Query 048360
Match_columns 199
No_of_seqs 174 out of 1239
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 15:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048360.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048360hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e1oa2 d.104.1.1 (A:161-502) 100.0 5E-49 3.6E-53 343.2 10.1 187 2-188 72-337 (342)
2 d1eova2 d.104.1.1 (A:205-557) 100.0 1.2E-47 8.7E-52 335.8 12.1 192 2-193 91-351 (353)
3 d1nnha_ d.104.1.1 (A:) Hypothe 100.0 1.2E-44 8.7E-49 310.5 10.2 184 2-194 68-291 (293)
4 d1b8aa2 d.104.1.1 (A:104-438) 100.0 1.6E-44 1.1E-48 313.5 8.1 189 2-192 81-332 (335)
5 d1l0wa3 d.104.1.1 (A:105-294,A 100.0 1.1E-43 8.3E-48 311.4 8.9 184 2-192 89-330 (356)
6 d1c0aa3 d.104.1.1 (A:107-287,A 100.0 1.4E-43 9.8E-48 309.8 7.6 180 2-191 81-320 (346)
7 d1n9wa2 d.104.1.1 (A:111-414) 100.0 3.9E-43 2.8E-47 301.2 6.6 183 2-188 62-303 (304)
8 d1jjca_ d.104.1.1 (A:) Phenyl- 92.3 0.018 1.3E-06 46.5 1.1 30 17-46 103-134 (266)
9 d1jjca_ d.104.1.1 (A:) Phenyl- 91.5 0.021 1.6E-06 46.0 0.7 32 157-188 215-254 (266)
10 d12asa_ d.104.1.1 (A:) Asparag 80.2 0.88 6.4E-05 36.9 4.5 63 124-188 239-313 (327)
11 d1z7ma1 d.104.1.1 (A:6-323) AT 75.1 0.33 2.4E-05 38.6 0.4 26 21-46 96-121 (318)
12 d1qf6a4 d.104.1.1 (A:242-532) 74.3 0.28 2.1E-05 39.3 -0.2 44 3-46 86-140 (291)
13 d1nj8a3 d.104.1.1 (A:0-267) Pr 73.7 0.68 5E-05 36.3 2.1 43 3-45 97-149 (268)
14 d1nj1a3 d.104.1.1 (A:19-283) P 70.7 0.74 5.4E-05 35.7 1.6 24 22-45 120-146 (265)
15 d1nyra4 d.104.1.1 (A:242-532) 70.4 0.79 5.8E-05 36.5 1.7 44 3-46 88-142 (291)
16 d1wu7a2 d.104.1.1 (A:3-329) Hi 66.8 0.71 5.2E-05 36.8 0.7 25 22-46 98-122 (327)
17 d1b76a2 d.104.1.1 (A:1-394) Gl 66.2 1.1 8.1E-05 36.2 1.8 25 22-46 147-174 (331)
18 d1kmma2 d.104.1.1 (A:4-325) Hi 63.4 0.71 5.2E-05 36.6 0.0 25 22-46 100-124 (322)
19 d1qe0a2 d.104.1.1 (A:1-325) Hi 63.2 1.2 8.7E-05 35.2 1.4 24 23-46 103-126 (325)
20 d1atia2 d.104.1.1 (A:1-394) Gl 62.8 1.3 9.7E-05 37.0 1.7 23 24-46 212-237 (394)
21 d1hc7a2 d.104.1.1 (A:5-276) Pr 61.7 1.3 9.7E-05 33.8 1.4 35 3-37 102-143 (272)
22 d1qe0a2 d.104.1.1 (A:1-325) Hi 60.8 0.82 6E-05 36.3 -0.0 32 152-183 291-323 (325)
23 d1h4vb2 d.104.1.1 (B:2-325) Hi 58.1 1.3 9.3E-05 35.2 0.7 24 23-46 102-125 (324)
24 d1riqa2 d.104.1.1 (A:1-236) Al 57.5 1.8 0.00013 33.7 1.4 26 21-46 58-92 (236)
25 d1z7ma1 d.104.1.1 (A:6-323) AT 50.5 1.9 0.00014 33.9 0.5 25 152-177 288-313 (318)
26 d1wu7a2 d.104.1.1 (A:3-329) Hi 41.8 3.2 0.00024 32.6 0.6 32 152-183 293-325 (327)
27 d1g5ha2 d.104.1.1 (A:41-330) T 40.6 3.3 0.00024 32.7 0.5 25 22-46 140-170 (290)
28 d1kmma2 d.104.1.1 (A:4-325) Hi 31.7 5.7 0.00042 30.9 0.6 27 152-179 287-315 (322)
29 d1h4vb2 d.104.1.1 (B:2-325) Hi 29.7 6 0.00044 30.9 0.4 30 152-181 289-319 (324)
30 d2nrha1 c.55.1.13 (A:1-82) Typ 25.5 9.7 0.0007 24.5 0.7 10 165-174 68-77 (82)
31 d1seta2 d.104.1.1 (A:111-421) 24.8 14 0.001 29.1 1.9 15 23-37 137-151 (311)
32 d1jjcb5 d.104.1.1 (B:475-681) 22.6 11 0.00081 27.6 0.7 13 23-35 95-107 (207)
33 d1wj9a2 d.58.53.1 (A:88-211) H 21.4 16 0.0012 24.9 1.3 20 151-170 99-119 (124)
No 1
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=100.00 E-value=5e-49 Score=343.24 Aligned_cols=187 Identities=30% Similarity=0.425 Sum_probs=141.7
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHH---HHHHhhHHHhcCCCC-C
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVM---ELKGSCKIRYHSNGP-E 66 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~---~i~~~~~~~~~~~~~-~ 66 (199)
++||+||||+|||+++++|++||||||||||||++++||+||||| +++. +++..+......... .
