Query 048360
Match_columns 199
No_of_seqs 174 out of 1239
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ex5_A Lysine--tRNA ligase; st 100.0 3.5E-55 1.2E-59 403.2 9.3 188 1-188 252-522 (529)
2 3bju_A Lysyl-tRNA synthetase; 100.0 3.1E-54 1.1E-58 397.2 11.0 187 2-188 225-502 (521)
3 3a74_A Lysyl-tRNA synthetase; 100.0 3.3E-53 1.1E-57 388.2 9.7 188 2-189 223-488 (493)
4 1e1o_A Lysyl-tRNA synthetase, 100.0 3.4E-53 1.2E-57 388.9 8.9 188 2-189 232-498 (504)
5 3a5y_A GENX, putative lysyl-tR 100.0 1.3E-51 4.6E-56 363.0 12.9 174 2-189 90-341 (345)
6 3nem_A Aspartyl-tRNA synthetas 100.0 2.1E-50 7.3E-55 365.0 9.1 189 2-193 184-436 (438)
7 3i7f_A Aspartyl-tRNA synthetas 100.0 3.2E-49 1.1E-53 364.4 12.4 189 2-193 291-546 (548)
8 3m4p_A Ehasnrs, asparaginyl-tR 100.0 8.4E-49 2.9E-53 356.1 9.1 182 2-193 203-454 (456)
9 2xgt_A Asparaginyl-tRNA synthe 100.0 2.2E-47 7.5E-52 345.2 10.2 189 2-193 179-433 (435)
10 1eov_A ASPRS, aspartyl-tRNA sy 100.0 3.8E-47 1.3E-51 347.8 11.5 192 2-193 225-485 (487)
11 1wyd_A Hypothetical aspartyl-t 100.0 3E-46 1E-50 337.3 8.6 182 2-193 181-427 (429)
12 1l0w_A Aspartyl-tRNA synthetas 100.0 9.7E-46 3.3E-50 344.3 10.2 181 3-192 193-554 (580)
13 1x54_A Asparaginyl-tRNA synthe 100.0 5.9E-45 2E-49 329.3 11.5 186 2-193 182-432 (434)
14 1n9w_A Aspartyl-tRNA synthetas 100.0 1.5E-44 5E-49 325.6 9.9 176 2-188 172-413 (422)
15 1c0a_A Aspartyl tRNA synthetas 100.0 6.2E-44 2.1E-48 332.6 9.9 88 105-192 427-560 (585)
16 1nnh_A Asparaginyl-tRNA synthe 100.0 1.6E-39 5.5E-44 280.5 12.4 178 2-192 69-290 (294)
17 4ah6_A Aspartate--tRNA ligase, 100.0 5E-37 1.7E-41 286.4 11.1 82 2-90 197-289 (617)
18 3dsq_A Pyrrolysyl-tRNA synthet 98.9 4.1E-10 1.4E-14 96.4 3.5 133 3-187 125-275 (288)
19 12as_A Asparagine synthetase; 98.6 3.7E-07 1.3E-11 78.7 10.3 174 4-187 68-315 (330)
20 1b7y_A Phers, protein (phenyla 98.3 4.4E-07 1.5E-11 79.6 5.1 40 5-46 177-218 (350)
21 3qtc_A Pyrrolysyl-tRNA synthet 98.2 3.9E-07 1.3E-11 77.6 2.1 45 2-46 130-180 (290)
22 2rhq_A Phenylalanyl-tRNA synth 97.4 2.5E-05 8.4E-10 66.7 0.5 44 3-46 110-157 (294)
23 3l4g_A Phenylalanyl-tRNA synth 97.3 7E-05 2.4E-09 68.6 2.5 35 151-187 440-479 (508)
24 3pco_A Phenylalanyl-tRNA synth 92.6 0.027 9.2E-07 48.7 0.6 38 6-46 169-208 (327)
25 3cmq_A Phenylalanyl-tRNA synth 87.3 0.21 7.3E-06 44.4 1.8 38 7-46 120-157 (415)
26 3pco_A Phenylalanyl-tRNA synth 85.6 0.28 9.5E-06 42.3 1.5 37 151-189 277-319 (327)
27 1z7m_A ATP phosphoribosyltrans 84.9 0.21 7.1E-06 43.1 0.4 25 22-46 118-142 (344)
28 1qe0_A Histidyl-tRNA synthetas 84.3 0.17 6E-06 44.2 -0.3 25 22-46 102-126 (420)
29 1h4v_B Histidyl-tRNA synthetas 83.2 0.42 1.4E-05 41.8 1.7 25 22-46 102-126 (421)
30 1nyr_A Threonyl-tRNA synthetas 83.1 0.28 9.6E-06 45.7 0.5 25 22-46 355-383 (645)
31 1htt_A Histidyl-tRNA synthetas 81.0 0.41 1.4E-05 41.9 0.8 25 22-46 102-126 (423)
32 1evl_A Threonyl-tRNA synthetas 80.5 0.18 6.2E-06 44.0 -1.7 25 22-46 112-140 (401)
33 1wu7_A Histidyl-tRNA synthetas 78.3 0.49 1.7E-05 41.6 0.4 25 22-46 100-124 (434)
34 2du3_A O-phosphoseryl-tRNA syn 78.2 0.32 1.1E-05 44.7 -0.9 24 23-46 207-231 (534)
35 4e51_A Histidine--tRNA ligase; 78.2 0.49 1.7E-05 42.4 0.4 25 22-46 131-155 (467)
36 3lc0_A Histidyl-tRNA synthetas 77.5 0.53 1.8E-05 42.2 0.3 25 22-46 124-148 (456)
37 3od1_A ATP phosphoribosyltrans 77.2 0.99 3.4E-05 39.7 2.0 25 22-46 104-128 (400)
38 3od1_A ATP phosphoribosyltrans 77.2 0.53 1.8E-05 41.4 0.3 29 152-181 302-331 (400)
39 3net_A Histidyl-tRNA synthetas 74.5 1.1 3.7E-05 40.1 1.5 25 22-46 121-145 (465)
40 3lc0_A Histidyl-tRNA synthetas 74.2 0.59 2E-05 41.8 -0.2 24 152-177 322-349 (456)
41 3rac_A Histidine-tRNA ligase; 73.9 1.5 5E-05 38.2 2.2 26 21-46 117-148 (373)
42 2odr_B Phosphoseryl-tRNA synth 73.6 0.85 2.9E-05 42.7 0.7 25 22-46 225-250 (648)
43 2i4l_A Proline-tRNA ligase; al 73.4 0.48 1.6E-05 42.2 -1.0 25 22-46 150-177 (458)
44 2odr_A Phosphoseryl-tRNA synth 73.3 0.88 3E-05 42.7 0.7 25 22-46 225-250 (665)
45 2odr_D Phosphoseryl-tRNA synth 73.1 0.9 3.1E-05 42.7 0.7 25 22-46 225-250 (685)
46 2du7_A O-phosphoseryl-tRNA syn 72.9 0.91 3.1E-05 41.8 0.7 24 23-46 219-243 (549)
47 2odr_C Phosphoseryl-tRNA synth 72.6 0.94 3.2E-05 42.7 0.7 25 22-46 225-250 (701)
48 2zt5_A Glycyl-tRNA synthetase; 72.1 0.56 1.9E-05 44.3 -1.0 24 22-46 267-294 (693)
49 2dq3_A Seryl-tRNA synthetase; 69.3 0.95 3.3E-05 40.2 -0.1 25 22-46 252-283 (425)
50 3rac_A Histidine-tRNA ligase; 67.9 0.57 2E-05 40.8 -1.8 18 162-179 347-365 (373)
51 2rhq_A Phenylalanyl-tRNA synth 67.4 1.3 4.6E-05 37.1 0.5 37 151-189 237-279 (294)
52 1z7m_A ATP phosphoribosyltrans 67.0 1.2 4.1E-05 38.2 0.1 25 152-178 309-335 (344)
53 1qf6_A THRRS, threonyl-tRNA sy 65.8 1.7 5.9E-05 40.4 0.9 25 22-46 353-381 (642)
54 2j3l_A Prolyl-tRNA synthetase; 65.3 0.97 3.3E-05 41.2 -0.9 25 22-46 130-157 (572)
55 1nj8_A Proline-tRNA synthetase 65.3 1.3 4.4E-05 39.6 -0.1 25 22-46 126-154 (459)
56 2du3_A O-phosphoseryl-tRNA syn 65.0 2.6 9E-05 38.6 2.0 36 151-188 311-349 (534)
57 1h4v_B Histidyl-tRNA synthetas 64.4 3 0.0001 36.2 2.2 17 162-178 300-317 (421)
58 3net_A Histidyl-tRNA synthetas 63.9 0.76 2.6E-05 41.1 -1.8 23 154-177 334-358 (465)
59 4g84_A Histidine--tRNA ligase, 63.7 2.3 7.8E-05 37.4 1.3 25 22-46 105-131 (464)
60 1usy_A ATP phosphoribosyltrans 62.5 0.76 2.6E-05 38.2 -2.0 22 22-46 71-92 (275)
61 3mf2_A BLL0957 protein; aminoa 61.6 1.6 5.5E-05 37.9 -0.1 25 22-46 169-194 (346)
62 3qtc_A Pyrrolysyl-tRNA synthet 60.2 4.2 0.00014 33.8 2.3 28 159-186 247-277 (290)
63 3cmq_A Phenylalanyl-tRNA synth 58.2 3.7 0.00013 36.3 1.7 34 151-186 260-297 (415)
64 3a32_A Probable threonyl-tRNA 57.6 1.2 4.2E-05 39.7 -1.6 25 22-46 134-162 (471)
65 1ses_A Seryl-tRNA synthetase; 57.4 4.2 0.00014 35.9 1.8 15 22-36 246-260 (421)
66 1ati_A Glycyl-tRNA synthetase; 56.6 4.1 0.00014 36.8 1.7 24 22-46 210-237 (505)
67 1hc7_A Prolyl-tRNA synthetase; 56.6 1.6 5.5E-05 39.2 -1.0 25 22-46 132-158 (477)
68 3uh0_A Threonyl-tRNA synthetas 56.1 4.1 0.00014 36.4 1.5 24 23-46 151-178 (460)
69 1wu7_A Histidyl-tRNA synthetas 52.9 4.4 0.00015 35.4 1.2 15 162-176 305-320 (434)
70 1htt_A Histidyl-tRNA synthetas 52.2 4.6 0.00016 35.0 1.2 14 163-176 300-314 (423)
71 4g85_A Histidine-tRNA ligase, 51.1 4.9 0.00017 36.1 1.3 25 22-46 158-184 (517)
72 3ikl_A DNA polymerase subunit 49.6 5 0.00017 36.0 1.0 24 23-46 175-204 (459)
73 2cja_A Seryl-tRNA synthetase; 49.3 5.7 0.00019 36.2 1.4 23 23-46 346-373 (522)
74 1nj1_A PROR, proline-tRNA synt 47.6 6.4 0.00022 35.5 1.4 25 22-46 158-186 (501)
75 2i4l_A Proline-tRNA ligase; al 45.1 6.1 0.00021 35.0 0.9 14 161-174 329-344 (458)
76 2dq0_A Seryl-tRNA synthetase; 44.7 8 0.00027 34.5 1.6 15 22-36 273-287 (455)
77 4e51_A Histidine--tRNA ligase; 43.6 12 0.0004 33.3 2.5 26 152-177 317-343 (467)
78 4g85_A Histidine-tRNA ligase, 43.6 5.1 0.00017 36.0 0.1 26 152-177 376-404 (517)
79 4g84_A Histidine--tRNA ligase, 42.5 3.3 0.00011 36.4 -1.3 15 163-177 336-351 (464)
80 1qe0_A Histidyl-tRNA synthetas 41.9 7.3 0.00025 33.6 0.9 23 153-177 292-317 (420)
81 2j3l_A Prolyl-tRNA synthetase; 41.4 7.5 0.00026 35.3 0.9 24 151-174 416-449 (572)
82 3err_A Fusion protein of micro 38.6 11 0.00038 34.4 1.6 15 22-36 355-369 (536)
83 3l4g_B Phenylalanyl-tRNA synth 37.3 7.3 0.00025 35.9 0.1 22 23-44 473-494 (589)
84 1yfs_A Alanyl-tRNA synthetase; 36.6 12 0.00042 33.6 1.4 26 21-46 59-93 (465)
85 3lss_A Seryl-tRNA synthetase; 36.4 13 0.00044 33.6 1.6 33 3-36 264-304 (484)
86 3vbb_A Seryl-tRNA synthetase, 35.7 13 0.00045 33.9 1.5 14 23-36 293-306 (522)
87 3hy0_A Alanyl-tRNA synthetase; 35.3 13 0.00045 33.2 1.4 26 21-46 58-92 (441)
88 3ig2_A Phenylalanyl-tRNA synth 34.6 12 0.00039 29.6 0.9 13 23-35 85-97 (213)
89 1wle_A Seryl-tRNA synthetase; 34.0 12 0.00042 33.8 1.0 15 22-36 303-317 (501)
90 3ial_A Prolyl-tRNA synthetase; 33.9 14 0.00048 33.6 1.4 25 22-46 143-170 (518)
91 2du7_A O-phosphoseryl-tRNA syn 33.9 23 0.00079 32.5 2.8 33 151-185 315-350 (549)
92 4hvc_A Bifunctional glutamate/ 33.6 14 0.0005 33.5 1.4 25 22-46 149-176 (519)
93 3qne_A Seryl-tRNA synthetase, 32.8 15 0.0005 33.2 1.3 14 23-36 270-283 (485)
94 2zze_A Alanyl-tRNA synthetase; 31.4 19 0.00064 34.4 1.8 21 163-183 245-267 (752)
95 3ica_A Phenylalanyl-tRNA synth 31.0 12 0.00042 29.4 0.5 16 20-35 80-97 (213)
96 1g5h_A Mitochondrial DNA polym 27.0 17 0.00058 32.3 0.7 25 22-46 164-194 (454)
97 2ztg_A Alanyl-tRNA synthetase; 25.9 22 0.00074 33.9 1.2 54 125-184 197-262 (739)
98 2odr_B Phosphoseryl-tRNA synth 24.3 36 0.0012 31.9 2.3 34 151-186 322-358 (648)
99 2rhq_B Phenylalanyl-tRNA synth 24.0 19 0.00065 34.4 0.5 43 126-175 649-692 (795)
100 2odr_A Phosphoseryl-tRNA synth 23.7 37 0.0013 31.9 2.3 34 151-186 322-358 (665)
101 2odr_D Phosphoseryl-tRNA synth 23.5 37 0.0013 31.9 2.3 34 151-186 322-358 (685)
102 2odr_C Phosphoseryl-tRNA synth 22.9 39 0.0013 31.9 2.3 33 151-185 322-357 (701)
103 1fme_A FSD-EY peptide; beta-BE 21.7 17 0.00058 19.2 -0.2 8 28-35 9-16 (28)
No 1
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=3.5e-55 Score=403.19 Aligned_cols=188 Identities=31% Similarity=0.504 Sum_probs=147.8
Q ss_pred CceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------H---HHHHHHHhhHHHhcCCC-C
Q 048360 1 MELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------W---MVMELKGSCKIRYHSNG-P 65 (199)
Q Consensus 1 ~~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~---l~~~i~~~~~~~~~~~~-~ 65 (199)
+++||+||||||||+|++||++||||||||||||++++|||||||| + ++++++..+........ .
