|
T Consensus 185 giaQiGk~fRNEIsPr~~l~R~REF~q 211 (551)
T TIGR00389 185 GVAQIGKSFRNEISPRNGLFRVREFEQ 211 (551)
T ss_pred eehhhhHhhhcccCcccceEEeehhhh
Confidence 368999999999542 235689999
No 127
>PF12109 CXCR4_N: CXCR4 Chemokine receptor N terminal; InterPro: IPR022726 This entry represents the N-terminal region of the CXC type 4 chemokine receptor. CXCR4 and its ligand stromal cell-derived factor-1 (a.k.a. CXCL12) are essential for proper fetal development. CXCR4 is also the major coreceptor for T-tropic strains of Human immunodeficiency virus 1, and SDF-1 inhibits HIV-1 infection. Additionally, SDF-1 and CXCR4 mediate cancer cell migration and metastasis. The N-terminal domain of most chemokine receptors is the ligand binding domain and so the N-terminal domain of CXCR4 is the binding site for SDF-1 [].; PDB: 3OE9_B 3OE0_A 3ODU_A 2K03_D 3OE8_A 2K05_D 3OE6_A 2K04_B.
Probab=32.02 E-value=16 Score=21.42 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=5.4
Q ss_pred ccccccCCCC
Q 048360 28 GKCYRNEGMD 37 (199)
Q Consensus 28 g~~FRaE~~~ 37 (199)
-||||.|+.+
T Consensus 21 EpCf~~eNad 30 (33)
T PF12109_consen 21 EPCFREENAD 30 (33)
T ss_dssp S--SS-SSSS
T ss_pred Cccccccccc
Confidence 4899999875
No 128
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=31.65 E-value=30 Score=34.80 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCceEEeccccccC---CC--CCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNE---GM--DLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE---~~--~~rHl~EFtm 46 (199)
..|+=..-+|.|+- +. +.||.+=|-|
T Consensus 53 ~~r~~~~QkCiR~nDld~VG~t~rHhTfFEM 83 (851)
T TIGR00344 53 SNRLVNAQPCIRLNDIENVGRTARHHTFFEM 83 (851)
T ss_pred CCCcccccccccccchhhhcCCCcchhhHHh
Confidence 36788888999994 33 4799999999
No 129
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=31.00 E-value=30 Score=30.05 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=16.6
Q ss_pred HHHHHHhcCCC-CC-cceecHHHHHHH
Q 048360 152 SFCTAHAKKQT-IS-YFATLIDGVSFV 176 (199)
Q Consensus 152 ~yl~a~~~G~p-Ph-G~giGleRl~~l 176 (199)
..++.+ |-+ |. ||++|+|||+.+
T Consensus 287 ~L~~~f--g~~~~AvGfa~~~d~l~~~ 311 (314)
T TIGR00443 287 NLLGRF--GRPLPATGFALNLERLLEA 311 (314)
T ss_pred HHHHHc--CCCCCCceEEecHHHHHHH
Confidence 455555 544 67 999999998743
No 130
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=31.00 E-value=19 Score=31.10 Aligned_cols=14 Identities=29% Similarity=0.197 Sum_probs=11.8
Q ss_pred CC-cceecHHHHHHH
Q 048360 163 IS-YFATLIDGVSFV 176 (199)
Q Consensus 163 Ph-G~giGleRl~~l 176 (199)
|. |||+|+|||+.+
T Consensus 264 PAvGfa~~ld~l~~~ 278 (281)
T PRK12293 264 SSSGFALYTDNLIEI 278 (281)
T ss_pred CcceEEeeHHHHHHH
Confidence 67 999999998743
No 131
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=29.80 E-value=24 Score=15.72 Aligned_cols=7 Identities=14% Similarity=-0.192 Sum_probs=4.4
Q ss_pred CC-cceec
Q 048360 163 IS-YFATL 169 (199)
Q Consensus 163 Ph-G~giG 169 (199)
|. .||+|
T Consensus 4 ~~Y~FGLG 11 (11)
T PF05953_consen 4 PMYSFGLG 11 (11)
T ss_pred CccccCcC
Confidence 44 77776
No 132
>PRK10424 ilvG operon leader peptide; Provisional
Probab=29.75 E-value=17 Score=20.87 Aligned_cols=9 Identities=11% Similarity=-0.511 Sum_probs=5.9
Q ss_pred CCCCcceec
Q 048360 161 QTISYFATL 169 (199)
Q Consensus 161 ~pPhG~giG 169 (199)
.||||.++|
T Consensus 20 ippcgaalg 28 (32)
T PRK10424 20 IPPCGAALG 28 (32)
T ss_pred ecCchhhhc
Confidence 367777666
No 133
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.87 E-value=11 Score=35.35 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEeccccccCCC---CCCCchHHHHHH
Q 048360 25 CEIGKCYRNEGM---DLTHLPELTMWM 48 (199)
Q Consensus 25 feIg~~FRaE~~---~~rHl~EFtm~l 48 (199)