T Consensus 72 ~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~ 151 (342)
T d1e1oa2 72 DMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT 151 (342)
T ss_dssp EEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred ccccchhhHHHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhh
Confidence 589999999999999999999999999999999999999999999 2322 222222111111100 0
Q ss_pred CCCccccCCCCceeeeHHHHHHhhcCCCCCH-----H-----------------HHh----c----cc------chhhcc
Q 048360 67 NEPIEIDFMPPFRKLDMIAEMERPANICMPK-----I-----------------FLL----M----LL------PKLSTD 110 (199)
Q Consensus 67 ~~~~~~~~~~p~~rity~ea~~~~~G~~~~~-----~-----------------~L~----~----li------p~fv~d 110 (199)
......++..||+++++.++++++.+..... + .++ + ++ |+||||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fi~~ 231 (342)
T d1e1oa2 152 YGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE 231 (342)
T ss_dssp ETTEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEEC
T ss_pred ccchhcccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcccccchhHHHHHHHHHhhHhhccCCCcCCC
Confidence 0112345678999999999998775432110 0 011 1 11 999999
Q ss_pred c---CCCcccccCCCCceeEEEEEeecchh-----------------------hhhcCCccccCCcHHHHHHHhcCCCCC
Q 048360 111 H---MSPLAKGHRSKPGLTLRLELFVNKRE-----------------------DQQMGDSEAMVIDGSFCTAHAKKQTIS 164 (199)
Q Consensus 111 y---~~plak~~~~~p~~~~rFel~i~G~E-----------------------~~~~g~~~~~~~d~~yl~a~~~G~pPh 164 (199)
| ++|||+.+++|+.+++||||+++|.| .+..+.++..++|+|||+|++||+|||
T Consensus 232 ~P~~~~~f~~~~~~~~~~~~~fdl~~~g~El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh 311 (342)
T d1e1oa2 232 YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPT 311 (342)
T ss_dssp CBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSE
T ss_pred CccccChhhccccccchhhhhhhcccCCEeecCCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCc
Confidence 9 99999999899999999999999998 123455566778899999999999999
Q ss_pred -cceecHHHHH-HHhCCCccceeeec
Q 048360 165 -YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 165 -G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
|||||+|||+ +++|.+||++|+|.
T Consensus 312 ~G~glG~dRlvm~l~g~~nIrdvi~F 337 (342)
T d1e1oa2 312 AGLGIGIDRMIMLFTNSHTIRDVILF 337 (342)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGTSSS
T ss_pred cchhHHHHHHHHHHhCCCcHHHhccC
Confidence 9999999965 99999999988775
No 2
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.2e-47 Score=335.76 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=139.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------HHHHH----HHHh----hHHHhc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------WMVME----LKGS----CKIRYH 61 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~l~~~----i~~~----~~~~~~ 61 (199)
++||+||||||||+|+++|++||||||||||||+++ .|||||||| +.+++ +... ....+.
T Consensus 91 ~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~~~~ 170 (353)
T d1eova2 91 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 170 (353)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccchhhh
Confidence 579999999999999999999999999999999986 589999999 12222 2111 100000
Q ss_pred ------CCCCCCCCccccCCCCceeeeHHHHHHhhc--CCCC------CHH---HHhccc-------chhhccc---CCC
Q 048360 62 ------SNGPENEPIEIDFMPPFRKLDMIAEMERPA--NICM------PKI---FLLMLL-------PKLSTDH---MSP 114 (199)
Q Consensus 62 ------~~~~~~~~~~~~~~~p~~rity~ea~~~~~--G~~~------~~~---~L~~li-------p~fv~dy---~~p 114 (199)
...............++.|+||.||++.+. +... ..+ .+.+++ ++||+|| ++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~i~~~P~~~~p 250 (353)
T d1eova2 171 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRP 250 (353)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSC
T ss_pred hhhhhhcccCccceeeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHHHHHHHHhhccCCcccccCCcHHHhh
Confidence 000000011122356899999999998542 2222 111 333333 5788899 799
Q ss_pred c-ccccCCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-
Q 048360 115 L-AKGHRSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS- 174 (199)
Q Consensus 115 l-ak~~~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~- 174 (199)
| ++++++++++++|||||++|.| .++.+.++..+.|+|||+|++|||||| |||||+|||+
T Consensus 251 ~~~~~~~~~~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~m 330 (353)
T d1eova2 251 FYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 330 (353)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHH
T ss_pred hhhCCChhhhhhhhceeeeeeceEEcceecccCCHHHHHHHHHHcCCChhhhHHHHHHHHhHcCCCCCceeeeHHHHHHH
Confidence 9 4678889999999999999999 234555555567899999999999999 9999999966
Q ss_pred HHhCCCcccee--eecCCCcc
Q 048360 175 FVTETKERHLV--YARAHRGY 193 (199)
Q Consensus 175 ~l~g~~~i~~v--~~~~~~~~ 193 (199)
+++|++||++| |||+++++
T Consensus 331 ~l~~~~~Irdvi~FPr~~~~~ 351 (353)
T d1eova2 331 FYLDLKNIRRASLFPRDPKRL 351 (353)
T ss_dssp HHTTCSSGGGGCSSCCBTTBC
T ss_pred HHhCCCcHHheeCCCCCCCCC
Confidence 88999999955 56676654
No 3
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=1.2e-44 Score=310.45 Aligned_cols=184 Identities=15% Similarity=0.006 Sum_probs=136.0
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCC---CCCCchHHHH-----------HHH---HHHHHhhHHHhcCCC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGM---DLTHLPELTM-----------WMV---MELKGSCKIRYHSNG 64 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~---~~rHl~EFtm-----------~l~---~~i~~~~~~~~~~~~ 64 (199)
++||+||||||||++|++|++||||||||||||++ ++|||||||| +++ ++++..+......