T Consensus 252 ~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~ 331 (529)
T 4ex5_A 252 MEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATI 331 (529)
T ss_dssp EEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEE
T ss_pred cceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCce
Confidence 3689999999999999999999999999999999999999999999 2 22232222211111100 0
Q ss_pred CCCCccccCCCCceeeeHHHHHHhhcC-CC--------------------CCH----H-----HH----hccc------c
Q 048360 66 ENEPIEIDFMPPFRKLDMIAEMERPAN-IC--------------------MPK----I-----FL----LMLL------P 105 (199)
Q Consensus 66 ~~~~~~~~~~~p~~rity~ea~~~~~G-~~--------------------~~~----~-----~L----~~li------p 105 (199)
......++++.||+|+||.||++++.| ++ ... + .+ ..++ |
T Consensus 332 ~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P 411 (529)
T 4ex5_A 332 QYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEP 411 (529)
T ss_dssp EETTEEEETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSC
T ss_pred ecCceeeccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCC
Confidence 012235678899999999999998776 32 111 1 11 1111 9
Q ss_pred hhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhc
Q 048360 106 KLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAK 159 (199)
Q Consensus 106 ~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~ 159 (199)
|||||| +|||||++++||++|+|||||++|.| .+..|+++++.+|+|||+|++|
T Consensus 412 ~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aley 491 (529)
T 4ex5_A 412 TFIIDYPIEVSPLARESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEY 491 (529)
T ss_dssp EEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHT
T ss_pred EEEECCchhhCCCcccCCCCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHc
Confidence 999999 99999999999999999999999999 1345677888899999999999
Q ss_pred CCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 160 KQTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 160 G~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
||||| |||||||||+ ++||++||++|++.
T Consensus 492 G~PP~gG~GlGiDRLvMlltg~~~IRdVi~F 522 (529)
T 4ex5_A 492 GMPPTGGCGIGIDRLVMLLTDSPTIRDVLLF 522 (529)
T ss_dssp CCCCEEEEEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred CCCCCcEEEEeHHHHHHHHcCCCcHHHeecC
Confidence 99999 9999999965 99999999988765
No 2
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=3.1e-54 Score=397.22 Aligned_cols=187 Identities=44% Similarity=0.739 Sum_probs=149.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------H---HHHHHHHhh--------HHH
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------W---MVMELKGSC--------KIR 59 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~---l~~~i~~~~--------~~~ 59 (199)
++||+||||||||+|++||++||||||||||||++++|||||||| + ++++++..+ .+.
T Consensus 225 ~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~ 304 (521)
T 3bju_A 225 NLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVT 304 (521)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred ceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 689999999999999999999999999999999999999999999 2 222222221 112
Q ss_pred hcCCCCCCCCccccCCCCceeeeHHHHHHhhcCCCCCH-------H---HH-------------------------hcc-
Q 048360 60 YHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK-------I---FL-------------------------LML- 103 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~-------~---~L-------------------------~~l- 103 (199)
|.....+.....+++..||+|+||.||++++.|+++.. + .| .++
T Consensus 305 ~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~v 384 (521)
T 3bju_A 305 YHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFL 384 (521)
T ss_dssp ECTTCTTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHT
T ss_pred ecccccccccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 22211111223567788999999999999998876531 0 10 011
Q ss_pred ----c-chhhccc---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHH
Q 048360 104 ----L-PKLSTDH---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGS 152 (199)
Q Consensus 104 ----i-p~fv~dy---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~ 152 (199)
. |+||||| ++||||++++||++++|||||++|.| .++.|+++++++|+|
T Consensus 385 e~~l~~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~ 464 (521)
T 3bju_A 385 EVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDEN 464 (521)
T ss_dssp GGGCCSCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHH
T ss_pred HHhcCCcEEEECCccccCcccccCCCCCCeeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHH
Confidence 1 9999999 89999999999999999999999998 134477788889999
Q ss_pred HHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 153 FCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 153 yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
||+|++|||||| |||||+|||+ ++||++||++|+++
T Consensus 465 yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~F 502 (521)
T 3bju_A 465 FCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLF 502 (521)
T ss_dssp HHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSS
T ss_pred HHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecC
Confidence 999999999999 9999999965 99999999977664
No 3
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=3.3e-53 Score=388.20 Aligned_cols=188 Identities=29% Similarity=0.437 Sum_probs=148.1
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------H---HHHHHHHhhHHHhcCCC-CC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------W---MVMELKGSCKIRYHSNG-PE 66 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~---l~~~i~~~~~~~~~~~~-~~ 66 (199)
++||+||||||||+|++||++||||||||||||++++|||||||| + ++++++..+........ ..
T Consensus 223 ~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~ 302 (493)
T 3a74_A 223 TLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQ 302 (493)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEE
T ss_pred eeEEecCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEe
Confidence 589999999999999999999999999999999999999999999 2 22233222211111100 00
Q ss_pred CCCccccCCCCceeeeHHHHHHhhcCCCC-C---HH-----------------HHhc--------cc------chhhccc
Q 048360 67 NEPIEIDFMPPFRKLDMIAEMERPANICM-P---KI-----------------FLLM--------LL------PKLSTDH 111 (199)
Q Consensus 67 ~~~~~~~~~~p~~rity~ea~~~~~G~~~-~---~~-----------------~L~~--------li------p~fv~dy 111 (199)
.....++++.||+|+||.||++++.|+|+ . .+ .+++ ++ |+|||||
T Consensus 303 ~~~~~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fv~dy 382 (493)
T 3a74_A 303 YGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGH 382 (493)
T ss_dssp ETTEEEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECC
T ss_pred eCCEeeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcccCCcEEEECC
Confidence 01234567889999999999999988765 1 11 0111 11 9999999
Q ss_pred ---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCCCC-
Q 048360 112 ---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS- 164 (199)
Q Consensus 112 ---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh- 164 (199)
++||||++++||++++|||||++|+| .+..++++++++|+|||+|++||||||
T Consensus 383 P~~~~pf~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhg 462 (493)
T 3a74_A 383 PVEISPLAKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTG 462 (493)
T ss_dssp BGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEE
T ss_pred CcccCCccCcCCCCCCeEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCce
Confidence 89999999999999999999999999 123467677889999999999999999
Q ss_pred cceecHHHHH-HHhCCCccceeeecC
Q 048360 165 YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
|||||+|||+ +++|++||++|+|.-
T Consensus 463 G~glGiDRLvmlltg~~~IRdVi~FP 488 (493)
T 3a74_A 463 GLGIGVDRLVMLLTNSPSIRDVLLFP 488 (493)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGTSSSC
T ss_pred eEEEcHHHHHHHHhCCCcHHhEeccC
Confidence 9999999965 999999999887653
No 4
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.4e-53 Score=388.90 Aligned_cols=188 Identities=31% Similarity=0.439 Sum_probs=146.7
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------H---HHHHHHHhhHHHhcCCC-CC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------W---MVMELKGSCKIRYHSNG-PE 66 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~---l~~~i~~~~~~~~~~~~-~~ 66 (199)
++||+||||||||+|++||++||||||||||||++++|||||||| + ++++++..+........ ..
T Consensus 232 ~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~ 311 (504)
T 1e1o_A 232 DMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT 311 (504)
T ss_dssp EEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred eEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 689999999999999999999999999999999999999999999 2 22232222211111100 00
Q ss_pred CCCccccCCCCceeeeHHHHHHhhcC-CCCCH----HH-----------------Hh--------ccc------chhhcc
Q 048360 67 NEPIEIDFMPPFRKLDMIAEMERPAN-ICMPK----IF-----------------LL--------MLL------PKLSTD 110 (199)
Q Consensus 67 ~~~~~~~~~~p~~rity~ea~~~~~G-~~~~~----~~-----------------L~--------~li------p~fv~d 110 (199)
.....++++.||+|+||.||++++.| +++.. +. ++ .++ |+||||
T Consensus 312 ~~~~~i~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fV~d 391 (504)
T 1e1o_A 312 YGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE 391 (504)
T ss_dssp ETTEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEEC
T ss_pred eCCEeeccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCCeEEEEC
Confidence 01233567889999999999999988 65421 10 11 111 999999
Q ss_pred c---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCCCC
Q 048360 111 H---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS 164 (199)
Q Consensus 111 y---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh 164 (199)
| ++||||++++||++++|||||++|+| .+..++++++++|+|||+|++||||||
T Consensus 392 yP~~~~pf~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPh 471 (504)
T 1e1o_A 392 YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPT 471 (504)
T ss_dssp CBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSE
T ss_pred CCcccCcCcCCCCCCCCceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCc
Confidence 9 89999999999999999999999999 123467777889999999999999999
Q ss_pred -cceecHHHHH-HHhCCCccceeeecC
Q 048360 165 -YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 165 -G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
|||||+|||+ +++|++||++|+|+-
T Consensus 472 gG~glGiDRLvmlltg~~~IRdVi~FP 498 (504)
T 1e1o_A 472 AGLGIGIDRMIMLFTNSHTIRDVILFP 498 (504)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGTSSSC
T ss_pred eeEEEcHHHHHHHHhCCCcHHhEeccC
Confidence 9999999965 999999999887653
No 5
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=1.3e-51 Score=363.03 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=139.7
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPI 70 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~ 70 (199)
++||+||||||||+|+++|++||||||||||||++++|||||||| +++..+-+.++....
T Consensus 90 ~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~--------- 160 (345)
T 3a5y_A 90 NLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD--------- 160 (345)
T ss_dssp EEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC---------
T ss_pred CEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc---------
Confidence 489999999999999999999999999999999999999999999 233322222222221
Q ss_pred cccCCCCceeeeHHHHHHhhcCCCCC-----------------------HH-------HHhcc-------c-chhhccc-
Q 048360 71 EIDFMPPFRKLDMIAEMERPANICMP-----------------------KI-------FLLML-------L-PKLSTDH- 111 (199)
Q Consensus 71 ~~~~~~p~~rity~ea~~~~~G~~~~-----------------------~~-------~L~~l-------i-p~fv~dy- 111 (199)
..||+|+||.||+++++|+|.. .+ .+.+. . |+|||||
T Consensus 161 ----~~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP 236 (345)
T 3a5y_A 161 ----CPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFP 236 (345)
T ss_dssp ----CCCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGGGSSSSSCEEEECCB
T ss_pred ----CCCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 1389999999999988765421 01 11111 2 8999999
Q ss_pred --CCCcccccCCCCceeEEEEEeecchh-----------------------hhh-cCCccccCCcHHHHHHHhcCCCCC-
Q 048360 112 --MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQ-MGDSEAMVIDGSFCTAHAKKQTIS- 164 (199)
Q Consensus 112 --~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~-~g~~~~~~~d~~yl~a~~~G~pPh- 164 (199)
++||+|++++||++++|||||++|+| .++ .|. +..++|+|||+|++||+|||
T Consensus 237 ~~~~~~~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~-~~~~~d~~yl~al~yG~PPhg 315 (345)
T 3a5y_A 237 ASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGL-PQHPIDQNLIEALKVGMPDCS 315 (345)
T ss_dssp GGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHCCCSEE
T ss_pred hhhChhhCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHhcCCCCCc
Confidence 89999999999999999999999998 111 244 45678899999999999999
Q ss_pred cceecHHHHH-HHhCCCccceeeecC
Q 048360 165 YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 165 G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
|||||+|||+ +++|.+||++|+|.-
T Consensus 316 G~glGiDRLvmll~g~~~IRdVi~FP 341 (345)
T 3a5y_A 316 GVALGVDRLVMLALGAETLAEVIAFS 341 (345)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGGSSSC
T ss_pred EEEEcHHHHHHHHcCCCcHheEecCC
Confidence 9999999965 999999999888753
No 6
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.1e-50 Score=365.01 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=140.8
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------H---H----HHHHHHhhHHHhc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------W---M----VMELKGSCKIRYH 61 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------~---l----~~~i~~~~~~~~~ 61 (199)
++||+||||||||+|+++|++||||||||||||+++ +|||||||| + + ++.++..+.-...
T Consensus 184 ~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~ 263 (438)
T 3nem_A 184 DAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNA 263 (438)
T ss_dssp EEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 589999999999999999999999999999999996 799999999 1 1 2222222110000
Q ss_pred CCCCCCCCcccc-CCCCceeeeHHHHHHhh--cCCCCC------HH---HHhccc-------chhhccc---CCCc-ccc
Q 048360 62 SNGPENEPIEID-FMPPFRKLDMIAEMERP--ANICMP------KI---FLLMLL-------PKLSTDH---MSPL-AKG 118 (199)
Q Consensus 62 ~~~~~~~~~~~~-~~~p~~rity~ea~~~~--~G~~~~------~~---~L~~li-------p~fv~dy---~~pl-ak~ 118 (199)
.+. ......++ ++.||+|+||.||++.+ .|+++. .+ .|.+.+ |+||||| ++|| +|+
T Consensus 264 ~~l-~~~~~~l~~~~~pf~rity~eai~~l~~~g~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~ 342 (438)
T 3nem_A 264 KEL-DILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMK 342 (438)
T ss_dssp HHH-HHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCB
T ss_pred hhH-hhcccccccCCCCceEEEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCcccccc
Confidence 000 00001122 35799999999999853 465443 21 344432 9999999 8999 899
Q ss_pred cCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCC
Q 048360 119 HRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTET 179 (199)
Q Consensus 119 ~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~ 179 (199)
+++||++++|||||++|.| .++.|.++. .++|||+|++|||||| |||||+|||+ +++|.
T Consensus 343 ~~~~p~~~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~g~~~~--~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~ 420 (438)
T 3nem_A 343 YDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE--SFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDL 420 (438)
T ss_dssp CTTSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGG--GGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTC
T ss_pred CCCCCCceEEEEEEECCEEEEeCeeecCCHHHHHHHHHHcCCChh--HHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCC
Confidence 9999999999999999999 234455332 2389999999999999 9999999965 99999
Q ss_pred Ccccee--eecCCCcc
Q 048360 180 KERHLV--YARAHRGY 193 (199)
Q Consensus 180 ~~i~~v--~~~~~~~~ 193 (199)
+||++| |||+++.+
T Consensus 421 ~~Irdvi~FPr~~~rl 436 (438)
T 3nem_A 421 PNIREVILFPRDRRRL 436 (438)
T ss_dssp SCGGGGSSSCCCSSCC
T ss_pred CcHHHcccCCCCccCC
Confidence 999955 66776654
No 7
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.2e-49 Score=364.37 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=141.8
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCC-CCCCchHHHH-------------------HHHHHHHHhhHHHhc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM-DLTHLPELTM-------------------WMVMELKGSCKIRYH 61 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~-~~rHl~EFtm-------------------~l~~~i~~~~~~~~~ 61 (199)
++||+||||||||+|+++|++||||||||||||++ ++|||||||| +|++.++..+...+.