-+||++||||-+ +--|--||||.-
T Consensus 213 AqiG~~fRNEISpRsGLlRvrEF~maE 239 (599)
T KOG2298|consen 213 AQIGKSFRNEISPRSGLLRVREFTMAE 239 (599)
T ss_pred HHhchHhhhccCcccCceeEEEeehHH
Confidence 479999999965 357889999933
No 134
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=28.74 E-value=24 Score=27.69 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.0
Q ss_pred CCcHHHHHHHhcCCCCCccee
Q 048360 148 VIDGSFCTAHAKKQTISYFAT 168 (199)
Q Consensus 148 ~~d~~yl~a~~~G~pPhG~gi 168 (199)
.+|.+..++|+..||++||.+
T Consensus 120 ~LD~~Lt~sfk~niP~~~f~l 140 (142)
T PF14545_consen 120 ELDNLLTESFKKNIPASGFHL 140 (142)
T ss_pred HHHHHHHHHHHhcCChhhhhc
Confidence 367899999999999998864
No 135
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=28.56 E-value=51 Score=29.41 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCCC-cceecHHHHH
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVS 174 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~ 174 (199)
..+..+.-...|. ||++|+|||+
T Consensus 284 ~L~~~f~~~~~~avGfs~~~~~l~ 307 (397)
T TIGR00442 284 GLVEELGGPPTPAVGFAIGIERLL 307 (397)
T ss_pred HHHHHhCCCCCceEEeeecHHHHH
Confidence 4455443224577 9999999987
No 136
>PLN02678 seryl-tRNA synthetase
Probab=27.98 E-value=33 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=13.3
Q ss_pred CceEEeccccccCCC
Q 048360 22 RRLCEIGKCYRNEGM 36 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~ 36 (199)
=|++++++|||+|-+
T Consensus 256 lr~~~~s~cfR~Eag 270 (448)
T PLN02678 256 IRYAGYSTCFRKEAG 270 (448)
T ss_pred ceeEEeccccccccc
Confidence 478999999999986
No 137
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=27.69 E-value=32 Score=31.29 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=17.3
Q ss_pred HHHHHHh-cCC-CCC-cceecHHHHHHHh
Q 048360 152 SFCTAHA-KKQ-TIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~-~G~-pPh-G~giGleRl~~l~ 177 (199)
+.+..+. .|. .|. ||++|+|||..++
T Consensus 301 ~L~~~f~~~~~~~pAvGfa~~~~~l~~~l 329 (423)
T PRK12420 301 NIIGAFRGDDMNYPTVGISFGLDVIYTAL 329 (423)
T ss_pred HHHHHhCCCCCCCCceeEEEcHHHHHHHH
Confidence 4566552 122 378 9999999988433
No 138
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=27.06 E-value=52 Score=29.49 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~ 177 (199)
..+..+.-.-.|. ||++|+|||+.++
T Consensus 285 ~L~~~f~~~~~pavGfs~~le~l~~~l 311 (412)
T PRK00037 285 GLVEQFGGPPTPAVGFAIGVERLLLLL 311 (412)
T ss_pred HHHHHhCCCCCceEEEEEcHHHHHHHH
Confidence 3444442114577 9999999988444
No 139
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=26.64 E-value=40 Score=34.13 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=30.8
Q ss_pred eEEEEEeecchhh------hhcCCccccCCcHHHHHHHhcCCC-CC-cceecHHHHH-HHhCCCccc
Q 048360 126 TLRLELFVNKRED------QQMGDSEAMVIDGSFCTAHAKKQT-IS-YFATLIDGVS-FVTETKERH 183 (199)
Q Consensus 126 ~~rFel~i~G~E~------~~~g~~~~~~~d~~yl~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~ 183 (199)
--++|++++|+|+ +-..+ |..| .=|| +| --|||||||+ .+.|+++.-
T Consensus 198 GPcsEi~~~glEiwnlVFmqy~~~------~g~~-----~~Lp~k~VDTG~GLER~~~v~qg~~t~y 253 (900)
T PRK13902 198 GPCFEVLVRGLELATLVFMQYKKD------GNRY-----VEMPLKIVDTGYGLERIAWASQGTPTAY 253 (900)
T ss_pred CCceeeeeCCEEeeeeeeeEEEcC------CCee-----eeCCCCeeeCCcCHHHHHHHHcCCCchH
Confidence 4588999999992 21111 1111 1155 77 9999999988 778888754
No 140
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=24 Score=33.25 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.9
Q ss_pred CceEEeccccccCCCC---CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
=++|||..+||+|... --..-||+|
T Consensus 130 l~lYQi~~kfRdE~rpr~gllR~REF~m 157 (500)
T COG0442 130 LKLYQIQSKFRDEKRPRFGLLRGREFLM 157 (500)
T ss_pred cceeeeeeEEeccccCCCCccchheeee