T Consensus 68 ~~yL~~SPel~lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~-- 145 (293)
T d1nnha_ 68 KMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEE-- 145 (293)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eeecccChhhhHHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHH--
Confidence 47999999999999999999999999999999975 4799999999 222 2222211100000
Q ss_pred CCCCCccccCCCCceeeeHHHHHHhhcCCCCCHHHHhccc-chhhcccCCCcccccCCCCceeEEEEEeecchh------
Q 048360 65 PENEPIEIDFMPPFRKLDMIAEMERPANICMPKIFLLMLL-PKLSTDHMSPLAKGHRSKPGLTLRLELFVNKRE------ 137 (199)
Q Consensus 65 ~~~~~~~~~~~~p~~rity~ea~~~~~G~~~~~~~L~~li-p~fv~dy~~plak~~~~~p~~~~rFel~i~G~E------ 137 (199)
....+++...||+++||.||++++ |.|... -.++- |+|++||.++|++...++...+.+|+++++|.|
T Consensus 146 --~~~~~~~~~~~~~~~~~~eal~~~-g~d~~~--~~~~~~p~~~~~~p~~f~~~~~~~~~~~~~~~l~~~g~Elang~~ 220 (293)
T d1nnha_ 146 --WTGREFPKTKRFEVFEYSEVLEEF-GSDEKA--SQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGE 220 (293)
T ss_dssp --HHSSCCCCCSSCEEEEHHHHHHHT-SSHHHH--HHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEE
T ss_pred --HhCcccccCCccccccHHhhhccc-Cccccc--ccccccceeccccchhhcccccccccccceeEecccCcccccccc
Confidence 001234556799999999999875 544221 11222 999999988887766667778999999999999
Q ss_pred -----------hhhcCCccccCCcHHHHHHHhcC-CCCC-cceecHHHHH-HHhCCCcccee--eecCCCcce
Q 048360 138 -----------DQQMGDSEAMVIDGSFCTAHAKK-QTIS-YFATLIDGVS-FVTETKERHLV--YARAHRGYA 194 (199)
Q Consensus 138 -----------~~~~g~~~~~~~d~~yl~a~~~G-~pPh-G~giGleRl~-~l~g~~~i~~v--~~~~~~~~~ 194 (199)
.++.|.++. . .+|||+|++|| |||| |||||+|||+ +++|.+||++| |||+++-.|
T Consensus 221 el~d~~~~~~r~~~~gl~~e-~-~~~yl~a~~~G~mPP~~G~glGiDRL~m~l~g~~~Irdv~~FPR~~g~~~ 291 (293)
T d1nnha_ 221 REWEYEKIVAKIRKAGLNED-S-FRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 291 (293)
T ss_dssp BCCCHHHHHHHHHHTTCCGG-G-GHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred cccCHHHHHHHHHHcCCCHH-H-HHHHHHHHHhCCCCCCCeEeehHHHHHHHHhCCCcHHheecCCCCCCCcC
Confidence 344555432 2 28999999999 9999 9999999965 99999999954 677776543
No 4
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=100.00 E-value=1.6e-44 Score=313.52 Aligned_cols=189 Identities=16% Similarity=0.089 Sum_probs=133.4
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH------------HH---HHHHHHhhHH---HhcC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM------------WM---VMELKGSCKI---RYHS 62 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm------------~l---~~~i~~~~~~---~~~~ 62 (199)
++||+||||+|||+++++|++||||||||||||+++ .||++|||| ++ ++.++..+.. ....
T Consensus 81 ~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~ 160 (335)
T d1b8aa2 81 DAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNA 160 (335)
T ss_dssp EEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc
Confidence 579999999999999999999999999999999986 689999999 11 2222111100 0000
Q ss_pred -CCCCCCCccccCCCCceeeeHHHHHHhh--cCCCCCH------H---HHhccc-------chhhccc---CCCccc-cc
Q 048360 63 -NGPENEPIEIDFMPPFRKLDMIAEMERP--ANICMPK------I---FLLMLL-------PKLSTDH---MSPLAK-GH 119 (199)
Q Consensus 63 -~~~~~~~~~~~~~~p~~rity~ea~~~~--~G~~~~~------~---~L~~li-------p~fv~dy---~~plak-~~ 119 (199)
+.............||+|+||.||++.+ .|.++.. . .+...+ |+||+|| ++||++ .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~P~~~~pl~~~~~ 240 (335)
T d1b8aa2 161 KELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKY 240 (335)
T ss_dssp HHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCEE
T ss_pred chhhhhccccccCCCCcccccHHHHHHHHHhhccccCcccccccccccceeeeeecccccccceeecChHHhhhcccccc
Confidence 0000000111345799999999999864 3544432 1 111111 6899999 899965 45
Q ss_pred CCCCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCC
Q 048360 120 RSKPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETK 180 (199)
Q Consensus 120 ~~~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~ 180 (199)
+++|++++|||||++|+| .++.+.++ ..++|||+|++|||||| |||||+|||+ +++|++
T Consensus 241 ~~~~~~a~rfel~~~G~El~nG~~e~~~~~~~~~r~~~~~~~~--e~~e~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~ 318 (335)
T d1b8aa2 241 DNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNP--ESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLP 318 (335)
T ss_dssp TTEEEEESEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCG--GGGHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCS
T ss_pred CCCcHHHHhhccccCceeeecccchhcCHHHHHHHHHHcCCCH--HHHHHHHHHhhcCCCCCceeeeHHHHHHHHHhCCC
Confidence 667899999999999999 12333322 12489999999999999 9999999965 999999
Q ss_pred ccceee--ecCCCc
Q 048360 181 ERHLVY--ARAHRG 192 (199)
Q Consensus 181 ~i~~v~--~~~~~~ 192 (199)
||++|+ ||..++
T Consensus 319 ~IrdVi~FPr~~~~ 332 (335)
T d1b8aa2 319 NIREVILFPRDRRR 332 (335)
T ss_dssp CGGGGSSSCCBTTB
T ss_pred cHHheEcCCCCCCC
Confidence 999665 444443
No 5
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=100.00 E-value=1.1e-43 Score=311.41 Aligned_cols=184 Identities=19% Similarity=0.220 Sum_probs=130.8
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HHHHHHHHhhHHHhcCCCCCCCCc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WMVMELKGSCKIRYHSNGPENEPI 70 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l~~~i~~~~~~~~~~~~~~~~~~ 70 (199)
++||+||||||||+++++|++||||||||||||+++++|+||||| +++..+.+.++..+... .