T Consensus 291 ~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~ 370 (548)
T 3i7f_A 291 KAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFP 370 (548)
T ss_dssp -CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999998 4899999999 122223222211110
Q ss_pred CCC----CCCCCccccCCCCceeeeHHHHHHhh--cCCCCCH------H---HHhccc-------chhhccc---CCCc-
Q 048360 62 SNG----PENEPIEIDFMPPFRKLDMIAEMERP--ANICMPK------I---FLLMLL-------PKLSTDH---MSPL- 115 (199)
Q Consensus 62 ~~~----~~~~~~~~~~~~p~~rity~ea~~~~--~G~~~~~------~---~L~~li-------p~fv~dy---~~pl- 115 (199)
.+. ...+...+++ .||+|+||.||++.+ .|+++.. + .|++++ ++||+|| ++||
T Consensus 371 ~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfY 449 (548)
T 3i7f_A 371 DELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFY 449 (548)
T ss_dssp HHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTT
T ss_pred HHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchh
Confidence 000 0000112233 799999999999865 5765432 1 444443 3567899 8999
Q ss_pred ccccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HH
Q 048360 116 AKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FV 176 (199)
Q Consensus 116 ak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l 176 (199)
+|++++||++++|||||++|.| .++.|.++. .|+|||+|++|||||| |||||||||+ ++
T Consensus 450 ak~~~~dp~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~--~~e~yl~al~yG~PPhgG~GlGiDRLvMll 527 (548)
T 3i7f_A 450 TMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPA--TLKDYIESFRFGSWPHAGCGIGLERITMLY 527 (548)
T ss_dssp BCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHHHHHHHHTTCCGG--GGHHHHHTTSSCCCCEEEEEEEHHHHHHHH
T ss_pred hccCCCCCCeEEEEEEEECCEEEeeCeeecCCHHHHHHHHHHcCCChH--HHHHHHHHHhCCCCCceEEEEcHHHHHHHH
Confidence 6889999999999999999999 235565444 3689999999999999 9999999965 99
Q ss_pred hCCCccce--eeecCCCcc
Q 048360 177 TETKERHL--VYARAHRGY 193 (199)
Q Consensus 177 ~g~~~i~~--v~~~~~~~~ 193 (199)
+|.+||++ .|||+++.+
T Consensus 528 tg~~nIRdVi~FPR~p~rl 546 (548)
T 3i7f_A 528 LGIPNIRKVTLFPRDPIRL 546 (548)
T ss_dssp TTCSCGGGGSSSCCBTTBC
T ss_pred hCCccHHHhhcCCCCCCCC
Confidence 99999995 578888765
No 8
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=8.4e-49 Score=356.13 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=137.2
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------H-------HHHHHHHhh----HH
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------W-------MVMELKGSC----KI 58 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~-------l~~~i~~~~----~~ 58 (199)
++||+||||||||++++ |++||||||||||||+++ +|||||||| + |++.++..+ ..
T Consensus 203 ~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~ 281 (456)
T 3m4p_A 203 PAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGD 281 (456)
T ss_dssp EEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 58999999999999876 699999999999999985 899999999 2 222222211 11
Q ss_pred HhcCCCCCCCCcccc---CCCCceeeeHHHHHHhh--cCCCC-----------CHH---HHhccc--chhhccc---CCC
Q 048360 59 RYHSNGPENEPIEID---FMPPFRKLDMIAEMERP--ANICM-----------PKI---FLLMLL--PKLSTDH---MSP 114 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~---~~~p~~rity~ea~~~~--~G~~~-----------~~~---~L~~li--p~fv~dy---~~p 114 (199)
.+.. ...+ +..||+|+||.||++.+ .|++. ... .+.+.+ |+||+|| ++|
T Consensus 282 ~~~~-------~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~~~P~fv~~yP~~~~p 354 (456)
T 3m4p_A 282 KIRK-------MNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEIGCPIFMIHFPSKMKA 354 (456)
T ss_dssp HHHH-------HCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHHTSCEEEECCBGGGSC
T ss_pred hHhh-------cCcccccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHhCceEEEECCCchhCc
Confidence 1111 1112 35699999999999854 35432 111 333333 9999999 899
Q ss_pred c-ccccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH
Q 048360 115 L-AKGHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS 174 (199)
Q Consensus 115 l-ak~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~ 174 (199)
| +|++++||++++|||||++|+ | .++.|.++. .. +|||++++|||||| |||||+|||+
T Consensus 355 fy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~-~~-~~yld~~~~G~pP~gG~GlGidRLv 432 (456)
T 3m4p_A 355 FYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPD-PY-YWYTQQRKYGSCPHGGYGLGVERLV 432 (456)
T ss_dssp TTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCG-GG-HHHHGGGTSSCCCEEEEEEEHHHHH
T ss_pred cccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHH-HH-HHHHHHHHcCCCcccEEEEcHHHHH
Confidence 7 789999999999999999997 7 234444332 22 79999999999999 9999999965
Q ss_pred -HHhCCCcccee--eecCCCcc
Q 048360 175 -FVTETKERHLV--YARAHRGY 193 (199)
Q Consensus 175 -~l~g~~~i~~v--~~~~~~~~ 193 (199)
+++|.+||++| |||+++.+
T Consensus 433 m~ltg~~~Irdvi~FPr~~~r~ 454 (456)
T 3m4p_A 433 MWLLGEDHIRKVCLYPRYLERC 454 (456)
T ss_dssp HHHHTCSCGGGGSSSCBBTTBC
T ss_pred HHHcCCccHHHeeccCCCCCCC
Confidence 99999999954 67887764
No 9
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.2e-47 Score=345.24 Aligned_cols=189 Identities=17% Similarity=0.192 Sum_probs=135.6
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------HH---HHHHHHhhHHHhcCCCC-
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------WM---VMELKGSCKIRYHSNGP- 65 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~~- 65 (199)
++||+||||||||++++ |++||||||||||||+++ +|||||||| ++ +++++..+.........
T Consensus 179 ~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~ 257 (435)
T 2xgt_A 179 QSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEA 257 (435)
T ss_dssp EEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred ccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 57999999999999875 799999999999999986 799999999 22 22222211100000000
Q ss_pred --CCCCccccC---CCCceeeeHHHHHHhhc--CCC------------CCHH---HHhccc--chhhccc---CCCc-cc
Q 048360 66 --ENEPIEIDF---MPPFRKLDMIAEMERPA--NIC------------MPKI---FLLMLL--PKLSTDH---MSPL-AK 117 (199)
Q Consensus 66 --~~~~~~~~~---~~p~~rity~ea~~~~~--G~~------------~~~~---~L~~li--p~fv~dy---~~pl-ak 117 (199)
......+++ ..||+|+||.||++.+. |++ +... .|.+.+ |+||+|| ++|| ||
T Consensus 258 ~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fv~d~P~~~~~f~a~ 337 (435)
T 2xgt_A 258 KKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQ 337 (435)
T ss_dssp HHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBC
T ss_pred hhhhhhccccccccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhcCCcEEEECCChhhCcccCC
Confidence 000011222 36999999999998653 322 1111 333333 9999999 8997 78
Q ss_pred ccCCCCceeEEEEEeecch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHh
Q 048360 118 GHRSKPGLTLRLELFVNKR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVT 177 (199)
Q Consensus 118 ~~~~~p~~~~rFel~i~G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~ 177 (199)
.+++||++++|||||++|+ | .++.|.++.. . +|||+|++||+||| |||||+|||+ +++
T Consensus 338 ~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~-~-~~yl~a~~yG~pPhgG~glGiDRLvmll~ 415 (435)
T 2xgt_A 338 RDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKP-Y-YWYLDQRLYGTCPHGGYGLGLERFICWLT 415 (435)
T ss_dssp BCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGG-G-HHHHHHHHSSCCCEEEEEEEHHHHHHHHH
T ss_pred CCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHH-H-HHHHHHHhCCCCCCceEEEhHHHHHHHHc
Confidence 8889999999999999997 7 2344554433 2 79999999999999 9999999965 999
Q ss_pred CCCcccee--eecCCCcc
Q 048360 178 ETKERHLV--YARAHRGY 193 (199)
Q Consensus 178 g~~~i~~v--~~~~~~~~ 193 (199)
|.+||++| |||.++.+
T Consensus 416 g~~~Irdvi~FPr~~~~~ 433 (435)
T 2xgt_A 416 NTNHIRDVCLYPRFVGRC 433 (435)
T ss_dssp TCSCGGGGSSSCCBTTBC
T ss_pred CCCcHHhEecccCCcCCC
Confidence 99999955 55555543
No 10
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=3.8e-47 Score=347.82 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=142.2
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-------------------HHHHHHHHhhHHHhc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-------------------WMVMELKGSCKIRYH 61 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-------------------~l~~~i~~~~~~~~~ 61 (199)
++||+||||||+|+++++|++||||||||||||+++ .||+||||| +|++.++..+.-.+.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 589999999999999999999999999999999985 899999999 122222221110000
Q ss_pred CCC----CCCCCccccCC--CCceeeeHHHHHHh--hcCCCCCH------H---HHhccc-------chhhccc---CCC
Q 048360 62 SNG----PENEPIEIDFM--PPFRKLDMIAEMER--PANICMPK------I---FLLMLL-------PKLSTDH---MSP 114 (199)
Q Consensus 62 ~~~----~~~~~~~~~~~--~p~~rity~ea~~~--~~G~~~~~------~---~L~~li-------p~fv~dy---~~p 114 (199)
.+. .......+++. .||+|+||.||++. ..|++..+ . .|++++ |+||+|| ++|
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~p 384 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRP 384 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSC
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccCh
Confidence 000 00001122333 38999999999974 35654322 1 444433 5789999 899
Q ss_pred c-ccccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-
Q 048360 115 L-AKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS- 174 (199)
Q Consensus 115 l-ak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~- 174 (199)
| +|++++||++++|||||++|.| .++.|.++..+.++|||+|++||+||| |||||+|||+
T Consensus 385 fy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvm 464 (487)
T 1eov_A 385 FYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 464 (487)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHH
T ss_pred hhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHH
Confidence 8 7999999999999999999999 345566555456799999999999999 9999999965
Q ss_pred HHhCCCcccee--eecCCCcc
Q 048360 175 FVTETKERHLV--YARAHRGY 193 (199)
Q Consensus 175 ~l~g~~~i~~v--~~~~~~~~ 193 (199)
+++|++|||+| |||.++.+
T Consensus 465 ll~g~~~IRdVi~FPr~~~r~ 485 (487)
T 1eov_A 465 FYLDLKNIRRASLFPRDPKRL 485 (487)
T ss_dssp HHTTCSSGGGGCSSCCBTTBC
T ss_pred HHcCCCcHHheeecCCCCCCC
Confidence 99999999955 55666543
No 11
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-46 Score=337.30 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=137.6
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------H---HHH----HHHHhhH-----
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------W---MVM----ELKGSCK----- 57 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~---l~~----~i~~~~~----- 57 (199)
++||+||||+|+|+ +++|++||||||||||||+++ .||+||||| + +++ .++..+.
T Consensus 181 ~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~ 259 (429)
T 1wyd_A 181 EAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKE 259 (429)
T ss_dssp EEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred eEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchh
Confidence 57999999999999 778999999999999999986 699999999 2 222 2222111
Q ss_pred -HHhcCCCCCCCCcccc-CCCCceeeeHHHHHHhh--cCCC------CCHH---HHhccc---chhhccc---CCCc-cc
Q 048360 58 -IRYHSNGPENEPIEID-FMPPFRKLDMIAEMERP--ANIC------MPKI---FLLMLL---PKLSTDH---MSPL-AK 117 (199)
Q Consensus 58 -~~~~~~~~~~~~~~~~-~~~p~~rity~ea~~~~--~G~~------~~~~---~L~~li---p~fv~dy---~~pl-ak 117 (199)
+.+.. ..++ ++.||+|+||.||++.+ .|.+ +..+ .|.+.+ |+||+|| ++|| +|
T Consensus 260 ~l~~~~-------~~~~~l~~pf~rity~eA~~~~~~~g~~~~~~~~l~~~~e~~l~~~~~~~p~fv~d~P~~~~pfy~~ 332 (429)
T 1wyd_A 260 ELKILN-------YEPPEVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTK 332 (429)
T ss_dssp HHHHHT-------CCCCCCCSSCEEEEHHHHHHHHHHSSCCCCTTSCCCHHHHHHHHHHHCCSEEEEECCBGGGSCTTBC
T ss_pred hhhhcc-------cccccCCCCccEEEHHHHHHHHHhcCCCcccCcccCcHHHHHHHHHhccCCEEEecCChhhChhhCC
Confidence 11111 1122 25799999999999976 3433 3332 455544 9999999 8999 88
Q ss_pred ccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhC
Q 048360 118 GHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTE 178 (199)
Q Consensus 118 ~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g 178 (199)
++++||++++|||||++|+| .++.|.++. .++|||+|++||+||| |||||+|||+ +++|
T Consensus 333 ~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~--~~~~yl~al~yG~PP~~G~glGiDRLvmll~g 410 (429)
T 1wyd_A 333 SKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPE--SFEFFLKWFDYGMPPHAGFGMGLARLMVMLTG 410 (429)
T ss_dssp BCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGG--GGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHC
T ss_pred cCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChH--HHHHHHHHHhcCCCCceEEEEcHHHHHHHHcC
Confidence 99999999999999999999 234454332 2489999999999999 9999999965 9999
Q ss_pred CCccceee--ecCCCcc
Q 048360 179 TKERHLVY--ARAHRGY 193 (199)
Q Consensus 179 ~~~i~~v~--~~~~~~~ 193 (199)
.+||++|+ |+.++.+
T Consensus 411 ~~~Irdvi~FP~~~~~~ 427 (429)
T 1wyd_A 411 IQSVKEIVPFPRDKKRL 427 (429)
T ss_dssp CCCGGGTSSSCCBTTBC
T ss_pred CCcHHhEEecCCCCCCC
Confidence 99999654 5555443
No 12
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=9.7e-46 Score=344.28 Aligned_cols=181 Identities=22% Similarity=0.279 Sum_probs=132.1
Q ss_pred ee-eecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCCCCCC
Q 048360 3 LY-MRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSNGPEN 67 (199)
Q Consensus 3 ~y-L~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~~~~ 67 (199)
.| |+||||||||+||+||++||||||||||||+++++|+||||| ++ +++++..+....