Confidence 4789999999999863 357789999
No 141
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=25.34 E-value=45 Score=33.63 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCceEEeccccccCC-----CCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEG-----MDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~-----~~~rHl~EFtm 46 (199)
..|+=..-+|-|+-+ .+.||.+=|-|
T Consensus 58 ~~r~~~~QkCiR~nDld~VG~t~rHhTfFEM 88 (865)
T PRK00252 58 YPRATTSQKCIRTNDLENVGYTARHHTFFEM 88 (865)
T ss_pred CCCcccccccccccchhhccCCCCchHHHHH
Confidence 367888889999953 25799999999
No 142
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.85 E-value=43 Score=33.24 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=23.6
Q ss_pred hcCCCceEEeccccccCCC---------CCCCchHHHH
Q 048360 18 AGGFRRLCEIGKCYRNEGM---------DLTHLPELTM 46 (199)
Q Consensus 18 ~~g~~rVfeIg~~FRaE~~---------~~rHl~EFtm 46 (199)
.+.+.|+...-+|-||.+. +..|.+=|-|
T Consensus 54 ~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~yHhTfFEM 91 (895)
T KOG0188|consen 54 MAKLKRAANSQKCIRAGGKHNDLDDVGKDFYHHTFFEM 91 (895)
T ss_pred hhhhHhhhhhhhHHhccCCcCChhHhchhccccCchhh
Confidence 3578999999999999753 3568888988
No 143
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=24.19 E-value=34 Score=31.75 Aligned_cols=13 Identities=8% Similarity=-0.204 Sum_probs=10.7
Q ss_pred CCC--cceecHHHHH
Q 048360 162 TIS--YFATLIDGVS 174 (199)
Q Consensus 162 pPh--G~giGleRl~ 174 (199)
-|| +.++|+||++
T Consensus 319 ~P~vi~~siGieRl~ 333 (456)
T PRK04173 319 IPYVIEPSAGLDRLL 333 (456)
T ss_pred eeEEEEecccHHHHH
Confidence 477 9999999954
No 144
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=24.19 E-value=47 Score=33.64 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=32.2
Q ss_pred eEEEEEeecchh------hhhcCCc-cccCC-cHHHHHHHhcCCC-CC-cceecHHHHH-HHhCCCccc
Q 048360 126 TLRLELFVNKRE------DQQMGDS-EAMVI-DGSFCTAHAKKQT-IS-YFATLIDGVS-FVTETKERH 183 (199)
Q Consensus 126 ~~rFel~i~G~E------~~~~g~~-~~~~~-d~~yl~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~ 183 (199)
--++|++++|+| ++-..+. ....+ |..|. =|| +| =-|||||||+ .+.|+++.-
T Consensus 194 GPcsEi~~~glEiwnlVFmq~~~~~~~~~~~~~g~~~-----~Lp~k~VDTG~GLER~~~v~qg~~t~y 257 (902)
T TIGR03683 194 GPCFEVIVGGLELATLVFMQYEEDKEGEIEIKGGRYS-----EMPLKIVDTGYGLERFVWASQGTPTAY 257 (902)
T ss_pred CCceeeeeCcEeeeeeeeeeeccccccccccCCCeee-----eCCCCceecCCCHHHHHHHHcCCCchH
Confidence 458899999999 2211110 01112 22211 155 77 9999999988 778888754
No 145
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.89 E-value=45 Score=31.12 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=19.4
Q ss_pred ceEEeccccccCCC--CCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGM--DLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~--~~rHl~EFtm 46 (199)
+-|+|+++||-+.. +.=..-||.+
T Consensus 152 kRy~iAkVyRRd~P~mtrGR~REFYQ 177 (518)
T KOG1936|consen 152 KRYHIAKVYRRDQPAMTRGRYREFYQ 177 (518)
T ss_pred eeeeEEEEEeccCchhhchhhhhhhc
Confidence 34999999999875 5556779998
No 146
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=23.87 E-value=56 Score=27.55 Aligned_cols=16 Identities=44% Similarity=0.681 Sum_probs=14.0
Q ss_pred eeeecCchHHHHHHHh
Q 048360 3 LYMRVSPELNLKRSIA 18 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~ 18 (199)
.||+.|||-..||+.-
T Consensus 158 IYLrasPetc~~Ri~~ 173 (244)
T KOG4235|consen 158 IYLRASPETCYKRIYL 173 (244)
T ss_pred EEeecChHHHHHHHHH
Confidence 5999999999999754
No 147
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=23.75 E-value=40 Score=27.11 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=11.4
Q ss_pred CceEEeccccccCC
Q 048360 22 RRLCEIGKCYRNEG 35 (199)
Q Consensus 22 ~rVfeIg~~FRaE~ 35 (199)
-|+||||+||..+.