T Consensus 89 ~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~------~ 162 (356)
T d1l0wa3 89 FYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREA------L 162 (356)
T ss_dssp EEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH------T
T ss_pred ccCCCcChhHHHHHhhhcccCcEEEEeccccccccCCcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH------h
Confidence 479999999999999999999999999999999999999999999 33322222221111100 1
Q ss_pred cccCCCCceeeeHHHHHHhhcCCCCC--HH----------HH------hc---cc-chhhccc--CCCcccccCCCCcee
Q 048360 71 EIDFMPPFRKLDMIAEMERPANICMP--KI----------FL------LM---LL-PKLSTDH--MSPLAKGHRSKPGLT 126 (199)
Q Consensus 71 ~~~~~~p~~rity~ea~~~~~G~~~~--~~----------~L------~~---li-p~fv~dy--~~plak~~~~~p~~~ 126 (199)
......||+|++|.+|+.++...... .+ .+ .. .+ |+|+++| ..|+.+ +++++.++
T Consensus 163 ~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~-~~~~~~~a 241 (356)
T d1l0wa3 163 GVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLE-KDPGRVRA 241 (356)
T ss_dssp CCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHH-HCGGGCBB
T ss_pred CCCCCCCCCcchHHhhHHHHhcCcHhHHHHhhhhhhccccccccccchhcceeeeeCCcccCChhhhchhh-cCCCccee
Confidence 22446789999999999987432211 10 00 00 11 8899999 333322 23456789
Q ss_pred EEEEEeecchh-----------------hhhcCCcc--ccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCcccee
Q 048360 127 LRLELFVNKRE-----------------DQQMGDSE--AMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERHLV 185 (199)
Q Consensus 127 ~rFel~i~G~E-----------------~~~~g~~~--~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~~v 185 (199)
+|||||++|+| .+..+.++ ....++|||+|++|||||| |||||+|||+ +++|.+||++|
T Consensus 242 ~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdv 321 (356)
T d1l0wa3 242 LAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREV 321 (356)
T ss_dssp SEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred eeeecccCCEEeeccEEEeCcHHHHHHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHHHHHHcCCCcHHhe
Confidence 99999999999 12223222 2234689999999999999 9999999965 99999999955
Q ss_pred --eecCCCc
Q 048360 186 --YARAHRG 192 (199)
Q Consensus 186 --~~~~~~~ 192 (199)
|||++++
T Consensus 322 i~FPR~~~r 330 (356)
T d1l0wa3 322 IAFPKNKEG 330 (356)
T ss_dssp SSSCCCTTS
T ss_pred ecCCCCCCC
Confidence 6666654
No 6
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.4e-43 Score=309.80 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=129.8
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCCCCCchHHHH-----------HH---HHHHHHhhHHHhcCCCCCC
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMDLTHLPELTM-----------WM---VMELKGSCKIRYHSNGPEN 67 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~~rHl~EFtm-----------~l---~~~i~~~~~~~~~~~~~~~ 67 (199)
.+||+||||||||+++++|++||||||||||||+++++|+||||| ++ +++++..+.....
T Consensus 81 ~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~------ 154 (346)
T d1c0aa3 81 FYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVK------ 154 (346)
T ss_dssp EEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHH------
T ss_pred cccCCcCHHHHHHHHhhcCCCceEEEeeeccccccCchhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHh------
Confidence 468999999999999999999999999999999999999999999 22 2222222211121
Q ss_pred CCccccCCCCceeeeHHHHHHhhcCC--CCCHH------H-----Hh------ccc-chhhccc---CCCcccccCCCCc
Q 048360 68 EPIEIDFMPPFRKLDMIAEMERPANI--CMPKI------F-----LL------MLL-PKLSTDH---MSPLAKGHRSKPG 124 (199)
Q Consensus 68 ~~~~~~~~~p~~rity~ea~~~~~G~--~~~~~------~-----L~------~li-p~fv~dy---~~plak~~~~~p~ 124 (199)
.++ ..+|++++|.|++.++... ++..+ + +. .+. +++++++ .+|+++.+.+++.
T Consensus 155 ---~~~-~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 230 (346)
T d1c0aa3 155 ---GVD-LGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENA 230 (346)
T ss_dssp ---SCC-CCSCCEEEHHHHHHHHSCSSCCTTCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTC
T ss_pred ---CCc-CCccceeeHHHHHHHhcccccchhhHhhhhhhccccccccchhcccceeeeEeeccccchhhHHHhccCCccc
Confidence 122 2579999999999877322 11111 0 00 011 5566665 6777766777889
Q ss_pred eeEEEEEeecchh-----------------hhhcCCcccc--CCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCccc
Q 048360 125 LTLRLELFVNKRE-----------------DQQMGDSEAM--VIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKERH 183 (199)
Q Consensus 125 ~~~rFel~i~G~E-----------------~~~~g~~~~~--~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i~ 183 (199)
+++|||+|++|.| .++.+.++.. ..++|||+|++|||||| |||||+|||+ +++|++||+
T Consensus 231 ~a~~fdl~~~G~El~nG~~rl~d~~~~~~r~~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~~Ir 310 (346)
T d1c0aa3 231 VANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIR 310 (346)
T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGG
T ss_pred cccccccCcCCEEEechhhhhchHHHHHHHHHHhCccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCCcHH
Confidence 9999999999999 1233332211 12368999999999999 9999999965 999999999
Q ss_pred ee--eecCCC
Q 048360 184 LV--YARAHR 191 (199)
Q Consensus 184 ~v--~~~~~~ 191 (199)
+| |||+++
T Consensus 311 dvi~FPRt~~ 320 (346)
T d1c0aa3 311 DVIAFPKTTA 320 (346)
T ss_dssp GGSSSCCCTT
T ss_pred heecCCCCCC
Confidence 55 666665
No 7
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=100.00 E-value=3.9e-43 Score=301.21 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=112.5
Q ss_pred ceeeecCchHHHHHHHhcCCCceEEeccccccCCCC-CCCchHHHH-----------HHHHHHHHh--------hHHHhc
Q 048360 2 ELYMRVSPELNLKRSIAGGFRRLCEIGKCYRNEGMD-LTHLPELTM-----------WMVMELKGS--------CKIRYH 61 (199)
Q Consensus 2 ~~yL~~SPql~lk~ll~~g~~rVfeIg~~FRaE~~~-~rHl~EFtm-----------~l~~~i~~~--------~~~~~~ 61 (199)
++||+||||+| |+++++|++||||||||||||+++ .||+||||| +.++++.+. +.....