T Consensus 193 ~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v------- 265 (580)
T 1l0w_A 193 FYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREA------- 265 (580)
T ss_dssp EEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH-------
T ss_pred eeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHH-------
Confidence 45 999999999999999999999999999999999999999999 22 222222221111
Q ss_pred CCccccCCCCceeeeHHHHHHhhcCC------------------------------------------------------
Q 048360 68 EPIEIDFMPPFRKLDMIAEMERPANI------------------------------------------------------ 93 (199)
Q Consensus 68 ~~~~~~~~~p~~rity~ea~~~~~G~------------------------------------------------------ 93 (199)
..+++..||+|+||.||++++.+-
T Consensus 266 --~~~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~ 343 (580)
T 1l0w_A 266 --LGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKR 343 (580)
T ss_dssp --TCCCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred --hCCccCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHH
Confidence 113456799999999999876210
Q ss_pred -------------C-CCH----------H--------------------------HHh-------c---c----c-chhh
Q 048360 94 -------------C-MPK----------I--------------------------FLL-------M---L----L-PKLS 108 (199)
Q Consensus 94 -------------~-~~~----------~--------------------------~L~-------~---l----i-p~fv 108 (199)
+ +.. + .|+ + + . |+||
T Consensus 344 ~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~~~~p~fV 423 (580)
T 1l0w_A 344 HKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWV 423 (580)
T ss_dssp TSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCCSCCEEEE
T ss_pred cCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhcccccccCeEEE
Confidence 0 000 0 011 0 1 2 9999
Q ss_pred ccc-C--------------CCcccccCC-------CC-ce-eEEEEEeecchh-----------------hhhcCC--cc
Q 048360 109 TDH-M--------------SPLAKGHRS-------KP-GL-TLRLELFVNKRE-----------------DQQMGD--SE 145 (199)
Q Consensus 109 ~dy-~--------------~plak~~~~-------~p-~~-~~rFel~i~G~E-----------------~~~~g~--~~ 145 (199)
||| + +||+|++++ || ++ ++||||+++|.| .+..|. ++
T Consensus 424 ~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee 503 (580)
T 1l0w_A 424 VDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEE 503 (580)
T ss_dssp ECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTT
T ss_pred EcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhH
Confidence 999 3 699988776 57 47 999999999999 122233 22
Q ss_pred ccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeee--cCCCc
Q 048360 146 AMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYA--RAHRG 192 (199)
Q Consensus 146 ~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~--~~~~~ 192 (199)
....++|||+|++||+||| |||||+|||+ +++|.+|||+|++ +..++
T Consensus 504 ~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~ 554 (580)
T 1l0w_A 504 QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEG 554 (580)
T ss_dssp HHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTS
T ss_pred HHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCc
Confidence 2223579999999999999 9999999965 9999999996654 44444
No 13
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=5.9e-45 Score=329.29 Aligned_cols=186 Identities=13% Similarity=0.140 Sum_probs=138.3
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------H---HHH----HHHHhhH-----
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------W---MVM----ELKGSCK----- 57 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~---l~~----~i~~~~~----- 57 (199)
++||+||||+|+|+ +++|++|||+||||||||+++ .||+||||| + +++ .++..+.
T Consensus 182 ~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~ 260 (434)
T 1x54_A 182 YAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKK 260 (434)
T ss_dssp EEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 57999999999999 678899999999999999986 699999999 2 222 2222111
Q ss_pred -HHhcCCCCCCCCccccCCCCceeeeHHHHHHhhc--CCC------CCHH---HHhccc--chhhccc---CCCc-cccc
Q 048360 58 -IRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPA--NIC------MPKI---FLLMLL--PKLSTDH---MSPL-AKGH 119 (199)
Q Consensus 58 -~~~~~~~~~~~~~~~~~~~p~~rity~ea~~~~~--G~~------~~~~---~L~~li--p~fv~dy---~~pl-ak~~ 119 (199)
+.+... ..+.. ..++.||+|+||.||++.+. |++ +..+ .|.+.+ |+||+|| ++|| +|++
T Consensus 261 ~i~~~~~--~~~~~-~~~~~pf~rity~ea~~~~~~~g~~~~~~~dl~~~~e~~l~~~~~~p~fv~d~P~~~~pfy~~~~ 337 (434)
T 1x54_A 261 EIEMFRD--DLTTL-KNTEPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTEEFDRPFFVYGYPKHIKAFYMKED 337 (434)
T ss_dssp HHHTTCS--CCHHH-HTCCSSCCEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHTTCSSCEEEEEEEGGGSCTTBCBC
T ss_pred hhhhcCc--ccccc-cccCCCCcEEEHHHHHHHHHhcCCCcccCCccChHHHHHHHHHhCCcEEEEcCChhhCcccCCcC
Confidence 111110 00000 01356999999999999763 443 3322 555544 9999999 8999 8899
Q ss_pred CCCCceeEEEEEeec-ch-h-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhC
Q 048360 120 RSKPGLTLRLELFVN-KR-E-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTE 178 (199)
Q Consensus 120 ~~~p~~~~rFel~i~-G~-E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g 178 (199)
++||.+++|||||++ |+ | .++.|.++. .++|||+|++||+||| |||||+|||+ +++|
T Consensus 338 ~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~--~~~~yl~al~yG~PP~~G~glGiDRLvmll~g 415 (434)
T 1x54_A 338 PNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPK--DYEWYLDLRRYGSVPHSGFGLGVERLVAWVLK 415 (434)
T ss_dssp SSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGG--GGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTT
T ss_pred CCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChH--HHHHHHHHHhcCCCCceEEEEcHHHHHHHHcC
Confidence 999999999999999 99 8 234454332 2489999999999999 9999999965 9999
Q ss_pred CCcccee--eecCCCcc
Q 048360 179 TKERHLV--YARAHRGY 193 (199)
Q Consensus 179 ~~~i~~v--~~~~~~~~ 193 (199)
++||++| ||+.++.+
T Consensus 416 ~~~Irdvi~FP~~~~~~ 432 (434)
T 1x54_A 416 LDHIRWAALFPRTPARL 432 (434)
T ss_dssp CSSGGGGSSSCCBTTBC
T ss_pred CCcHHhEEEccCcCCCC
Confidence 9999966 55555443
No 14
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=1.5e-44 Score=325.62 Aligned_cols=176 Identities=16% Similarity=0.091 Sum_probs=114.5
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------H---HHHHHHHhhH--------
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------W---MVMELKGSCK-------- 57 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------~---l~~~i~~~~~-------- 57 (199)
++||+||||+|+|+++ +|++|||+||||||||+++ .||+||||| + ++++++..+.
T Consensus 172 ~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~ 250 (422)
T 1n9w_A 172 RAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAG 250 (422)
T ss_dssp -------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred cEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccch
Confidence 5799999999999976 7899999999999999986 699999999 1 2222222111
Q ss_pred --HHhcCCCCCCCCccccCC-CCceeeeHHHHHHhhc--C-----CCCCHH---HHhccc-------chhhccc---CCC
Q 048360 58 --IRYHSNGPENEPIEIDFM-PPFRKLDMIAEMERPA--N-----ICMPKI---FLLMLL-------PKLSTDH---MSP 114 (199)
Q Consensus 58 --~~~~~~~~~~~~~~~~~~-~p~~rity~ea~~~~~--G-----~~~~~~---~L~~li-------p~fv~dy---~~p 114 (199)
+.+.. ..++.. .||+|+||.||++.+. | .++..+ .|.+.+ |+||+|| ++|
T Consensus 251 ~~i~~~~-------~~~~~~~~pf~rity~eA~~~~~~~~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~p 323 (422)
T 1n9w_A 251 DEIRLLG-------ATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRP 323 (422)
T ss_dssp HHHHHTT-------CCCCCCSSSCCEEEHHHHHHHHHHTSCCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSC
T ss_pred hhhhhcC-------ccccccCCCcceeEHHHHHHHHHhcCCcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCc
Confidence 11111 122222 6999999999998763 3 234332 333322 8999999 899
Q ss_pred cccccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-H
Q 048360 115 LAKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-F 175 (199)
Q Consensus 115 lak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~ 175 (199)
|+++.++| ++++|||||++|+| .++.|.++.. ++|||+|++||+||| |||||+|||+ +
T Consensus 324 f~~~~~~d-~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~--~~~yl~a~~yG~PPhgG~glGiDRLvm~ 400 (422)
T 1n9w_A 324 FYTYPEED-GTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEA--FHGYLEVFKYGMPPHGGFAIGAERLTQK 400 (422)
T ss_dssp TTBCBCTT-SBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGG--GHHHHGGGGBCCCSEEEEEEEHHHHHHH
T ss_pred CcCCCCCC-CEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHH--HHHHHHHHhcCCCCceEEEEcHHHHHHH
Confidence 97666556 89999999999999 2344544332 489999999999999 9999999965 9
Q ss_pred HhCCCccceeeec
Q 048360 176 VTETKERHLVYAR 188 (199)
Q Consensus 176 l~g~~~i~~v~~~ 188 (199)
++|.+||++|+|.
T Consensus 401 l~g~~~Irdvi~F 413 (422)
T 1n9w_A 401 LLGLPNVRYARAF 413 (422)
T ss_dssp HTTCSSGGGGCSC
T ss_pred HhCCCcHHhEEec
Confidence 9999999966544
No 15
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=6.2e-44 Score=332.64 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=68.7
Q ss_pred chhhccc-C-------------CCcccccCC-------CC-ce-eEEEEEeecchh-----------------hhhcCCc
Q 048360 105 PKLSTDH-M-------------SPLAKGHRS-------KP-GL-TLRLELFVNKRE-----------------DQQMGDS 144 (199)
Q Consensus 105 p~fv~dy-~-------------~plak~~~~-------~p-~~-~~rFel~i~G~E-----------------~~~~g~~ 144 (199)
|+||||| + +||+|++++ || ++ ++||||+++|.| .+..|.+
T Consensus 427 p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~ 506 (585)
T 1c0a_A 427 PLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGIN 506 (585)
T ss_dssp EEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCC
T ss_pred cEEEEeCCccccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCC
Confidence 8999999 4 599988876 68 47 999999999999 1222332
Q ss_pred --cccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccceeee--cCCCc
Q 048360 145 --EAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLVYA--RAHRG 192 (199)
Q Consensus 145 --~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v~~--~~~~~ 192 (199)
+....++|||+|++||+||| |||||+|||+ +++|++|||+|+| +..++
T Consensus 507 ~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~ 560 (585)
T 1c0a_A 507 EEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 560 (585)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTS
T ss_pred hHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCc
Confidence 11223579999999999999 9999999965 9999999996654 44444
No 16
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=1.6e-39 Score=280.54 Aligned_cols=178 Identities=15% Similarity=0.049 Sum_probs=131.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCC--CC-CCCchHHHH-----------HH---HHHHHHhhHHHhcCCC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEG--MD-LTHLPELTM-----------WM---VMELKGSCKIRYHSNG 64 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~--~~-~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~ 64 (199)
++||+||||+|+|+++++|++|||+||||||||+ ++ .||+||||| ++ +++++..+........
T Consensus 69 ~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~ 148 (294)
T 1nnh_A 69 KMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT 148 (294)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4799999999999999999999999999999999 75 799999999 22 2222222210000000
Q ss_pred CCCCCcccc-CCCCceeeeHHHHHHhhcCCCCCHHHHhccc--chhhcccCCCcccccCCCCceeEEEEEeec-ch-h--
Q 048360 65 PENEPIEID-FMPPFRKLDMIAEMERPANICMPKIFLLMLL--PKLSTDHMSPLAKGHRSKPGLTLRLELFVN-KR-E-- 137 (199)
Q Consensus 65 ~~~~~~~~~-~~~p~~rity~ea~~~~~G~~~~~~~L~~li--p~fv~dy~~plak~~~~~p~~~~rFel~i~-G~-E-- 137 (199)
...++ +. +|+|+||.||++++ |. ..+. .+.+ |+||+||=+||+++. ||+++++||+|++ |+ |
T Consensus 149 ----~~~i~~~~-~~~r~~y~ea~~~~-g~--~~er-~~~~~~P~~v~~~P~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~ 217 (294)
T 1nnh_A 149 ----GREFPKTK-RFEVFEYSEVLEEF-GS--DEKA-SQEMEEPFWIINIPREFYDRE--VDGFWRNYDLILPYGYGEVA 217 (294)
T ss_dssp ----SSCCCCCS-SCEEEEHHHHHHHT-SS--HHHH-HHHCSSCEEEECCCCCTTBCE--ETTEECEEEEEETTTTEEEE
T ss_pred ----ccccccCC-CceEeEHHHHHHHh-CC--hHhh-hhhcCCCEEEEcCChHHhCCC--CCCeEEEEEEEECCCcEEEe
Confidence 01222 33 39999999999865 43 1112 2223 999999978887655 8899999999999 98 8
Q ss_pred ---------------hhhcCCccccCCcHHHHHHHhcCCC-CC-cceecHHHHH-HHhCCCccceee--ecCCCc
Q 048360 138 ---------------DQQMGDSEAMVIDGSFCTAHAKKQT-IS-YFATLIDGVS-FVTETKERHLVY--ARAHRG 192 (199)
Q Consensus 138 ---------------~~~~g~~~~~~~d~~yl~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~~v~--~~~~~~ 192 (199)
.+..|.++.. ++|||+|++||+| || |||||+|||+ +++|++||++|+ |+.++.
T Consensus 218 ~g~~r~~d~~~l~~~~~~~g~~~~~--~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~ 290 (294)
T 1nnh_A 218 SGGEREWEYEKIVAKIRKAGLNEDS--FRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290 (294)
T ss_dssp EEEEBCCCHHHHHHHHHHTTCCGGG--GHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred cCeeecCCHHHHHHHHHHcCCCccC--HHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCc
Confidence 1344544332 6899999999999 99 9999999965 999999999665 454443
No 17
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=286.44 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=64.1
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPI 70 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~ 70 (199)
..||+||||||||+|+++|++||||||||||||+++++||||||| +++..+-+.+...+.. .
T Consensus 197 ~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~-------~ 269 (617)
T 4ah6_A 197 FYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPN-------D 269 (617)
T ss_dssp EEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCS-------S
T ss_pred ccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHH-------h
Confidence 469999999999999999999999999999999999999999999 3332222222222321 1
Q ss_pred cccCCCCceeeeHHHHHHhh
Q 048360 71 EIDFMPPFRKLDMIAEMERP 90 (199)
Q Consensus 71 ~~~~~~p~~rity~ea~~~~ 90 (199)
..++..||+|+||.||++++
T Consensus 270 ~~~~~~pf~r~ty~eA~~~y 289 (617)
T 4ah6_A 270 KDPVVVPFPTMTFAEVLATY 289 (617)
T ss_dssp SCCCCSSCCEEEHHHHHHHT
T ss_pred cCccCCCceEeEHHHHHHHH
Confidence 22567799999999999876
No 18
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.92 E-value=4.1e-10 Score=96.44 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=80.0
Q ss_pred eeeec--CchHHH--HHHHhcCCC---ceEEeccccccCCCCCCCchHHHH-HHHHHHHHhhHHHhcCCCCCCCCccccC
Q 048360 3 LYMRV--SPELNL--KRSIAGGFR---RLCEIGKCYRNEGMDLTHLPELTM-WMVMELKGSCKIRYHSNGPENEPIEIDF 74 (199)
Q Consensus 3 ~yL~~--SPql~l--k~ll~~g~~---rVfeIg~~FRaE~~~~rHl~EFtm-~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 74 (199)
.+||+ +|.+.. +. ....-+ |+|+||+|||+|..+..|.+||++ +.. .+
T Consensus 125 ~~LRp~l~p~l~~~~r~-~~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~-----------------------i~ 180 (288)
T 3dsq_A 125 KCLRPMLAPNLYTLWRE-LERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLT-----------------------EL 180 (288)
T ss_dssp EEECSCSHHHHHHHHHH-HTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEE-----------------------EE
T ss_pred hhhhhcChHHHHHHHHH-HHhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEE-----------------------EE
Confidence 46774 466541 22 222234 899999999999998889999986 100 00
Q ss_pred CCCceeeeHHHHHHh------hcCCCCCHHHHhcccchhhccc-CCCcccccCCCCceeEEEEEeecchhhhhcCCcccc
Q 048360 75 MPPFRKLDMIAEMER------PANICMPKIFLLMLLPKLSTDH-MSPLAKGHRSKPGLTLRLELFVNKREDQQMGDSEAM 147 (199)
Q Consensus 75 ~~p~~rity~ea~~~------~~G~~~~~~~L~~lip~fv~dy-~~plak~~~~~p~~~~rFel~i~G~E~~~~g~~~~~ 147 (199)
..+ ..++|.++... ..|++ +| ..+ ++.+-.+.++|++++|.|+-..|. ...