T Consensus 79 ~~lFEiG~vf~~~~ 92 (198)
T cd00769 79 LRLFEIGRVFLKDE 92 (198)
T ss_pred EeEEEeEeEEecCC
Confidence 38999999997643
No 148
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.26 E-value=45 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.0
Q ss_pred CceEEeccccccC---CC--CCCCchHHHH
Q 048360 22 RRLCEIGKCYRNE---GM--DLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE---~~--~~rHl~EFtm 46 (199)
.|+-..-||=|+. +. +.||++=|-|
T Consensus 63 ~r~~~sQkcIR~NDieNVG~T~RHhTfFEM 92 (879)
T COG0013 63 NRAVTSQKCIRTNDIDNVGYTARHHTFFEM 92 (879)
T ss_pred CCeeccccccccCchhhcCccccchhHHHh
Confidence 5777778899985 33 5899999999
No 149
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=23.12 E-value=37 Score=32.81 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.3
Q ss_pred CceEEecc-ccccCCCC----CCCchHHHH
Q 048360 22 RRLCEIGK-CYRNEGMD----LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~-~FRaE~~~----~rHl~EFtm 46 (199)
=|+||+|+ |||+|.++ -...-||||
T Consensus 309 lr~~e~~~~~fR~E~~g~l~GL~RvReF~~ 338 (613)
T PRK03991 309 LKMYELSTYSFRLEQRGELVGLKRLRAFTM 338 (613)
T ss_pred hhhheecchheeCCCCCCCcCcccccceEe
Confidence 37899999 99999864 246678999
No 150
>PLN02530 histidine-tRNA ligase
Probab=22.11 E-value=79 Score=29.45 Aligned_cols=26 Identities=8% Similarity=-0.087 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~ 177 (199)
..+..+----.|. |||+|++||+.++
T Consensus 363 ~Li~~fgg~~~pAvGFa~g~~~l~~~l 389 (487)
T PLN02530 363 RLLSTFGGEDTPACGFGFGDAVIVELL 389 (487)
T ss_pred HHHHHhCCCCCCeeEEEEhHHHHHHHH
Confidence 4555552112367 9999999987554
No 151
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=21.09 E-value=62 Score=28.08 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=32.8
Q ss_pred eeEEEEEeecchhhhhcCC-ccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceee
Q 048360 125 LTLRLELFVNKREDQQMGD-SEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVY 186 (199)
Q Consensus 125 ~~~rFel~i~G~E~~~~g~-~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~ 186 (199)
..-.+|+.++|+|+.+.-. ..--.+| . -|.. =.--|+|||. .|.|.+||.++.
T Consensus 126 wGlGWEVWldGMEITQFTYFQQvGGi~--------~-~pv~~EITYGLERiamylQ~vd~v~dl~ 181 (283)
T PRK09348 126 WGLGWEVWLDGMEVTQFTYFQQVGGIE--------C-KPVTGEITYGLERLAMYLQGVDNVYDLV 181 (283)
T ss_pred cccceEEEECCeeeeeeeeeeeeCCee--------c-cccceeeehhHHHHHHHHhCCCceeeee
Confidence 3568999999999432211 0000111 0 2344 6667999987 899999988553
No 152
>PLN02320 seryl-tRNA synthetase
Probab=20.23 E-value=57 Score=30.84 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=13.2
Q ss_pred CceEEeccccccCCC
Q 048360 22 RRLCEIGKCYRNEGM 36 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~ 36 (199)
=|+.++|+|||+|-+
T Consensus 314 lRy~~~s~cFR~EAg 328 (502)
T PLN02320 314 LKYVAFSHCFRTEAG 328 (502)
T ss_pred ceeEEeccccccccc
Confidence 478999999999975
Done!