T Consensus 62 ~~~L~~Spel~-k~ll~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~ 140 (304)
T d1n9wa2 62 RAYLAQSPQLY-KQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAG 140 (304)
T ss_dssp -------CHHH-HHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred chhccccHHHH-HHHhhcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 68999999998 556888999999999999999875 799999999 222222211 100000
Q ss_pred CCCCCCCCccccCCCCceeeeHHHHHHhh---cCCCC----CHH---HHhccc-------chhhccc---CCCcccccCC
Q 048360 62 SNGPENEPIEIDFMPPFRKLDMIAEMERP---ANICM----PKI---FLLMLL-------PKLSTDH---MSPLAKGHRS 121 (199)
Q Consensus 62 ~~~~~~~~~~~~~~~p~~rity~ea~~~~---~G~~~----~~~---~L~~li-------p~fv~dy---~~plak~~~~ 121 (199)
...............+|+++++.||++.. .+.+. ..+ .|.+.+ |+||+|| ++||++.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fi~~~P~~~~p~~~~~-~ 219 (304)
T d1n9wa2 141 DEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYP-E 219 (304)
T ss_dssp HHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTSCCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCB-C
T ss_pred hhhhhhccceecccchhhhhhHHHHHHHHHHHhCCCcCCCccHHHHHHHHHHHHhhcCCceEEEeCChhhhCchhhcc-c
Confidence 00000001122345689999999998743 33332 222 232322 8999999 89998754 4
Q ss_pred CCceeEEEEEeecchh-----------------hhhcCCccccCCcHHHHHHHhcCCCCC-cceecHHHHH-HHhCCCcc
Q 048360 122 KPGLTLRLELFVNKRE-----------------DQQMGDSEAMVIDGSFCTAHAKKQTIS-YFATLIDGVS-FVTETKER 182 (199)
Q Consensus 122 ~p~~~~rFel~i~G~E-----------------~~~~g~~~~~~~d~~yl~a~~~G~pPh-G~giGleRl~-~l~g~~~i 182 (199)
++.+++|||||++|+| .++.+.++. .++|||+|++|||||| |||||+|||+ +++|.+||
T Consensus 220 ~~~~a~rfel~~~G~El~nG~~e~~d~~~l~~r~~~~~~~~e--~~~~yl~al~~G~PP~~G~glGiDRL~m~l~g~~~I 297 (304)
T d1n9wa2 220 EDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPE--AFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNV 297 (304)
T ss_dssp TTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGG--GGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSG
T ss_pred ccceeehhccccCcEEEeccccccCCHHHHHHHHHHcCCCHH--HHHHHHHHHhcCCCCCceeehHHHHHHHHHhCCCcH
Confidence 5579999999999999 233444322 2489999999999999 9999999965 89999999
Q ss_pred ceeeec
Q 048360 183 HLVYAR 188 (199)
Q Consensus 183 ~~v~~~ 188 (199)
++|+|+
T Consensus 298 rdv~~F 303 (304)
T d1n9wa2 298 RYARAF 303 (304)
T ss_dssp GGGCSC
T ss_pred HheecC
Confidence 999875
No 8
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=92.32 E-value=0.018 Score=46.51 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.2
Q ss_pred HhcCC--CceEEeccccccCCCCCCCchHHHH
Q 048360 17 IAGGF--RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 17 l~~g~--~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
+..+. -|++.+|+|||+|..+++|.|+|.+
T Consensus 103 ~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ 134 (266)
T d1jjca_ 103 MVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQ 134 (266)
T ss_dssp HHHSCSSEEEEEEEEEECCSCCCSSCCSEEEE
T ss_pred HhccCCCceEEecccceecCCCCCccccccee
Confidence 34444 3899999999999999999999975
No 9
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=91.52 E-value=0.021 Score=46.01 Aligned_cols=32 Identities=3% Similarity=0.008 Sum_probs=25.0
Q ss_pred HhcCCCC----C---cceecHHHHH-HHhCCCccceeeec
Q 048360 157 HAKKQTI----S---YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 157 ~~~G~pP----h---G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
-+.|++| + -||||+|||+ ++.|.++||+.+-.