T Consensus 181 g~~-~~~~f~elkg~le~ll~~LGl~---------------~~~~~~-----~s~e~~~~~~~l~~~~~eig~~Gv-~p~ 238 (288)
T 3dsq_A 181 GTP-LEERHQRLEDMARWVLEAAGIR---------------EFELVT-----ESSVVYGDTVDVMKGDLELASGAM-GPH 238 (288)
T ss_dssp TCC-GGGHHHHHHHHHHHHHHHHTCC---------------CCEEEE-----CCCCSSCCCEEEEETTEEEEEEEE-ESC
T ss_pred cCC-chhhHHHHHHHHHHHHHHcCCC---------------CcEEec-----CCcceEEEEEEEEeCCEEEEEEEe-cHH
Confidence 000 11233333221 12321 12 111 122233677899999998665553 222
Q ss_pred CCcHHHHHHHhcCC-CCC-cceecHHHHH-HHhCCCccceeee
Q 048360 148 VIDGSFCTAHAKKQ-TIS-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 148 ~~d~~yl~a~~~G~-pPh-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
-+++ +||+ ||| |||||+|||+ ++.|.+|||++.+
T Consensus 239 vl~~------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 239 FLDE------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp TTTT------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred HHHH------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCC
Confidence 2221 6894 789 9999999976 8899999998874
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=98.55 E-value=3.7e-07 Score=78.73 Aligned_cols=174 Identities=11% Similarity=-0.009 Sum_probs=117.4
Q ss_pred eeecCchHHHHHHHhc-CC---CceEEeccccccCCC--CCCCchHHHH--------------H----HHHHHHHhhH--
Q 048360 4 YMRVSPELNLKRSIAG-GF---RRLCEIGKCYRNEGM--DLTHLPELTM--------------W----MVMELKGSCK-- 57 (199)
Q Consensus 4 yL~~SPql~lk~ll~~-g~---~rVfeIg~~FRaE~~--~~rHl~EFtm--------------~----l~~~i~~~~~-- 57 (199)
-..+|==.|+++++.- || +.+|+-.++-|.++. +.+|.-+|++ + .|+.|...++
T Consensus 68 eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~t 147 (330)
T 12as_A 68 EVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKAT 147 (330)
T ss_dssp EECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888765 58 999999999998653 6999999988 3 3333333322
Q ss_pred -----HHhcCCCCCCCCccccCCCCceeeeHHHHHHhhcCCCCCH-H-HHhccc-chhhccc---C---CCcccccCCCC
Q 048360 58 -----IRYHSNGPENEPIEIDFMPPFRKLDMIAEMERPANICMPK-I-FLLMLL-PKLSTDH---M---SPLAKGHRSKP 123 (199)
Q Consensus 58 -----~~~~~~~~~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~-~-~L~~li-p~fv~dy---~---~plak~~~~~p 123 (199)
..|+ ....+..++..+|.+|+.+++-..+... + ...+-- +|||++- + .|--...||.+
T Consensus 148 E~~~~~~y~--------l~p~Lp~~i~fitsqeL~~~YP~lt~keRE~~i~ke~gaVFii~IG~~L~~g~~HD~RaPDYD 219 (330)
T 12as_A 148 EAAVSEEFG--------LAPFLPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDYD 219 (330)
T ss_dssp HHHHHHHSC--------CCCCSCSSCEEEEHHHHHHHSSSSCHHHHHHHHHHHHSEEEEECCSSCCSSSCCSSCCCTTTB
T ss_pred HHHHHHHhc--------cCcCCCCceEEEeHHHHHHHcCCCChHHHHHHHHHhhCCEEEEecCCccCCCCcCcCcCCCCC
Confidence 1221 1112567899999999999884433221 1 222222 9999997 2 23334455555
Q ss_pred cee---------EEEEEee-c-----chh----------------hhhcCCccccCCcHHHHHHHhcCC-CCC-cceecH
Q 048360 124 GLT---------LRLELFV-N-----KRE----------------DQQMGDSEAMVIDGSFCTAHAKKQ-TIS-YFATLI 170 (199)
Q Consensus 124 ~~~---------~rFel~i-~-----G~E----------------~~~~g~~~~~~~d~~yl~a~~~G~-pPh-G~giGl 170 (199)
.+. ...||++ + -.| ++..|.++... -+|..++..|- |++ |.|||.
T Consensus 220 DW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIRVd~~~L~~QL~~~g~~er~~--~~yh~~ll~g~LP~TiGGGIGQ 297 (330)
T 12as_A 220 DWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLE--LEWHQALLRGEMPQTIGGGIGQ 297 (330)
T ss_dssp CCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEBCCHHHHHHHHHHHTCTTGGG--SHHHHHHHTTCSCCEEEEEEEH
T ss_pred CccccccccccCccceEEEeccccCceeEEecceEEeCHHHHHHHHHHcCCChhhc--cHHHHHHHcCCCCccccccccH
Confidence 666 8889887 3 234 34556655444 47999999885 888 999999
Q ss_pred HHHH-HHhCCCccceeee
Q 048360 171 DGVS-FVTETKERHLVYA 187 (199)
Q Consensus 171 eRl~-~l~g~~~i~~v~~ 187 (199)
+||+ ++++...|-+|-+
T Consensus 298 SRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 298 SRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp HHHHHHHHTCSCGGGTSC
T ss_pred HHHHHHHhccchhheeec
Confidence 9987 8889999987754
No 20
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.32 E-value=4.4e-07 Score=79.64 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=30.8
Q ss_pred eecCchHHHHHHHhcCC--CceEEeccccccCCCCCCCchHHHH
Q 048360 5 MRVSPELNLKRSIAGGF--RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 5 L~~SPql~lk~ll~~g~--~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
.++||.+. ++++.+- -|+||||+|||+|+.+.+|+|||+|
T Consensus 177 t~tsp~ll--r~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~q 218 (350)
T 1b7y_A 177 THTSPMQV--RYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQ 218 (350)
T ss_dssp SSSTHHHH--HHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEE
T ss_pred ccchHHHH--HHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHE
Confidence 34566663 5556543 4799999999999888889999987
No 21
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.20 E-value=3.9e-07 Score=77.62 Aligned_cols=45 Identities=33% Similarity=0.517 Sum_probs=37.7
Q ss_pred ceeee--cCchHHHHHHH----hcCCCceEEeccccccCCCCCCCchHHHH
Q 048360 2 ELYMR--VSPELNLKRSI----AGGFRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 2 ~~yL~--~SPql~lk~ll----~~g~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
..+|| +|||++..... ..+..|+||||+|||+|..+.+|++||||
T Consensus 130 ~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~q 180 (290)
T 3qtc_A 130 NFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTM 180 (290)
T ss_dssp TEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEE
T ss_pred CeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheE
Confidence 46899 99999944432 25668999999999999888999999998
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.42 E-value=2.5e-05 Score=66.74 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=37.5
Q ss_pred eeeecCchHHHHHHHhcC----CCceEEeccccccCCCCCCCchHHHH
Q 048360 3 LYMRVSPELNLKRSIAGG----FRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g----~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
.+||+|.--.++++++.+ --|+||||+|||+++.+.+|+|||+|
T Consensus 110 ~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~ 157 (294)
T 2rhq_A 110 ILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQ 157 (294)
T ss_dssp EEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCBTTBCSEEEE
T ss_pred ceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCCCCCCChhhE
Confidence 467888777778888877 67999999999998777789999987
No 23
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.34 E-value=7e-05 Score=68.58 Aligned_cols=35 Identities=0% Similarity=-0.112 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCC---CC-cceecHHHHH-HHhCCCccceeee
Q 048360 151 GSFCTAHAKKQT---IS-YFATLIDGVS-FVTETKERHLVYA 187 (199)
Q Consensus 151 ~~yl~a~~~G~p---Ph-G~giGleRl~-~l~g~~~i~~v~~ 187 (199)
..-|+. +|+| |. .||||+|||+ ...|.++||+.+-
T Consensus 440 P~VL~~--~Gipe~~~v~AfgLgLeRLaml~~gi~diR~l~~ 479 (508)
T 3l4g_A 440 PEMLLP--MGLPENVSVIAWGLSLERPTMIKYGINNIRELVG 479 (508)
T ss_dssp HHHHGG--GTCCTTEEEEEEEEESHHHHTTTTTCSCGGGTSS
T ss_pred HHHHHH--CCCCCCceEEEEEecHHHHHHHHcCCcHHHHHhc
Confidence 444544 5887 56 8999999977 8889999998774
No 24
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=92.61 E-value=0.027 Score=48.73 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=28.4
Q ss_pred ecCchHHHHHHHhcCCC--ceEEeccccccCCCCCCCchHHHH
Q 048360 6 RVSPELNLKRSIAGGFR--RLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 6 ~~SPql~lk~ll~~g~~--rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
++||.+ ++ .+..+-. |+|++|+|||++ .+.+|+|+|.+
T Consensus 169 htsp~~-lr-~l~~~~~pirifeiGrVyR~d-~d~th~p~fhq 208 (327)
T 3pco_A 169 QTSGVQ-IR-TMKAQQPPIRIIAPGRVYRND-YDQTHTPMFHQ 208 (327)
T ss_dssp CTHHHH-HH-HHTTCCSSCCBCCEECCBCSC-CBTTBCSBCCE
T ss_pred cCCHHH-HH-HHHhCCCCeeEEeeccEEecC-CCcccCCcccE
Confidence 456666 34 4455544 899999999998 57899999865
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=87.26 E-value=0.21 Score=44.35 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=31.2
Q ss_pred cCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH
Q 048360 7 VSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 7 ~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
+||-+. +. +..+..|+|++|.|||++..+..|.|+|.+
T Consensus 120 ts~~~~-~~-l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ 157 (415)
T 3cmq_A 120 TSAHQW-DL-LHAGLDAFLVVGDVYRRDQIDSQHYPIFHQ 157 (415)
T ss_dssp GGGGHH-HH-HHTTCSEEEEEEEEECCCCCBTTBCSEEEE
T ss_pred CcHHHH-HH-HHHCCCCEEEeeeEEeccchhhhhhHHhcC
Confidence 556664 33 566778999999999999989999999987
No 26
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=85.55 E-value=0.28 Score=42.33 Aligned_cols=37 Identities=3% Similarity=0.002 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCC----C-cceecHHHHH-HHhCCCccceeeecC
Q 048360 151 GSFCTAHAKKQTI----S-YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 151 ~~yl~a~~~G~pP----h-G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
..-++ .+|++| . .||||+|||. ...|.++||+.+--+
T Consensus 277 P~Vl~--~~gid~~~~~g~AFglgleRlaml~~~i~diR~~~~~d 319 (327)
T 3pco_A 277 PNVLR--NVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFEND 319 (327)
T ss_dssp HHHHH--TTTCCTTTCEEEEEEEEHHHHHHHHHTCSCGGGGTTCC
T ss_pred HHHHH--HcCCCCccceEEEEEechHHHHHHHcCCcHHHHHHhcC
Confidence 44444 368875 5 7999999976 888999999876443
No 27
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=84.92 E-value=0.21 Score=43.11 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=16.9
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|+||+|||+|....-+.-||+|
T Consensus 118 ~rl~y~g~vfR~e~p~~gR~REF~Q 142 (344)
T 1z7m_A 118 ARYSYFGKIFRKEKRHKGRSTENYQ 142 (344)
T ss_dssp EEEEEEEECCCCCC-------CCEE
T ss_pred eEEEEECcEEccCCCCCCCcceeEE
Confidence 5999999999999776667889999
No 28
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=84.34 E-value=0.17 Score=44.16 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=16.7
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|+|+||+|||+|..+.-+.-||+|
T Consensus 102 ~r~~~~g~vfR~E~~~~gR~reF~q 126 (420)
T 1qe0_A 102 IKLYYNGPMFRYERKQKGRYRQFNQ 126 (420)
T ss_dssp EEEEEEEEEECC-------CCEEEE
T ss_pred eEEEEecCEeecCCCcCCCcccEEE
Confidence 5999999999999766556779998
No 29
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=83.18 E-value=0.42 Score=41.76 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.4
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|+||++||+|....-+.-||+|
T Consensus 102 ~rl~~~g~vfR~e~p~~gR~REf~Q 126 (421)
T 1h4v_B 102 VRLWMAGPMFRAERPQKGRYRQFHQ 126 (421)
T ss_pred eEEEEecCeecCCCCCCCCcccEEE
Confidence 5999999999999766546779999
No 30
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=83.10 E-value=0.28 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.4
Q ss_pred CceEEeccccccCCCCCCC----chHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTH----LPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rH----l~EFtm 46 (199)
-|+|+||+|||+|.++.+| .-||||
T Consensus 355 lrl~~~g~~fR~E~~~~~~GL~R~ReF~Q 383 (645)
T 1nyr_A 355 IRIAELGTMHRYEASGAVSGLQRVRGMTL 383 (645)
T ss_dssp EEEEEEEEEECCCCTTTCBTTTBCSEEEE
T ss_pred eEEEEeccEEecCCCccccCcceeeeEEE
Confidence 3899999999999987554 489999
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=80.97 E-value=0.41 Score=41.86 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|+||++||+|....-+.-||+|
T Consensus 102 ~rl~~~g~vfR~e~p~~gR~Ref~Q 126 (423)
T 1htt_A 102 QRLWYIGPMFRHERPQKGRYRQFHQ 126 (423)
T ss_dssp EEEEEEEEEECCCCCCSSCCSEEEE
T ss_pred eEEEEEcCEecCCCCCCCccceeEE
Confidence 5999999999999766556789999
No 32
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=80.54 E-value=0.18 Score=44.05 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.8
Q ss_pred CceEEeccccccCCCCCC----CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLT----HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~r----Hl~EFtm 46 (199)
-|+|+||+|||+|.++++ ..-||+|
T Consensus 112 ~r~~~~g~~fR~E~~~p~~Gl~R~reF~q 140 (401)
T 1evl_A 112 LRMAEFGSCHRNEPSGSLHGLMRVRGFTQ 140 (401)
T ss_dssp EEEEEEEEEECCCCGGGCBTTTBCSEEEE
T ss_pred hhhccccceecCCCCcccccccccCcEEe
Confidence 489999999999997443 5689999
No 33
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=78.27 E-value=0.49 Score=41.62 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.2
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|+||++||+|....-+.-||+|
T Consensus 100 ~rl~~~g~vfR~erp~~gR~REF~Q 124 (434)
T 1wu7_A 100 LRWYSFPKVWRYEEPQAGRYREHYQ 124 (434)
T ss_dssp EEEEECCEEECCCCSCSSCCSEEEE
T ss_pred eEEEEEcCeecCCCCCCCCccceEE
Confidence 4999999999999765446779999
No 34
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=78.23 E-value=0.32 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEEeccccccCCC-CCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
|+||||+|||++.. +..|.+||++
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~q 231 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFS 231 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEE
T ss_pred eEEEEeeEEecCccccccccceeeE
Confidence 79999999999876 7778888865
No 35
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=78.18 E-value=0.49 Score=42.39 Aligned_cols=25 Identities=24% Similarity=0.370 Sum_probs=19.5
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|++|+|||+|.++.-+.-||++
T Consensus 131 ~r~~~~g~vfR~E~~~~gR~ReF~Q 155 (467)
T 4e51_A 131 KRLWYIGPMFRHERPQRGRYRQFHQ 155 (467)
T ss_dssp EEEEEEEEEECCCCC---CCSEEEE
T ss_pred EEEEEEccEEccCCCCCCCcCceEE
Confidence 4899999999999876555679998
No 36
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=77.52 E-value=0.53 Score=42.17 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.4
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|+||+|||+|....-+.-||++
T Consensus 124 ~r~~y~g~vfR~e~~~~gR~ReF~Q 148 (456)
T 3lc0_A 124 AKWYSIPQCWRYEAITRGRRREHYQ 148 (456)
T ss_dssp EEEEECCEEECCCC-----CCEEEE
T ss_pred EEEEEeccEEecCCCCCCCccceEE
Confidence 5899999999999876557789998
No 37
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=77.18 E-value=0.99 Score=39.66 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=19.7
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|++|+|||+|....-+.-||++
T Consensus 104 ~r~~y~g~vfR~e~~~~gR~Ref~Q 128 (400)
T 3od1_A 104 LRLAYQSNVYRAQQNEGGKPAEFEQ 128 (400)
T ss_dssp EEEEEEEEEECCCC---CCCSEEEE
T ss_pred eEEEEEcCEEeCCCCCCCCCCccEE
Confidence 4899999999999876557779999
No 38
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=77.18 E-value=0.53 Score=41.43 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=18.6
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHhCCCc
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVTETKE 181 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~g~~~ 181 (199)
..++.+- |-.|. ||++|+|||+.++...+
T Consensus 302 ~L~~~fG-~~~pavGfaiglerL~~~l~~~~ 331 (400)
T 3od1_A 302 ELLSKFH-RPAQATGFGVRIDLLVEALNGEI 331 (400)
T ss_dssp THHHHTT-CCCCEEEEEEEHHHHHHHHCC--
T ss_pred hhhhccC-CCCCEEEEEeeHHHHHHHHHhcC
Confidence 3555552 22478 99999999986655443
No 39
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=74.45 E-value=1.1 Score=40.07 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=17.3
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|+||+|||+|....-+.-||++
T Consensus 121 ~r~~y~g~vfR~e~~~~gr~Ref~Q 145 (465)
T 3net_A 121 FARYQMDVVFRGERAKDGRFRQFRQ 145 (465)
T ss_dssp EEEEECCEEECBC------CCEEEE
T ss_pred eEEEEeccEEecCCCCCCCcceeEE
Confidence 4999999999999876556779998
No 40
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=74.23 E-value=0.59 Score=41.82 Aligned_cols=24 Identities=8% Similarity=-0.215 Sum_probs=16.9
Q ss_pred HHHHHHhcCCC---CC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQT---IS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~p---Ph-G~giGleRl~~l~ 177 (199)
..++.| |-| |. |||+|+|||+.++
T Consensus 322 ~Lv~~f--g~~~~~PavGFaig~eRl~~~l 349 (456)
T 3lc0_A 322 NLLTTY--GSPTPIPCAGFGFGDCVIVELL 349 (456)
T ss_dssp SHHHHT--TCSSCCCEEEEEEESSHHHHHH
T ss_pred HHHHHh--CCCCCCCEEEEEeEHHHHHHHH
Confidence 345544 544 88 9999999988544
No 41
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=73.94 E-value=1.5 Score=38.21 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=18.0
Q ss_pred CCceEEeccccccCCC------CCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEGM------DLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~~------~~rHl~EFtm 46 (199)
--|.|+||+|||+|.. ..-+.-||++
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q 148 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQ 148 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEE
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEE
Confidence 3799999999999987 4456779998
No 42
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=73.59 E-value=0.85 Score=42.67 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.3
Q ss_pred CceEEeccccccCCC-CCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
-|+||||+|||++.. +..|.+||.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~q 250 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHS 250 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEE
T ss_pred eEEEEEeeEEecCccccccCCCcceE
Confidence 479999999998876 7788898876
No 43
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=73.38 E-value=0.48 Score=42.25 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=19.6
Q ss_pred CceEEeccccccCCCCCC---CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLT---HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~r---Hl~EFtm 46 (199)
-|+|+||+|||+|-.... ..-||+|
T Consensus 150 ~rl~~ig~~fR~E~~p~~Gl~R~REF~q 177 (458)
T 2i4l_A 150 LNLYHIQWKFRDEQRPRFGVMRGREFLM 177 (458)
T ss_dssp EEEEEEEEEECCCSSCBTGGGBCSEEEE
T ss_pred eeeEEecCEeeCCCCCCCCcccccceEE
Confidence 599999999999943311 5689999
No 44
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=73.32 E-value=0.88 Score=42.70 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.3
Q ss_pred CceEEeccccccCCC-CCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
-|+||||+|||++.. +..|.+||.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~q 250 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHS 250 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEE
T ss_pred eEEEEEeeEEecCccccccCCCcceE
Confidence 479999999998876 7788898876
No 45
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=73.06 E-value=0.9 Score=42.75 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.5
Q ss_pred CceEEeccccccCCC-CCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
-|+||||+|||++.. +..|.+||.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~q 250 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHS 250 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEE
T ss_pred eEEEEeccEEecCccccccCCCcceE
Confidence 479999999998876 7789899877
No 46
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=72.89 E-value=0.91 Score=41.78 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=20.1
Q ss_pred ceEEeccccccCCC-CCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
|+||+|+|||++.. +..|.+||.+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~q 243 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHS 243 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEE
T ss_pred EEEEEeeEEecCCcccCcCCCcceE
Confidence 79999999998775 5668888865
No 47
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=72.55 E-value=0.94 Score=42.73 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.5
Q ss_pred CceEEeccccccCCC-CCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
-|+||||+|||++.. +..|.+||.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Efhq 250 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHS 250 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEE
T ss_pred eEEEEEeeEEccCccccccCCCcceE
Confidence 479999999998876 7789899877
No 48
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=72.07 E-value=0.56 Score=44.34 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=19.9
Q ss_pred CceEEeccccccCCCCCCCc----hHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHL----PELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl----~EFtm 46 (199)
=|+||||++||||-+ +||- =||||
T Consensus 267 ~~~aqiG~~fRnEis-Pr~GLlR~REF~q 294 (693)
T 2zt5_A 267 FAAAQIGNSFRNEIS-PRSGLIRVREFTM 294 (693)
T ss_dssp EEEEEEEEEECCCSS-CCSGGGSCSEEEE
T ss_pred EEEEeecceecCCCC-CCCCCccceeeEE
Confidence 489999999999965 5554 79998
No 49
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=69.27 E-value=0.95 Score=40.18 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=19.5
Q ss_pred CceEEeccccccCCCC---C----CCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD---L----THLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~---~----rHl~EFtm 46 (199)
-|+|++|+|||+|.++ . -..-||++
T Consensus 252 lrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q 283 (425)
T 2dq3_A 252 IYLTAYTPCYRREAGAYGKDIRGIIRQHQFDK 283 (425)
T ss_dssp EEEEEEEEEECCCCSCCSSSCSSSSSCSEEEE
T ss_pred eEEEEecCEecCCCCcccccccCcccccceEE
Confidence 5899999999999854 1 24568888
No 50
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=67.86 E-value=0.57 Score=40.81 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=14.2
Q ss_pred CCC-cceecHHHHHHHhCC
Q 048360 162 TIS-YFATLIDGVSFVTET 179 (199)
Q Consensus 162 pPh-G~giGleRl~~l~g~ 179 (199)
.|. ||++|+|||+.++..
T Consensus 347 ~pAvGFaiglerL~~~l~~ 365 (373)
T 3rac_A 347 APAVGFAFEVERVMAVLEA 365 (373)
T ss_dssp CCCEEEEEEHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHh
Confidence 478 999999998855543
No 51
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=67.43 E-value=1.3 Score=37.14 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCC----CC-cceecHHHHH-HHhCCCccceeeecC
Q 048360 151 GSFCTAHAKKQT----IS-YFATLIDGVS-FVTETKERHLVYARA 189 (199)
Q Consensus 151 ~~yl~a~~~G~p----Ph-G~giGleRl~-~l~g~~~i~~v~~~~ 189 (199)
..-+++ +|++ |. .|+||+|||. ...|.++||+.+-.+
T Consensus 237 P~Vl~~--~gl~~~~~~~~afel~le~L~m~~~~i~diR~~~~~d 279 (294)
T 2rhq_A 237 PNVLEM--AGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTND 279 (294)
T ss_dssp HHHHHT--TTCCTTTCEEEEEEECHHHHHHHHHTCCCTTHHHHCC
T ss_pred HHHHHH--cCCCCCcCeEEEEEEeHHHHHHHHcCCCHHHHHhcCC
Confidence 455554 5776 46 9999999976 889999999776543
No 52
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=66.99 E-value=1.2 Score=38.24 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHhcC-CCCC-cceecHHHHHHHhC
Q 048360 152 SFCTAHAKK-QTIS-YFATLIDGVSFVTE 178 (199)
Q Consensus 152 ~yl~a~~~G-~pPh-G~giGleRl~~l~g 178 (199)
..++.+ | -.|. ||++|+|||+.++.
T Consensus 309 ~L~~~f--g~~~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 309 QLLSNF--QEEAFAIGFCCHMDTILKALE 335 (344)
T ss_dssp HHHHTS--SSCCCCEEEEEEHHHHHHHHH
T ss_pred HHHHHh--CCCCCeEEEEEEHHHHHHHHH
Confidence 344444 5 2377 99999999885543
No 53
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=65.77 E-value=1.7 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.5
Q ss_pred CceEEeccccccCCCCCC----CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLT----HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~r----Hl~EFtm 46 (199)
=|+|+||+|||+|.++.+ ..-||||
T Consensus 353 lr~~~~g~~fR~E~~g~~~GL~R~ReF~q 381 (642)
T 1qf6_A 353 LRMAEFGSCHRNEPSGSLHGLMRVRGFTQ 381 (642)
T ss_dssp EEEEEEEEEECCCCGGGCBTTTBCSEEEE
T ss_pred eEEEEeccEEecCCCccccCCceeeeEEE
Confidence 389999999999998543 4578888
No 54
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=65.28 E-value=0.97 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.0
Q ss_pred CceEEeccccccCCCCCC---CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLT---HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~r---Hl~EFtm 46 (199)
-|+|+||+|||+|.+... ..-||+|
T Consensus 130 ~r~~~~g~~fR~E~~~~~Gl~R~ReF~q 157 (572)
T 2j3l_A 130 LNLYQIQTKYRDEKRSRSGLLRGREFIM 157 (572)
T ss_dssp EEEEEEEEEECCCSSCCTGGGSCSEEEE
T ss_pred HhhheecCeeccCcCcccCccccceeEE
Confidence 399999999999987522 4578888
No 55
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=65.28 E-value=1.3 Score=39.61 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.9
Q ss_pred CceEEeccccccCCCC-CC--CchHHH-H
Q 048360 22 RRLCEIGKCYRNEGMD-LT--HLPELT-M 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~-~r--Hl~EFt-m 46 (199)
-|+|+||+|||+|..+ +- ..-||+ |
T Consensus 126 ~rl~qig~~fR~E~~~~rGl~R~REF~qq 154 (459)
T 1nj8_A 126 IKIYQIVNTFRYETKHTRPLIRLREIMTF 154 (459)
T ss_dssp CCEEEEECCBCCCCSCCBTTTBCSBCSCE
T ss_pred eEEEEEccEecCccCCCCCceEeeeeecc
Confidence 3999999999999873 22 556899 6
No 56
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=65.02 E-value=2.6 Score=38.60 Aligned_cols=36 Identities=0% Similarity=-0.107 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCC-CC-cceecHHHHH-HHhCCCccceeeec
Q 048360 151 GSFCTAHAKKQT-IS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 151 ~~yl~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
..-|+ ++|++ |. .||||+|||. .+.|.++||+++-.
T Consensus 311 P~VL~--~~gi~~~v~afeLgLErLaMl~~gi~DIR~~~~~ 349 (534)
T 2du3_A 311 PTALA--EYDIPYPVMNLGLGVERLAMILYGYDDVRKMVYP 349 (534)
T ss_dssp HHHHH--TTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCT
T ss_pred HHHHH--HcCCCCcEEEEEecHHHHHHhhcCCchhhhhhcc
Confidence 34444 36776 66 9999999977 77899999876543
No 57
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=64.38 E-value=3 Score=36.24 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=13.0
Q ss_pred CCC-cceecHHHHHHHhC
Q 048360 162 TIS-YFATLIDGVSFVTE 178 (199)
Q Consensus 162 pPh-G~giGleRl~~l~g 178 (199)
-|. |||+|+|||+.++.
T Consensus 300 ~pa~Gf~igieRl~~~l~ 317 (421)
T 1h4v_B 300 VPGVGFAFGVERVALALE 317 (421)
T ss_pred CCeEEEeecHHHHHHHHH
Confidence 367 99999999874443
No 58
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=63.88 E-value=0.76 Score=41.06 Aligned_cols=23 Identities=0% Similarity=-0.201 Sum_probs=15.9
Q ss_pred HHHHhcCCC-CC-cceecHHHHHHHh
Q 048360 154 CTAHAKKQT-IS-YFATLIDGVSFVT 177 (199)
Q Consensus 154 l~a~~~G~p-Ph-G~giGleRl~~l~ 177 (199)
+..|. |.| |. |||||+|||+.++
T Consensus 334 ~~~f~-g~~~pavGfaiGieRli~~L 358 (465)
T 3net_A 334 VGTFI-GEKMPGVGISIGLTRLISRL 358 (465)
T ss_dssp SGGGT-CSCCCEEEEEEEHHHHHHHH
T ss_pred hhhhc-CCCCceeeeeccHHHHHHHH
Confidence 34334 654 67 9999999987443
No 59
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=63.66 E-value=2.3 Score=37.42 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=17.6
Q ss_pred CceEEeccccccCCCC--CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD--LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~--~rHl~EFtm 46 (199)
-|.|+||++||.|... .-+.-||++
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q 131 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQ 131 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEE
T ss_pred ceeEEEecceeccCCccccCccceeee
Confidence 4889999999999753 335567877
No 60
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=62.46 E-value=0.76 Score=38.17 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.1
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|++|+|||+|.+.. -|||+
T Consensus 71 ~R~~y~g~vfR~e~~~~---Ref~Q 92 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL---VAEYQ 92 (275)
T ss_dssp EEEECCEEEEEEETTEE---EEEEE
T ss_pred eEEEEeceEEecCCCCC---CeeeE
Confidence 59999999999998765 68888
No 61
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=61.64 E-value=1.6 Score=37.88 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.8
Q ss_pred CceEEeccccccCCC-CCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGM-DLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~-~~rHl~EFtm 46 (199)
-|.-++|+|||+|.+ +-.++=+|+|
T Consensus 169 lr~~~~g~CFR~EaS~GL~RvhqF~k 194 (346)
T 3mf2_A 169 LRFDVAADCFRREPSKHLDRLQSFRM 194 (346)
T ss_dssp EEEEEEEEEECCCCCSSTTSCSEEEE
T ss_pred eEEEEECCccCCcCCCCCeeeeeeEE
Confidence 466779999999997 4566667888
No 62
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=60.23 E-value=4.2 Score=33.77 Aligned_cols=28 Identities=4% Similarity=-0.282 Sum_probs=24.0
Q ss_pred cCCC-CC-cceecHHHHH-HHhCCCccceee
Q 048360 159 KKQT-IS-YFATLIDGVS-FVTETKERHLVY 186 (199)
Q Consensus 159 ~G~p-Ph-G~giGleRl~-~l~g~~~i~~v~ 186 (199)
+|++ |. .|+||+|||+ ...|.++||++.