T Consensus 215 ~~~g~~~~~~~~~g~AfGlGlERlAMl~~gI~DIR~f~~~ 254 (266)
T d1jjca_ 215 ERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGG 254 (266)
T ss_dssp HTTTCCCCCTTCEEEEEEEEHHHHHHHHHTCSCGGGTTTC
T ss_pred hhccCCccccCCeEEEEeecHHHHHHHHcCCChHHHHhcC
Confidence 3568877 3 6799999986 78899999986544
No 10
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]}
Probab=80.21 E-value=0.88 Score=36.90 Aligned_cols=63 Identities=13% Similarity=-0.013 Sum_probs=41.6
Q ss_pred ceeEEEEEeecchh---------hhhcCCccccCCcHHHHHHHhcC-CCCC-cceecHHHHH-HHhCCCccceeeec
Q 048360 124 GLTLRLELFVNKRE---------DQQMGDSEAMVIDGSFCTAHAKK-QTIS-YFATLIDGVS-FVTETKERHLVYAR 188 (199)
Q Consensus 124 ~~~~rFel~i~G~E---------~~~~g~~~~~~~d~~yl~a~~~G-~pPh-G~giGleRl~-~l~g~~~i~~v~~~ 188 (199)
-+-.+|||=--|+- ++..+.+....+ .|-.++-.| +|-. |.|||=.||+ .++....|-+|-+-
T Consensus 239 vl~~a~ElSSMGIRVd~~~L~~QL~~~~~~~r~~l--~~Hk~ll~~~LP~TIGGGIGQSRlcM~lL~KaHIGEVQaS 313 (327)
T d12asa_ 239 VLEDAFELSSMGIRVDADTLKHQLALTGDEDRLEL--EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQAG 313 (327)
T ss_dssp TTTEEEEEEEEEEBCCHHHHHHHHHHHTCTTGGGS--HHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSCC
T ss_pred hcCceeeeecceeEECHHHHHHHHHHcCChhhhcC--HHHHHHHcCCCCccccccccHHHHHHHHHccCcccceeee
Confidence 33445555555543 334455444444 577888777 8888 9999999987 66777788877543
No 11
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=75.12 E-value=0.33 Score=38.65 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=17.3
Q ss_pred CCceEEeccccccCCCCCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
..|+|.+|+|||++.....+..||++
T Consensus 96 ~~r~~Y~g~vfR~~~~~~~r~rE~~Q 121 (318)
T d1z7ma1 96 SARYSYFGKIFRKEKRHKGRSTENYQ 121 (318)
T ss_dssp CEEEEEEEECCCCCC-------CCEE
T ss_pred CcccccccceeEEccccccccchhhh
Confidence 46999999999999876666779988
No 12
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=74.31 E-value=0.28 Score=39.34 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=28.3
Q ss_pred eeeecCchHHHHHHHhcCC-------CceEEeccccccCCCC----CCCchHHHH
Q 048360 3 LYMRVSPELNLKRSIAGGF-------RRLCEIGKCYRNEGMD----LTHLPELTM 46 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~-------~rVfeIg~~FRaE~~~----~rHl~EFtm 46 (199)
.+|+-..|-.+=.+...-. =|+||+++|||+|.++ -...-||+|
T Consensus 86 ~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~ 140 (291)
T d1qf6a4 86 YCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQ 140 (291)
T ss_dssp EEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEE
T ss_pred hcccccCcHHHHHHHHccccchhhcCeeEeecceeeeccccccccccccccccee
Confidence 3555555544333332211 4899999999999643 346789999
No 13
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=73.71 E-value=0.68 Score=36.27 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred eeeecCchHHHHHHHhcCC-------CceEEeccccccCCCCCC---CchHHH
Q 048360 3 LYMRVSPELNLKRSIAGGF-------RRLCEIGKCYRNEGMDLT---HLPELT 45 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~-------~rVfeIg~~FRaE~~~~r---Hl~EFt 45 (199)
.+|+-..+-..=.+..... =|+||+|+|||+|.+... ..-||+
T Consensus 97 ~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~ 149 (268)
T d1nj8a3 97 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIM 149 (268)
T ss_dssp EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCS
T ss_pred hhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccccccceeEEEEe
Confidence 4566555544434333221 489999999999954332 345775
No 14
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=70.72 E-value=0.74 Score=35.73 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.3
Q ss_pred CceEEeccccccCCCCC---CCchHHH
Q 048360 22 RRLCEIGKCYRNEGMDL---THLPELT 45 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~---rHl~EFt 45 (199)
=|+||+|+|||+|.+.. ...-|||
T Consensus 120 lr~~q~~~~fR~E~~~~~Gl~R~reF~ 146 (265)
T d1nj1a3 120 MRFYQVVNTFRYETKHTRPLIRVREIT 146 (265)
T ss_dssp EEEEEEEEEECCCCSCCBTTTBCSEEE
T ss_pred eEEEeeccceeeecccCcCCEEEEEEE
Confidence 47999999999995432 2445775
No 15
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=70.42 E-value=0.79 Score=36.54 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=30.5
Q ss_pred eeeecCchHHHHHHHhcC------C-CceEEeccccccCCCCC----CCchHHHH
Q 048360 3 LYMRVSPELNLKRSIAGG------F-RRLCEIGKCYRNEGMDL----THLPELTM 46 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g------~-~rVfeIg~~FRaE~~~~----rHl~EFtm 46 (199)
.+|+-..|-.+-.+.... + =|+||+++|||+|.++. ...-||+|
T Consensus 88 ~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~ 142 (291)
T d1nyra4 88 MVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTL 142 (291)
T ss_dssp EEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEE
T ss_pred ccccccchhHHHHhhhcEeccccccceEEeeccceeecCCCcccccccceeeeee
Confidence 567777777655443322 1 39999999999998653 34568888
No 16