T Consensus 247 ~~i~~~v~~~el~le~l~~~~~~~~dir~~~ 277 (290)
T 3qtc_A 247 WGIDKPWIGAGFGLERLLKVKHDFKNIKRAA 277 (290)
T ss_dssp GTCCSCEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred CCCCCceEEEEECHHHHHHHHcCCcHHHHHh
Confidence 6776 66 9999999987 779999999776
No 63
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=58.19 E-value=3.7 Score=36.27 Aligned_cols=34 Identities=6% Similarity=0.155 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCCC---cceecHHHHH-HHhCCCccceee
Q 048360 151 GSFCTAHAKKQTIS---YFATLIDGVS-FVTETKERHLVY 186 (199)
Q Consensus 151 ~~yl~a~~~G~pPh---G~giGleRl~-~l~g~~~i~~v~ 186 (199)
..-+++ +|+++. .|+||+|||. ...|.++||+.+
T Consensus 260 P~Vl~~--~gl~~~vg~afel~le~l~~~~~~i~DiR~~~ 297 (415)
T 3cmq_A 260 QQLVNS--AGAQDRIGWAFGLGLERLAMILYDIPDIRLFW 297 (415)
T ss_dssp HHHHHH--TTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGG
T ss_pred HHHHHH--cCCCCcceEEEEEcHHHHhhhhcCcchhhhhh
Confidence 456665 466643 6899999987 568888888655
No 64
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=57.64 E-value=1.2 Score=39.71 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.3
Q ss_pred CceEEeccccccCCCC--CC--CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD--LT--HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~--~r--Hl~EFtm 46 (199)
-|+|+||+|||+|... .= ..-||+|
T Consensus 134 ~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q 162 (471)
T 3a32_A 134 FKVFEFGRVHRYEPSGSIYGLLRVRGFTQ 162 (471)
T ss_dssp EEEEEEEEEECCCCGGGCBTTTBCSEEEE
T ss_pred eEEeeccceeccCCCcccccceeEEEEEE
Confidence 5999999999999865 22 5679998
No 65
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=57.37 E-value=4.2 Score=35.94 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.1
Q ss_pred CceEEeccccccCCC
Q 048360 22 RRLCEIGKCYRNEGM 36 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~ 36 (199)
-|+|++|+|||+|-+
T Consensus 246 lr~~~~g~~FR~E~g 260 (421)
T 1ses_A 246 LRYAGYAPAFRSEAG 260 (421)
T ss_dssp EEEEEEEEEECCCCS
T ss_pred EEEEecCCeecCCcc
Confidence 389999999999964
No 66
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=56.61 E-value=4.1 Score=36.81 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=19.2
Q ss_pred CceEEeccccccCCCCCC----CchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLT----HLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~r----Hl~EFtm 46 (199)
=|+|+||+|||+|-+ ++ ..=||+|
T Consensus 210 ~rl~qig~~FR~E~~-pr~GL~R~REF~q 237 (505)
T 1ati_A 210 FGIAQIGKAFRNEIT-PRNFIFRVREFEQ 237 (505)
T ss_dssp EEEEEEEEEEBCCSS-CCTGGGSCSEEEE
T ss_pred EEEEEeeceeeCCCC-CCCCCCcccceEE
Confidence 499999999999954 33 4568888
No 67
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=56.59 E-value=1.6 Score=39.21 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=19.4
Q ss_pred CceEEeccccccCCCC--CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD--LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~--~rHl~EFtm 46 (199)
-|+|+||+|||+|... --..-||+|
T Consensus 132 ~rl~qig~vfR~E~~~rGl~R~REF~q 158 (477)
T 1hc7_A 132 QLLNQWGNVVRWEMRTRPFLRTSEFLW 158 (477)
T ss_dssp EEEEEEEEEECCCSSCBTTTBCSEEEE
T ss_pred eeeEeecCEEeCCCCCCCcceeEEEEE
Confidence 4999999999999653 225668888
No 68
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=56.07 E-value=4.1 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.7
Q ss_pred ceEEeccccccCCCCC----CCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
|+|++|+|||+|.++. ...-||+|
T Consensus 151 rl~~~g~~fR~E~~~~~~GL~R~ReF~q 178 (460)
T 3uh0_A 151 RFSDFSPLHRNEASGALSGLTRLRKFHQ 178 (460)
T ss_dssp EEEECCEEECCCCTTTCBTTTBCSEEEE
T ss_pred EEEEecCeeeCCCCCCCCCceeeeeEEE
Confidence 7999999999998752 25678988
No 69
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=52.92 E-value=4.4 Score=35.42 Aligned_cols=15 Identities=13% Similarity=-0.026 Sum_probs=12.1
Q ss_pred CCC-cceecHHHHHHH
Q 048360 162 TIS-YFATLIDGVSFV 176 (199)
Q Consensus 162 pPh-G~giGleRl~~l 176 (199)
.|. |||||+|||+.+
T Consensus 305 ~pa~Gf~igveRl~~~ 320 (434)
T 1wu7_A 305 VPAVGFGMGDAVISLL 320 (434)
T ss_dssp CCEEEEEEEHHHHHHH
T ss_pred CCeEEEEEcHHHHHHH
Confidence 367 999999998733
No 70
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=52.25 E-value=4.6 Score=35.04 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=11.6
Q ss_pred CC-cceecHHHHHHH
Q 048360 163 IS-YFATLIDGVSFV 176 (199)
Q Consensus 163 Ph-G~giGleRl~~l 176 (199)
|. |||+|+|||+.+
T Consensus 300 pavGf~igveRl~~~ 314 (423)
T 1htt_A 300 PAVGFAMGLERLVLL 314 (423)
T ss_dssp CEEEEEEEHHHHHHH
T ss_pred CeEEEEecHHHHHHH
Confidence 67 999999998733
No 71
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=51.15 E-value=4.9 Score=36.10 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=16.7
Q ss_pred CceEEeccccccCCCC--CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD--LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~--~rHl~EFtm 46 (199)
-|.|+||+|||.|... .=+.-||++
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q 184 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQ 184 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEE
T ss_pred ceeEEEeceEeccCcccccCccceeee
Confidence 4889999999999753 234567776
No 72
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=49.63 E-value=5 Score=36.05 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=14.3
Q ss_pred ceEEeccccccCC--CCCCC----chHHHH
Q 048360 23 RLCEIGKCYRNEG--MDLTH----LPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~--~~~rH----l~EFtm 46 (199)
|+.|||+|||||. ++++| .-|||+
T Consensus 175 ~iaqig~~FR~E~g~~~~~~GL~RvrEFtq 204 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTKQIRNGVKSIGEKTE 204 (459)
T ss_dssp EEEEEEEEECCC----------CCCCEEEE
T ss_pred EEEEEeeeeecccccccCCCCcccccceee
Confidence 5899999999995 45444 245555
No 73
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=49.35 E-value=5.7 Score=36.25 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.3
Q ss_pred ceEE-eccccccCCCC----CCCchHHHH
Q 048360 23 RLCE-IGKCYRNEGMD----LTHLPELTM 46 (199)
Q Consensus 23 rVfe-Ig~~FRaE~~~----~rHl~EFtm 46 (199)
|+|+ +|+|||+| .+ --..-||+|
T Consensus 346 rl~q~ig~~FR~E-pgs~~GL~R~REF~q 373 (522)
T 2cja_A 346 KVFDRSGTSHRYE-SGGIHGIERVDEFHR 373 (522)
T ss_dssp EEEECSSEEECCC-SSSCCCTTSCSEEEE
T ss_pred eEEEEcCceEeCC-CCCCCCCeEeEEEEE
Confidence 7999 99999999 44 245678888
No 74
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=47.63 E-value=6.4 Score=35.46 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.4
Q ss_pred CceEEeccccccCCCC-C--CCchHHH-H
Q 048360 22 RRLCEIGKCYRNEGMD-L--THLPELT-M 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~-~--rHl~EFt-m 46 (199)
-|+|++|+|||+|..+ + ...-||+ |
T Consensus 158 lr~~q~g~~fR~E~~~~rGl~R~REF~~q 186 (501)
T 1nj1_A 158 MRFYQVVNTFRYETKHTRPLIRVREITTF 186 (501)
T ss_dssp EEEEEEEEEECCCCSCCBTTTBCSEEEEE
T ss_pred EEEEeecCEeeCCCCCCCCCceeEEEeee
Confidence 4899999999999873 2 2455888 6
No 75
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=45.07 E-value=6.1 Score=35.00 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=11.6
Q ss_pred CCCC--cceecHHHHH
Q 048360 161 QTIS--YFATLIDGVS 174 (199)
Q Consensus 161 ~pPh--G~giGleRl~ 174 (199)
.||+ |||||+|||+
T Consensus 329 ~p~~~~gfgiGveRli 344 (458)
T 2i4l_A 329 APIHGGSYGVGVSRLL 344 (458)
T ss_dssp EECEEEEEEEEHHHHH
T ss_pred eceEEeeecccHHHHH
Confidence 3664 9999999977
No 76
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.75 E-value=8 Score=34.54 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=13.5
Q ss_pred CceEEeccccccCCC
Q 048360 22 RRLCEIGKCYRNEGM 36 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~ 36 (199)
=|+|++|+|||+|.+
T Consensus 273 lr~~~~g~~FR~E~~ 287 (455)
T 2dq0_A 273 LLYVGVSPCFRKEAG 287 (455)
T ss_dssp EEEEEEEEEECCCTT
T ss_pred EEEEEecCcccCCCC
Confidence 489999999999985
No 77
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=43.61 E-value=12 Score=33.30 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~ 177 (199)
.|++.+----.|. ||++|+|||+.++
T Consensus 317 ~Lv~~~g~~~~PavGfa~gleRl~~~l 343 (467)
T 4e51_A 317 PLIEQLGGKPTAACGWAMGIERILELL 343 (467)
T ss_dssp HHHHHTTSSCCCEEEEEEEHHHHHHHH
T ss_pred HHHHHhCCCCCCceeehHHHHHHHHHH
Confidence 3666552113477 9999999987443
No 78
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=43.57 E-value=5.1 Score=36.00 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=17.5
Q ss_pred HHHHHHhcC-C-CCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKK-Q-TIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G-~-pPh-G~giGleRl~~l~ 177 (199)
..+..+.-| - -|. ||++|+|||+.++
T Consensus 376 ~Lv~~f~~~G~~~pavGfa~gierl~~~l 404 (517)
T 4g85_A 376 GLVGMFDPKGRKVPCVGLSIGVERIFSIV 404 (517)
T ss_dssp HHHHTTSSSCCCCCEEEEEECHHHHHHHH
T ss_pred HHHHHhccCCCCCCcccccchHHHHHHHH
Confidence 456655433 2 367 9999999987444
No 79
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=42.51 E-value=3.3 Score=36.37 Aligned_cols=15 Identities=0% Similarity=-0.064 Sum_probs=12.3
Q ss_pred CC-cceecHHHHHHHh
Q 048360 163 IS-YFATLIDGVSFVT 177 (199)
Q Consensus 163 Ph-G~giGleRl~~l~ 177 (199)
|. |||+|+|||+.++
T Consensus 336 pavGfaigieRl~~~l 351 (464)
T 4g84_A 336 PCVGLSIGVERIFSIV 351 (464)
T ss_dssp CEEEEEECHHHHHHHH
T ss_pred CCccccccHHHHHHHH
Confidence 67 9999999987443
No 80
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=41.86 E-value=7.3 Score=33.65 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=16.6
Q ss_pred HHHHHhcC--CCCC-cceecHHHHHHHh
Q 048360 153 FCTAHAKK--QTIS-YFATLIDGVSFVT 177 (199)
Q Consensus 153 yl~a~~~G--~pPh-G~giGleRl~~l~ 177 (199)
+++.+ | -.|+ |||+|+|||+.++
T Consensus 292 l~~~~--g~~~~P~vg~~igveRl~~~l 317 (420)
T 1qe0_A 292 LLELL--DGPSETGIGFALSIERLLLAL 317 (420)
T ss_dssp HHHHT--TCCCCEEEEEEEEHHHHHHHH
T ss_pred HHHHh--CCCCCCEEEEEecHHHHHHHH
Confidence 66654 4 3478 9999999987444
No 81
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=41.44 E-value=7.5 Score=35.28 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=17.4
Q ss_pred HHHHHHHh------cC--CCCC--cceecHHHHH
Q 048360 151 GSFCTAHA------KK--QTIS--YFATLIDGVS 174 (199)
Q Consensus 151 ~~yl~a~~------~G--~pPh--G~giGleRl~ 174 (199)
..|-+.+. .| -+|+ |||||+|||+
T Consensus 416 ~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli 449 (572)
T 2j3l_A 416 TRYSDAMGATVLDENGREKSVIMGCYGIGVSRLL 449 (572)
T ss_dssp THHHHHHTCEEECTTSCEEECEEEEEEEEHHHHH
T ss_pred cccccccCCEEECCCCcEEeeeeeccccCHHHHH
Confidence 45667773 35 2687 6999999977
No 82
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=38.60 E-value=11 Score=34.36 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.0
Q ss_pred CceEEeccccccCCC
Q 048360 22 RRLCEIGKCYRNEGM 36 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~ 36 (199)
=|+|++|+|||+|.+
T Consensus 355 lr~~~~~~~fR~E~g 369 (536)
T 3err_A 355 LRYAGYAPAFRSEAG 369 (536)
T ss_dssp EEEEEEEEEECCCTT
T ss_pred eeEEEecccccCCcc
Confidence 369999999999973
No 83
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=37.29 E-value=7.3 Score=35.86 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=16.7
Q ss_pred ceEEeccccccCCCCCCCchHH
Q 048360 23 RLCEIGKCYRNEGMDLTHLPEL 44 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~rHl~EF 44 (199)
|+||+|+|||.++.+..|.+|+
T Consensus 473 rlFEiG~Vf~~d~~~~~~~~e~ 494 (589)
T 3l4g_B 473 KLFEISDIVIKDSNTDVGAKNY 494 (589)
T ss_dssp EEEEEEEEEEECTTSTTSEEEE
T ss_pred EEEEeeeEEecCCccccCCccc
Confidence 7999999999876555555554
No 84
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=36.55 E-value=12 Score=33.60 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.9
Q ss_pred CCceEEeccccccC---------CCCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNE---------GMDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE---------~~~~rHl~EFtm 46 (199)
..|+-..-+|-|+. +.+.||.+=|-|
T Consensus 59 ~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEM 93 (465)
T 1yfs_A 59 YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEM 93 (465)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEE
T ss_pred CCceeccccccccCCCcccHhhcCCCCCccchhee
Confidence 47888888999953 336899999999
No 85
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=36.41 E-value=13 Score=33.59 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=21.3
Q ss_pred eeeecCchHHHHHHHhcCC--------CceEEeccccccCCC
Q 048360 3 LYMRVSPELNLKRSIAGGF--------RRLCEIGKCYRNEGM 36 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~--------~rVfeIg~~FRaE~~ 36 (199)
.||.-..|..+=. +..+- =|+|++++|||+|-.
T Consensus 264 ~~L~PTaE~~l~~-l~~~~i~sy~dLPlr~~~~s~cFR~Eag 304 (484)
T 3lss_A 264 KYLIATSEMPIAA-YHRGRWFTELKEPLKYAGMSTCFRKEAG 304 (484)
T ss_dssp EEECSSTHHHHHH-HTTTCEESCCSSCEEEEEEEEEECCCTT
T ss_pred eEEeccCcHHHHH-HHhccccchhhCCeeEEeecCccCCCCC
Confidence 5666655655432 33221 368999999999973
No 86
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=35.67 E-value=13 Score=33.90 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=12.7
Q ss_pred ceEEeccccccCCC
Q 048360 23 RLCEIGKCYRNEGM 36 (199)
Q Consensus 23 rVfeIg~~FRaE~~ 36 (199)
|+|++++|||+|.+
T Consensus 293 r~~~~s~cFR~Eag 306 (522)
T 3vbb_A 293 KYAGLSTCFRQEVG 306 (522)
T ss_dssp EEEEEEEEECSCCC
T ss_pred eEEEecccccCCCC
Confidence 68999999999975
No 87
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=35.28 E-value=13 Score=33.16 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCceEEecccccc-------CC--CCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRN-------EG--MDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRa-------E~--~~~rHl~EFtm 46 (199)
..|+-..-+|-|+ |+ .+.||.+=|-|
T Consensus 58 ~~r~~~sQkCiR~gGKHnDlenVG~t~rHhTfFEM 92 (441)
T 3hy0_A 58 YSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEM 92 (441)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEE
T ss_pred CCCccccccceecCCCCCCHHhhCCCCccccceee
Confidence 4688899999996 23 35899999999
No 88
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=34.60 E-value=12 Score=29.64 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=11.8
Q ss_pred ceEEeccccccCC
Q 048360 23 RLCEIGKCYRNEG 35 (199)
Q Consensus 23 rVfeIg~~FRaE~ 35 (199)
|+||||+||+.++
T Consensus 85 ~lFEiG~Vf~~~~ 97 (213)
T 3ig2_A 85 KFFEFGNCYHFDA 97 (213)
T ss_dssp EEEEEEEEEEECC
T ss_pred eEEEeeeEEecCc
Confidence 7999999999865
No 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.05 E-value=12 Score=33.83 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.2
Q ss_pred CceEEeccccccCCC
Q 048360 22 RRLCEIGKCYRNEGM 36 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~ 36 (199)
=|+|++++|||+|-.
T Consensus 303 lrl~~~s~~FR~Ea~ 317 (501)
T 1wle_A 303 IRMVCSSTCYRAETD 317 (501)
T ss_dssp EEEEEEEEEECCCCS
T ss_pred eeEEeccCcccCCCC
Confidence 378999999999965
No 90
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=33.93 E-value=14 Score=33.55 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=19.2
Q ss_pred CceEEeccccccCCCC---CCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMD---LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~---~rHl~EFtm 46 (199)
=|+|++|+|||+|-+. -...-||+|
T Consensus 143 lrl~q~~~~fR~E~~~~~GL~R~REF~q 170 (518)
T 3ial_A 143 LKIHQTCTIFRHETKNTKPLIRVREIHW 170 (518)
T ss_dssp EEEEEEEEEECTTCCSCBTTTBCSEEEE
T ss_pred eEEEEEeceecCCCCCCCCCceeeEEEE
Confidence 3899999999999543 235678888
No 91
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=33.85 E-value=23 Score=32.48 Aligned_cols=33 Identities=0% Similarity=-0.081 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCC-CC-cceecHHHHH-HHhCCCcccee
Q 048360 151 GSFCTAHAKKQT-IS-YFATLIDGVS-FVTETKERHLV 185 (199)
Q Consensus 151 ~~yl~a~~~G~p-Ph-G~giGleRl~-~l~g~~~i~~v 185 (199)
..-+++ +|++ |. .||||+|||. ...+.++||++
T Consensus 315 P~VLk~--~gId~~v~aFELgLErL~m~~~~i~dIR~~ 350 (549)
T 2du7_A 315 PIALAK--YNIDVPVMNLGLGVERLAMIIYGYEDVRAM 350 (549)
T ss_dssp HHHHHH--TTCCSCEEEEEEBHHHHHHHHTTCSCSHHH
T ss_pred HHHHHH--cCCCCCeEEEEEeHHHHHHHhcCCCccccc
Confidence 455664 5665 45 9999999988 44566777644
No 92
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=33.57 E-value=14 Score=33.46 Aligned_cols=25 Identities=16% Similarity=-0.041 Sum_probs=18.4
Q ss_pred CceEEeccccccCCCCC---CCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
=|+|++|+|||+|-++. ...-||++
T Consensus 149 lrl~q~g~~fR~E~~~~~Gl~R~ReF~q 176 (519)
T 4hvc_A 149 IKLNQWCNVVRWEFKHPQPFLRTREFLW 176 (519)
T ss_dssp EEEEEEEEEECCCCSCCBTTTBCSEEEE
T ss_pred eEEEEEcCeeeCCCCCCCCCcceeEEEE
Confidence 48999999999995432 24457776
No 93
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.81 E-value=15 Score=33.23 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=12.6
Q ss_pred ceEEeccccccCCC
Q 048360 23 RLCEIGKCYRNEGM 36 (199)
Q Consensus 23 rVfeIg~~FRaE~~ 36 (199)
|+|++++|||+|..
T Consensus 270 r~~~~s~cfR~Eag 283 (485)
T 3qne_A 270 RYAGYSSCFRREAG 283 (485)
T ss_dssp EEEEEEEEECSCCC
T ss_pred eEEEecccccCCCC
Confidence 59999999999974
No 94
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=31.38 E-value=19 Score=34.37 Aligned_cols=21 Identities=5% Similarity=-0.138 Sum_probs=17.7
Q ss_pred CC-cceecHHHHH-HHhCCCccc
Q 048360 163 IS-YFATLIDGVS-FVTETKERH 183 (199)
Q Consensus 163 Ph-G~giGleRl~-~l~g~~~i~ 183 (199)
|| --|||||||+ .+.|.+|.-
T Consensus 245 ~~IDTGmGlERl~~vlQg~~sny 267 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAY 267 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHH
T ss_pred cccccccCHHHHHHHHcCCCchH
Confidence 67 9999999987 888887654
No 95
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=31.03 E-value=12 Score=29.45 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=13.1
Q ss_pred CCC--ceEEeccccccCC
Q 048360 20 GFR--RLCEIGKCYRNEG 35 (199)
Q Consensus 20 g~~--rVfeIg~~FRaE~ 35 (199)
+.. |+||||+||+.++
T Consensus 80 ~~~~~~lFEiG~Vf~~~~ 97 (213)
T 3ica_A 80 KHLSLYLFEWGKCYRFHA 97 (213)
T ss_dssp TCSEEEEEEEEEEEEEEC
T ss_pred CCCCeeEEEeeeEEecCC
Confidence 454 8999999999765
No 96
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=27.05 E-value=17 Score=32.29 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=15.1
Q ss_pred CceEEeccccc---cCCCC---CCCchHHHH
Q 048360 22 RRLCEIGKCYR---NEGMD---LTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FR---aE~~~---~rHl~EFtm 46 (199)
=+++|||+||| ||-+. -...-||||
T Consensus 164 ~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q 194 (454)
T 1g5h_A 164 FGLAQIGVCFHPVSNSNQTPSSVTRVGEKTE 194 (454)
T ss_dssp EEEEEEEEEEEEEC---------CEEEEEEE
T ss_pred EEEEEeeeeccCCcccccCCCCccccCceeh
Confidence 47999999999 68653 123468887
No 97
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=25.89 E-value=22 Score=33.88 Aligned_cols=54 Identities=15% Similarity=-0.079 Sum_probs=32.5
Q ss_pred eeEEEEEeecchh------hhhcCCcc-ccCC-cHHHHHHHhc-CCC-CC-cceecHHHHH-HHhCCCccce
Q 048360 125 LTLRLELFVNKRE------DQQMGDSE-AMVI-DGSFCTAHAK-KQT-IS-YFATLIDGVS-FVTETKERHL 184 (199)
Q Consensus 125 ~~~rFel~i~G~E------~~~~g~~~-~~~~-d~~yl~a~~~-G~p-Ph-G~giGleRl~-~l~g~~~i~~ 184 (199)
.--+.|++++|+| ++-..+.. ...+ +. +| =+| +| --|||||||+ .+.|.+|+-+
T Consensus 197 ~Gpc~Ei~~dg~EiwnlVfmq~~r~~~g~~~~~~~------~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd 262 (739)
T 2ztg_A 197 AGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGA------RYRKMDNYIVDTGYGLERFVWASKGTPTVYD 262 (739)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEECTTCCEEETTE------EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHH
T ss_pred CCCeeEEEECCEEeeeeeeEEeeecCCCceeecCc------cccCCCCCeEecCcCHHHHHHHHcCCCchHH
Confidence 4568999999999 22111100 0100 00 11 134 67 9999999987 8888887653
No 98
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=24.26 E-value=36 Score=31.87 Aligned_cols=34 Identities=0% Similarity=-0.135 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCC-CC-cceecHHHHHH-HhCCCccceee
Q 048360 151 GSFCTAHAKKQT-IS-YFATLIDGVSF-VTETKERHLVY 186 (199)
Q Consensus 151 ~~yl~a~~~G~p-Ph-G~giGleRl~~-l~g~~~i~~v~ 186 (199)
..-+++ +|++ |. .||||+|||.| ..+.++||++.
T Consensus 322 P~VLk~--~GId~~V~AFELgLErLaml~~gi~DIR~~~ 358 (648)
T 2odr_B 322 PVALSK--YGIDVPVMNLGLGVERLAMISGNFADVREMV 358 (648)
T ss_dssp HHHHHH--TTCCSCEEEEEEEHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHH--cCCCCCEEEEEEeHHHHHHHhcCCCcccccc
Confidence 455554 5665 45 99999999884 45566766443
No 99
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=24.03 E-value=19 Score=34.39 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=26.7
Q ss_pred eEEEEEeecchhhhhcCCccccCCcHHHHHHHhcCCCC-CcceecHHHHHH
Q 048360 126 TLRLELFVNKREDQQMGDSEAMVIDGSFCTAHAKKQTI-SYFATLIDGVSF 175 (199)
Q Consensus 126 ~~rFel~i~G~E~~~~g~~~~~~~d~~yl~a~~~G~pP-hG~giGleRl~~ 175 (199)
..+-+++++|.++-..|. +...-++++ |++. ..|+|++|||.+
T Consensus 649 Gr~a~I~~~g~~IG~~G~-----lHP~Vl~~~--~l~~~~afEL~le~L~~ 692 (795)
T 2rhq_B 649 GRTAIVSLEGQDIGFIGE-----LHPQVAADN--DLKRTYVFELNYDAMMQ 692 (795)
T ss_dssp EEEEEEEETTEEEEEEEE-----ECHHHHHHT--TCCSEEEEEEEHHHHTT
T ss_pred CcEEEEEECCEEEEEEEE-----ECHHHHHHc--CCCCcEEEEEEHHHHhh
Confidence 456678888754333332 234566655 4443 489999999874
No 100
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=23.73 E-value=37 Score=31.85 Aligned_cols=34 Identities=0% Similarity=-0.135 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCC-CC-cceecHHHHHH-HhCCCccceee
Q 048360 151 GSFCTAHAKKQT-IS-YFATLIDGVSF-VTETKERHLVY 186 (199)
Q Consensus 151 ~~yl~a~~~G~p-Ph-G~giGleRl~~-l~g~~~i~~v~ 186 (199)
..-+++ +|++ |. .||||+|||.| ..+.++||++.
T Consensus 322 PeVLk~--~GId~~V~AFELgLErLaml~~gi~DIR~~~ 358 (665)
T 2odr_A 322 PVALSK--YGIDVPVMNLGLGVERLAMISGNFADVREMV 358 (665)
T ss_dssp HHHHHH--TTCCSCEEEEEEEHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHH--cCCCCCEEEEEEeHHHHHHHhcCCCcccccc
Confidence 455555 4665 45 99999999884 45566766433
No 101
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=23.54 E-value=37 Score=31.92 Aligned_cols=34 Identities=0% Similarity=-0.135 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCC-CC-cceecHHHHHH-HhCCCccceee
Q 048360 151 GSFCTAHAKKQT-IS-YFATLIDGVSF-VTETKERHLVY 186 (199)
Q Consensus 151 ~~yl~a~~~G~p-Ph-G~giGleRl~~-l~g~~~i~~v~ 186 (199)
..-+++ +|++ |. .|+||+|||.| ..+.++||++.
T Consensus 322 PeVLk~--~GId~~V~AFELgLErLamlk~gi~DIR~~~ 358 (685)
T 2odr_D 322 PVALSK--YGIDVPVMNLGLGVERLAMISGNFADVREMV 358 (685)
T ss_dssp HHHHHH--TTCCSCEEEEEEEHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHH--cCCCCCEEEEEEeHHHHHHHhcCCCcccccc
Confidence 455555 4665 45 99999999884 45566766433
No 102
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=22.90 E-value=39 Score=31.87 Aligned_cols=33 Identities=0% Similarity=-0.128 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCC-CC-cceecHHHHHH-HhCCCcccee
Q 048360 151 GSFCTAHAKKQT-IS-YFATLIDGVSF-VTETKERHLV 185 (199)
Q Consensus 151 ~~yl~a~~~G~p-Ph-G~giGleRl~~-l~g~~~i~~v 185 (199)
..-+++ +|++ |. .|+||+|||.| ..+.++||++
T Consensus 322 PeVLk~--~GId~~V~AFELgLErLamlk~gi~DIR~~ 357 (701)
T 2odr_C 322 PVALSK--YGIDVPVMNLGLGVERLAMISGNFADVREM 357 (701)
T ss_dssp HHHHHH--TTCCSCEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred HHHHHH--cCCCCCEEEEEEeHHHHHHHhcCCCccccc
Confidence 455555 4665 45 99999999884 4556676643
No 103
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.66 E-value=17 Score=19.19 Aligned_cols=8 Identities=50% Similarity=1.037 Sum_probs=5.8
Q ss_pred ccccccCC
Q 048360 28 GKCYRNEG 35 (199)
Q Consensus 28 g~~FRaE~ 35 (199)
|+.||||.
T Consensus 9 grtfrnek 16 (28)
T 1fme_A 9 GRTFRNEK 16 (28)
T ss_dssp SCEECCHH
T ss_pred ccccccHH
Confidence 67788874
Done!