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=66.76 E-value=0.71 Score=36.79 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.8
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||++.....+.-||++
T Consensus 98 ~k~~y~g~VfR~~~~~~g~~re~~Q 122 (327)
T d1wu7a2 98 LRWYSFPKVWRYEEPQAGRYREHYQ 122 (327)
T ss_dssp EEEEECCEEECCCCSCSSCCSEEEE
T ss_pred ceeeccCcceeccccccCCcchhhh
Confidence 3999999999999887666778988
No 17
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=66.15 E-value=1.1 Score=36.17 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=19.7
Q ss_pred CceEEeccccccCCCCCCC---chHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTH---LPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rH---l~EFtm 46 (199)
=|++|||.+||||-+.... .=||||
T Consensus 147 ~~~aqig~~fR~E~s~~~gl~RvReFtq 174 (331)
T d1b76a2 147 FGIAQIGKAFRNEITPRNFIFRVREFEQ 174 (331)
T ss_dssp EEEEEEEEEECCCSSCCTTTTSCSEEEE
T ss_pred hhhhhccceecccccccccccccchhhh
Confidence 4899999999999874433 348999
No 18
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=63.40 E-value=0.71 Score=36.61 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.7
Q ss_pred CceEEeccccccCCCCCCCchHHHH
Q 048360 22 RRLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
-|.|.+|+|||.+....-+.-||++
T Consensus 100 ~r~~y~g~v~r~~~~~~gr~re~~Q 124 (322)
T d1kmma2 100 QRLWYIGPMFRHERPQKGRYRQFHQ 124 (322)
T ss_dssp EEEEEEEEEECCCCCBTTBCSEEEE
T ss_pred hhHhhcccccccCCCCCCccchhhh
Confidence 4889999999999877656677877
No 19
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=63.20 E-value=1.2 Score=35.24 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=15.7
Q ss_pred ceEEeccccccCCCCCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
|+|.+|+|||.+.....+.-|||+
T Consensus 103 R~~Y~g~VfR~~~~~~~~~rE~~Q 126 (325)
T d1qe0a2 103 KLYYNGPMFRYERKQKGRYRQFNQ 126 (325)
T ss_dssp EEEEEEEEECC-------CCEEEE
T ss_pred hhheecceeeeccccCCccceeee
Confidence 899999999999876555569988
No 20
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=62.80 E-value=1.3 Score=36.95 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.3
Q ss_pred eEEeccccccCCCCC---CCchHHHH
Q 048360 24 LCEIGKCYRNEGMDL---THLPELTM 46 (199)
Q Consensus 24 VfeIg~~FRaE~~~~---rHl~EFtm 46 (199)
|.|||++||||-+-+ -..-||||
T Consensus 212 iAQIGk~FRNEIsPr~~l~R~REF~q 237 (394)
T d1atia2 212 IAQIGKAFRNEITPRNFIFRVREFEQ 237 (394)
T ss_dssp EEEEEEEEBCCSSCCTGGGSCSEEEE
T ss_pred eeeeccccccccCcccCCccccccee
Confidence 789999999995432 24568888
No 21
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}
Probab=61.68 E-value=1.3 Score=33.83 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=22.1
Q ss_pred eeeecCchHHHHHHHhcCC-------CceEEeccccccCCCC
Q 048360 3 LYMRVSPELNLKRSIAGGF-------RRLCEIGKCYRNEGMD 37 (199)
Q Consensus 3 ~yL~~SPql~lk~ll~~g~-------~rVfeIg~~FRaE~~~ 37 (199)
.+|+-+.|-.+=.+..... -|+||+++|||+|.++
T Consensus 102 ~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~ 143 (272)
T d1hc7a2 102 LAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT 143 (272)
T ss_dssp EEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC
T ss_pred hhcccccccceeehhhceeccccccceeeeeccccccccccc
Confidence 4666666643322222111 3899999999999864
No 22
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=60.77 E-value=0.82 Score=36.27 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHhCCCccc
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVTETKERH 183 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~g~~~i~ 183 (199)
+.+..+.---.|+ |||+|+|||+.++..+++.
T Consensus 291 ~L~~~f~~~~~pAvGfsi~ld~L~~~l~~~~~~ 323 (325)
T d1qe0a2 291 GLLELLDGPSETGIGFALSIERLLLALEEEGIE 323 (325)
T ss_dssp SHHHHTTCCCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCCCCeEEEEeeHHHHHHHHHHcCCC
Confidence 4566653112478 9999999998666555543
No 23
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=58.08 E-value=1.3 Score=35.15 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=18.3
Q ss_pred ceEEeccccccCCCCCCCchHHHH
Q 048360 23 RLCEIGKCYRNEGMDLTHLPELTM 46 (199)
Q Consensus 23 rVfeIg~~FRaE~~~~rHl~EFtm 46 (199)
|.|.+|+|||++.......-||++
T Consensus 102 r~~Y~g~VfR~~~~~~gr~re~~Q 125 (324)
T d1h4vb2 102 RLWMAGPMFRAERPQKGRYRQFHQ 125 (324)
T ss_dssp EEEEEEEEECCCCC----CCEEEE
T ss_pred hheeeCcccccCcccCCCcceecc
Confidence 999999999999887666778888
No 24
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=57.49 E-value=1.8 Score=33.71 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCceEEeccccccC-------CC--CCCCchHHHH
Q 048360 21 FRRLCEIGKCYRNE-------GM--DLTHLPELTM 46 (199)
Q Consensus 21 ~~rVfeIg~~FRaE-------~~--~~rHl~EFtm 46 (199)
..|+-..-+|.|.. +. +.||++=|.|
T Consensus 58 ~~r~~~~QkCiR~~gk~nDld~VG~t~rH~TfFEM 92 (236)
T d1riqa2 58 YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEM 92 (236)
T ss_dssp CSEEEEEEEEECEETTEECTTTTTTSSSCCSEEEE
T ss_pred CCccccccccccccCccchhhhcCCcccchhhhhh
Confidence 47899999999972 22 4799999999
No 25
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=50.48 E-value=1.9 Score=33.89 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=17.3
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHh
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVT 177 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~ 177 (199)
..++.+. +-.|+ |||+|+|||+.++
T Consensus 288 ~L~~~~g-~~~~avGfsi~ld~i~~~l 313 (318)
T d1z7ma1 288 QLLSNFQ-EEAFAIGFCCHMDTILKAL 313 (318)
T ss_dssp HHHHTSS-SCCCCEEEEEEHHHHHHHH
T ss_pred HHHHhcC-CCCCEEEEEeeHHHHHHHH
Confidence 4555553 34578 9999999987443
No 26
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=41.78 E-value=3.2 Score=32.64 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHhCCCccc
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVTETKERH 183 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~g~~~i~ 183 (199)
..++.+.----|+ |||+|+|||..++..++++
T Consensus 293 ~L~~~f~g~~~pAvGfsl~~~~l~~~l~~~~~~ 325 (327)
T d1wu7a2 293 NLASLMSGESVPAVGFGMGDAVISLLLKRENVQ 325 (327)
T ss_dssp THHHHHHSCCCCEEEEEEEHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCCCCeEEEEeeHHHHHHHHHhcCCC
Confidence 4666664113368 9999999998666666553
No 27
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.61 E-value=3.3 Score=32.71 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=15.5
Q ss_pred CceEEeccccccCCCC--CCC----chHHHH
Q 048360 22 RRLCEIGKCYRNEGMD--LTH----LPELTM 46 (199)
Q Consensus 22 ~rVfeIg~~FRaE~~~--~rH----l~EFtm 46 (199)
=++-|||+|||+|.++ +++ .=|||+
T Consensus 140 f~iaq~g~~fR~E~~~~~~~~gl~RvReF~q 170 (290)
T d1g5ha2 140 FGLAQIGVCFHPVSNSNQTPSSVTRVGEKTE 170 (290)
T ss_dssp EEEEEEEEEEEEEC---------CEEEEEEE
T ss_pred cEEEEeccccccccccCCcccccceeeEeEe
Confidence 3789999999977542 332 347776
No 28
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=31.65 E-value=5.7 Score=30.92 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=18.2
Q ss_pred HHHHHHhcCC-CCC-cceecHHHHHHHhCC
Q 048360 152 SFCTAHAKKQ-TIS-YFATLIDGVSFVTET 179 (199)
Q Consensus 152 ~yl~a~~~G~-pPh-G~giGleRl~~l~g~ 179 (199)
..+..+. |- -|+ ||++|+|||+.++..
T Consensus 287 ~L~~~f~-g~~~pAvGfsi~ld~l~~~l~~ 315 (322)
T d1kmma2 287 GLVEQLG-GRATPAVGFAMGLERLVLLVQA 315 (322)
T ss_dssp THHHHTT-SCCCCEEEEEEEHHHHHHHHHH
T ss_pred HHHHhcC-CCCCCeEEEEecHHHHHHHHHh
Confidence 3555552 32 378 999999998866543
No 29
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=29.66 E-value=6 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCC-cceecHHHHHHHhCCCc
Q 048360 152 SFCTAHAKKQTIS-YFATLIDGVSFVTETKE 181 (199)
Q Consensus 152 ~yl~a~~~G~pPh-G~giGleRl~~l~g~~~ 181 (199)
.++..+.-.--|. ||++|+|||+.++...+
T Consensus 289 ~L~~~f~~~~~pAvGfsi~ld~l~~~l~~~g 319 (324)
T d1h4vb2 289 GLSELLGGPRVPGVGFAFGVERVALALEAEG 319 (324)
T ss_dssp THHHHTTCCCCCEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCCeEEEEeeHHHHHHHHHhcC
Confidence 3455553212378 99999999986555443
No 30
>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX {Campylobacter jejuni [TaxId: 197]}
Probab=25.46 E-value=9.7 Score=24.48 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=8.3
Q ss_pred cceecHHHHH
Q 048360 165 YFATLIDGVS 174 (199)
Q Consensus 165 G~giGleRl~ 174 (199)
--|||+||.+
T Consensus 68 Y~GLGVDR~a 77 (82)
T d2nrha1 68 YQGLGIDRIA 77 (82)
T ss_dssp CBTCCHHHHH
T ss_pred eeccCccHHH
Confidence 5799999965
No 31
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.83 E-value=14 Score=29.15 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.2
Q ss_pred ceEEeccccccCCCC
Q 048360 23 RLCEIGKCYRNEGMD 37 (199)
Q Consensus 23 rVfeIg~~FRaE~~~ 37 (199)
|++++++|||+|..+
T Consensus 137 r~~~~s~cfR~Eag~ 151 (311)
T d1seta2 137 RYAGYAPAFRSEAGS 151 (311)
T ss_dssp EEEEEEEEECCCCSC
T ss_pred eEEeecccchhhhcc
Confidence 799999999999754
No 32
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}
Probab=22.62 E-value=11 Score=27.59 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.9
Q ss_pred ceEEeccccccCC
Q 048360 23 RLCEIGKCYRNEG 35 (199)
Q Consensus 23 rVfeIg~~FRaE~ 35 (199)
|+||||+||+..+
T Consensus 95 ~lFEiG~vf~~~~ 107 (207)
T d1jjcb5 95 LLFEVGRVFRERE 107 (207)
T ss_dssp EEEEEEEEESSSE
T ss_pred eeEeeeeeeeccc
Confidence 6899999997654
No 33
>d1wj9a2 d.58.53.1 (A:88-211) Hypothetical protein TTHB192 {Thermus thermophilus [TaxId: 274]}
Probab=21.39 E-value=16 Score=24.88 Aligned_cols=20 Identities=0% Similarity=-0.195 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCCC-cceecH
Q 048360 151 GSFCTAHAKKQTIS-YFATLI 170 (199)
Q Consensus 151 ~~yl~a~~~G~pPh-G~giGl 170 (199)
+-|.+++..|+=++ +||+|+
T Consensus 99 ~~f~~aL~~GIGraKAyGcGL 119 (124)
T d1wj9a2 99 ERALATLRRGVGPGKALGLGL 119 (124)
T ss_dssp HHHHHHHHHCSSSCTTTTCCC
T ss_pred HHHHHHHHhCCCcccccCcce
Confidence 67999999999999 888885
Done!